From 044a8710c506e768b1734d1a77ecedba26a90e62 Mon Sep 17 00:00:00 2001 From: Goksel Misirli Date: Fri, 28 Oct 2016 15:14:31 +0100 Subject: [PATCH] rdf version is serialized in the turtle format --- .../src/sybiont_generator/core_rdfversion.clj | 2 +- .../src/sybiont_generator/rdf.clj | 9 +- .../sybiontkb_rdfversion_desc.rdf | 578302 --------------- ....rdf => sybiontkb_rdfversion_inferred.ttl} | 28624 +- 4 files changed, 14321 insertions(+), 592616 deletions(-) delete mode 100644 sybiont_generator/sybiontkb_rdfversion_desc.rdf rename sybiont_generator/{sybiontkb_rdfversion_inferred.rdf => sybiontkb_rdfversion_inferred.ttl} (99%) diff --git a/sybiont_generator/src/sybiont_generator/core_rdfversion.clj b/sybiont_generator/src/sybiont_generator/core_rdfversion.clj index e2be651..87f22af 100644 --- a/sybiont_generator/src/sybiont_generator/core_rdfversion.clj +++ b/sybiont_generator/src/sybiont_generator/core_rdfversion.clj @@ -611,7 +611,7 @@ (addSPARQLConstructQueryResult rdfModel rdfModel "rdfinference/ActivatorEncodingCDS.sparql") (addSPARQLConstructQueryResult rdfModel rdfModel "rdfinference/KinaseEncodingCDS.sparql") (addSPARQLConstructQueryResult rdfModel rdfModel "rdfinference/ResponseRegulatorEncodingCDS.sparql") - (save rdfModel "sybiontkb_rdfversion_inferred.rdf") + (save rdfModel "sybiontkb_rdfversion_inferred.ttl") ) diff --git a/sybiont_generator/src/sybiont_generator/rdf.clj b/sybiont_generator/src/sybiont_generator/rdf.clj index 663df5c..afb0dac 100644 --- a/sybiont_generator/src/sybiont_generator/rdf.clj +++ b/sybiont_generator/src/sybiont_generator/rdf.clj @@ -23,6 +23,13 @@ (println "Wrote the model") ) +(defn saveRdfXml[model filePath] + ;(.write model (new FileOutputStream (new File filePath)) "RDF/XML-ABBREV") + (.write model (new FileOutputStream (new File filePath)) "RDF/XML") + ;(.write model (new FileOutputStream (new File filePath)) "Turtle") + (println "Wrote the model") + ) + (defn addSPARQLConstructQueryResult[modelToAdd modelToQuery sparqlFilePath] ( @@ -30,7 +37,7 @@ (if (.isEmpty resultModel) (println (concat sparqlFilePath " did not return any results!")) (do - (println "Adding query results") + (println (str "Adding query results for " sparqlFilePath)) (.add modelToAdd resultModel) ) ) diff --git a/sybiont_generator/sybiontkb_rdfversion_desc.rdf b/sybiont_generator/sybiontkb_rdfversion_desc.rdf deleted file mode 100644 index d2f52fc..0000000 --- a/sybiont_generator/sybiontkb_rdfversion_desc.rdf +++ /dev/null @@ -1,578302 +0,0 @@ - - - - - 1.0 - An ontology for Bacillus subtilis parts - bacillondex - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.5.1.30 - - - - - - GO:0000010 - - - - - - TRANS-HEXAPRENYLTRANSTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: all-trans-hexaprenyl diphosphate + isopentenyl diphosphate = diphosphate + all-trans-heptaprenyl diphosphate.; - GO:0000010 - all-trans-heptaprenyl-diphosphate synthase - all-trans-hexaprenyl-diphosphate:isopentenyl-diphosphate hexaprenyltranstransferase - heptaprenyl diphosphate synthase - heptaprenyl pyrophosphate synthase - heptaprenyl pyrophosphate synthetase - trans-hexaprenyltranstransferase - - - - - - - - - - - - - GO:0000015 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A multimeric enzyme complex, usually a dimer or an octamer, that catalyzes the conversion of 2-phospho-D-glycerate to phosphoenolpyruvate and water. - GO:0000015 - enolase complex - phosphopyruvate hydratase complex - - - - - - - - - - - - GO:0000027 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. - GO:0000027 - ribosomal large subunit assembly - - - - - - - - - - - - - 2.4.1.- - - - - - - 7672 "mannosyltransferase activity" - - - - - - GO:0000030 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a mannosyl group to an acceptor molecule, typically another carbohydrate or a lipid. - GO:0000030 - mannosyltransferase - - - - - - - - - - - - 3.5.4.2 - - - - - - ADENINE-DEAMINASE-RXN - - - - - - GO:0000034 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: adenine + H2O = hypoxanthine + NH3. - ADase - GO:0000034 - adenase - adenine aminase - adenine aminohydrolase - adenine deaminase - - - - - - - - - - - - GO:0000036 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of acyl groups into, out of, within or between cells. - GO:0000036 - acyl carrier - - - - - - - - - - - - - GO:0000049 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with transfer RNA. - GO:0000049 - tRNA binding - - - - - - - - - - - - GO:0000103 - - - - - - GO:0019378 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. - GO:0000103 - sulfate assimilation - sulfate assimilation phosphoadenylyl sulfate reduction by an oxidoreductase acting on sulfur group of donors NAD or NADP as acceptor - sulphate assimilation - sulphate assimilation phosphoadenylyl sulphate reduction by an oxidoreductase acting on sulphur group of donors NAD or NADP as acceptor - - - - - - - - - - - - - 1.3.99.1 - - - - - - 21566 "succinate dehydrogenase activity" - - - - - - GO:0000104 - - - - - - GO:0019739 - - - - - - SUCC-FUM-OXRED-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. - GO:0000104 - fumarate dehydrogenase - fumarate reductase - fumaric hydrogenase - oxidoreductase - succinate dehydrogenase - succinate oxidoreductase - succinate:acceptor oxidoreductase - succinic acid dehydrogenase - succinic dehydrogenase - succinodehydrogenase - succinyl dehydrogenase - - - - - - - - - - - - - GO:0000105 - - - - - - HISTSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. - GO:0000105 - histidine anabolism - histidine biosynthesis - histidine biosynthetic process - histidine formation - histidine synthesis - - - - - - - - - - - - - 2.4.2.- - - - - - - GLUTAMIDOTRANS-RXN - - - - - - GO:0000107 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + AICAR + L-glutamate. - GO:0000107 - glutamine amidotransferase:cyclase - imidazole glycerol phosphate synthase - imidazole-glycerol-phosphate synthase - imidazoleglycerol phosphate synthase - imidazoleglycerol-phosphate synthase - - - - - - - - - - - - - GO:0000150 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA. - GO:0000150 - recombinase - strand transferase - - - - - - - - - - - - - - GO:0000154 - - - - - - GO:0016548 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. - GO:0000154 - rRNA editing - rRNA modification - - - - - - - - - - - - - - 2.7.3.- - - - - - - GO:0000155 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the phosphorylation of a specific transcription regulator in response to the presence of a particular signal substance outside the cell. - GO:0000155 - two-component sensor - two-component sensor molecule - two-component system sensor - - - - - - - - - - - - - - GO:0000156 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Alters the level of transcription of target genes, usually by binding to a transcription factor, when phosphorylated by a sensor that detects the presence of a particular signal substance outside the cell. - GO:0000156 - two-component response regulator - - - - - - - - - - - - - GO:0000160 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. - GO:0000160 - histidyl-aspartyl phosphorelay - two-component signal transduction system (phosphorelay) - - - - - - - - - - - - - - GO:0000162 - - - - - - GO:0009096 - - - - - - TRPSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. - GO:0000162 - aromatic amino acid family biosynthetic process anthranilate pathway - tryptophan anabolism - tryptophan biosynthesis - tryptophan biosynthetic process - tryptophan formation - tryptophan synthesis - - - - - - - - - - - - - GO:0000166 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety.; - GO:0000166 - nucleotide binding - - - - - - - - - - - - - 3.1.13.- - - - - - - GO:0000175 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.; - 3'-5' exoribonuclease - 3'-5'-exoribonuclease - GO:0000175 - - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0000179 - - - - - - GO:0043790 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor. - 18S rRNA dimethylase - GO:0000179 - S-adenosylmethionine-6-N' dimethyltransferase - dimethyladenosine transferase - rRNA (adenine-N6,N6-)-dimethyltransferase - - - - - - - - - - - - GO:0000256 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. - GO:0000256 - allantoin breakdown - allantoin catabolic process - allantoin catabolism - allantoin degradation - - - - - - - - - - - - - - GO:0000271 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages. - GO:0000271 - glycan biosynthesis - glycan biosynthetic process - polysaccharide anabolism - polysaccharide biosynthesis - polysaccharide biosynthetic process - polysaccharide formation - polysaccharide synthesis - - - - - - - - - - - - - GO:0000272 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages. - GO:0000272 - polysaccharide breakdown - polysaccharide catabolic process - polysaccharide catabolism - polysaccharide degradation - - - - - - - - - - - - 1.4.1.1 - - - - - - ALANINE-DEHYDROGENASE-RXN - - - - - - GO:0000286 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-alanine + H2O + NAD+ = pyruvate + NH3 + NADH + H+. - AlaDH - GO:0000286 - L-alanine dehydrogenase - L-alanine:NAD+ oxidoreductase - NAD-dependent alanine dehydrogenase - NAD-linked alanine dehydrogenase - NADH-dependent alanine dehydrogenase - alanine dehydrogenase - alanine oxidoreductase - alpha-alanine dehydrogenase - - - - - - - - - - - - - GO:0000287 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with magnesium (Mg) ions. - GO:0000287 - magnesium binding - magnesium ion binding - - - - - - - - - - - - - 2.4.2.22 - - - - - - GO:0000310 - - - - - - GO:0009043 - - - - - - XANPRIBOSYLTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + xanthine = (9-D-ribosylxanthine)-5'-phosphate + diphosphate; substrate specificity for xanthine. - 5-phospho-alpha-D-ribose-1-diphosphate:xanthine phospho-D-ribosyltransferase - GO:0000310 - XMP pyrophosphorylase - XMP:diphosphate 5-phospho-alpha-D-ribosyltransferase - Xan phosphoribosyltransferase - xanthine phosphoribosyltransferase - xanthine-guanine phosphoribosyltransferase - xanthosine 5'-phosphate pyrophosphorylase - xanthylate pyrophosphorylase - xanthylic pyrophosphorylase - - - - - - - - - - - - - 1.1.1.4 - - - - - - GO:0000721 - - - - - - RR-BUTANEDIOL-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reversible reaction: (R,R)-butane-2,3-diol + NAD+ = (R)-acetoin + NADH + H+. - (R,R)-butanediol dehydrogenase - 1-amino-2-propanol dehydrogenase - 1-amino-2-propanol oxidoreductase - 2 3-butanediol dehydrogenase - 3-butanediol dehydrogenase - D-1-amino-2-propanol dehydrogenase - D-aminopropanol dehydrogenase - D-butanediol dehydrogenase - GO:0000721 - aminopropanol oxidoreductase - butylene glycol dehydrogenase - butyleneglycol dehydrogenase - dehydrogenase - diacetyl reductase - oxidoreductase - reductase - - - - - - - - - - - - - 448607 "Homologous Recombination Repair" - - - - - - 469736 "Homologous Recombination Repair" - - - - - - 487646 "Homologous Recombination Repair" - - - - - - 507622 "Homologous Recombination Repair" - - - - - - 517588 "Homologous Recombination Repair" - - - - - - 526450 "Homologous Recombination Repair" - - - - - - 531256 "Homologous Recombination Repair" - - - - - - 536631 "Homologous Recombination Repair" - - - - - - 542358 "Homologous Recombination Repair" - - - - - - 547703 "Homologous Recombination Repair" - - - - - - 552288 "Homologous Recombination Repair" - - - - - - 557904 "Homologous Recombination Repair" - - - - - - 568505 "Homologous Recombination Repair" - - - - - - 581716 "Homologous Recombination Repair" - - - - - - 585850 "Homologous Recombination Repair" - - - - - - 592630 "Homologous Recombination Repair" - - - - - - 595425 "Homologous Recombination Repair" - - - - - - 597360 "Homologous Recombination Repair" - - - - - - 598158 "Homologous Recombination Repair" - - - - - - 600681 "Homologous Recombination Repair" - - - - - - 602587 "Homologous Recombination Repair" - - - - - - 73888 "Homologous Recombination Repair" - - - - - - GO:0000724 - - - - - - GO:0016924 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. - GO:0000724 - HDR - HRR - Rad51-dependent recombinational repair - Rhp51-dependent recombinational repair - double-strand break repair via homologous recombination - homologous recombinational repair - homology-directed repair - - - - - - - - - - - - Conjugation - - - - - - GO:0000746 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. - GO:0000746 - conjugation - - - - - - - - - - - - GO:0000774 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. - GO:0000774 - adenyl-nucleotide exchange factor - - - - - - - - - - - - GO:0000902 - - - - - - GO:0007148 - - - - - - GO:0045790 - - - - - - GO:0045791 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form. - GO:0000902 - cell morphogenesis - cellular morphogenesis - - - - - - - - - - - - GO:0000917 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a barrier septum are not able to exchange intracellular material. - GO:0000917 - barrier septum assembly - barrier septum formation - formation of barrier septum - septation - septin assembly and septum biosynthesis - septin assembly and septum formation - - - - - - - - - - - - GO:0000918 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of marking the site where a barrier septum will form. - GO:0000918 - selection of site for barrier cell septum biosynthesis - selection of site for barrier cell septum formation - selection of site for barrier septum formation - septin assembly and septum biosynthesis - septin assembly and septum formation - septum positioning - - - - - - - - - - - - GO:0000921 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The aggregation, arrangement and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex. - GO:0000921 - septin assembly and septum biosynthesis - septin assembly and septum formation - septin ring assembly - - - - - - - - - - - - - GO:0001522 - - - - - - Pseudouridine - - - - - - Pseudouridylation - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. - GO:0001522 - pseudouridine synthesis - pseudouridylation - - - - - - - - - - - - GO:0001539 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Cell motility due to movement of cilia or flagella. - GO:0001539 - ciliary flagellar motility - ciliary or flagellar motility - - - - - - - - - - - - GO:0001680 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Post-transcriptional addition of the terminal 3' CCA sequence to a tRNA which does not encode this sequence within the primary transcript. - GO:0001680 - tRNA 3'-terminal CCA addition - - - - - - - - - - - - - GO:0001682 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P. - GO:0001682 - tRNA 5' leader removal - tRNA 5'-leader removal - - - - - - - - - - - - 1.4.3.2 - - - - - - GO:0001716 - - - - - - L-AMINO-ACID-OXIDASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a L-amino acid + H2O + O2 = a 2-oxo acid + NH3 + H2O2. - GO:0001716 - L-amino-acid oxidase - L-amino-acid:oxygen oxidoreductase - ophio-amino-acid oxidase - - - - - - - - - - - - - GO:0001882 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose. - GO:0001882 - nucleoside binding - - - - - - - - - - - - GO:0002098 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.; - GO:0002098 - tRNA wobble uridine modification - - - - - - - - - - - - GO:0003674 - - - - - - GO:0005554 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions. - GO:0003674 - molecular function - molecular function unknown - molecular_function - - - - - - - - - - - - - GO:0003676 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any nucleic acid. - GO:0003676 - nucleic acid binding - - - - - - - - - - - - - GO:0003677 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid). - DNA binding - GO:0003677 - microtubule chromatin interaction - plasmid binding - - - - - - - - - - - - - GO:0003678 - - - - - - GO:0003679 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix.; - DNA helicase - GO:0003678 - - - - - - - - - - - - - 7372 "damaged DNA binding" - - - - - - GO:0003684 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with damaged DNA. - DNA repair enzyme - DNA repair protein - GO:0003684 - damaged DNA binding - - - - - - - - - - - - - GO:0003688 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally. - ARS binding - DNA replication origin binding - GO:0003688 - - - - - - - - - - - - GO:0003690 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with double-stranded DNA.; - GO:0003690 - double-stranded DNA binding - - - - - - - - - - - - GO:0003697 - - - - - - GO:0003698 - - - - - - GO:0003699 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with single-stranded DNA. - GO:0003697 - single-stranded DNA binding - ssDNA binding - - - - - - - - - - - - - - 4325 "transcription factor activity" - - - - - - GO:0000130 - - - - - - GO:0003700 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex. - GO:0003700 - transcription factor - - - - - - - - - - - - - GO:0003711 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule following transcription initiation. - GO:0003711 - transcription elongation factor - transcription elongation regulator - transcriptional elongation regulator - - - - - - - - - - - - - GO:0003715 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any activity that brings about termination of transcription. - GO:0003715 - transcription termination factor - transcriptional termination factor - - - - - - - - - - - - - 1805 "RNA binding" - - - - - - GO:0003723 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an RNA molecule or a portion thereof. - GO:0003723 - RNA binding - - - - - - - - - - - - - GO:0003725 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with double-stranded RNA. - GO:0003725 - double-stranded RNA binding - - - - - - - - - - - - - GO:0003729 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA) or messenger RNA (mRNA). - GO:0003729 - mRNA binding - - - - - - - - - - - - - GO:0003735 - - - - - - GO:0003736 - - - - - - GO:0003737 - - - - - - GO:0003738 - - - - - - GO:0003739 - - - - - - GO:0003740 - - - - - - GO:0003741 - - - - - - GO:0003742 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The action of a molecule that contributes to the structural integrity of the ribosome. - GO:0003735 - ribosomal RNA - ribosomal protein - structural constituent of ribosome - - - - - - - - - - - - 10611 "translation initiation factor activity" - - - - - - GO:0003743 - - - - - - GO:0003744 - - - - - - GO:0003745 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. - GO:0003743 - translation initiation factor - - - - - - - - - - - - 10616 "translation elongation factor activity" - - - - - - GO:0003746 - - - - - - GO:0008182 - - - - - - GO:0008183 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Functions in chain elongation during polypeptide synthesis at the ribosome. - GO:0003746 - translation elongation factor - - - - - - - - - - - - GO:0003747 - - - - - - GO:0003748 - - - - - - GO:0003749 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. - GO:0003747 - translation release factor - - - - - - - - - - - - 5.2.1.8 - - - - - - GO:0003755 - - - - - - GO:0004752 - - - - - - GO:0042028 - - - - - - PEPTIDYLPROLYL-ISOMERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). - FK506-sensitive peptidyl-prolyl cis-trans isomerase - GO:0003755 - PPIase - cis-trans proline isomerase - cyclophilin - cyclophilin-type peptidyl-prolyl cis-trans isomerase - immunophilin - juglone-sensitive cis-trans proline isomerase - juglone-sensitive peptidyl-prolyl cis-trans isomerase - parvulin - peptide bond isomerase - peptidyl-prolyl cis-trans isomerase - peptidyl-prolyl isomerase B reaction - peptidylproline cis-trans-isomerase - peptidylprolyl cis-trans isomerase - peptidylprolyl isomerase - rotamase - - - - - - - - - - - - - GO:0003774 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate. - GO:0003774 - motor - - - - - - - - - - - - - 3.2.1.17 - - - - - - 3.2.1.17-RXN - - - - - - GO:0003796 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of the prokaryotes cell walls and between N-acetyl-D-glucosamine residues in chitodextrins. - 1 4-N-acetylmuramidase - GO:0003796 - L-7001 - N O-diacetylmuramidase - PR1-lysozyme - globulin G - globulin G1 - lysozyme - lysozyme g - mucopeptide N-acetylmuramoylhydrolase - mucopeptide glucohydrolase - muramidase - peptidoglycan N-acetylmuramoylhydrolase - - - - - - - - - - - - 11549 "protein-glutamine gamma-glutamyltransferase activity" - - - - - - 2.3.2.13 - - - - - - 2.3.2.13-RXN - - - - - - AA0124 - - - - - - GO:0003810 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links. - GO:0003810 - R-glutaminyl-peptide:amine gamma-glutamyl transferase - TGase - factor XIIIa - fibrin stabilizing factor - fibrinoligase - glutaminylpeptide gamma-glutamyltransferase - polyamine transglutaminase - protein-glutamine gamma-glutamyltransferase - protein-glutamine:amine gamma-glutamyltransferase - tissue transglutaminase - transglutaminase - - - - - - - - - - - - - Enzyme - - - - - - GO:0003824 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. - GO:0003824 - catalytic - enzyme - - - - - - - - - - - - 11628 "gamma-glutamyltransferase activity" - - - - - - 2.3.2.2 - - - - - - GAMMA-GLUTAMYLTRANSFERASE-RXN - - - - - - GO:0003840 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (5-L-glutamyl)-peptide + an amino acid = peptide + 5-L-glutamyl-amino acid. - 5-glutamyltransferase - GO:0003840 - L-gamma-glutamyl transpeptidase - L-gamma-glutamyltransferase - L-glutamyltransferase - alpha-glutamyl transpeptidase - gamma-GPT - gamma-GT - gamma-GTP - gamma-glutamyl peptidyltransferase - gamma-glutamyl transpeptidase - gamma-glutamyltransferase - glutamyl transpeptidase - - - - - - - - - - - - 2.3.1.51 - - - - - - GO:0003841 - - - - - - GO:0004469 - - - - - - RXN-1623 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate. - 1-acyl-sn-glycero-3-phosphate acyltransferase - 1-acyl-sn-glycerol 3-phosphate acyltransferase - 1-acyl-sn-glycerol-3-phosphate acyltransferase - 1-acylglycero-3-phosphate acyltransferase - 1-acylglycerol-3-phosphate O-acyltransferase - 1-acylglycerolphosphate acyltransferase - 1-acylglycerophosphate acyltransferase - GO:0003841 - acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase - lysophosphatidate acyltransferase - lysophosphatidic acid-acyltransferase - - - - - - - - - - - - 1.5.1.12 - - - - - - 11630 "1-pyrroline-5-carboxylate dehydrogenase activity" - - - - - - GO:0003842 - - - - - - PYRROLINECARBDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH + H+. - 1-pyrroline dehydrogenase - 1-pyrroline-5-carboxylate dehydrogenase - 1-pyrroline-5-carboxylate:NAD+ oxidoreductase - GO:0003842 - L-pyrroline-5-carboxylate-NAD+ oxidoreductase - delta1-pyrroline-5-carboxylate dehydrogenase - pyrroline-5-carboxylate dehydrogenase - pyrroline-5-carboxylic acid dehydrogenase - - - - - - - - - - - - - 11632 "1,4-alpha-glucan branching enzyme activity" - - - - - - 2.4.1.18 - - - - - - GLYCOGEN-BRANCH-RXN - - - - - - GO:0003844 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain. - 1 - 1 4-alpha-D-glucan:1 4-alpha-D-glucan - 1,4-alpha-glucan branching enzyme - GO:0003844 - Q-enzyme - activity - alpha-1 4-glucan:alpha-1 4-glucan-6-glycosyltransferase - alpha-glucan-branching glycosyltransferase - amylose isomerase - branching enzyme - branching glycosyltransferase - enzymatic branching factor - enzyme Q - glucosan transglycosylase - glycogen branching enzyme - plant branching enzyme - starch branching enzyme - - - - - - - - - - - - 2.7.6.3 - - - - - - GO:0003848 - - - - - - H2PTERIDINEPYROPHOSPHOKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine = AMP + 2-amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine. - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase - 6-hydroxymethyl-7 8-dihydropterin diphosphokinase - 6-hydroxymethyl-7 8-dihydropterin pyrophosphokinase - 7 8-dihydro-6-hydroxymethylpterin diphosphokinase - 7 8-dihydro-6-hydroxymethylpterin pyrophosphokinase - 7 8-dihydroxymethylpterin-pyrophosphokinase - ATP:2-amino-4-hydroxy-6-hydroxymethyl-7 8-dihydropteridine 6'-diphosphotransferase - GO:0003848 - H2-pteridine-CH2OH pyrophosphokinase - HPPK - hydroxymethyldihydropteridine pyrophosphokinase - - - - - - - - - - - - - 2.5.1.54 - - - - - - DAHPSYN-RXN - - - - - - GO:0003849 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphoenolpyruvate + D-erythrose 4-phosphate + H2O = 2-dehydro-3-deoxy-D-arabino-heptonate 7-phosphate + phosphate. - 2-dehydro-3-deoxy-phosphoheptonate aldolase - 2-dehydro-3-deoxyphosphoheptonate aldolase - 2-keto-3-deoxy-D-arabino-heptonic acid 7-phosphate synthetase - 3-deoxy-7-phosphoheptulonate synthase - 3-deoxy-D-arabino-2-heptulosonic acid 7-phosphate synthetase - 3-deoxy-D-arabino-heptolosonate-7-phosphate synthetase - 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase - 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate - 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase - 7-phospho-2-keto-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase - D-erythrose-4-phosphate-lyase - DAH7-P synthase - DAHP synthase - DHAP synthase - DS-Co - DS-Mn - GO:0003849 - KDPH synthase - KDPH synthetase - deoxy-D-arabino-heptulosonate-7-phosphate synthetase - phospho-2-dehydro-3-deoxyheptonate aldolase - phospho-2-keto-3-deoxyheptanoate aldolase - phospho-2-keto-3-deoxyheptonate aldolase - phospho-2-keto-3-deoxyheptonic aldolase - phospho-2-oxo-3-deoxyheptonate aldolase - phosphoenolpyruvate:D-erythrose-4-phosphate - - - - - - - - - - - - - 2-ISOPROPYLMALATESYN-RXN - - - - - - 2.3.3.13 - - - - - - GO:0003852 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + 3-methyl-2-oxobutanoate + H2O = (2S)-2-isopropylmalate + CoA. - 2-isopropylmalate synthase - 3-carboxy-3-hydroxy-4-methylpentanoate 3-methyl-2-oxobutanoate-lyase - GO:0003852 - acetyl-CoA:3-methyl-2-oxobutanoate C-acetyltransferase - alpha-IPM synthetase - alpha-isopropylmalate synthase - alpha-isopropylmalate synthetase - alpha-isopropylmalic synthetase - isopropylmalate synthase - isopropylmalate synthetase - - - - - - - - - - - - - 3-DEHYDROQUINATE-DEHYDRATASE-RXN - - - - - - 4.2.1.10 - - - - - - GO:0003855 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H2O. - 3-dehydroquinase - 3-dehydroquinate dehydratase - 3-dehydroquinate hydro-lyase - 3-dehydroquinate hydrolase - 5-dehydroquinase - 5-dehydroquinate dehydratase - 5-dehydroquinate hydro-lyase - DHQase - GO:0003855 - dehydroquinase - dehydroquinate dehydratase - - - - - - - - - - - - - 3-DEHYDROQUINATE-SYNTHASE-RXN - - - - - - 4.2.3.4 - - - - - - GO:0003856 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-deoxy-arabino-heptulosonate 7-phosphate = 3-dehydroquinate + phosphate. - 3-dehydroquinate synthase - 3-dehydroquinate synthetase - 3-deoxy-arabino-heptulonate-7-phosphate phosphate-lyase - 3-deoxy-arabino-heptulosonate-7-phosphate phosphate-lyase - 5-dehydroquinate synthase - 5-dehydroquinic acid synthetase - GO:0003856 - dehydroquinate synthase - - - - - - - - - - - - - 1.1.1.35 - - - - - - 11645 "3-hydroxyacyl-CoA dehydrogenase activity" - - - - - - GO:0003857 - - - - - - OHACYL-COA-DEHYDROG-RXN - - - - - - e0664 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H+. - 3-hydroxyacyl-CoA dehydrogenase - GO:0003857 - L-3-hydroxyacyl CoA dehydrogenase - L-3-hydroxyacyl coenzyme A dehydrogenase - beta-hydroxyacyl dehydrogenase - beta-hydroxyacyl-coenzyme A synthetase - beta-hydroxyacylcoenzyme A dehydrogenase - beta-hydroxybutyrylcoenzyme A dehydrogenase - beta-keto-reductase - beta-ketoacyl-CoA reductase - - - - - - - - - - - - - 1.1.1.30 - - - - - - 11646 "3-hydroxybutyrate dehydrogenase activity" - - - - - - 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN - - - - - - GO:0003858 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+. - 3-hydroxybutyrate dehydrogenase - D-beta-hydroxybutyrate dehydrogenase - GO:0003858 - - - - - - - - - - - - - 3-ISOPROPYLMALISOM-RXN - - - - - - 4.2.1.33 - - - - - - GO:0003861 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-isopropylmalate = 2-isopropylmaleate + H2O. - 3-isopropylmalate dehydratase - GO:0003861 - alpha-IPM isomerase - alpha-isopropylmalate isomerase - beta-isopropylmalate dehydratase - hydro-lyase - isopropylmalate isomerase - - - - - - - - - - - - - 1.1.1.85 - - - - - - 3-ISOPROPYLMALDEHYDROG-RXN - - - - - - GO:0003862 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-carboxy-2-hydroxy-4-methylpentanoate + NAD+ = 3-carboxy-4-methyl-2-oxopentanoate + NADH + H+. - 3-carboxy-2-hydroxy-4-methylpentanoate:NAD+ oxidoreductase - 3-isopropylmalate dehydrogenase - GO:0003862 - IMDH - IPMDH - beta-IPM dehydrogenase - beta-isopropylmalate dehydrogenase - beta-isopropylmalic enzyme - oxidoreductase - threo-Ds-3-isopropylmalate dehydrogenase - - - - - - - - - - - - - 1.2.4.4 - - - - - - 1.2.4.4-RXN - - - - - - 11663 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" - - - - - - GO:0003863 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)dihydrolipoamide + CO2. - 2-oxoisocaproate dehydrogenase - 2-oxoisovalerate dehydrogenase - 3-methyl-2-oxobutanoate dehydrogenase - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) - 3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue 2-oxidoreductase - 3-methyl-2-oxobutanoate:lipoamide oxidoreductase - BCKDH - BCOAD - GO:0003863 - alpha-keto-alpha-methylvalerate dehydrogenase - alpha-ketoisocaproate dehydrogenase - alpha-ketoisocaproic dehydrogenase - alpha-ketoisocaproic-alpha-keto-alpha-methylvaleric dehydrogenase - alpha-ketoisovalerate dehydrogenase - alpha-oxoisocaproate dehydrogenase - branched chain keto acid dehydrogenase - branched-chain 2-keto acid dehydrogenase - branched-chain 2-oxo acid dehydrogenase - branched-chain alpha-keto acid dehydrogenase - branched-chain alpha-oxo acid dehydrogenase - branched-chain dehydrogenase - branched-chain keto acid dehydrogenase - branched-chain ketoacid dehydrogenase - dehydrogenase 2-oxoisovalerate - dehydrogenase branched chain alpha-keto acid - - - - - - - - - - - - - 2.1.2.11 - - - - - - 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN - - - - - - GO:0003864 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate. - 3-methyl-2-oxobutanoate hydroxymethyltransferase - 5 10-methylene tetrahydrofolate:alpha-ketoisovalerate hydroxymethyltransferase - 5 10-methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase - GO:0003864 - alpha-ketoisovalerate hydroxymethyltransferase - dehydropantoate hydroxymethyltransferase - ketopantoate hydroxymethyltransferase - oxopantoate hydroxymethyltransferase - - - - - - - - - - - - - 2.5.1.19 - - - - - - 2.5.1.19-RXN - - - - - - GO:0003866 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. - 3-enol-pyruvoylshikimate-5-phosphate synthase - 3-phosphoshikimate 1-carboxyvinyltransferase - 5-enolpyruvylshikimate-3-phosphate synthase - EPSP synthase - GO:0003866 - phosphoenolpyruvate:3-phosphoshikimate - - - - - - - - - - - - - 2.6.1.19 - - - - - - GABATRANSAM-RXN - - - - - - GO:0003867 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4-aminobutanoate + amino group acceptor = succinate semialdehyde + amino acid. - 4-aminobutanoate transaminase - 4-aminobutyrate aminotransferase - 4-aminobutyrate transaminase - 4-aminobutyric acid aminotransferase - GABA aminotransferase - GABA transaminase - GABA transferase - GO:0003867 - aminobutyrate aminotransferase - aminobutyrate transaminase - beta-alanine aminotransferase - beta-alanine--oxoglutarate aminotransferase - beta-alanine-oxoglutarate transaminase - gamma-amino-N-butyrate transaminase - gamma-aminobutyrate aminotransaminase - gamma-aminobutyrate transaminase - gamma-aminobutyric acid aminotransferase - gamma-aminobutyric acid transaminase - gamma-aminobutyric transaminase - glutamate-succinic semialdehyde transaminase - - - - - - - - - - - - 2.1.1.14 - - - - - - GO:0003871 - - - - - - HOMOCYSMET-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-methyltetrahydropteroyltri-L-glutamate + L-homocysteine = tetrahydropteroyltri-L-glutamate + L-methionine. - 5-methyltetrahydropteroyltri-L-glutamate:L-homocysteine S-methyltransferase - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase - GO:0003871 - MetE - cobalamin-independent methionine synthase - homocysteine methylase - methionine synthase - methyltetrahydropteroylpolyglutamate:homocysteine methyltransferase - methyltransferase tetrahydropteroylglutamate-homocysteine transmethylase - tetrahydropteroylglutamate-homocysteine transmethylase - tetrahydropteroyltriglutamate methyltransferase - - - - - - - - - - - - - 11692 "6-phosphofructokinase activity" - - - - - - 2.7.1.11 - - - - - - 6PFRUCTPHOS-RXN - - - - - - GO:0003872 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate. - 6-phosphofructokinase - 6-phosphofructokinase reduction - 6-phosphofructose 1-kinase - ATP-dependent phosphofructokinase - ATP:D-fructose-6-phosphate 1-phosphotransferase - D-fructose-6-phosphate 1-phosphotransferase - GO:0003872 - PFK - fructose 6-phosphate kinase - fructose 6-phosphokinase - nucleotide triphosphate-dependent phosphofructokinase - phospho-1 6-fructokinase - phosphofructokinase - phosphofructokinase I - phosphohexokinase - - - - - - - - - - - - - 4.2.3.12 - - - - - - 4.2.3.12-RXN - - - - - - GO:0003874 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate. - 2-dihydroxy-3-triphosphooxypropyl]-7 8-dihydroxypteridine triphosphate lyase - 2-dihydroxy-3-triphosphooxypropyl]-7 8-dihydroxypteridine triphosphate-lyase - 6-pyruvoyl tetrahydrobiopterin synthase - 6-pyruvoyltetrahydropterin synthase - GO:0003874 - PTPS - - - - - - - - - - - - - 2.3.3.8 - - - - - - ATP-CITRATE-PRO-S--LYASE-RXN - - - - - - GO:0003878 - - - - - - GO:0046913 - - - - - - PWY-5172 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ADP + phosphate + acetyl-CoA + oxaloacetate = ATP + citrate + CoA. - ATP citrate - ATP citrate synthase - ATP-citrate - ATP-citric lyase - ATP:citrate oxaloacetate-lyase - GO:0003878 - acetyl-CoA:oxaloacetate C-acetyltransferase ADP-phosphorylating] - acetyl-CoA:oxaloacetate acetyltransferase - adenosine triphosphate citrate lyase - citrate cleavage enzyme - citrate-ATP lyase - citric cleavage enzyme - - - - - - - - - - - - - 2.4.2.17 - - - - - - ATPPHOSPHORIBOSYLTRANS-RXN - - - - - - GO:0003879 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate. - ATP phosphoribosyltransferase - GO:0003879 - adenosine triphosphate phosphoribosyltransferase - phospho-alpha-D-ribosyl-transferase - phosphoribosyl ATP synthetase - phosphoribosyl ATP:pyrophosphate phosphoribosyltransferase - phosphoribosyl-ATP diphosphorylase - phosphoribosyl-ATP pyrophosphorylase - phosphoribosyl-ATP:pyrophosphate-phosphoribosyl phosphotransferase - phosphoribosyladenosine triphosphate pyrophosphorylase - phosphoribosyladenosine triphosphate synthetase - phosphoribosyladenosine triphosphate:pyrophosphate phosphoribosyltransferase - - - - - - - - - - - - 2.7.8.8 - - - - - - GO:0003882 - - - - - - PHOSPHASERSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CDP-diacylglycerol + L-serine = CMP + O-sn-phosphatidyl-L-serine. - CDP-diacylglycerol-L-serine O-phosphatidyltransferase - CDP-diacylglycerol-serine O-phosphatidyltransferase - CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase - CDP-diglyceride-L-serine phosphatidyltransferase - CDP-diglyceride:serine phosphatidyltransferase - CDP-diglycerine-serine O-phosphatidyltransferase - CDPdiacylglycerol-serine O-phosphatidyltransferase - CDPdiglyceride-serine O-phosphatidyltransferase - GO:0003882 - PS synthase - cytidine 5'-diphospho-1 2-diacyl-sn-glycerol O-phosphatidyltransferase - cytidine 5'-diphospho-1 2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase - cytidine diphosphoglyceride-serine O-phosphatidyltransferase - phosphatidylserine synthase - phosphatidylserine synthetase - serine exchange enzyme - - - - - - - - - - - - - 11718 "CTP synthase activity" - - - - - - 6.3.4.2 - - - - - - CTPSYN-RXN - - - - - - GO:0003883 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UTP + NH3 = ADP + phosphate + CTP. - CTP synthase - CTP synthetase - GO:0003883 - UTP--ammonia ligase - UTP:ammonia ligase - cytidine 5'-triphosphate synthetase - cytidine triphosphate synthetase - uridine triphosphate aminase - - - - - - - - - - - - 1.1.3.37 - - - - - - 1.1.3.37-RXN - - - - - - GO:0003885 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-arabinono-1,4-lactone + O2 = dehydro-D-arabinono-1,4-lactone + H2O2. - D-arabinono-1 4-lactone:oxygen oxidoreductase - D-arabinono-1,4-lactone oxidase - GO:0003885 - - - - - - - - - - - - - 2.1.1.37 - - - - - - 2.1.1.73-RXN - - - - - - GO:0003886 - - - - - - GO:0008326 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine. - DNA (cytosine-5-)-methyltransferase - DNA 5-cytosine methylase - DNA cytosine C5 methylase - DNA cytosine c5 methylase - DNA cytosine methylase - DNA-cytosine 5-methylase - DNA-cytosine methyltransferase - GO:0003886 - S-adenosyl-L-methionine:DNA - cytosine 5-methyltransferase - cytosine DNA methylase - cytosine DNA methyltransferase - cytosine-specific DNA methyltransferase - deoxyribonucleic - deoxyribonucleic acid - deoxyribonucleic methylase - methylphosphotriester-DNA methyltransferase - modification methylase - restriction-modification system - site-specific DNA-methyltransferase - type II DNA methylase - - - - - - - - - - - - 11722 "DNA-directed DNA polymerase activity" - - - - - - 2.7.7.- - - - - - - 2.7.7.7 - - - - - - DNA-DIRECTED-DNA-POLYMERASE-RXN - - - - - - GO:0003887 - - - - - - GO:0003888 - - - - - - GO:0003889 - - - - - - GO:0003890 - - - - - - GO:0003891 - - - - - - GO:0003893 - - - - - - GO:0003894 - - - - - - GO:0003895 - - - - - - GO:0008723 - - - - - - GO:0015999 - - - - - - GO:0016000 - - - - - - GO:0016448 - - - - - - GO:0016449 - - - - - - GO:0016450 - - - - - - GO:0016451 - - - - - - GO:0016452 - - - - - - GO:0019984 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.; - DNA duplicase - DNA nucleotidyltransferase - DNA polymerase I - DNA polymerase II - DNA polymerase III - DNA polymerase V - DNA polymerase alpha - DNA polymerase beta - DNA polymerase gamma - DNA replicase - DNA-dependent DNA polymerase - DNA-directed DNA polymerase - GO:0003887 - Klenow fragment - Taq DNA polymerase - Taq Pol I - Tca DNA polymerase - alpha DNA polymerase - beta DNA polymerase - delta DNA polymerase - deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase - deoxyribonucleic acid duplicase - deoxyribonucleic duplicase - deoxyribonucleic polymerase I - duplicase - epsilon DNA polymerase - eta DNA polymerase - gamma DNA-directed DNA polymerase - iota DNA polymerase - kappa DNA polymerase - lambda DNA polymerase - mu DNA polymerase - nu DNA polymerase - sequenase - sigma DNA polymerase - theta DNA polymerase - zeta DNA polymerase - - - - - - - - - - - - - 2.7.7.- - - - - - - GO:0003896 - - - - - - GO:0003897 - - - - - - GO:0003898 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. Catalyzed by a DNA-directed RNA polymerase that forms a complex with alpha DNA polymerase. - DNA primase - GO:0003896 - - - - - - - - - - - - 11745 "DNA-directed RNA polymerase activity" - - - - - - 2.7.7.6 - - - - - - DNA-DIRECTED-RNA-POLYMERASE-RXN - - - - - - GO:0000129 - - - - - - GO:0003899 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. - C RNA formation factors - C ribonucleic acid formation factors - DNA-dependent RNA nucleotidyltransferase - DNA-dependent RNA polymerase - DNA-dependent ribonucleate nucleotidyltransferase - DNA-directed RNA polymerase - DNA-directed RNA polymerase I - DNA-directed RNA polymerase II - DNA-directed RNA polymerase III - GO:0003899 - RNA nucleotidyltransferase - RNA polymerase I - RNA polymerase II - RNA polymerase III - deoxyribonucleic acid-dependent ribonucleic acid polymerase - nucleoside-triphosphate:RNA nucleotidyltransferase - transcriptase - - - - - - - - - - - - - 3.2.2.21 - - - - - - 3.2.2.21-RXN - - - - - - GO:0003905 - - - - - - GO:0004036 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of alkylated DNA; recognizes and removes alkylated purines and pyrimidines by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic or apyrimidinic (AP) site. Enzyme has broad substrate specificity, being able to recognize alkylpurines, alkylpyrimidines or ethenopurines. - 3-methyladenine DNA glycosylase II - AlkA - DNA glycosidase II - DNA-3-methyladenine glycosidase II - DNA-3-methyladenine glycosylase II - GO:0003905 - alkylated-DNA glycohydrolase - alkylbase DNA N-glycosylase - alkylbase DNA glycosidase - deoxyribonucleate 3-methyladenine glycosidase II - - - - - - - - - - - - - 12450 "DNA-(apurinic or apyrimidinic site) lyase activity" - - - - - - 4.2.99.18 - - - - - - 4.2.99.18-RXN - - - - - - GO:0003906 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate. - 5'-phosphomonoester-lyase - AP endonuclease class I - AP lyase - AP site-DNA 5'-phosphomonoester-lyase - DNA-(apurinic or apyrimidinic site) lyase - E. coli endonuclease III - GO:0003906 - Micrococcus luteus UV endonuclease - Phage-T4 UV endonuclease - UV endonuclease - X-ray endonuclease III - deoxyribonuclease - endodeoxyribonuclease - endonuclease VIII - micrococcus luteus UV endonuclease - phage-T4 UV endonuclease - - - - - - - - - - - - 12455 "methylated-DNA-[protein]-cysteine S-methyltransferase activity" - - - - - - 2.1.1.63 - - - - - - 2.1.1.63-RXN - - - - - - GO:0003908 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: DNA (containing 6-O-methylguanine) + (protein)-L-cysteine = DNA (without 6-O-methylguanine) + protein S-methyl-L-cysteine. - 6-O-methylguanine-DNA methyltransferase - DNA-6-O-methylguanine:[protein]-L-cysteine S-methyltransferase - DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase - GO:0003908 - MGMT - O-6-methylguanine-DNA-alkyltransferase - O6-alkylguanine-DNA alkyltransferase - methylated-DNA-[protein]-cysteine S-methyltransferase - methylated-DNA-protein-cysteine S-methyltransferase - - - - - - - - - - - - 6.5.1.1 - - - - - - DNA-LIGASE-ATP-RXN - - - - - - GO:0003910 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m). - DNA joinase - DNA ligase (ATP) - DNA repair enzyme - DNA-joining enzyme - GO:0003910 - deoxyribonucleate ligase - deoxyribonucleic acid joinase - deoxyribonucleic acid ligase - deoxyribonucleic acid repair enzyme - deoxyribonucleic acid-joining enzyme - deoxyribonucleic joinase - deoxyribonucleic ligase - deoxyribonucleic repair enzyme - deoxyribonucleic-joining enzyme - ligase - polydeoxyribonucleotide synthase - polynucleotide ligase - sealase - - - - - - - - - - - - 6.5.1.2 - - - - - - DNA-LIGASE-NAD+-RXN - - - - - - GO:0003911 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NAD+ + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + nicotinamide nucleotide + deoxyribonucleotide(n+m). - DNA joinase - DNA ligase - DNA ligase (NAD+) - DNA repair enzyme - DNA-joining enzyme - GO:0003911 - Polydeoxyribonucleotide synthase - deoxyribonucleate ligase - deoxyribonucleic acid joinase - deoxyribonucleic acid ligase - deoxyribonucleic joinase - deoxyribonucleic ligase - deoxyribonucleic repair enzyme - deoxyribonucleic-joining enzyme - ligase - polydeoxyribonucleotide synthase - polynucleotide ligase - polynucleotide synthetase - - - - - - - - - - - - - - 5.99.1.- - - - - - - 5.99.1.2-RXN - - - - - - GO:0003916 - - - - - - GO:0009387 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. - DNA topoisomerase - GO:0003916 - - - - - - - - - - - - - 5.99.1.2 - - - - - - 5.99.1.2-RXN - - - - - - GO:0003917 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.; - DNA topoisomerase I - DNA topoisomerase type I - GO:0003917 - deoxyribonucleate topoisomerase - nicking-closing enzyme - omega-protein - relaxing enzyme - swivelase - topoisomerase - type I DNA topoisomerase - type I topoisomerase - untwisting enzyme - - - - - - - - - - - - - 5.99.1.3 - - - - - - 5.99.1.3-RXN - - - - - - GO:0003918 - - - - - - Type_II_topoisomerase - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. - DNA gyrase - DNA topoisomerase - DNA topoisomerase (ATP-hydrolyzing) - DNA topoisomerase II - DNA topoisomerase IV - DNA topoisomerase type II - DNA-gyrase - GO:0003918 - deoxyribonucleate topoisomerase - deoxyribonucleic topoisomerase - topoisomerase - topoisomerase II - type II DNA topoisomerase - - - - - - - - - - - - 12494 "FMN adenylyltransferase activity" - - - - - - 2.7.7.2 - - - - - - FADSYN-RXN - - - - - - GO:0003919 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + FMN = diphosphate + FAD. - ATP:FMN adenylyltransferase - FAD diphosphorylase - FAD pyrophosphorylase - FAD synthetase - FMN adenylyltransferase - GO:0003919 - adenosine triphosphate-riboflavin mononucleotide transadenylase - adenosine triphosphate-riboflavine mononucleotide transadenylase - flavin adenine dinucleotide synthetase - riboflavin adenine dinucleotide pyrophosphorylase - riboflavin mononucleotide adenylyltransferase - riboflavine adenine dinucleotide adenylyltransferase - - - - - - - - - - - - 1.7.1.7 - - - - - - GMP-REDUCT-RXN - - - - - - GO:0003920 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: inosine 5'-phosphate + NH3 + NADP+ = guanosine 5'-phosphate + NADPH + H+. - GMP reductase - GO:0003920 - NADPH2:guanosine-5'-phosphate oxidoreductase - NADPH:GMP oxidoreductase - NADPH:guanosine-5'-phosphate oxidoreductase - guanosine 5'-monophosphate oxidoreductase - guanosine 5'-monophosphate reductase - guanosine 5'-phosphate reductase - guanosine monophosphate reductase - guanylate reductase - inosine-5'-phosphate:NADP+ oxidoreductase - - - - - - - - - - - - - 6.3.5.2 - - - - - - GMP-SYN-GLUT-RXN - - - - - - GMP_synthase_(glutamine-hydrolysing) - - - - - - GO:0003922 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + xanthosine 5'-phosphate + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate. - GMP synthase - GMP synthase (glutamine-hydrolyzing) - GMP synthetase - GO:0003922 - glutamine amidotransferase - guanosine 5'-monophosphate synthetase - guanosine monophosphate synthetase - guanylate synthetase - xanthosine 5'-phosphate amidotransferase - xanthosine-5'-phosphate:L-glutamine amido-ligase - - - - - - - - - - - - - 12513 "GTPase activity" - - - - - - GO:0003924 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: GTP + H2O = GDP + phosphate. - ARF small monomeric GTPase - GO:0003924 - GTPase - RHEB small monomeric GTPase - Rab small monomeric GTPase - Ran small monomeric GTPase - Ras small monomeric GTPase - Rho small monomeric GTPase - Sar small monomeric GTPase - dynamin GTPase - heterotrimeric G-protein GTPase - heterotrimeric G-protein GTPase alpha-subunit - heterotrimeric G-protein GTPase beta-subunit - heterotrimeric G-protein GTPase gamma-subunit - hydrolase activity acting on acid anhydrides acting on GTP involved in cellular and subcellular movement - protein-synthesizing GTPase - protein-synthesizing GTPase activity elongation - protein-synthesizing GTPase activity initiation - protein-synthesizing GTPase activity termination - signal-recognition-particle GTPase - small monomeric GTPase - tubulin GTPase - - - - - - - - - - - - 3.5.4.16 - - - - - - GO:0003934 - - - - - - GTP-CYCLOHYDRO-I-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate. - GO:0003934 - GTP 7 8-8 9-dihydrolase - GTP 8-formylhydrolase - GTP cyclohydrolase I - dihydroneopterin triphosphate synthase - guanosine triphosphate 8-deformylase - guanosine triphosphate cyclohydrolase - - - - - - - - - - - - 3.5.4.25 - - - - - - GO:0003935 - - - - - - GTP-CYCLOHYDRO-II-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: GTP + 3 H2O = formate + 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine + diphosphate. - GO:0003935 - GTP 7 8-8 9-dihydrolase - GTP cyclohydrolase II - GTP-8-formylhydrolase - guanosine triphosphate cyclohydrolase II - - - - - - - - - - - - 12558 "IMP cyclohydrolase activity" - - - - - - 3.5.4.10 - - - - - - GO:0003937 - - - - - - IMPCYCLOHYDROLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: IMP + H2O = 5-formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide. - GO:0003937 - IMP 1 2-hydrolase - IMP cyclohydrolase - IMP synthetase - inosinate cyclohydrolase - inosinicase - - - - - - - - - - - - - 1.1.1.205 - - - - - - 12563 "IMP dehydrogenase activity" - - - - - - GO:0003938 - - - - - - IMP-DEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: inosine 5'-phosphate + NAD+ + H2O = xanthosine 5'-phosphate + NADH + H+. - GO:0003938 - IMP dehydrogenase - IMP oxidoreductase - IMP:NAD+ oxidoreductase - inosinate dehydrogenase - inosine 5'-monophosphate dehydrogenase - inosine monophosphate dehydrogenase - inosine monophosphate oxidoreductase - inosine-5'-phosphate dehydrogenase - inosinic acid dehydrogenase - - - - - - - - - - - - - 1.1.1.14 - - - - - - GO:0003939 - - - - - - L-IDITOL-2-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-iditol + NAD+ = L-sorbose + NADH + H+. - GO:0003939 - L-iditol 2-dehydrogenase - L-iditol dehydrogenase - L-iditol:NAD oxidoreductase - L-iditol:NAD+ 5-oxidoreductase - NAD+-dependent sorbitol dehydrogenase - NAD-dependent sorbitol dehydrogenase - NAD-sorbitol dehydrogenase - glucitol dehydrogenase - polyol dehydrogenase - sorbitol dehydrogenase - - - - - - - - - - - - 4.3.1.17 - - - - - - 4.3.1.17-RXN - - - - - - GO:0003941 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-serine = pyruvate + NH3. - GO:0003941 - L-hydroxyaminoacid dehydratase - L-serine ammonia-lyase - L-serine deaminase - L-serine dehydratase - L-serine hydro-lyase - serine deaminase - - - - - - - - - - - - - 1.2.1.38 - - - - - - GO:0003942 - - - - - - N-ACETYLGLUTPREDUCT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+. - GO:0003942 - N-acetyl-L-glutamate gamma-semialdehyde:NADP oxidoreductase - N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase - N-acetyl-gamma-glutamyl-phosphate reductase - N-acetyl-glutamate semialdehyde dehydrogenase - N-acetylglutamate 5-semialdehyde dehydrogenase - N-acetylglutamic gamma-semialdehyde dehydrogenase - NAGSA dehydrogenase - reductase acetyl-gamma-glutamyl phosphate - - - - - - - - - - - - - 5.3.1.16 - - - - - - GO:0003949 - - - - - - PRIBFAICARPISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-(5'-phospho-D-ribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide = N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide. - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase - GO:0003949 - aldose-ketose-isomerase - aminophosphoribosylimidazolecarboxamide isomerase - isomerase - ketol-isomerase - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase - phosphoribosylformiminoaminophosphoribosylimidazolecarboxamide isomerase - - - - - - - - - - - - - - 12598 "NAD+ kinase activity" - - - - - - 2.7.1.23 - - - - - - GO:0003951 - - - - - - NAD-KIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + NAD+ = ADP + NADP+. - ATP:NAD+ 2'-phosphotransferase - DPN kinase - GO:0003951 - NAD kinase - NAD+ kinase - NADK - nicotinamide adenine dinucleotide kinase - - - - - - - - - - - - - 12600 "NAD+ synthase (glutamine-hydrolyzing) activity" - - - - - - 6.3.5.1 - - - - - - GO:0003952 - - - - - - NAD+_synthase_(glutamine-hydrolysing) - - - - - - NAD-SYNTH-GLN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate. - DPN synthetase - GO:0003952 - NAD synthase - NAD synthetase - NAD+ synthase - NAD+ synthase (glutamine-hydrolyzing) - NAD+ synthetase - deamido-NAD+:L-glutamine amido-ligase - desamidonicotinamide adenine dinucleotide amidotransferase - nicotinamide adenine dinucleotide synthetase - synthetase - - - - - - - - - - - - - 1.6.99.3 - - - - - - GO:0003954 - - - - - - NADH-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor. - DPNH diaphorase - GO:0003954 - NADH dehydrogenase - NADH diaphorase - NADH hydrogenase - NADH oxidoreductase - NADH-menadione oxidoreductase - NADH2 dehydrogenase - NADH:acceptor oxidoreductase - NADH:cytochrome c oxidoreductase - beta-NADH dehydrogenase dinucleotide - cytochrome c reductase - diaphorase - dihydrocodehydrogenase I dehydrogenase - dihydronicotinamide adenine dinucleotide dehydrogenase - diphosphopyridine diaphorase - diphosphopyrinase - oxidoreductase - reduced diphosphopyridine nucleotide diaphorase - type 1 dehydrogenase - type I dehydrogenase - - - - - - - - - - - - 1.6.2.4 - - - - - - GO:0003958 - - - - - - NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein. - CPR - FAD-cytochrome c reductase - GO:0003958 - NADP--cytochrome c reductase - NADP--cytochrome reductase - NADPH--cytochrome P450 oxidoreductase - NADPH--cytochrome P450 reductase - NADPH--cytochrome c oxidoreductase - NADPH--cytochrome c reductase - NADPH--ferricytochrome c oxidoreductase - NADPH--ferrihemoprotein reductase - NADPH-cytochrome P-450 oxidoreductase - NADPH-cytochrome p-450 reductase - NADPH-dependent cytochrome c reductase - NADPH-ferrihemoprotein reductase - NADPH-hemoprotein reductase - NADPH:P-450 reductase - NADPH:P450 reductase - NADPH:cytochrome P450 reductase - NADPH:cytochrome c reductase - NADPH:ferrihemoprotein oxidoreductase - NADPH:hemoprotein oxidoreductase - POR - TPNH-cytochrome c reductase - TPNH2 cytochrome c reductase - aldehyde reductase - cytochrome P-450 reductase - cytochrome P450 reductase - cytochrome c reductase - dihydroxynicotinamide adenine dinucleotide phosphate-cytochrome c reductase - ferrihemoprotein P-450 reductase - reduced nicotinamide adenine dinucleotide phosphate-cytochrome c reductase - reductase cytochrome c - - - - - - - - - - - - - 1.6.99.1 - - - - - - GO:0003959 - - - - - - GO:0008468 - - - - - - GO:0016660 - - - - - - NADPH-DEHYDROGENASE-RXN - - - - - - e0523 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NADPH + H+ + quinone acceptor = NADP+ + hydroquinone. - GO:0003959 - NADPH dehydrogenase - NADPH diaphorase - NADPH-dehydrogenase - NADPH2 diaphorase - NADPH2-dehydrogenase - NADPH:acceptor oxidoreductase - OYE - TPNH dehydrogenase - TPNH-diaphorase - dihydronicotinamide adenine dinucleotide phosphate dehydrogenase - old yellow enzyme - oxidoreductase - reduced nicotinamide adenine dinucleotide phosphate dehydrogenase - triphosphopyridine diaphorase - triphosphopyridine nucleotide diaphorase - - - - - - - - - - - - - 2.5.1.49 - - - - - - GO:0003961 - - - - - - O-ACETYLHOMOSERINE-THIOL-LYASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O-acetyl-L-homoserine + methanethiol = L-methionine + acetate. - 4.2.99.9 - GO:0003961 - O-acetyl-L-homoserine acetate-lyase - O-acetyl-L-homoserine sulfhydrolase - O-acetyl-L-homoserine:methanethiol 3-amino-3-carboxypropyltransferase - O-acetylhomoserine - O-acetylhomoserine aminocarboxypropyltransferase - O-acetylhomoserine sulfhydrolase - OAH sulfhydrylase - - - - - - - - - - - - - 2.5.1.48 - - - - - - GO:0000505 - - - - - - GO:0003962 - - - - - - O-SUCCHOMOSERLYASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O-succinyl-L-homoserine + L-cysteine = cystathionine + succinate. - CTT gamma synthase - GO:0003962 - O-succinyl-L-homoserine - O-succinyl-L-homoserine succinate-lyase - O-succinylhomoserine - O-succinylhomoserine synthase - O-succinylhomoserine synthetase - O4-succinyl-L-homoserine:L-cysteine - cystathionine g-synthase - cystathionine gamma synthase - cystathionine gamma-synthase - cystathionine synthase - cystathionine synthetase - homoserine O-transsuccinylase - homoserine transsuccinylase - - - - - - - - - - - - 2.7.7.23 - - - - - - GO:0003977 - - - - - - NAG1P-URIDYLTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UTP + N-acetyl-alpha-D-glucosamine 1-phosphate = diphosphate + UDP-N-acetyl-D-glucosamine. - GO:0003977 - GlmU uridylyltransferase - N-acetylglucosamine-1-phosphate uridyltransferase - UDP-GlcNAc pyrophosphorylase - UDP-N-acetylglucosamine diphosphorylase - UDP-N-acetylglucosamine pyrophosphorylase - UDP-acetylglucosamine pyrophosphorylase - UTP:2-acetamido-2-deoxy-alpha-D-glucose-1-phosphate uridylyltransferase - UTP:N-acetyl-alpha-D-glucosamine-1-phosphate uridylyltransferase - acetylglucosamine 1-phosphate uridylyltransferase - uridine diphosphate-N-acetylglucosamine pyrophosphorylase - uridine diphosphoacetylglucosamine phosphorylase - uridine diphosphoacetylglucosamine pyrophosphorylase - - - - - - - - - - - - - 12673 "UDP-glucose 4-epimerase activity" - - - - - - 5.1.3.2 - - - - - - GO:0003978 - - - - - - UDPGLUCEPIM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-glucose = UDP-galactose. - 4-epimerase - GO:0003978 - UDP-D-galactose 4-epimerase - UDP-galactose 4-epimerase - UDP-glucose 4-epimerase - UDP-glucose epimerase - UDPG-4-epimerase - UDPgalactose 4-epimerase - UDPglucose 4-epimerase - galactowaldenase - uridine diphosphate galactose 4-epimerase - uridine diphosphate glucose 4-epimerase - uridine diphospho-galactose-4-epimerase - uridine diphosphoglucose 4-epimerase - uridine diphosphoglucose epimerase - - - - - - - - - - - - - 1.1.1.22 - - - - - - 12674 "UDP-glucose 6-dehydrogenase activity" - - - - - - GO:0003979 - - - - - - UGD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-glucose + 2 NAD+ + H2O = UDP-glucuronate + 2 NADH + H+. - GO:0003979 - UDP-glucose 6-dehydrogenase - - - - - - - - - - - - 12708 "UTP:glucose-1-phosphate uridylyltransferase activity" - - - - - - 2.7.7.9 - - - - - - GLUC1PURIDYLTRANS-RXN - - - - - - GO:0003983 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UTP + alpha-D-glucose 1-phosphate = diphosphate + UDP-glucose. - GO:0003983 - UDP glucose pyrophosphorylase - UDP-glucose diphosphorylase - UDP-glucose pyrophosphorylase - UDPG phosphorylase - UDPG pyrophosphorylase - UTP-glucose-1-phosphate uridylyltransferase - UTP:alpha-D-glucose-1-phosphate uridylyltransferase - UTP:glucose-1-phosphate uridylyltransferase - glucose-1-phosphate uridylyltransferase - uridine 5'-diphosphoglucose pyrophosphorylase - uridine diphosphate-D-glucose pyrophosphorylase - uridine diphosphoglucose pyrophosphorylase - uridine-diphosphate glucose pyrophosphorylase - - - - - - - - - - - - 2.2.1.6 - - - - - - ACETOLACTSYN-RXN - - - - - - GO:0003984 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 pyruvate = 2-acetolactate + CO2.; - GO:0003984 - acetohydroxy acid synthetase - acetohydroxyacid synthase - acetolactate pyruvate-lyase - acetolactate synthase - acetolactic synthetase - alpha-acetohydroxy acid synthetase - alpha-acetohydroxyacid synthase - alpha-acetolactate synthase - alpha-acetolactate synthetase - pyruvate:pyruvate acetaldehydetransferase - - - - - - - - - - - - 2.3.1.9 - - - - - - ACETYL-COA-ACETYLTRANSFER-RXN - - - - - - GO:0003985 - - - - - - e0144 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA. - 2-methylacetoacetyl-CoA thiolase - 3-oxothiolase - GO:0003985 - acetoacetyl-CoA thiolase - acetyl coenzyme A thiolase - acetyl-CoA C-acetyltransferase - acetyl-CoA acetyltransferase - acetyl-CoA:N-acetyltransferase - acetyl-CoA:acetyl-CoA C-acetyltransferase - beta-acetoacetyl coenzyme A thiolase - thiolase II - - - - - - - - - - - - 12714 "acetate-CoA ligase activity" - - - - - - 6.2.1.1 - - - - - - ACETATE--COA-LIGASE-RXN - - - - - - GO:0003987 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA. - ACS - GO:0003987 - acetate thiokinase - acetate to acetyl-CoA - acetate-CoA ligase - acetate:CoA ligase - acetic thiokinase - acetyl CoA ligase - acetyl CoA synthase - acetyl activating enzyme - acetyl coenzyme A synthetase - acetyl-CoA synthase - acetyl-CoA synthetase - acetyl-activating enzyme - acetyl-coenzyme A synthase - acyl-activating enzyme - short chain fatty acyl-CoA synthetase - short-chain acyl-coenzyme A synthetase - - - - - - - - - - - - 12715 "acetyl-CoA C-acyltransferase activity" - - - - - - 2.3.1.16 - - - - - - GO:0003988 - - - - - - KETOACYLCOATHIOL-RXN - - - - - - e0653 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA. - 2-keto-acyl thiolase - 2-methylacetoacetyl-CoA thiolase - 3-ketoacyl CoA thiolase - 3-ketoacyl coenzyme A thiolase - 3-ketoacyl thiolase - 3-ketoacyl-CoA thiolase - 3-ketothiolase - 3-oxoacyl-CoA thiolase - 3-oxoacyl-coenzyme A thiolase - 6-oxoacyl-CoA thiolase - GO:0003988 - KAT - acetoacetyl-CoA beta-ketothiolase - acetyl-CoA C-acyltransferase - acetyl-CoA acyltransferase - acyl-CoA:acetyl-CoA C-acyltransferase - beta-ketoacyl coenzyme A thiolase - beta-ketoacyl-CoA thiolase - beta-ketoadipyl coenzyme A thiolase - beta-ketoadipyl-CoA thiolase - beta-ketothiolase - ketoacyl-CoA acyltransferase - ketoacyl-coenzyme A thiolase - long-chain 3-oxoacyl-CoA thiolase - oxoacyl-coenzyme A thiolase - pro-3-ketoacyl-CoA thiolase - thiolase I - - - - - - - - - - - - 12716 "acetyl-CoA carboxylase activity" - - - - - - 6.4.1.2 - - - - - - ACETYL-COA-CARBOXYLTRANSFER-RXN - - - - - - GO:0003989 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. - GO:0003989 - acetyl coenzyme A carboxylase - acetyl-CoA carboxylase - acetyl-CoA:carbon-dioxide ligase - - - - - - - - - - - - - - 2.7.2.8 - - - - - - ACETYLGLUTKIN-RXN - - - - - - GO:0003991 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate 5-phosphate. - ATP:N-acetyl-L-glutamate 5-phosphotransferase - GO:0003991 - N-acetylglutamate 5-phosphotransferase - N-acetylglutamate kinase - N-acetylglutamate phosphokinase - N-acetylglutamic 5-phosphotransferase - acetylglutamate kinase - acetylglutamate phosphokinase - - - - - - - - - - - - - 2.6.1.11 - - - - - - ACETYLORNTRANSAM-RXN - - - - - - GO:0003992 - - - - - - GO:0047318 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N2-acetyl-L-ornithine + 2-oxoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate. - 2-N-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase - 5-transaminase - ACOAT - GO:0003992 - N-acetylornithine aminotransferase - N-acetylornithine-delta-transaminase - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase - N2-acetyl-L-ornithine:2-oxoglutarate aminotransferase - N2-acetylornithine 5-aminotransferase - N2-acetylornithine 5-transaminase - acetylornithine 5-aminotransferase - acetylornithine aminotransferase - acetylornithine delta-transaminase - acetylornithine transaminase - succinylornithine aminotransferase - - - - - - - - - - - - - 12740 "aconitate hydratase activity" - - - - - - 4.2.1.3 - - - - - - ACONITATEDEHYDR-RXN - - - - - - GO:0003994 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: citrate = cis-aconitate + H2O = isocitrate; i.e. the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate. - GO:0003994 - aconitase - aconitate hydratase - cis-aconitase - citrate hydro-lyase - hydro-lyase - - - - - - - - - - - - - 1.3.99.- - - - - - - 1.3.99.3 - - - - - - 4266 "acyl-CoA dehydrogenase activity" - - - - - - ACYLCOADEHYDROG-RXN - - - - - - GO:0003995 - - - - - - GO:0019109 - - - - - - LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor. - 2 3-oxidoreductase - GO:0003995 - acyl CoA dehydrogenase - acyl coenzyme A dehydrogenase - acyl dehydrogenase - acyl-CoA dehydrogenase - acyl-CoA reductase - acyl-CoA:acceptor 2 3-oxidoreductase - fatty acyl coenzyme A dehydrogenase - fatty-acyl-CoA dehydrogenase - general acyl CoA dehydrogenase - long-chain acyl coenzyme A dehydrogenase - long-chain acyl-CoA dehydrogenase - medium-chain acyl-CoA dehydrogenase - medium-chain acyl-coenzyme A dehydrogenase - - - - - - - - - - - - - 3.6.1.7 - - - - - - ACYLPHOSPHATASE-RXN - - - - - - GO:0003998 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate. - 1 3-diphosphoglycerate phosphatase - GO:0003998 - GP 1-3 - Ho 1-3 - acetic phosphatase - acetylphosphatase - acylphosphatase - acylphosphate phosphohydrolase - - - - - - - - - - - - - 12749 "adenine phosphoribosyltransferase activity" - - - - - - 2.4.2.7 - - - - - - ADENPRIBOSYLTRAN-RXN - - - - - - GO:0003999 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate.; - AMP diphosphorylase - AMP pyrophosphorylase - AMP-pyrophosphate phosphoribosyltransferase - AMP:diphosphate phospho-D-ribosyltransferase - APRT - GO:0003999 - adenine phosphoribosylpyrophosphate transferase - adenine phosphoribosyltransferase - adenosine phosphoribosyltransferase - adenylate pyrophosphorylase - adenylic pyrophosphorylase - transphosphoribosidase - - - - - - - - - - - - - - - GO:0004003 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of the DNA helix. - ATP-dependent DNA helicase - GO:0004003 - - - - - - - - - - - - - GO:0004004 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix. - ATP-dependent RNA helicase - GO:0004004 - - - - - - - - - - - - 3.6.3.4 - - - - - - 3.6.3.4-RXN - - - - - - GO:0004008 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out). - ATP phosphohydrolase - ATPase - Cu2+-exporting ATPase - GO:0004008 - copper exporting ATPase - copper-exporting ATPase - copper-translocating P-type ATPase - cu2+-exporting ATPase - - - - - - - - - - - - - 4.1.1.50 - - - - - - 7049 "adenosylmethionine decarboxylase activity" - - - - - - GO:0004014 - - - - - - SAMDECARB-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt + CO2. - GO:0004014 - S-adenosyl-L-methionine carboxy-lyase - S-adenosyl-L-methionine decarboxylase - S-adenosylmethionine decarboxylase - adenosyl methionine decarboxylase - adenosylmethionine decarboxylase - - - - - - - - - - - - - 2.6.1.62 - - - - - - DAPASYN-RXN - - - - - - GO:0004015 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + 8-amino-7-oxononanoate = S-adenosyl-4-methylthio-2-oxobutanoate + 7,8-diaminononanoate.; - 7 8-diamino-pelargonic acid aminotransferase - 7 8-diaminonanoate transaminase - 7 8-diaminononanoate aminotransferase - 7 8-diaminononanoate transaminase - 7 8-diaminopelargonic acid aminotransferase - 7-keto-8-aminopelargonic acid - 7-keto-8-aminopelargonic acid aminotransferase - DAPA aminotransferase - DAPA transaminase - GO:0004015 - S-adenosyl-L-methionine:8-amino-7-oxononanoate aminotransferase - adenosyl methionine-8-amino-7-oxononanoate transaminase - adenosylmethionine--8-amino-7-oxononanoate aminotransferase - adenosylmethionine-8-amino-7-oxononanoate aminotransferase - adenosylmethionine-8-amino-7-oxononanoate transaminase - diaminopelargonate synthase - - - - - - - - - - - - 4.6.1.1 - - - - - - 7056 "adenylate cyclase activity" - - - - - - ADENYLATECYC-RXN - - - - - - GO:0004016 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. - 3' 5'-cyclic AMP synthetase - ATP diphosphate-lyase - ATP pyrophosphate-lyase - GO:0004016 - adenyl cyclase - adenylate cyclase - adenylyl cyclase - adenylylcyclase - cAMP generating peptide - - - - - - - - - - - - - - 2.7.4.3 - - - - - - ADENYL-KIN-RXN - - - - - - GO:0004017 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + AMP = 2 ADP. - 5'-AMP-kinase - ATP:AMP phosphotransferase - GO:0004017 - adenylate kinase - adenylic kinase - adenylokinase - myokinase - - - - - - - - - - - - 4.3.2.2 - - - - - - 7065 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" - - - - - - AMPSYN-RXN - - - - - - GO:0004018 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP. - AMP-lyase - GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) - adenylosuccinase - adenylosuccinate lyase - succino AMP-lyase - - - - - - - - - - - - - 6.3.4.4 - - - - - - 7069 "adenylosuccinate synthase activity" - - - - - - ADENYLOSUCCINATE-SYNTHASE-RXN - - - - - - GO:0004019 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: GTP + IMP + L-aspartate = GDP + phosphate + N6-(1,2-dicarboxyethyl)-AMP. - GO:0004019 - IMP--aspartate ligase - IMP:L-aspartate ligase - adenylosuccinate synthase - adenylosuccinate synthetase - succino-AMP synthetase - succinoadenylic kinosynthetase - - - - - - - - - - - - - - 2.7.1.25 - - - - - - 7077 "adenylylsulfate kinase activity" - - - - - - ADENYLYLSULFKIN-RXN - - - - - - GO:0004020 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + adenylylsulfate = ADP + 3'-phosphoadenosine 5'-phosphosulfate. - 5'-phosphoadenosine sulfate kinase - APS kinase - ATP:adenylyl-sulfate 3'-phosphotransferase - GO:0004020 - adenosine 5'-phosphosulfate kinase - adenosine phosphosulfate kinase - adenosine phosphosulfokinase - adenosine-5'-phosphosulfate 3'-phosphotransferase - adenosine-5'-phosphosulfate-3'-phosphokinase - adenosine-5'-phosphosulphate 3'-phosphotransferase - adenylyl-sulfate kinase - adenylyl-sulphate kinase - adenylylsulfate kinase - - - - - - - - - - - - - 1.1.1.1 - - - - - - ALCOHOL-DEHYDROG-GENERIC-RXN - - - - - - GO:0004022 - - - - - - e0023 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.; - ADH - GO:0004022 - NAD-dependent alcohol dehydrogenase - NAD-specific aromatic alcohol dehydrogenase - NADH-alcohol dehydrogenase - NADH-aldehyde dehydrogenase - alcohol dehydrogenase - alcohol dehydrogenase (NAD) - alcohol:NAD+ oxidoreductase - aliphatic alcohol dehydrogenase - ethanol dehydrogenase - primary alcohol dehydrogenase - yeast alcohol dehydrogenase - - - - - - - - - - - - - 1.2.1.3 - - - - - - 7097 "aldehyde dehydrogenase (NAD) activity" - - - - - - ALDHDEHYDROG-RXN - - - - - - Aldehyde_dehydrogenase_(NAD+) - - - - - - GO:0004029 - - - - - - e0024 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+. - CoA-independent aldehyde dehydrogenase - GO:0004029 - NAD-aldehyde dehydrogenase - NAD-dependent 4-hydroxynonenal dehydrogenase - NAD-dependent aldehyde dehydrogenase - NAD-linked aldehyde dehydrogenase - aldehyde dehydrogenase - aldehyde dehydrogenase (NAD) - aldehyde:NAD+ oxidoreductase - m-methylbenzaldehyde dehydrogenase - propionaldehyde dehydrogenase - - - - - - - - - - - - - 1.2.1.5 - - - - - - ALDEHYDE-DEHYDROGENASE-NADP+-RXN - - - - - - GO:0004030 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+.; - ALDH - GO:0004030 - aldehyde dehydrogenase [NAD(P)+] - oxidoreductase - - - - - - - - - - - - - 5.1.3.3 - - - - - - ALDOSE-1-EPIMERASE-RXN - - - - - - GO:0004034 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose. - GO:0004034 - aldose 1-epimerase - aldose mutarotase - mutarotase - - - - - - - - - - - - - 3.1.3.1 - - - - - - ALKAPHOSPHA-RXN - - - - - - GO:0004035 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum. - GO:0004035 - alkaline phenyl phosphatase - alkaline phosphatase - alkaline phosphohydrolase - alkaline phosphomonoesterase - glycerophosphatase - orthophosphoric-monoester phosphohydrolase - phosphate-monoester phosphohydrolase - phosphomonoesterase - - - - - - - - - - - - - 3.5.2.5 - - - - - - ALLANTOINASE-RXN - - - - - - GO:0004038 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: allantoin + H2O = allantoate. - GO:0004038 - allantoinase - amidohydrolase - - - - - - - - - - - - - 3.5.1.4 - - - - - - AMIDASE-RXN - - - - - - GO:0004040 - - - - - - e0068 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.; - GO:0004040 - N-acetylaminohydrolase - acetamidase - acylamidase - acylamide amidohydrolase - acylase - amidase - amidohydrolase - fatty acylamidase - - - - - - - - - - - - - 2.3.1.1 - - - - - - 7143 "amino-acid N-acetyltransferase activity" - - - - - - GO:0004042 - - - - - - N-ACETYLTRANSFER-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + L-glutamate = CoA + N-acetyl-L-glutamate.; - AGAS - GO:0004042 - N-acetylglutamate synthase - acetyl-CoA:L-glutamate N-acetyltransferase - acetylglutamate acetylglutamate synthetase - amino acid acetyltransferase - amino-acid N-acetyltransferase - - - - - - - - - - - - - 2.4.2.14 - - - - - - 7147 "amidophosphoribosyltransferase activity" - - - - - - GO:0004044 - - - - - - PRPPAMIDOTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O. - 5'-phosphoribosylpyrophosphate amidotransferase - 5-phosphoribosyl-1-pyrophosphate amidotransferase - 5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase - 5-phosphororibosyl-1-pyrophosphate amidotransferase - GO:0004044 - alpha-5-phosphoribosyl-1-pyrophosphate amidotransferase - amidophosphoribosyltransferase - glutamine 5-phosphoribosylpyrophosphate amidotransferase - glutamine phosphoribosyldiphosphate amidotransferase - glutamine phosphoribosylpyrophosphate amidotransferase - glutamine ribosylpyrophosphate 5-phosphate amidotransferase - phosphoribose pyrophosphate amidotransferase - phosphoribosyl pyrophosphate amidotransferase - phosphoribosyldiphosphate 5-amidotransferase - phosphoribosylpyrophosphate glutamyl amidotransferase - - - - - - - - - - - - - 3.1.1.29 - - - - - - AMINOCYL-TRNA-HYDROLASE-RXN - - - - - - GO:0004045 - - - - - - GO:0019850 - - - - - - GO:0019851 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA.; - D-tyrosyl-tRNA hydrolase - GO:0004045 - N-substituted aminoacyl transfer RNA hydrolase - aminoacyl-tRNA aminoacylhydrolase - aminoacyl-tRNA hydrolase - aminoacyl-tRNA hydrolase reaction - aminoacyl-transfer ribonucleate hydrolase - peptidyl-tRNA hydrolase - - - - - - - - - - - - - 2.1.2.10 - - - - - - GCVT-RXN - - - - - - GO:0004047 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein. - GO:0004047 - T-protein - aminomethyltransferase - glycine synthase - glycine-cleavage system T-protein - protein-8-S-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase - protein-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase - tetrahydrofolate aminomethyltransferase - - - - - - - - - - - - - 2.4.2.18 - - - - - - GO:0004048 - - - - - - PRTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-(5-phospho-D-ribosyl)-anthranilate + diphosphate = anthranilate + 5-phospho-a-D-ribose 1-diphosphate. - GO:0004048 - PRT - anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase - anthranilate phosphoribosylpyrophosphate phosphoribosyltransferase - anthranilate phosphoribosyltransferase - anthranilate-PP-ribose-P phosphoribosyltransferase - phospho-alpha-D-ribosyltransferase - phosphoribosyl-anthranilate diphosphorylase - phosphoribosyl-anthranilate pyrophosphorylase - phosphoribosylanthranilate pyrophosphorylase - phosphoribosylanthranilate transferase - - - - - - - - - - - - - 4.1.3.27 - - - - - - ANTHRANSYN-RXN - - - - - - GO:0004049 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate. - GO:0004049 - anthranilate synthase - anthranilate synthetase - chorismate pyruvate-lyase - - - - - - - - - - - - - 3.5.3.1 - - - - - - 7167 "arginase activity" - - - - - - ARGINASE-RXN - - - - - - GO:0004053 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea. - GO:0004053 - L-arginase - L-arginine amidinohydrolase - arginase - arginine amidinase - arginine transamidinase - canavanase - - - - - - - - - - - - - 6.3.4.5 - - - - - - 7171 "argininosuccinate synthase activity" - - - - - - ARGSUCCINSYN-RXN - - - - - - GO:0004055 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate. - GO:0004055 - L-citrulline:L-aspartate ligase - arginine succinate synthetase - argininosuccinate synthase - argininosuccinate synthetase - argininosuccinic acid synthetase - arginosuccinate synthetase - citrulline--aspartate ligase - - - - - - - - - - - - 4.3.2.1 - - - - - - 7173 "argininosuccinate lyase activity" - - - - - - ARGSUCCINLYA-RXN - - - - - - GO:0004056 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-(L-arginino)succinate = fumarate + L-arginine. - GO:0004056 - arginine-lyase - arginine-succinate lyase - argininosuccinate lyase - argininosuccinic acid lyase - arginosuccinase - - - - - - - - - - - - - 6.3.5.4 - - - - - - 7213 "asparagine synthase (glutamine-hydrolyzing) activity" - - - - - - ASNSYNB-RXN - - - - - - GO:0004066 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-aspartate + L-glutamine = AMP + diphosphate + L-asparagine + L-glutamate. - AS - AS-B - GO:0004066 - L-aspartate:L-glutamine amido-ligase - asparagine synthase - asparagine synthase (glutamine-hydrolyzing) - asparagine synthetase - asparagine synthetase B - glutamine-dependent asparagine synthetase - - - - - - - - - - - - - 3.5.1.1 - - - - - - ASPARAGHYD-RXN - - - - - - GO:0004067 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3. - GO:0004067 - L-asparaginase - L-asparagine amidohydrolase - alpha-asparaginase - asparaginase - asparaginase II - colaspase - crasnitin - elspar - leunase - - - - - - - - - - - - - 4.1.1.11 - - - - - - ASPDECARBOX-RXN - - - - - - GO:0004068 - - - - - - PWY-5155 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate = beta-alanine + CO2. - GO:0004068 - L-aspartate 1-carboxy-lyase - L-aspartate alpha-decarboxylase - aspartate 1-decarboxylase - aspartate alpha-decarboxylase - aspartic alpha-decarboxylase - - - - - - - - - - - - - 2.6.1.1 - - - - - - 7220 "L-aspartate:2-oxoglutarate aminotransferase activity" - - - - - - ASPAMINOTRANS-RXN - - - - - - GO:0004069 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate. - 2-oxoglutarate-glutamate aminotransferase - AAT - AspT - GO:0004069 - GOT - L-aspartate transaminase - L-aspartate-2-ketoglutarate aminotransferase - L-aspartate-2-oxoglutarate aminotransferase - L-aspartate-2-oxoglutarate-transaminase - L-aspartate-alpha-ketoglutarate transaminase - L-aspartate:2-oxoglutarate aminotransferase - L-aspartic aminotransferase - aspartate alpha-ketoglutarate transaminase - aspartate aminotransferase - aspartate transaminase - aspartate-2-oxoglutarate transaminase - aspartate:2-oxoglutarate aminotransferase - aspartic acid aminotransferase - aspartic aminotransferase - aspartyl aminotransferase - glutamate oxaloacetate transaminase - glutamate-oxalacetate aminotransferase - glutamate-oxalate transaminase - glutamic oxalic transaminase - glutamic--aspartic transaminase - glutamic--oxaloacetic transaminase - glutamic-aspartic aminotransferase - glutamic-oxalacetic transaminase - oxaloacetate transferase - oxaloacetate-aspartate aminotransferase - transaminase A - - - - - - - - - - - - - 2.1.3.2 - - - - - - 7225 "aspartate carbamoyltransferase activity" - - - - - - ASPCARBTRANS-RXN - - - - - - GO:0004070 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: carbamoyl phosphate + L-aspartate = phosphate + N-carbamoyl-L-aspartate. - ATCase - GO:0004070 - L-aspartate transcarbamoylase - L-aspartate transcarbamylase - aspartate carbamoyltransferase - aspartate carbamyltransferase - aspartate transcarbamoylase - aspartate transcarbamylase - aspartic acid transcarbamoylase - aspartic carbamyltransferase - aspartic transcarbamylase - carbamoyl-phosphate:L-aspartate carbamoyltransferase - carbamoylaspartotranskinase - carbamylaspartotranskinase - - - - - - - - - - - - - 2.7.2.4 - - - - - - ASPARTATEKIN-RXN - - - - - - GO:0004072 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-aspartate = ADP + 4-phospho-L-aspartate. - ATP:L-aspartate 4-phosphotransferase - GO:0004072 - aspartate kinase - aspartic kinase - aspartokinase - beta-aspartokinase - - - - - - - - - - - - - 1.2.1.11 - - - - - - ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN - - - - - - GO:0004073 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate-4-semialdehyde + phosphate + NADP+ = L-4-aspartyl phosphate + NADPH + H+. - ASA dehydrogenase - GO:0004073 - L-aspartate-4-semialdehyde:NADP+ oxidoreductase - L-aspartate-beta-semialdehyde dehydrogenase - L-aspartate-beta-semialdehyde:NADP oxidoreductase - aspartate semialdehyde dehydrogenase - aspartate-semialdehyde dehydrogenase - aspartic beta-semialdehyde dehydrogenase - aspartic semialdehyde dehydrogenase - - - - - - - - - - - - - 6.3.4.14 - - - - - - BIOTIN-CARBOXYL-RXN - - - - - - GO:0004075 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein. - GO:0004075 - biotin carboxylase - biotin-carboxyl-carrier-protein:carbon-dioxide ligase - - - - - - - - - - - - - 2.8.1.6 - - - - - - 2.8.1.6-RXN - - - - - - GO:0004076 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: dethiobiotin + sulfur = biotin. - GO:0004076 - biotin synthase - biotin synthetase - dethiobiotin:sulfur sulfurtransferase - - - - - - - - - - - - 6.3.4.15 - - - - - - BIOTINLIG-RXN - - - - - - GO:0004077 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + biotin + apo-(acetyl-CoA:carbon-dioxide ligase (ADP forming)) = AMP + diphosphate + (acetyl-CoA:carbon-dioxide ligase (ADP forming)). - GO:0004077 - HCS - acetyl CoA holocarboxylase synthetase - acetyl coenzyme A holocarboxylase synthetase - acetyl-CoA carboxylase biotin holoenzyme synthetase - biotin holoenzyme synthetase - biotin--[acetyl-CoA carboxylase] synthetase - biotin--protein ligase - biotin-[acetyl-CoA-carboxylase] ligase - biotin-acetyl coenzyme A carboxylase synthetase - biotin-acetyl-CoA carboxylase synthetase - biotin-acetyl-CoA-carboxylase ligase - biotin:apo-acetyl-CoA:carbon-dioxide ligase ligase - biotin:apocarboxylase ligase - - - - - - - - - - - - 3.6.1.17 - - - - - - 3.6.1.17-RXN - - - - - - GO:0004081 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: P(1),P(4)-bis(5'-nucleosyl)tetraphosphate + H2O = NTP + NMP. Acts on bis(5'-guanosyl)-, bis(5'-xanthosyl)-, bis(5'-adenosyl)- and bis(5'-uridyl)-tetraphosphate. - 1-P nucleotidohydrolase - Ap4A hydrolase - Ap4Aase - GO:0004081 - P1 nucleotidohydrolase - activity - bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) - diadenosine 5' 5'''-P1 P4-tetraphosphate asymmetrical hydrolase - diadenosine 5' 5'''-P1 P4-tetraphosphate hydrolase - diadenosine 5' asymmetrical hydrolase - diadenosine P1 P4-tetraphosphatase - diadenosinetetraphosphatase - diguanosinetetraphosphatase - dinucleoside tetraphosphatase - dinucleosidetetraphosphatase - hydrolase - - - - - - - - - - - - - 2.6.1.42 - - - - - - 70697 "branched-chain-amino-acid transaminase activity" - - - - - - BRANCHED-CHAINAMINOTRANSFERLEU-RXN - - - - - - GO:0004084 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid. Includes catalysis of the reaction: L-leucine + 2-oxoglutarate = 4-methyl-2-oxopentanoate + L-glutamate and anaologous reactions involving L-isoleucine and L-valine. - GO:0004084 - L-branched chain amino acid aminotransferase - branched-chain amino acid aminotransferase - branched-chain amino acid-glutamate transaminase - branched-chain aminotransferase - branched-chain-amino-acid transaminase - branched-chain-amino-acid:2-oxoglutarate aminotransferase - glutamate-branched-chain amino acid transaminase - transaminase B - - - - - - - - - - - - - 6.3.-.- - - - - - - GO:0004086 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a reaction that results in the formation of carbamoyl phosphate. - GO:0004086 - carbamoyl phosphate synthase - carbamoyl-phosphate synthase - - - - - - - - - - - - - - 6.3.5.5 - - - - - - 7299 "carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity" - - - - - - CARBPSYN-RXN - - - - - - GO:0004088 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 ATP + L-glutamine + CO2 + H2O = 2 ADP + phosphate + glutamate + carbamoyl phosphate. - CPS - GD-CPSase - GO:0004088 - carbamoyl phosphate synthase - carbamoyl phosphate synthetase - carbamoyl-phosphate synthase - carbamoyl-phosphate synthase (glutamine-hydrolyzing) - carbamoyl-phosphate synthetase - carbamoylphosphate synthetase II - carbamyl phosphate synthetase - carbon-dioxide::L-glutamine amido-ligase - glutamine-dependent carbamoyl-phosphate synthase - glutamine-dependent carbamyl phosphate synthetase - hydrogen-carbonate:L-glutamine amido-ligase - - - - - - - - - - - - - 4.2.1.1 - - - - - - CARBODEHYDRAT-RXN - - - - - - GO:0004089 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: H2CO3 = CO2 + H2O. - GO:0004089 - anhydrase - carbonate anhydrase - carbonate dehydratase - carbonate hydro-lyase - carbonic acid anhydrase - carbonic anhydrase - carbonic anhydrase A - carbonic dehydratase - carboxyanhydrase - - - - - - - - - - - - - 3.1.1.- - - - - - - 3.1.1.1 - - - - - - CARBOXYLESTERASE-RXN - - - - - - GO:0004091 - - - - - - GO:0004302 - - - - - - GO:0004759 - - - - - - GO:0016789 - - - - - - e0631 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion. - Ali-esterase - B-esterase - GO:0004091 - ali-esterase - alpha-carboxylesterase - carboxyesterase - carboxyl ester hydrolase - carboxylate esterase - carboxylesterase - carboxylic acid esterase - carboxylic ester hydrolase - carboxylic esterase - carboxylic-ester hydrolase - cocaine esterase - esterase A - esterase B - nonspecific carboxylesterase - procaine esterase - serine esterase - triacetin esterase - vitamin A esterase - - - - - - - - - - - - - 1.11.1.6 - - - - - - 76029 "catalase activity" - - - - - - CATAL-RXN - - - - - - GO:0004096 - - - - - - GO:0016952 - - - - - - GO:0016953 - - - - - - e0834 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O.; - CAT - GO:0004096 - bacterial catalase-peroxidase - caperase - catalase - catalase reaction - catalase-peroxidase - equilase - haem catalase - heme catalase - hydrogen-peroxide:hydrogen-peroxide oxidoreductase - manganese catalase - optidase - - - - - - - - - - - - - 3.1.1.8 - - - - - - 8144 "cholinesterase activity" - - - - - - CHOLINESTERASE-RXN - - - - - - GO:0004104 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion. - BtChoEase - GO:0004104 - acylcholine acylhydrolase - anticholineesterase - benzoylcholinesterase - butyrylcholine esterase - butyrylcholinesterase - choline esterase - choline esterase II - cholinesterase - non-specific cholinesterase - propionylcholinesterase - pseudocholinesterase - - - - - - - - - - - - - 5.4.99.5 - - - - - - CHORISMATEMUT-RXN - - - - - - GO:0004106 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: chorismate = prephenate. - GO:0004106 - chorismate mutase - chorismate pyruvatemutase - hydroxyphenylpyruvate synthase - - - - - - - - - - - - - 4.2.3.5 - - - - - - CHORISMATE-SYNTHASE-RXN - - - - - - GO:0004107 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate. - 5-enolpyruvylshikimate-3-phosphate phospholyase - GO:0004107 - chorismate synthase - phosphate-lyase - - - - - - - - - - - - - 2.3.3.1 - - - - - - 8157 "citrate (Si)-synthase activity" - - - - - - CITSYN-RXN - - - - - - GO:0004108 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group. - GO:0004108 - acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing forming] - citrate (Si)-synthase - citrate condensing enzyme - citrate oxaloacetate-lyase - citrate oxaloacetate-lyase CoA-acetylating - citrate synthase - citrate synthetase - citric synthase - citric-condensing enzyme - citrogenase - condensing enzyme - oxalacetic transacetase - oxaloacetate transacetase - synthase - - - - - - - - - - - - 1.3.3.3 - - - - - - 8160 "coproporphyrinogen oxidase activity" - - - - - - GO:0004109 - - - - - - RXN0-1461 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O. - GO:0004109 - coprogen oxidase - coproporphyrinogen oxidase - coproporphyrinogen-III oxidase - coproporphyrinogen:oxygen oxidoreductase - coproporphyrinogenase - - - - - - - - - - - - 4.4.1.8 - - - - - - CYSTATHIONINE-BETA-LYASE-RXN - - - - - - GO:0004121 - - - - - - GO:0008799 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: cystathionine + H2O = L-homocysteine + NH3 + pyruvate. - GO:0004121 - L-cystathionine L-homocysteine-lyase - beta C-S lyase - beta-cystathionase - cystathionine L-homocysteine-lyase - cystathionine beta-lyase - cystine lyase - - - - - - - - - - - - 4.4.1.1 - - - - - - CYSTAGLY-RXN - - - - - - GO:0004123 - - - - - - GO:0016225 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-cystathionine + H2O = L-cysteine + NH3 + 2-oxobutanoate. - GO:0004123 - L-cystathionine cysteine-lyase - cystalysin - cystathionase - cystathioninase - cystathionine gamma-lyase - cysteine desulfhydrase - cystine desulfhydrase - gamma-CTL - gamma-cystathionase - homoserine deaminase - homoserine deaminase-cystathionase - homoserine dehydratase - - - - - - - - - - - - - 2.5.1.47 - - - - - - ACSERLY-RXN - - - - - - GO:0004124 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O3-acetyl-L-serine + H2S = L-cysteine + acetate.; - 3-O-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase - GO:0004124 - O-acetyl-L-serine sulfhydrylase - O-acetyl-L-serine sulfohydrolase - O-acetylserine - O-acetylserine A - O-acetylserine sulfhydrylase - O3-acetyl-L-serine acetate-lyase - O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase - OAS sulfhydrylase - acetate-lyase - acetylserine sulfhydrylase - cysteine synthase - cysteine synthetase - - - - - - - - - - - - 3.5.4.5 - - - - - - 8270 "cytidine deaminase activity" - - - - - - CYTIDEAM2-RXN - - - - - - GO:0004126 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: cytidine + H2O = uridine + NH3. - GO:0004126 - cytidine aminohydrolase - cytidine deaminase - cytosine nucleoside deaminase - - - - - - - - - - - - - 2.7.4.14 - - - - - - CMPKI-RXN - - - - - - GO:0004127 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP. - ATP:CMP phosphotransferase - ATP:UMP-CMP phosphotransferase - CMP kinase - CTP:CMP phosphotransferase - GO:0004127 - UMP-CMP kinase - cytidine monophosphate kinase - cytidylate kinase - dCMP kinase - deoxycytidine monophosphokinase - deoxycytidylate kinase - pyrimidine nucleoside monophosphate kinase - - - - - - - - - - - - - 1.9.3.1 - - - - - - 8283 "cytochrome-c oxidase activity" - - - - - - CYTOCHROME-C-OXIDASE-RXN - - - - - - GO:0004129 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O. - GO:0004129 - NADH cytochrome c oxidase - aa3-type cytochrome c oxidase - ba3-type cytochrome c oxidase - caa3-type cytochrome c oxidase - cbb3-type cytochrome c oxidase - complex IV - cytochrome a3 - cytochrome aa3 - cytochrome oxidase - cytochrome-c oxidase - ferrocytochrome c oxidase - ferrocytochrome-c:oxygen oxidoreductase - indophenol oxidase - indophenolase - warburg's respiratory enzyme - - - - - - - - - - - - 2.7.1.76 - - - - - - DEOXYADENOSINE-KINASE-RXN - - - - - - GO:0004136 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + deoxyadenosine = ADP + dAMP. - ATP:deoxyadenosine 5'-phosphotransferase - GO:0004136 - deoxyadenosine kinase - purine-deoxyribonucleoside kinase - - - - - - - - - - - - 2.7.1.74 - - - - - - DEOXYCYTIDINE-KINASE-RXN - - - - - - GO:0004137 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NTP + deoxycytidine = NDP + CMP. - 2'-deoxycytidine kinase - Ara-C kinase - GO:0004137 - NTP:deoxycytidine 5'-phosphotransferase - arabinofuranosylcytosine kinase - deoxycytidine kinase - deoxycytidine-cytidine kinase - - - - - - - - - - - - 2.7.1.113 - - - - - - DEOXYGUANOSINE-KINASE-RXN - - - - - - GO:0004138 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + deoxyguanosine = ADP + dGMP. - 2'-deoxyguanosine kinase - ATP:deoxyguanosine 5'-phosphotransferase - GO:0004138 - NTP-deoxyguanosine 5'-phosphotransferase - deoxyguanosine kinase - kinase - - - - - - - - - - - - - 4.1.2.4 - - - - - - DEOXYRIBOSE-P-ALD-RXN - - - - - - GO:0004139 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. - 2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase - 2-deoxyribose-5-phosphate aldolase - GO:0004139 - deoxyriboaldolase - deoxyribose-5-phosphate aldolase - deoxyribose-phosphate aldolase - phosphodeoxyriboaldolase - - - - - - - - - - - - - - 2.7.1.24 - - - - - - 8372 "dephospho-CoA kinase activity" - - - - - - DEPHOSPHOCOAKIN-RXN - - - - - - GO:0004140 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + dephospho-CoA = ADP + CoA. - 3'-dephospho-CoA kinase - ATP:dephospho-CoA 3'-phosphotransferase - GO:0004140 - dephospho-CoA kinase - dephosphocoenzyme A kinase - - - - - - - - - - - - 6.3.3.3 - - - - - - DETHIOBIOTIN-SYN-RXN - - - - - - GO:0004141 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 7,8-diaminononanoate + CO2 = ADP + phosphate + dethiobiotin. - 7 8-diaminononanoate:carbon-dioxide cyclo-ligase - DTB synthetase - GO:0004141 - desthiobiotin synthase - dethiobiotin synthase - - - - - - - - - - - - - - 2.7.1.107 - - - - - - DIACYLGLYKIN-RXN - - - - - - GO:0004143 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate. - 1 2-diacylglycerol kinase - ATP:1 2-diacylglycerol 3-phosphotransferase - ATP:diacylglycerol phosphotransferase - CTP:diacylglycerol kinase - DG kinase - DGK - GO:0004143 - arachidonoyl-specific diacylglycerol kinase - diacylglycerol kinase - diacylglycerol:ATP kinase - diglyceride kinase - sn-1 2-diacylglycerol kinase - - - - - - - - - - - - - 2.3.1.57 - - - - - - 8388 "diamine N-acetyltransferase activity" - - - - - - DIAMACTRANS-RXN - - - - - - GO:0004145 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + an alkane-alpha,omega-diamine = CoA + an N-acetyldiamine. - GO:0004145 - acetyl-CoA:alkane-alpha omega-diamine N-acetyltransferase - acetyl-coenzyme A-1 4-diaminobutane N-acetyltransferase - diamine N-acetyltransferase - diamine acetyltransferase - putrescine N-acetyltransferase - putrescine acetylase - putrescine acetyltransferase - putrescine enzyme - spermidine - spermidine N1-acetyltransferase - spermidine acetyltransferase - spermidine spermine N1-acetyltransferase - spermine - spermine N-acetyltransferase - spermine acetyltransferase - - - - - - - - - - - - 1.5.1.3 - - - - - - DIHYDROFOLATEREDUCT-RXN - - - - - - GO:0004146 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+. - 5 6 7 8-tetrahydrofolate:NADP+ oxidoreductase - 7 8-dihydrofolate reductase - DHFR - GO:0004146 - NADPH-dihydrofolate reductase - dihydrofolate reductase - dihydrofolate reductase:thymidylate synthase - dihydrofolate reduction - dihydrofolic acid reductase - dihydrofolic reductase - folic acid reductase - folic reductase - pteridine reductase:dihydrofolate reductase - tetrahydrofolate dehydrogenase - thymidylate synthetase-dihydrofolate reductase - - - - - - - - - - - - 1.8.1.4 - - - - - - 8399 "dihydrolipoyl dehydrogenase activity" - - - - - - DIHYDLIPOXN-RXN - - - - - - GO:0004148 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+. - E3 component of alpha-ketoacid dehydrogenase complexes - GO:0004148 - L-protein - LDP-Glc - LDP-Val - dehydrolipoate dehydrogenase - diaphorase - dihydrolipoamide dehydrogenase - dihydrolipoamide reduction - dihydrolipoamide:NAD+ oxidoreductase - dihydrolipoic dehydrogenase - dihydrolipoyl dehydrogenase - dihydrolipoylprotein reduction - dihydrothioctic dehydrogenase - glycine-cleavage system L-protein - lipoamide dehydrogenase - lipoamide oxidoreductase - lipoamide reductase - lipoate dehydrogenase - lipoic acid dehydrogenase - lipoyl dehydrogenase - oxidoreductase - - - - - - - - - - - - 2.3.1.61 - - - - - - 8404 "dihydrolipoyllysine-residue succinyltransferase activity" - - - - - - GO:0004149 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: succinyl-CoA + dihydrolipoamide = CoA + S-succinyldihydrolipoamide. - GO:0004149 - S-succinyltransferase - dihydrolipoamide S-succinyltransferase - dihydrolipoamide succinyltransferase - dihydrolipoic transsuccinylase - dihydrolipolyl transsuccinylase - dihydrolipoyl transsuccinylase - dihydrolipoyllysine-residue succinyltransferase - enzyme-dihydrolipoyllysine:succinyl-CoA S-succinyltransferase - lipoate succinyltransferase - lipoic transsuccinylase - lipoyl transsuccinylase - succinyl-CoA:dihydrolipoamide S-succinyltransferase - succinyl-CoA:dihydrolipoate S-succinyltransferase - - - - - - - - - - - - - 4.1.2.25 - - - - - - GO:0004150 - - - - - - H2NEOPTERINALDOL-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine = 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + glycolaldehyde. - 8-dihydropteridine glycolaldehyde-lyase - GO:0004150 - dihydroneopterin aldolase - - - - - - - - - - - - - 3.5.2.3 - - - - - - 8410 "dihydroorotase activity" - - - - - - DIHYDROOROT-RXN - - - - - - GO:0004151 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-dihydroorotate + H2O = N-carbamoyl-L-aspartate. - DHOase - GO:0004151 - amidohydrolase - carbamoylaspartic dehydrase - dihydroorotase - dihydroorotate hydrolase - - - - - - - - - - - - - 1.3.99.11 - - - - - - 8412 "dihydroorotate dehydrogenase activity" - - - - - - DIHYDROOROTATE-DEHYDROGENASE-RXN - - - - - - GO:0004152 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-dihydroorotate + acceptor = orotate + reduced acceptor. - DHOdehase - GO:0004152 - dehydrogenase - dihydoorotic acid dehydrogenase - dihydroorotate dehydrogenase - dihydroorotate:ubiquinone oxidoreductase - oxidoreductase - - - - - - - - - - - - - 2.5.1.15 - - - - - - GO:0004156 - - - - - - H2PTEROATESYNTH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate + 4-aminobenzoate = diphosphate + dihydropteroate. - 2-amino-4-hydroxy-6-hydroxymethyl-7 8-dihydropteridine-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase - 2-amino-4-hydroxydihydropteridine-6-methenyltransferase - 7 8-dihydropteroate synthase - 7 8-dihydropteroate synthetase - 7 8-dihydropteroic acid synthetase - DHPS - GO:0004156 - dihydropteroate diphosphorylase - dihydropteroate pyrophosphorylase - dihydropteroate synthase - dihydropteroate synthetase - dihydropteroic synthetase - - - - - - - - - - - - - 1.3.3.1 - - - - - - DIHYDROOROTOX-RXN - - - - - - GO:0004158 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-dihydroorotate + O2 = orotate + H2O2. - 4 5-L-dihydroorotate:oxygen oxidoreductase - GO:0004158 - dihydroorotate oxidase - oxidoreductase - - - - - - - - - - - - - 4.2.1.9 - - - - - - DIHYDROXYISOVALDEHYDRAT-RXN - - - - - - GO:0004160 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O. - 2 3-dihydroxy-acid hydro-lyase - 2 3-dihydroxyisovalerate dehydratase - DHAD - GO:0004160 - acetohydroxyacid dehydratase - alpha beta-dihydroxyacid dehydratase - alpha beta-dihydroxyisovalerate dehydratase - dihydroxy acid dehydrase - dihydroxy-acid dehydratase - - - - - - - - - - - - 3.6.1.23 - - - - - - 8479 "dUTP diphosphatase activity" - - - - - - DUTP-PYROP-RXN - - - - - - GO:0004170 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate. - GO:0004170 - dUTP diphosphatase - dUTP nucleotidohydrolase - dUTP pyrophosphatase - dUTPase - deoxyuridine-triphosphatase - desoxyuridine 5'-triphosphatase - desoxyuridine 5'-triphosphate nucleotidohydrolase - - - - - - - - - - - - - 1793 "endopeptidase activity" - - - - - - GO:0004175 - - - - - - GO:0016809 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. - GO:0004175 - endopeptidase - endoprotease - proteasome endopeptidase - proteasome endopeptidase regulator - proteinase - - - - - - - - - - - - - GO:0004176 - - - - - - GO:0004280 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the hydrolysis of peptide bonds. - ATP-dependent peptidase - ATP-dependent proteolysis - GO:0004176 - - - - - - - - - - - - 3.4.11.- - - - - - - GO:0004177 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain. - GO:0004177 - aminopeptidase - - - - - - - - - - - - GO:0004180 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide. - GO:0004180 - carboxypeptidase - - - - - - - - - - - - - - 3.4.17.- - - - - - - 8516 "metallocarboxypeptidase activity" - - - - - - GO:0004181 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. - GO:0004181 - metallocarboxypeptidase - - - - - - - - - - - - - 3.4.16.- - - - - - - 8533 "serine-type carboxypeptidase activity" - - - - - - GO:0004185 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).; - GO:0004185 - serine carboxypeptidase - serine-type carboxypeptidase - - - - - - - - - - - - - 1933 "aspartic-type endopeptidase activity" - - - - - - 3.4.23.- - - - - - - GO:0004190 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.; - GO:0004190 - aspartic endopeptidase - aspartic protease - aspartic-type endopeptidase - aspartyl protease - carboxyl protease - - - - - - - - - - - - - - 1791 "metalloendopeptidase activity" - - - - - - 3.4.24.- - - - - - - GO:0004222 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. - GO:0004222 - metalloendopeptidase - metalloendoprotease - metalloendoproteinase - - - - - - - - - - - - - - 1683 "serine-type endopeptidase activity" - - - - - - 3.4.21.- - - - - - - GO:0004252 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). - GO:0004252 - blood coagulation factor - serine-type endopeptidase - - - - - - - - - - - - - 3.4.25.- - - - - - - GO:0004298 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. - 26S protease - GO:0004298 - MCP - alkaline protease - ingensin - large multicatalytic protease - lens neutral proteinase - multicatalytic endopeptidase complex - multicatalytic proteinase - prosome - proteasome endopeptidase complex - threonine endopeptidase - threonine-type endopeptidase - tricorn protease - tricorn proteinase - - - - - - - - - - - - - 10287 "enoyl-CoA hydratase activity" - - - - - - 4.2.1.17 - - - - - - ENOYL-COA-HYDRAT-RXN - - - - - - GO:0004300 - - - - - - GO:0016510 - - - - - - e0014 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O. - 2-enoyl-CoA hydratase - 2-octenoyl coenzyme A hydrase - D-3-hydroxyacyl-CoA dehydratase - ECH - GO:0004300 - acyl coenzyme A hydrase - beta-hydroxyacid dehydrase - beta-hydroxyacyl-CoA dehydrase - crotonyl hydrase - enol-CoA hydratase - enoyl coenzyme A hydrase - enoyl coenzyme A hydratase - enoyl hydrase - enoyl-CoA hydratase - hydratase enoyl coenzyme A - hydro-lyase - short chain enoyl coenzyme A hydratase - short-chain enoyl-CoA hydratase - trans-2-enoyl-CoA hydratase - unsaturated acyl-CoA hydratase - - - - - - - - - - - - 10341 "[acyl-carrier-protein] S-malonyltransferase activity" - - - - - - 2.3.1.39 - - - - - - GO:0004314 - - - - - - MALONYL-COA-ACP-TRANSACYL-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: malonyl-CoA + [acyl-carrier protein] = CoA + malonyl-[acyl-carrier protein]. - ACP S-malonyltransferase - FabD - GO:0004314 - MAT - MCAT - [acyl-carrier protein] S-malonyltransferase - [acyl-carrier-protein] S-malonyltransferase - acyl carrier protein malonyltransferase - acyl carrier proteinmalonyltransferase - acyl-carrier-protein S-malonyltransferase - malonyl coenzyme A-acyl carrier protein transacylase - malonyl transacylase - malonyl transferase - malonyl-CoA-acyl carrier protein transacylase - malonyl-CoA:ACP transacylase - malonyl-CoA:AcpM transacylase - malonyl-CoA:acyl carrier protein transacylase - malonyl-CoA:acyl-carrier-protein S-malonyltransferase - - - - - - - - - - - - 2.3.1.41 - - - - - - 3-OXOACYL-ACP-SYNTH-RXN - - - - - - 76136 "3-oxoacyl-[acyl-carrier-protein] synthase activity" - - - - - - GO:0004315 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = 3-oxoacyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein]. - 3-ketoacyl-acyl carrier protein synthase - 3-oxoacyl-ACP synthase - 3-oxoacyl-[acyl-carrier protein] synthase - 3-oxoacyl-[acyl-carrier-protein] synthase - 3-oxoacyl-acyl-carrier-protein synthase - 3-oxoacyl:ACP synthase I - FabB - FabF1 - GO:0004315 - KAS I - KASI - acyl-acyl-carrier-protein:malonyl-acyl-carrier-protein C-acyltransferase - acyl-malonyl acyl carrier protein-condensing enzyme - beta-ketoacyl acyl carrier protein synthase - beta-ketoacyl synthetase - beta-ketoacyl-ACP synthase I - beta-ketoacyl-ACP synthetase - beta-ketoacyl-[acyl carrier protein] synthase - beta-ketoacyl-acyl carrier protein synthase - beta-ketoacyl-acyl carrier protein synthetase - beta-ketoacyl-acyl-carrier-protein synthase I - beta-ketoacylsynthase - condensing enzyme - enzyme - fatty acid condensing enzyme - ketoacyl-ACP synthase - - - - - - - - - - - - - 1.1.1.100 - - - - - - 3-OXOACYL-ACP-REDUCT-RXN - - - - - - 76148 "3-oxoacyl-[acyl-carrier-protein] reductase activity" - - - - - - GO:0004316 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+. - 3-ketoacyl acyl carrier protein reductase - 3-oxoacyl-ACP reductase - 3-oxoacyl-ACPreductase - 3-oxoacyl-[acyl-carrier protein] reductase - 3-oxoacyl-[acyl-carrier-protein] reductase - 3-oxoacyl-acyl-carrier-protein reductase - GO:0004316 - NADPH-specific 3-oxoacyl-acylcarrier proteinreductase - beta-ketoacyl acyl carrier protein reductase - beta-ketoacyl reductase - beta-ketoacyl thioester reductase - beta-ketoacyl-ACP reductase - beta-ketoacyl-acyl carrier protein reductase - beta-ketoacyl-acyl-carrier reductase - oxidoreductase - - - - - - - - - - - - 1.3.1.9 - - - - - - ENOYL-ACP-REDUCT-NADH-RXN - - - - - - GO:0004318 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+. - GO:0004318 - NADH-enoyl acyl carrier protein reductase - NADH-specific enoyl-ACP reductase - acyl-acyl-carrier-protein:NAD+ oxidoreductase - enoyl-ACP reductase - enoyl-[acyl-carrier protein] reductase - enoyl-[acyl-carrier-protein] reductase (NADH) - enoyl-acyl-carrier-protein reductase - - - - - - - - - - - - 1.3.1.10 - - - - - - 76151 "enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity" - - - - - - ENOYL-ACP-REDUCT-NADPH-RXN - - - - - - GO:0004319 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acyl-[acyl-carrier protein] + NADP+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADPH + H+. - GO:0004319 - NADPH 2-enoyl Co A reductase - acyl-acyl-carrier-protein:NADP+ oxidoreductase - enoyl acyl-carrier-protein reductase - enoyl-ACP reductase - enoyl-[acyl-carrier protein] reductase - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) - enoyl-acyl-carrier-protein reductase - reductase enoyl-acyl carrier protein - - - - - - - - - - - - 1.18.1.2 - - - - - - 1.18.1.2-RXN - - - - - - GO:0004324 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+. - GO:0004324 - NADP:ferredoxin oxidoreductase - NADPH:ferredoxin oxidoreductase - TPNH-ferredoxin reductase - ferredoxin-NADP oxidoreductase - ferredoxin-NADP reductase - ferredoxin-NADP+ reductase - ferredoxin-NADP-oxidoreductase - ferredoxin-TPN reductase - ferredoxin-nicotinamide adenine dinucleotide phosphate reductase - ferredoxin-nicotinamide-adenine dinucleotide phosphate reductase - ferredoxin:NADP+ oxidoreductase - reduced nicotinamide adenine dinucleotide phosphate-adrenodoxin reductase - - - - - - - - - - - - - 10394 "ferrochelatase activity" - - - - - - 4.99.1.1 - - - - - - GO:0004325 - - - - - - PROTOHEMEFERROCHELAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protoporphyrin + Fe2+ = protoheme + 2 H+. - GO:0004325 - ferro-protoporphyrin chelatase - ferrochelatase - heme synthase - heme synthetase - iron chelatase - protoheme ferro-lyase - protoheme ferrolyase - - - - - - - - - - - - - 10396 "tetrahydrofolylpolyglutamate synthase activity" - - - - - - 6.3.2.17 - - - - - - FOLYLPOLYGLUTAMATESYNTH-RXN - - - - - - GO:0004326 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1). - FPGS - GO:0004326 - N10-formyltetrahydropteroyldiglutamate synthetase - folate polyglutamate synthetase - folylpoly-gamma-glutamate synthase - folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase - folylpolyglutamate synthase - folylpolyglutamate synthetase - folylpolyglutamyl synthetase - formyltetrahydropteroyldiglutamate synthetase - synthase - synthetase - tetrahydrofolate synthase - tetrahydrofolate:L-glutamate gamma-ligase - tetrahydrofolyl-[gamma-Glu]n:L-glutamate gamma-ligase - tetrahydrofolylpolyglutamate synthase - tetrahydropteroyl-[gamma-polyglutamate]:L-glutamate gamma-ligase - - - - - - - - - - - - - 10435 "fructose-bisphosphate aldolase activity" - - - - - - 4.1.2.13 - - - - - - F16ALDOLASE-RXN - - - - - - GO:0004332 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate. - 1 6-diphosphofructose aldolase - D-fructose-1 6-bisphosphate D-glyceraldehyde-3-phosphate-lyase - GO:0004332 - SMALDO - aldolase - diphosphofructose aldolase - fructoaldolase - fructose 1 6-diphosphate aldolase - fructose 1-monophosphate aldolase - fructose 1-phosphate aldolase - fructose diphosphate aldolase - fructose-1 6-bisphosphate triosephosphate-lyase - fructose-bisphosphate aldolase - ketose 1-phosphate aldolase - phosphofructoaldolase - zymohexase - - - - - - - - - - - - - 10436 "fumarate hydratase activity" - - - - - - 4.2.1.2 - - - - - - FUMHYDR-RXN - - - - - - GO:0004333 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-malate = fumarate + H2O. - GO:0004333 - L-malate hydro-lyase - fumarase - fumarate hydratase - hydro-lyase - - - - - - - - - - - - - - 10440 "galactokinase activity" - - - - - - 2.7.1.6 - - - - - - GALACTOKIN-RXN - - - - - - GO:0004335 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-galactose = ADP + D-galactose 1-phosphate. - ATP:D-galactose 1-phosphotransferase - ATP:D-galactose-1-phosphotransferase - GO:0004335 - galactokinase - - - - - - - - - - - - - 2.5.1.10 - - - - - - FPPSYN-RXN - - - - - - GO:0004337 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = diphosphate + trans,trans-farnesyl diphosphate. - FPP synthetase - GO:0004337 - farnesyl diphosphate synthetase - farnesyl pyrophosphate synthetase - farnesyl-diphosphate synthase - farnesylpyrophosphate synthetase - geranyl transferase I - geranyl-diphosphate:isopentenyl-diphosphate geranyltranstransferase - geranyltransferase - geranyltranstransferase - - - - - - - - - - - - 10457 "glucokinase activity" - - - - - - 2.7.1.2 - - - - - - GLUCOKIN-RXN - - - - - - GO:0004340 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose 6-phosphate. - ATP:D-glucose 6-phosphotransferase - GO:0004340 - glucokinase - glucose kinase - - - - - - - - - - - - - 3.5.99.6 - - - - - - GLUCOSAMINE-6-P-DEAMIN-RXN - - - - - - GO:0004342 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucosamine 6-phosphate + H2O = D-fructose 6-phosphate + NH3. - 2-amino-2-deoxy-D-glucose-6-phosphate aminohydrolase - GO:0004342 - GlcN6P deaminase - aminodeoxyglucosephosphate isomerase - glucosamine phosphate deaminase - glucosamine-6-phosphate deaminase - glucosamine-6-phosphate isomerase - glucosaminephosphate isomerase - phosphoglucosamine isomerase - phosphoglucosaminisomerase - - - - - - - - - - - - - 1.1.1.49 - - - - - - 10468 "glucose-6-phosphate dehydrogenase activity" - - - - - - GLU6PDEHYDROG-RXN - - - - - - GO:0004345 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucose 6-phosphate + NADP+ = D-glucono-1,5-lactone 6-phosphate + NADPH + H+. - 6-phosphoglucose dehydrogenas - 6-phosphoglucose dehydrogenase - D-glucose 6-phosphate dehydrogenase - D-glucose-6-phosphate:NADP+ 1-oxidoreductase - Entner-doudoroff enzyme - G6PD - G6PDH - GDH - GO:0004345 - NADP-dependent glucose 6-phosphate dehydrogenase - NADP-glucose-6-phosphate dehydrogenase - Zwischenferment - glucose 6-phosphate dehydrogenase - glucose-6-phosphate 1-dehydrogenase - glucose-6-phosphate dehydrogenase - zwischenferment - - - - - - - - - - - - - 10472 "glucose-6-phosphate isomerase activity" - - - - - - 5.3.1.9 - - - - - - GO:0004347 - - - - - - PGLUCISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate. - D-glucose-6-phosphate aldose-ketose-isomerase - D-glucose-6-phosphate ketol-isomerase - GO:0004347 - glucose phosphate isomerase - glucose-6-phosphate isomerase - hexose monophosphate isomerase - hexose phosphate isomerase - hexosephosphate isomerase - oxoisomerase - phosphoglucoisomerase - phosphoglucose isomerase - phosphohexoisomerase - phosphohexomutase - phosphohexose isomerase - phosphosaccharomutase - - - - - - - - - - - - - 3.2.1.45 - - - - - - GLUCOSYLCERAMIDASE-RXN - - - - - - GO:0004348 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine. - D-glucosyl-N-acylsphingosine glucohydrolase - GO:0004348 - GlcCer-beta-glucosidase - acid beta-glucosidase - beta-D-glucocerebrosidase - beta-glucocerebrosidase - beta-glucosylceramidase - ceramide glucosidase - glucocerebrosidase - glucosphingosine glucosylhydrolase - glucosylceramidase - glucosylcerebrosidase - glucosylsphingosine beta-D-glucosidase - glucosylsphingosine beta-glucosidase - psychosine hydrolase - - - - - - - - - - - - - 2.7.2.11 - - - - - - GLUTKIN-RXN - - - - - - GO:0004349 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-glutamate = ADP + L-glutamate 5-phosphate.; - ATP-L-glutamate 5-phosphotransferase - ATP:L-glutamate 5-phosphotransferase - ATP:gamma-L-glutamate phosphotransferase - GO:0004349 - gamma-glutamate kinase - gamma-glutamyl kinase - glutamate 5-kinase - glutamate kinase - - - - - - - - - - - - - 1.2.1.41 - - - - - - GLUTSEMIALDEHYDROG-RXN - - - - - - GO:0001513 - - - - - - GO:0004350 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamate 5-semialdehyde + phosphate + NADP+ = L-gamma-glutamyl 5-phosphate + NADPH + H+. - GO:0004350 - L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase - beta-glutamylphosphate reductase - gamma-glutamyl phosphate reductase - gamma-glutamylphosphate reductase - glutamate semialdehyde dehydrogenase - glutamate-5-semialdehyde dehydrogenase - glutamate-gamma-semialdehyde dehydrogenase - glutamate-phosphate reductase - glutamyl-gamma-semialdehyde dehydrogenase - glutamylphosphate reductase - - - - - - - - - - - - - 1.4.1.2 - - - - - - GLUTAMATE-DEHYDROGENASE-RXN - - - - - - GO:0004352 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+. - GO:0004352 - L-glutamate dehydrogenase - L-glutamate:NAD+ oxidoreductase - NAD-dependent glutamate dehydrogenase - NAD-dependent glutamic dehydrogenase - NAD-glutamate dehydrogenase - NAD-linked glutamate dehydrogenase - NAD-linked glutamic dehydrogenase - NAD-specific glutamate dehydrogenase - NAD-specific glutamic dehydrogenase - NAD:glutamate oxidoreductase - NADH-linked glutamate dehydrogenase - glutamate dehydrogenase - glutamate oxidoreductase - glutamic acid dehydrogenase - glutamic dehydrogenase - - - - - - - - - - - - 1.4.1.13 - - - - - - GLUGLNSYN-PWY - - - - - - GLUTAMATESYN-RXN - - - - - - GLUTSYN-PWY - - - - - - GO:0004355 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 L-glutamate + NADP+ = L-glutamine + 2-oxoglutarate + NADPH + H+. - GO:0004355 - GOGAT - L-glutamate synthase - L-glutamate synthetase - L-glutamate:NADP+ oxidoreductase - L-glutamine:2-oxoglutarate aminotransferase NADPH oxidizing - NADPH-dependent glutamate synthase - NADPH-glutamate synthase - NADPH-linked glutamate synthase - glutamate synthase - glutamate synthase (NADPH) - glutamate synthetase - glutamine amide-2-oxoglutarate aminotransferase - glutamine-ketoglutaric aminotransferase - - - - - - - - - - - - - 10495 "glutamate-ammonia ligase activity" - - - - - - 6.3.1.2 - - - - - - GLUTAMINESYN-RXN - - - - - - GO:0004356 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine. - GO:0004356 - L-glutamate:ammonia ligase - L-glutamine synthetase - glutamate-ammonia ligase - glutamine synthetase - glutamylhydroxamic synthetase - - - - - - - - - - - - - 2.3.1.35 - - - - - - GLUTAMATE-N-ACETYLTRANSFERASE-RXN - - - - - - GO:0004358 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N2-acetyl-L-ornithine + L-glutamate = L-ornithine + N-acetyl-L-glutamate. - 2-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase - GO:0004358 - N-acetyl-L-glutamate synthetase - N-acetylglutamate synthase - N-acetylglutamate synthetase - N2-acetyl-L-ornithine:L-glutamate N-acetyltransferase - acetylglutamate synthetase - acetylglutamate-acetylornithine transacetylase - acetylglutamic synthetase - acetylglutamic-acetylornithine transacetylase - acetylornithinase - acetylornithine glutamate acetyltransferase - alpha-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase - glutamate N-acetyltransferase - glutamate acetyltransferase - ornithine acetyltransferase - ornithine transacetylase - - - - - - - - - - - - - 10219 "glutaminase activity" - - - - - - 3.5.1.2 - - - - - - GLUTAMIN-RXN - - - - - - GO:0004359 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamine + H2O = L-glutamate + NH3. - GO:0004359 - L-glutaminase - L-glutamine amidohydrolase - glutaminase - glutaminase I - glutamine aminohydrolase - - - - - - - - - - - - - 2.6.1.16 - - - - - - GO:0004360 - - - - - - L-GLN-FRUCT-6-P-AMINOTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamine + D-fructose 6-phosphate = L-glutamate + D-glucosamine 6-phosphate. - D-fructose-6-phosphate amidotransferase - GO:0004360 - GlcN6P synthase - L-glutamine-D-fructose-6-phosphate amidotransferase - L-glutamine:D-fructose-6-phosphate isomerase - glucosamine 6-phosphate synthase - glucosamine--fructose-6-phosphate aminotransferase - glucosamine-6-phosphate isomerase - glucosamine-6-phosphate synthase - glucosaminephosphate isomerase - glutamine-fructose-6-phosphate transaminase (isomerizing) - hexosephosphate aminotransferase - - - - - - - - - - - - - 10524 "glutathione synthase activity" - - - - - - 6.3.2.3 - - - - - - GLUTATHIONE-SYN-RXN - - - - - - GO:0004363 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. - GO:0004363 - GSH synthetase - gamma-L-glutamyl-L-cysteine:glycine ligase - glutathione synthase - glutathione synthetase - - - - - - - - - - - - - 1.2.1.12 - - - - - - 10530 "glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity" - - - - - - GAPOXNPHOSPHN-RXN - - - - - - GO:0004365 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+. - 3-phosphoglyceraldehyde dehydrogenase - D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase - GAPDH - GO:0004365 - NAD-dependent glyceraldehyde phosphate dehydrogenase - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase - NADH-glyceraldehyde phosphate dehydrogenase - dehydrogenase glyceraldehyde phosphate - glyceraldehyde phosphate dehydrogenase - glyceraldehyde-3-P-dehydrogenase - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) - phosphoglyceraldehyde dehydrogenase - triosephosphate dehydrogenase - - - - - - - - - - - - - 1.1.1.8 - - - - - - 1.1.1.8-RXN - - - - - - 10533 "glycerol-3-phosphate dehydrogenase (NAD+) activity" - - - - - - GO:0004367 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. - GO:0004367 - L-alpha-glycerol phosphate dehydrogenase - L-alpha-glycerophosphate dehydrogenase - L-glycerol phosphate dehydrogenase - L-glycerophosphate dehydrogenase - NAD-L-glycerol-3-phosphate dehydrogenase - NAD-alpha-glycerophosphate dehydrogenase - NAD-dependent glycerol phosphate dehydrogenase - NAD-dependent glycerol-3-phosphate dehydrogenase - NAD-linked glycerol 3-phosphate dehydrogenase - NADH-dihydroxyacetone phosphate reductase - alpha-glycerol phosphate dehydrogenase - alpha-glycerophosphate dehydrogenase - glycerol 1-phosphate dehydrogenase - glycerol phosphate dehydrogenase - glycerol-3-phosphate dehydrogenase - glycerol-3-phosphate dehydrogenase (NAD+) - glycerophosphate dehydrogenase - hydroglycerophosphate dehydrogenase - - - - - - - - - - - - - 1.1.99.5 - - - - - - 10535 "glycerol-3-phosphate dehydrogenase activity" - - - - - - GLYC3PDEHYDROG-RXN - - - - - - GO:0004368 - - - - - - RXN-9927 - - - - - - RXN0-5258 - - - - - - RXN0-5260 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor. - 2-oxidoreductase - DL-glycerol 3-phosphate oxidase - FAD-dependent glycerol-3-phosphate dehydrogenase - FAD-dependent sn-glycerol-3-phosphate dehydrogenase - FAD-linked L-glycerol-3-phosphate dehydrogenase - FAD-linked glycerol 3-phosphate dehydrogenase - GO:0004368 - L-3-glycerophosphate-ubiquinone oxidoreductase - L-glycerol-3-phosphate dehydrogenase - NAD-independent glycerol phosphate dehydrogenase - alpha-glycerophosphate dehydrogenase - dehydrogenase glycerol phosphate - flavin-linked glycerol-3-phosphate dehydrogenase - flavoprotein-linked L-glycerol 3-phosphate dehydrogenase - glycerol 3-phosphate cytochrome c reductase - glycerol phosphate dehydrogenase - glycerol-3-phosphate dehydrogenase - glycerophosphate dehydrogenase - pyridine nucleotide-independent L-glycerol 3-phosphate dehydrogenase - sn-glycerol 3-phosphate oxidase - sn-glycerol-3-phosphate dehydrogenase - sn-glycerol-3-phosphate:acceptor 2-oxidoreductase - - - - - - - - - - - - - - 10545 "glycerol kinase activity" - - - - - - 2.7.1.30 - - - - - - GLYCEROL-KIN-RXN - - - - - - GO:0004370 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + glycerol = ADP + glycerol 3-phosphate. - ATP:glycerol 3-phosphotransferase - ATP:glycerol-3-phosphotransferase - GK - GO:0004370 - glyceric kinase - glycerokinase - glycerol kinase - - - - - - - - - - - - - - 2.7.1.29 - - - - - - GLYCERONE-KINASE-RXN - - - - - - GO:0004371 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + glycerone = ADP + glycerone phosphate. - ATP:glycerone phosphotransferase - GO:0004371 - acetol kinase - dihydroxyacetone kinase - glycerone kinase - - - - - - - - - - - - - 1060 "glycine hydroxymethyltransferase activity" - - - - - - 2.1.2.1 - - - - - - GLYOHMETRANS-RXN - - - - - - GO:0004372 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. - 5 10-methylenetetrahydrofolate:glycine hydroxymethyltransferase - GO:0004372 - L-serine hydroxymethyltransferase - allothreonine aldolase - glycine hydroxymethyltransferase - serine aldolase - serine hydroxymethylase - serine hydroxymethyltransferase - serine transhydroxymethylase - - - - - - - - - - - - 1.4.4.2 - - - - - - GCVP-RXN - - - - - - GO:0004375 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. - GO:0004375 - P-protein - glycine cleavage system P-protein - glycine decarboxylase - glycine dehydrogenase (decarboxylating) - glycine-cleavage complex - glycine-cleavage complex P-protein - glycine:H-protein-lipoyllysine oxidoreductase - glycine:lipoylprotein oxidoreductase - protein P1 - - - - - - - - - - - - - - 2.7.4.8 - - - - - - GO:0004385 - - - - - - GUANYL-KIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + GMP = ADP + GDP. - 5'-GMP kinase - ATP:GMP phosphotransferase - GMP kinase - GO:0004385 - deoxyguanylate kinase - guanosine monophosphate kinase - guanylate kinase - membrane-associated guanylate kinase - phosphotransferase - - - - - - - - - - - - - 7001 "helicase activity" - - - - - - GO:0004386 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix.; - GO:0004386 - helicase - - - - - - - - - - - - 10604 "histidine ammonia-lyase activity" - - - - - - 4.3.1.3 - - - - - - GO:0004397 - - - - - - HISTIDINE-AMMONIA-LYASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-histidine = urocanate + NH3. - GO:0004397 - L-histidine ammonia-lyase - histidase - histidinase - histidine alpha-deaminase - histidine ammonia-lyase - - - - - - - - - - - - - 1.1.1.23 - - - - - - GO:0004399 - - - - - - HISTALDEHYD-RXN - - - - - - HISTOLDEHYD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-histidinol + NAD+ = L-histidine + NADH + H+. - GO:0004399 - histidinol dehydrogenase - - - - - - - - - - - - - 2.6.1.9 - - - - - - GO:0004400 - - - - - - HISTAMINOTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-histidinol-phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate. - GO:0004400 - IAP transaminase - L-histidinol phosphate aminotransferase - L-histidinol-phosphate:2-oxoglutarate aminotransferase - glutamic-imidazoleacetol phosphate transaminase - histidine:imidazoleacetol phosphate transaminase - histidinol phosphate aminotransferase - histidinol-phosphate aminotransferase - histidinol-phosphate transaminase - imidazole acetol-phosphate transaminase - imidazoleacetol phosphate transaminase - imidazolylacetolphosphate aminotransferase - imidazolylacetolphosphate transaminase - - - - - - - - - - - - - 3.1.3.15 - - - - - - GO:0004401 - - - - - - HISTIDPHOS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-histidinol-phosphate + H2O = L-histidinol + phosphate. - GO:0004401 - HPpase - L-histidinol phosphate phosphatase - L-histidinol-phosphate phosphohydrolase - histidinol phosphate phosphatase - histidinol-phosphatase - histidinolphosphatase - histidinolphosphate phosphatase - - - - - - - - - - - - - 1.1.1.3 - - - - - - GO:0004412 - - - - - - HOMOSERDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+. - GO:0004412 - homoserine dehydrogenase - - - - - - - - - - - - - 2.7.1.39 - - - - - - GO:0004413 - - - - - - HOMOSERKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-homoserine = ADP + O-phospho-L-homoserine. - ATP:L-homoserine O-phosphotransferase - GO:0004413 - HSK - homoserine kinase - - - - - - - - - - - - - - 2.7.1.50 - - - - - - GO:0004417 - - - - - - THIAZOLSYN3-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 4-methyl-5-(2-hydroxyethyl)-thiazole = ADP + 4-methyl-5-(2-phosphoethyl)-thiazole. - 2-phosphotransferase - GO:0004417 - hydroxyethylthiazole kinase - kinase - - - - - - - - - - - - - 11374 "hydroxymethylbilane synthase activity" - - - - - - 2.5.1.61 - - - - - - GO:0004418 - - - - - - OHMETHYLBILANESYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4 porphobilinogen + H2O = hydroxymethylbilane + 4 NH3. - (4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing) - GO:0004418 - HMB-synthase - activity - hydroxymethylbilane synthase - porphobilinogen ammonia-lyase - porphobilinogen deaminase - porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing) - pre-uroporphyrinogen synthase - uroporphyrinogen I synthase - uroporphyrinogen I synthetase - uroporphyrinogen synthase - uroporphyrinogen synthetase - - - - - - - - - - - - - 4.1.3.4 - - - - - - 74178 "hydroxymethylglutaryl-CoA lyase activity" - - - - - - GO:0004419 - - - - - - HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetyl-CoA + acetoacetate. - 3-hydroxy-3-methylglutarate-CoA lyase - 3-hydroxy-3-methylglutaryl CoA cleaving enzyme - 3-hydroxy-3-methylglutaryl coenzyme A lyase - 3-hydroxy-3-methylglutaryl-CoA lyase - GO:0004419 - HMG-CoA lyase - acetoacetate-lyase - hydroxymethylglutaryl coenzyme A lyase - hydroxymethylglutaryl coenzyme A-cleaving enzyme - hydroxymethylglutaryl-CoA lyase - - - - - - - - - - - - - 2.3.3.10 - - - - - - 74169 "hydroxymethylglutaryl-CoA synthase activity" - - - - - - GO:0004421 - - - - - - HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA. - 3-hydroxy-3-methylglutaryl CoA synthetase - 3-hydroxy-3-methylglutaryl coenzyme A synthase - 3-hydroxy-3-methylglutaryl coenzyme A synthetase - 3-hydroxy-3-methylglutaryl-CoA synthase - 3-hydroxy-3-methylglutaryl-coenzyme A synthase - GO:0004421 - HMG-CoA synthase - acetoacetyl coenzyme A transacetase - acetoacetyl-CoA-lyase - acetyl-CoA:acetoacetyl-CoA C-acetyltransferase - beta-hydroxy-beta-methylglutaryl-CoA synthase - hydroxymethylglutaryl coenzyme A synthase - hydroxymethylglutaryl coenzyme A-condensing enzyme - hydroxymethylglutaryl coenzyme alpha-condensing enzyme - hydroxymethylglutaryl-CoA synthase - - - - - - - - - - - - - 11410 "hypoxanthine phosphoribosyltransferase activity" - - - - - - 2.4.2.8 - - - - - - GO:0004422 - - - - - - HYPOXANPRIBOSYLTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate. - 6-hydroxypurine phosphoribosyltransferase - 6-mercaptopurine phosphoribosyltransferase - GMP pyrophosphorylase - GO:0004422 - GPRT - HGPRTase - HPRT - IMP diphosphorylase - IMP pyrophosphorylase - IMP-GMP pyrophosphorylase - IMP:diphosphate phospho-D-ribosyltransferase - Transphosphoribosidase - guanine phosphoribosyltransferase - guanine-hypoxanthine phosphoribosyltransferase - guanosine 5'-phosphate pyrophosphorylase - guanosine phosphoribosyltransferase - guanylate pyrophosphorylase - guanylic pyrophosphorylase - hypoxanthine phosphoribosyltransferase - hypoxanthine-guanine phosphoribosyltransferase - inosinate pyrophosphorylase - inosine 5'-phosphate pyrophosphorylase - inosinic acid pyrophosphorylase - inosinic pyrophosphorylase - purine-6-thiol phosphoribosyltransferase - - - - - - - - - - - - - 4.2.1.19 - - - - - - GO:0004424 - - - - - - IMIDPHOSDEHYD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O. - 3-phosphate hydro-lyase - GO:0004424 - IGP dehydratase - imidazoleglycerol phosphate dehydratase - imidazoleglycerol-phosphate dehydratase - - - - - - - - - - - - - 4.1.1.48 - - - - - - GO:0004425 - - - - - - IGPSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O. - GO:0004425 - carboxy-lyase - carboxy-lyase [cyclizing; - indole-3-glycerol-phosphate synthase - indole-3-glycerophosphate synthase - indoleglycerol phosphate synthase - indoleglycerol phosphate synthetase - - - - - - - - - - - - - 3.6.1.1 - - - - - - GO:0004427 - - - - - - INORGPYROPHOSPHAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: diphosphate + H2O = 2 phosphate. - GO:0004427 - diphosphate phosphohydrolase - inorganic diphosphatase - inorganic pyrophosphatase - pyrophosphate phosphohydrolase - - - - - - - - - - - - - GO:0004437 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the removal of a phosphate group from phosphorylated myo-inositol (1,2,3,5/4,6-cyclohexanehexol) or a phosphatidylinositol. - GO:0004437 - inositol or phosphatidylinositol phosphatase - inositol phosphatidylinositol phosphatase - - - - - - - - - - - - 1.1.1.42 - - - - - - 11499 "isocitrate dehydrogenase (NADP+) activity" - - - - - - GO:0004450 - - - - - - ISOCITDEH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH + H+. - GO:0004450 - NADP isocitric dehydrogenase - NADP-dependent isocitrate dehydrogenase - NADP-dependent isocitric dehydrogenase - NADP-linked isocitrate dehydrogenase - NADP-specific isocitrate dehydrogenase - activity - dual-cofactor-specific isocitrate dehydrogenase - isocitrate dehydrogenase - isocitrate dehydrogenase (NADP+) - isocitrate:NADP+ oxidoreductase - triphosphopyridine nucleotide-linked isocitrate dehydrogenase- - - - - - - - - - - - - 11501 "isopentenyl-diphosphate delta-isomerase activity" - - - - - - 5.3.3.2 - - - - - - GO:0004452 - - - - - - IPPISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the isomerization of isopentenyl diphosphate into dimethylallyl diphosphate.; - GO:0004452 - IPP isomerase - ipp isomerase - isopentenyl-diphosphate D-isomerase - isopentenyl-diphosphate delta-isomerase - isopentenyl-diphosphate delta3-delta2-isomerase - isopentenylpyrophosphate Delta-isomerase - isopentenylpyrophosphate delta-isomerase - isopentenylpyrophosphate isomerase - methylbutenylpyrophosphate isomerase - - - - - - - - - - - - - 1.1.1.86 - - - - - - ACETOLACTREDUCTOISOM-RXN - - - - - - GO:0004455 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R)-2,3-dihydroxy-3-methylbutanoate + NADP+ = (S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH + H+. - 2-hydroxy-3-keto acid reductoisomerase - 3-dihydroxy-3-methylbutanoate:NADP+ oxidoreductase - GO:0004455 - acetohydroxy acid isomeroreductase - acetohydroxy acid reductoisomerase - acetolactate reductoisomerase - alpha-keto-beta-hydroxylacyl reductoisomerase - dihydroxyisovalerate dehydrogenase - isomeroreductase - ketol acid reductoisomerase - ketol-acid reductoisomerase - reductoisomerase - - - - - - - - - - - - - 1.1.1.27 - - - - - - 11515 "L-lactate dehydrogenase activity" - - - - - - GO:0004459 - - - - - - L-LACTATE-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+. - GO:0004459 - L-lactate dehydrogenase - L-lactic acid dehydrogenase - L-lactic dehydrogenase - - - - - - - - - - - - 4.4.1.5 - - - - - - GLYOXI-RXN - - - - - - GO:0004462 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal. - GO:0004462 - aldoketomutase - glyoxalase I - glyoxylase I - ketone-aldehyde mutase - lactoylglutathione lyase - methylglyoxal-lyase - methylglyoxalase - - - - - - - - - - - - 11544 "long-chain-fatty-acid-CoA ligase activity" - - - - - - 6.2.1.3 - - - - - - ACYLCOASYN-RXN - - - - - - GO:0004467 - - - - - - PWY-5143 - - - - - - e0025 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; long-chain fatty acids have chain lengths of C12-18. - ACS3 - FAA1 - GO:0004467 - LCFA synthetase - acyl-CoA synthetase - acyl-activating enzyme - arachidonyl-CoA synthetase - fatty acid thiokinase - lignoceroyl-CoA synthase - long chain fatty acyl-CoA synthetase - long-chain acyl CoA synthetase - long-chain acyl-CoA synthetase - long-chain acyl-CoA synthetase I - long-chain acyl-CoA synthetase II - long-chain acyl-coenzyme A synthetase - long-chain fatty acid activation - long-chain fatty acid-CoA ligase - long-chain fatty acyl coenzyme A synthetase - long-chain-fatty-acid-CoA ligase - long-chain-fatty-acyl-CoA synthetase - oleoyl-CoA synthetase - palmitoyl coenzyme A synthetase - palmitoyl-CoA ligase - palmitoyl-CoA synthase - pristanoyl-CoA synthetase - stearoyl-CoA synthetase - thiokinase - - - - - - - - - - - - 1.1.1.39-RXN - - - - - - GO:0004470 - - - - - - MALIC-NAD-RXN - - - - - - MALIC-NADP-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate. - GO:0004470 - malic enzyme - pyruvic-malic carboxylase - - - - - - - - - - - - - 5.3.1.8 - - - - - - GO:0004476 - - - - - - MANNPISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate. - D-mannose-6-phosphate aldose-ketose-isomerase - D-mannose-6-phosphate ketol-isomerase - GO:0004476 - mannose phosphate isomerase - mannose-6-phosphate isomerase - phosphohexoisomerase - phosphohexomutase - phosphomannoisomerase - phosphomannose isomerase - - - - - - - - - - - - 11565 "methenyltetrahydrofolate cyclohydrolase activity" - - - - - - 3.5.4.9 - - - - - - GO:0004477 - - - - - - METHENYLTHFCYCLOHYDRO-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,10-methenyltetrahydrofolate + H2O = 10-formyltetrahydrofolate. - 5 10-methenyl-THF cyclohydrolase - 5 10-methenyltetrahydrofolate 5-hydrolase - GO:0004477 - citrovorum factor cyclodehydrase - formyl-methenyl-methylenetetrahydrofolate synthetase - methenyltetrahydrofolate cyclohydrolase - - - - - - - - - - - - - 11567 "methionine adenosyltransferase activity" - - - - - - 2.5.1.6 - - - - - - GO:0004478 - - - - - - S-ADENMETSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine. - ATP-methionine adenosyltransferase - ATP:L-methionine S-adenosyltransferase - AdoMet synthetase - GO:0004478 - S-adenosyl-L-methionine synthetase - S-adenosylmethionine synthase - S-adenosylmethionine synthetase - adenosylmethionine synthetase - methionine S-adenosyltransferase - methionine adenosyltransferase - methionine-activating enzyme - - - - - - - - - - - - - 2.1.2.9 - - - - - - GO:0001718 - - - - - - GO:0004479 - - - - - - GO:0070128 - - - - - - METHIONYL-TRNA-FORMYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA + H2O = tetrahydrofolate + N-formylmethionyl-tRNA. - 10-formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase - GO:0004479 - N-terminal peptidyl-methionine N-formylation - N10-formyltetrahydrofolic-methionyl-transfer ribonucleic transformylase - conversion of met-tRNAf to fmet-tRNA - conversion of mitochondrial met-tRNAf to fmet-tRNA - formylmethionyl-transfer ribonucleic synthetase - methionyl ribonucleic formyltransferase - methionyl-tRNA Met formyltransferase - methionyl-tRNA formyltransferase - methionyl-tRNA transformylase - methionyl-transfer RNA transformylase - methionyl-transfer ribonucleate methyltransferase - methionyl-transfer ribonucleic transformylase - mitochondrial N-terminal peptidyl-methionine N-formylation - ribonucleic transformylase - - - - - - - - - - - - 1.5.1.5 - - - - - - GO:0004488 - - - - - - METHYLENETHFDEHYDROG-NADP-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NADP+ = 5,10-methenyltetrahydrofolate + NADPH + H+. - 5 10-methylenetetrahydrofolate:NADP oxidoreductase - 5 10-methylenetetrahydrofolate:NADP+ oxidoreductase - GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) - - - - - - - - - - - - 1.5.1.20 - - - - - - 1.5.1.20-RXN - - - - - - 11594 "methylenetetrahydrofolate reductase (NADPH) activity" - - - - - - GO:0004489 - - - - - - GO:0008702 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-methyltetrahydrofolate + NAD(P)+ = 5,10-methylenetetrahydrofolate + NAD(P)H + H+. - 1.7.99.5 - 5 10-CH2-H4folate reductase - 5 10-methylenetetrahydrofolate reductase - 5 10-methylenetetrahydrofolic acid reductase - 5 10-methylenetetrahydropteroylglutamate reductase - 5 reductase - 5-methyltetrahydrofolate:NAD oxidoreductase - 5-methyltetrahydrofolate:NAD+ oxidoreductase - 5-methyltetrahydrofolate:NADP+ oxidoreductase - GO:0004489 - MTHFR - MetF - N5 10-methylenetetrahydrofolate reductase - N5 N10-methylenetetrahydrofolate reductase - methylenetetrahydrofolate reductase - methylenetetrahydrofolate reductase (NADPH) - methylenetetrahydrofolic acid reductase - oxidoreductase - reductase - - - - - - - - - - - - - 1.2.1.27 - - - - - - 1.2.1.27-RXN - - - - - - 70889 "methylmalonate-semialdehyde dehydrogenase (acylating) activity" - - - - - - GO:0004491 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. - 2-methyl-3-oxopropanoate:NAD+ 3-oxidoreductase - GO:0004491 - MMSA dehydrogenase - MSDH - methylmalonate-semialdehyde dehydrogenase (acylating) - - - - - - - - - - - - - 9021 "monooxygenase activity" - - - - - - GO:0004497 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water. - GO:0004497 - hydroxylase - monooxygenase - - - - - - - - - - - - - 12286 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" - - - - - - 2.4.2.19 - - - - - - GO:0004514 - - - - - - QUINOPRIBOTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate + CO2 = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate. - GO:0004514 - NAD pyrophosphorylase - QAPRTase - nicotinate mononucleotide pyrophosphorylase - nicotinate-nucleotide diphosphorylase (carboxylating) - nicotinate-nucleotide pyrophosphorylase - nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase - quinolinate phosphoribosyltransferase - quinolinic acid phosphoribosyltransferase - quinolinic phosphoribosyltransferase - - - - - - - - - - - - 2.7.7.18 - - - - - - GO:0004515 - - - - - - NICONUCADENYLYLTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + nicotinate ribonucleotide = diphosphate + deamido-NAD+. - ATP:nicotinate-nucleotide adenylyltransferase - ATP:nicotinate-ribonucleotide adenylyltransferase - GO:0004515 - NaMN-ATase - deamido-NAD+ pyrophosphorylase - deamidonicotinamide adenine dinucleotide pyrophosphorylase - diphosphorylase - nicotinate mononucleotide adenylyltransferase - nicotinate-nucleotide adenylyltransferase - nicotinic acid mononucleotide adenylyltransferase - pyrophosphorylase - - - - - - - - - - - - - 12293 "nicotinate phosphoribosyltransferase activity" - - - - - - 2.4.2.11 - - - - - - GO:0004516 - - - - - - NICOTINATEPRIBOSYLTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: nicotinate D-ribonucleotide + diphosphate = nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate. - GO:0004516 - niacin ribonucleotidase - nicotinate phosphoribosyltransferase - nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase - nicotinic acid mononucleotide glycohydrolase - nicotinic acid mononucleotide pyrophosphorylase - nicotinic acid phosphoribosyltransferase - - - - - - - - - - - - 1.14.13.39 - - - - - - 12296 "nitric-oxide synthase activity" - - - - - - GO:0004517 - - - - - - NITRIC-OXIDE-SYNTHASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+. - GO:0004517 - L-arginine NADPH:oxygen oxidoreductase - NADPH-diaphorase - NO synthase - endothelium-derived relaxation factor-forming enzyme - endothelium-derived relaxing factor synthase - nitric oxide synthase - nitric oxide synthetase - nitric-oxide synthase - nitric-oxide synthetase - - - - - - - - - - - - - 3.1.-.- - - - - - - GO:0004518 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within nucleic acids. - GO:0004518 - nuclease - - - - - - - - - - - - - 3138 "endonuclease activity" - - - - - - GO:0004519 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. - GO:0004519 - endonuclease - - - - - - - - - - - - - 12321 "ribonuclease H activity" - - - - - - 3.1.26.4 - - - - - - 3.1.26.4-RXN - - - - - - GO:0004523 - - - - - - GO:0004524 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. - GO:0004523 - RNA*DNA hybrid ribonucleotidohydrolase - RNase H - RNase H1 - RNase H2 - RNase H3 - calf thymus ribonuclease H - endoribonuclease H - endoribonuclease0 H - hybrid nuclease - hybrid ribonuclease - hybridase - ribonuclease H - ribonuclease H1 - ribonuclease H2 - ribonuclease H3 - - - - - - - - - - - - - 12326 "ribonuclease III activity" - - - - - - 3.1.26.3 - - - - - - 3.1.26.3-RXN - - - - - - GO:0004525 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. - GO:0004525 - RNase III - pre-mRNA 3'-end processing endonuclease - ribonuclease 3 - ribonuclease III - - - - - - - - - - - - - - 3.1.26.5 - - - - - - 3.1.26.5-RXN - - - - - - GO:0004526 - - - - - - RNase_P - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor. - GO:0004526 - RNase P - ribonuclease P - tRNA 5' leader endonuclease - - - - - - - - - - - - - GO:0004527 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. - GO:0004527 - exonuclease - - - - - - - - - - - - - GO:0004540 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA. - GO:0004540 - ribonuclease - - - - - - - - - - - - - GO:0004549 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of phosphodiester bonds in tRNA molecules. - GO:0004549 - tRNA-specific RNase - tRNA-specific ribonuclease - - - - - - - - - - - - - - 12403 "nucleoside diphosphate kinase activity" - - - - - - 2.7.4.6 - - - - - - GO:0004550 - - - - - - NUCLEOSIDE-DIP-KIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate. - ATP:nucleoside-diphosphate phosphotransferase - GO:0004550 - NDK - UDP kinase - nucleoside 5'-diphosphate kinase - nucleoside 5'-diphosphate phosphotransferase - nucleoside diphosphate kinase - nucleoside diphosphokinase - nucleoside-diphosphate kinase - nucleotide phosphate kinase - uridine diphosphate kinase - - - - - - - - - - - - - 3.2.1.- - - - - - - GO:0004553 - - - - - - GO:0016800 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any O-glycosyl bond. - GO:0004553 - O-glucosyl hydrolase - hydrolase activity, hydrolyzing O-glycosyl compounds - - - - - - - - - - - - 12418 "alpha-amylase activity" - - - - - - 3.2.1.1 - - - - - - ALPHA-AMYL-RXN - - - - - - GO:0004556 - - - - - - RXN-1823 - - - - - - RXN-1825 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of 1,4-alpha-D-glucosidic linkages in polysaccharides containing three or more 1,4-alpha-linked D-glucose units. - 1 4-alpha-D-glucan glucanohydrolase - GO:0004556 - alpha amylase - alpha-amylase - endoamylase - glycogenase - taka-amylase A - - - - - - - - - - - - 3.2.1.22 - - - - - - ALPHAGALACTOSID-RXN - - - - - - GO:0004557 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase.; - GO:0004557 - alpha-D-galactosidase - alpha-D-galactoside galactohydrolase - alpha-galactosidase - alpha-galactosidase A - alpha-galactoside galactohydrolase - melibiase - - - - - - - - - - - - - 3.2.1.26 - - - - - - 3.2.1.26-RXN - - - - - - GO:0004564 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. - GO:0004564 - acid invertase - alkaline invertase - beta-D-fructofuranoside fructohydrolase - beta-fructofuranosidase - beta-fructosidase - beta-h-fructosidase - fructosylinvertase - glucosucrase - invertase - invertin - maxinvert L 1000 - saccharase - sucrase - - - - - - - - - - - - 3.2.1.23 - - - - - - 3.2.1.23-RXN - - - - - - BGALACT-PWY - - - - - - GO:0004565 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides. - GO:0004565 - S 2107 - activity - beta-D-galactanase - beta-D-galactoside galactohydrolase - beta-D-lactosidase - beta-galactosidase - beta-lactosidase - hydrolact - lactose hydrolysis - lactozym - maxilact - oryzatym - sumiklat - trilactase - - - - - - - - - - - - 3.2.1.25 - - - - - - 3.2.1.25-RXN - - - - - - GO:0004567 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal, non-reducing beta-D-mannose residues in beta-D-mannosides. - GO:0004567 - beta-D-mannosidase - beta-D-mannoside mannohydrolase - beta-mannosidase - beta-mannoside mannohydrolase - exo-beta-D-mannanase - mannanase - mannase - - - - - - - - - - - - - 3.2.1.14 - - - - - - 3.2.1.14-RXN - - - - - - GO:0004568 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the random hydrolysis of N-acetyl-beta-D-glucosaminide 1,4-beta-linkages in chitin and chitodextrins. - 1 4-beta-poly-N-acetylglucosaminidase - GO:0004568 - beta-1 4-poly-N-acetyl glucosamidinase - chitinase - chitodextrinase - poly-beta-glucosaminidase - poly[1 glycanohydrolase - - - - - - - - - - - - - 3.2.1.10 - - - - - - 3.2.1.10-RXN - - - - - - GO:0004574 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of 1,6-alpha-D-glucosidic linkages in some oligosaccharides produced from starch and glycogen by alpha-amylase, and in isomaltose. - GO:0004574 - alpha-limit dextrinase - dextrin 6-glucanohydrolase - dextrin 6alpha-glucanohydrolase - exo-oligo-1 6-glucosidase - isomaltase - limit dextrinase - oligo-1,6-glucosidase - oligosaccharide alpha-1 6-glucohydrolase - oligosaccharide alpha-1 6-glucosidase - sucrase-isomaltase - - - - - - - - - - - - - 12530 "ornithine carbamoyltransferase activity" - - - - - - 2.1.3.3 - - - - - - GO:0004585 - - - - - - ORNCARBAMTRANSFER-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. - GO:0004585 - L-ornithine carbamoyltransferase - L-ornithine carbamyltransferase - L-ornithine transcarbamylase - OTC - OTCase - carbamoyl-phosphate:L-ornithine carbamoyltransferase - carbamylphosphate-ornithine transcarbamylase - citrulline phosphorylase - ornithine carbamoyltransferase - ornithine carbamyltransferase - ornithine transcarbamylase - - - - - - - - - - - - - 12532 "ornithine-oxo-acid transaminase activity" - - - - - - 2.6.1.13 - - - - - - GO:0004587 - - - - - - ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid. - GO:0004587 - GabT - L-ornithine 5-aminotransferase - L-ornithine aminotransferase - L-ornithine:2-oxo-acid aminotransferase - L-ornithine:alpha-ketoglutarate delta-aminotransferase - OAT - ornithine 5-aminotransferase - ornithine aminotransferase - ornithine delta-transaminase - ornithine ketoacid aminotransferase - ornithine transaminase - ornithine--2-oxoacid aminotransferase - ornithine--alpha-ketoglutarate aminotransferase - ornithine--keto acid aminotransferase - ornithine--keto acid transaminase - ornithine--ketoglutarate aminotransferase - ornithine--oxo acid aminotransferase - ornithine--oxo-acid transaminase - ornithine-oxo-acid aminotransferase - ornithine-oxo-acid transaminase - ornithine:alpha-oxoglutarate transaminase - - - - - - - - - - - - - 12534 "orotate phosphoribosyltransferase activity" - - - - - - 2.4.2.10 - - - - - - GO:0004588 - - - - - - OROPRIBTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate. - GO:0004588 - OPRT - OPRTase - orotate phosphoribosyl pyrophosphate transferase - orotate phosphoribosyltransferase - orotic acid phosphoribosyltransferase - orotidine 5'-monophosphate pyrophosphorylase - orotidine monophosphate pyrophosphorylase - orotidine phosphoribosyltransferase - orotidine-5'-phosphate diphosphorylase - orotidine-5'-phosphate pyrophosphorylase - orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase - orotidylate phosphoribosyltransferase - orotidylate pyrophosphorylase - orotidylic acid phosphorylase - orotidylic acid pyrophosphorylase - orotidylic phosphorylase - orotidylic pyrophosphorylase - - - - - - - - - - - - - 12548 "orotidine-5'-phosphate decarboxylase activity" - - - - - - 4.1.1.23 - - - - - - GO:0004590 - - - - - - OROTPDECARB-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: orotidine 5'-phosphate = UMP + CO2. - GO:0004590 - ODCase - OMP decarboxylase - OMP-DC - OMPdcase - UMP synthase - orotate decarboxylase - orotate monophosphate decarboxylase - orotic decarboxylase - orotidine 5'-phosphate decarboxylase - orotidine monophosphate decarboxylase - orotidine phosphate decarboxylase - orotidine-5'-monophosphate decarboxylase - orotidine-5'-phosphate carboxy-lyase - orotidine-5'-phosphate decarboxylase - orotidylic acid decarboxylase - orotidylic decarboxylase - orotodylate decarboxylase - uridine 5'-monophosphate synthase - - - - - - - - - - - - - 1.2.4.2 - - - - - - 2OXOGLUTDECARB-RXN - - - - - - GO:0004591 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2. - 2-ketoglutarate dehydrogenase - 2-oxoglutarate dehydrogenase - 2-oxoglutarate: lipoate oxidoreductase - 2-oxoglutarate:dihydrolipoyllysine-residue succinyltransferase-lipoyllysine 2-oxidoreductase - 2-oxoglutarate:lipoamide 2-oxidoreductase - AKGDH - GO:0004591 - OGDC - alpha-ketoglutarate dehydrogenase - alpha-ketoglutaric acid dehydrogenase - alpha-ketoglutaric dehydrogenase - alpha-oxoglutarate dehydrogenase - ketoglutaric dehydrogenase - oxoglutarate decarboxylase - oxoglutarate dehydrogenase - oxoglutarate dehydrogenase (succinyl-transferring) - - - - - - - - - - - - - 6.3.2.1 - - - - - - GO:0004592 - - - - - - PANTOATE-BETA-ALANINE-LIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + (R)-pantoate + beta-alanine = AMP + diphosphate + (R)-pantothenate. - D-pantoate:beta-alanine ligase - GO:0004592 - ligase - pantoate-activating enzyme - pantoate-beta-alanine ligase - pantoic-activating enzyme - pantothenate synthetase - - - - - - - - - - - - - - 12562 "pantothenate kinase activity" - - - - - - 2.7.1.33 - - - - - - GO:0004594 - - - - - - PANTOTHENATE-KIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + pantothenate = ADP + D-4'-phosphopantothenate. - 4'-phosphotransferase - ATP:pantothenate 4'-phosphotransferase - D-pantothenate kinase - GO:0004594 - pantothenate kinase - pantothenic acid kinase - - - - - - - - - - - - 12566 "pantetheine-phosphate adenylyltransferase activity" - - - - - - 2.7.7.3 - - - - - - GO:0004595 - - - - - - PANTEPADENYLYLTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + pantetheine 4'-phosphate = diphosphate + dephospho-CoA. - 3'-dephospho-CoA pyrophosphorylase - ATP:pantetheine-4'-phosphate adenylyltransferase - ATP:pantetheine-phosphate adenylyltransferase - GO:0004595 - PPAT - dephospho-CoA diphosphorylase - dephospho-CoA pyrophosphorylase - dephospho-coenzyme A pyrophosphorylase - pantetheine phosphate adenylyltransferase - pantetheine-phosphate adenylyltransferase - phosphopantetheine adenylyltransferase - - - - - - - - - - - - - - 1.11.1.- - - - - - - 1.11.1.7 - - - - - - 4411 "peroxidase activity" - - - - - - GO:0004601 - - - - - - GO:0016685 - - - - - - GO:0016686 - - - - - - GO:0016687 - - - - - - GO:0016693 - - - - - - PEROXID-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O.; - GO:0004601 - MPO - bacterial catalase-peroxidase - donor:hydrogen-peroxide oxidoreductase - eosinophil peroxidase - extensin peroxidase - guaiacol peroxidase - heme peroxidase - horseradish peroxidase - japanese radish peroxidase - lactoperoxidase - myeloperoxidase - oxyperoxidase - peroxidase - peroxidase reaction - protoheme peroxidase - pyrocatechol peroxidase - scopoletin peroxidase - secretory plant peroxidase - thiocyanate peroxidase - verdoperoxidase - - - - - - - - - - - - - 1.11.1.9 - - - - - - 13237 "glutathione peroxidase activity" - - - - - - GLUTATHIONE-PEROXIDASE-RXN - - - - - - GO:0004602 - - - - - - GO:0016224 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 glutathione + H2O2 = oxidized glutathione + 2 H2O. - GO:0004602 - GSH peroxidase - glutathione peroxidase - glutathione:hydrogen-peroxide oxidoreductase - non-selenium glutathione peroxidase - reduced glutathione peroxidase - selenium-glutathione peroxidase - - - - - - - - - - - - - 1.8.4.8 - - - - - - 1.8.4.8-RXN - - - - - - GO:0004604 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: adenosine 3',5'-bisphosphate + sulfite + thioredoxin disulfide = 3'-phosphoadenosine 5'-phosphosulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS. - 3'-phosphoadenylylsulfate reductase - GO:0004604 - PAPS reductase - PAPS reductase thioredoxin-dependent - PAPS sulfotransferase - PAdoPS reductase - adenosine 3' 5'-bisphosphate sulfite:oxidized-thioredoxin oxidoreductase - adenosine 3' 5'-bisphosphate sulfite:thioredoxin-disulfide oxidoreductase - phosphoadenosine-phosphosulfate reductase - phosphoadenylyl-sulfate reductase (thioredoxin) - phosphoadenylyl-sulphate reductase - thioredoxin:3'-phospho-adenylylsulfate reductase - thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase - - - - - - - - - - - - 2.7.7.41 - - - - - - CDPDIGLYSYN-RXN - - - - - - GO:0004605 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol. - CDP diglyceride pyrophosphorylase - CDP-DG - CDP-diacylglyceride synthetase - CDP-diacylglycerol synthase - CDP-diglyceride diphosphorylase - CDP-diglyceride pyrophosphorylase - CDP-diglyceride synthase - CDP-diglyceride synthetase - CTP-diacylglycerol synthetase - CTP:1 2-diacylglycerophosphate-cytidyl transferase - CTP:phosphatidate cytidylyltransferase - DAG synthetase - GO:0004605 - cytidine diphosphoglyceride pyrophosphorylase - phosphatidate cytidyltransferase - phosphatidate cytidylyltransferase - phosphatidic acid cytidylyltransferase - - - - - - - - - - - - - 4.1.1.65 - - - - - - GO:0004609 - - - - - - PHOSPHASERDECARB-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphatidyl-L-serine = phosphatidylethanolamine + CO2. - GO:0004609 - PS decarboxylase - phosphatidyl-L-serine carboxy-lyase - phosphatidylserine decarboxylase - - - - - - - - - - - - - 4.1.1.- - - - - - - 4.1.1.32-RXN - - - - - - GO:0004611 - - - - - - PEPCARBOXYKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2. - GO:0004611 - PEP carboxykinase - PEPCK - phosphoenolpyruvate carboxykinase - phosphopyruvate carboxylase - - - - - - - - - - - - - 4.1.1.49 - - - - - - GO:0004612 - - - - - - PEPCARBOXYKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + oxaloacetate = ADP + phosphoenolpyruvate + CO2. - ATP:oxaloacetate carboxy-lyase - GO:0004612 - PEPCK - PEPK - phosphoenolpyruvate carboxykinase (ATP) - phosphoenolpyruvate carboxylase - phosphoenolpyruvic carboxykinase - phosphopyruvate carboxykinase - phosphopyruvate carboxylase - - - - - - - - - - - - - 13266 "phosphoglucomutase activity" - - - - - - 5.4.2.2 - - - - - - GO:0004614 - - - - - - PHOSPHOGLUCMUT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; - GO:0004614 - alpha-D-glucose 1 6-phosphomutase - glucose phosphomutase - phosphoglucomutase - phosphoglucose mutase - - - - - - - - - - - - - 1.1.1.44 - - - - - - 6PGLUCONDEHYDROG-RXN - - - - - - GO:0004616 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+. - 6-phospho-D-gluconate dehydrogenase - 6-phospho-D-gluconate:NADP+ 2-oxidoreductase - 6-phosphogluconate dehydrogenase - 6-phosphogluconic carboxylase - 6-phosphogluconic dehydrogenase - 6PGD - GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) - phosphogluconic acid dehydrogenase - - - - - - - - - - - - - 1.1.1.95 - - - - - - GO:0004617 - - - - - - PGLYCDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+. - 3-phospho-D-glycerate:NAD+ 2-oxidoreductase - 3-phosphoglycerate dehydrogenase - 3-phosphoglycerate:NAD+ 2-oxidoreductase - 3-phosphoglyceric acid dehydrogenase - 3PHP reductase - D- and L-HGA - D-3-phosphoglycerate dehydrogenase - D-3-phosphoglycerate:NAD+ oxidoreductase - GO:0004617 - PGDH - SerA - SerA 3PG dehydrogenase - alpha-KG reductase - alpha-phosphoglycerate dehydrogenase - alphaKG reductase - glycerate 3-phosphate dehydrogenase - glycerate-1 3-phosphate dehydrogenase - phosphoglycerate dehydrogenase - phosphoglycerate oxidoreductase - phosphoglyceric acid dehydrogenase - - - - - - - - - - - - - - 13282 "phosphoglycerate kinase activity" - - - - - - 2.7.2.3 - - - - - - GO:0004618 - - - - - - PHOSGLYPHOS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate. - 3-PGK - 3-phosphoglycerate kinase - 3-phosphoglycerate phosphokinase - 3-phosphoglyceric acid kinase - 3-phosphoglyceric acid phosphokinase - 3-phosphoglyceric kinase - ATP-3-phospho-D-glycerate-1-phosphotransferase - ATP:3-phospho-D-glycerate 1-phosphotransferase - ATP:D-3-phosphoglycerate 1-phosphotransferase - GO:0004618 - PGK - glycerate 3-phosphate kinase - glycerophosphate kinase - phosphoglycerate kinase - phosphoglyceric acid kinase - phosphoglyceric kinase - phosphoglycerokinase - - - - - - - - - - - - - 13285 "phosphoglycerate mutase activity" - - - - - - 3PGAREARR-RXN - - - - - - 5.4.2.1 - - - - - - GO:0004619 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate. - D-phosphoglycerate 2 3-phosphomutase - GO:0004619 - GriP mutase - MPGM - PGA mutase - PGAM - PGM - bisphosphoglyceromutase - diphosphoglycomutase - monophosphoglycerate mutase - monophosphoglyceromutase - phosphoglycerate mutase - phosphoglycerate phosphomutase - phosphoglyceromutase - - - - - - - - - - - - - 3.1.1.5 - - - - - - GO:0004622 - - - - - - GO:0045126 - - - - - - LYSOPHOSPHOLIPASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate. - 2-lysophosphatidylcholine acylhydrolase - GO:0004622 - lecithinase B - lecitholipase - lysolecithinase - lysophopholipase L2 - lysophosphatidase - lysophosphatidylcholine hydrolase - lysophospholipase - lysophospholipase A1 - phosphatidase B - phospholipase B - - - - - - - - - - - - - 13381 "phosphopantothenate--cysteine ligase activity" - - - - - - 6.3.2.5 - - - - - - GO:0004632 - - - - - - P-PANTOCYSLIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CTP + (R)-4'-phosphopantothenate + L-cysteine = CMP + diphosphate + (R)-4'-phosphopantothenoyl-L-cysteine. Cysteine can be replaced by some of its derivatives. - GO:0004632 - ligase - phosphopantothenate--cysteine ligase - phosphopantothenate-cysteine ligase - phosphopantothenoylcysteine synthetase - - - - - - - - - - - - - 13382 "phosphopantothenoylcysteine decarboxylase activity" - - - - - - 4.1.1.36 - - - - - - GO:0004633 - - - - - - P-PANTOCYSDECARB-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-((R)-4-phosphopantothenoyl)-L-cysteine = pantetheine 4'-phosphate + CO2. - 4-phosphopantothenoyl-L-cysteine decarboxylase - 4-phosphopantotheoylcysteine decarboxylase - GO:0004633 - PPC-decarboxylase - carboxy-lyase - phosphopantothenoylcysteine decarboxylase - - - - - - - - - - - - - 13384 "phosphopyruvate hydratase activity" - - - - - - 2PGADEHYDRAT-RXN - - - - - - 4.2.1.11 - - - - - - GO:0004634 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O. - 14-3-2-protein - 2-phospho-D-glycerate hydro-lyase - 2-phospho-D-glycerate-hydrolase - 2-phosphoglycerate dehydratase - 2-phosphoglycerate enolase - 2-phosphoglyceric dehydratase - GO:0004634 - enolase - gamma-enolase - nervous-system specific enolase - phosphoenolpyruvate hydratase - phosphopyruvate hydratase - - - - - - - - - - - - 3.5.4.19 - - - - - - GO:0004635 - - - - - - HISTCYCLOHYD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 1-(5-phosphoribosyl)-AMP + H2O = 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide. - 1 6-hydrolase - GO:0004635 - PRAMP-cyclohydrolase - phosphoribosyl-AMP cyclohydrolase - phosphoribosyladenosine monophosphate cyclohydrolase - - - - - - - - - - - - - 3.6.1.31 - - - - - - GO:0004636 - - - - - - HISTPRATPHYD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + diphosphate. - GO:0004636 - diphosphohydrolase - phosphoribosyl-ATP diphosphatase - phosphoribosyl-ATP pyrophosphatase - phosphoribosyladenosine triphosphate pyrophosphatase - - - - - - - - - - - - - 13392 "phosphoribosylamine-glycine ligase activity" - - - - - - 6.3.4.13 - - - - - - GLYRIBONUCSYN-RXN - - - - - - GO:0004637 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 5-phospho-D-ribosylamine + glycine = ADP + phosphate + N1-(5-phospho-D-ribosyl)glycinamide. - 2-amino-N-ribosylacetamide 5'-phosphate kinosynthase - 5'-phosphoribosylglycinamide synthetase - 5-phospho-D-ribosylamine:glycine ligase - GAR - GAR synthetase - GARS - GO:0004637 - glycinamide ribonucleotide synthetase - glycineamide ribonucleotide synthetase - phosphoribosylamine-glycine ligase - phosphoribosylglycinamide synthetase - phosphoribosylglycineamide synthetase - - - - - - - - - - - - - 13396 "phosphoribosylaminoimidazole carboxylase activity" - - - - - - 4.1.1.21 - - - - - - AIRCARBOXY-RXN - - - - - - GO:0004638 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO2. - 5-amino-1-ribosylimidazole 5-phosphate carboxylase - 5-phosphoribosyl-5-aminoimidazole carboxylase - ADE2 - AIR carboxylase - GO:0004638 - carboxy-lyase - class II PurE - phosphoribosylaminoimidazole carboxylase - - - - - - - - - - - - - 13398 "phosphoribosylaminoimidazolesuccinocarboxamide synthase activity" - - - - - - 6.3.2.6 - - - - - - GO:0004639 - - - - - - SAICARSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate.; - 5-aminoimidazole-4-N-succinocarboxamide ribonucleotide synthetase - GO:0004639 - PurC - SAICAR synthase - SAICAR synthetase - SAICARs - ligase - phosphoribosylaminoimidazole-succinocarboxamide synthase - phosphoribosylaminoimidazole-succinocarboxamide synthetase - phosphoribosylaminoimidazolesuccinocarboxamide synthase - phosphoribosylaminoimidazolesuccinocarboxamide synthetase - ribonucleotide synthetase - synthetase - - - - - - - - - - - - - 5.3.1.24 - - - - - - GO:0004640 - - - - - - PRAISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)-anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate. - GO:0004640 - IGPS:PRAI - PRA isomerase - PRAI - aldose-ketose-isomerase - isomerase - ketol-isomerase - phosphoribosylanthranilate isomerase - - - - - - - - - - - - 13434 "phosphoribosylformylglycinamidine cyclo-ligase activity" - - - - - - 6.3.3.1 - - - - - - AIRS-RXN - - - - - - GO:0004641 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine = ADP + phosphate + 5-amino-1-(5-phospho-D-ribosyl)imidazole. - 5'-aminoimidazole ribonucleotide synthetase - AIR synthase - AIR synthetase - AIRS - GO:0004641 - cyclo-ligase - phosphoribosyl-aminoimidazole synthetase - phosphoribosylaminoimidazole synthetase - phosphoribosylformylglycinamidine cyclo-ligase - - - - - - - - - - - - - 13437 "phosphoribosylformylglycinamidine synthase activity" - - - - - - 6.3.5.3 - - - - - - FGAMSYN-RXN - - - - - - GO:0004642 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 5'-phosphoribosylformylglycinamide + L-glutamine + H2O = ADP + phosphate + 5'-phosphoribosylformylglycinamidine + L-glutamate. - 5'-phosphoribosylformylglycinamide:L-glutamine amido-ligase - FGAM synthase - FGAM synthetase - FGAR amidotransferase - FGARAT - GO:0004642 - amido-ligase - formylglycinamide ribonucloetide amidotransferase - formylglycinamide ribotide amidotransferase - phosphoribosylformylglycinamidine synthase - phosphoribosylformylglycinamidine synthetase - phosphoribosylformylglycineamidine synthetase - - - - - - - - - - - - - 13439 "phosphoribosylaminoimidazolecarboxamide formyltransferase activity" - - - - - - 2.1.2.3 - - - - - - AICARTRANSFORM-RXN - - - - - - GO:0004643 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 10-formyltetrahydrofolate + 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide = tetrahydrofolate + 5'-phosphoribosyl-5-formamido-4-imidazolecarboxamide. - 10-formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazole-carboxamide N-formyltransferase - 10-formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase - 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase - 5-amino-1-ribosyl-4-imidazolecarboxamide 5'-phosphate transformylase - 5-amino-4-imidazolecarboxamide ribonucleotide transformylase - 5-amino-4-imidazolecarboxamide ribotide transformylase - AICAR formyltransferase - AICAR transformylase - GO:0004643 - aminoimidazolecarboxamide ribonucleotide transformylase - phosphoribosylaminoimidazolecarboxamide formyltransferase - - - - - - - - - - - - - 13440 "phosphoribosylglycinamide formyltransferase activity" - - - - - - 2.1.2.2 - - - - - - GART-RXN - - - - - - GO:0004644 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide. - 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide N-formyltransferase - 2-amino-N-ribosylacetamide 5'-phosphate transformylase - 5 10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase - 5'-phosphoribosylglycinamide transformylase - GAR TFase - GAR formyltransferase - GAR transformylase - GART - GO:0004644 - glycinamide ribonucleotide transformylase - phosphoribosylglycinamide formyltransferase - - - - - - - - - - - - - 2.4.1.1 - - - - - - GO:0004645 - - - - - - RXN-1826 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase. - 1 4-alpha-D-glucan:phosphate alpha-D-glucosyltransferase - 1 4-alpha-glucan phosphorylase - GO:0004645 - alpha-glucan phosphorylase - amylopectin phosphorylase - amylophosphorylase - glucan phosphorylase - glucosan phosphorylase - granulose phosphorylase - muscle phosphorylase - muscle phosphorylase a and b - myophosphorylase - phosphorylase - polyphosphorylase - potato phosphorylase - starch phosphorylase - - - - - - - - - - - - - 3.1.3.3 - - - - - - GO:0004647 - - - - - - PSERPHOSPHA-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L(or D)-O-phosphoserine + H2O = L(or D)-serine + phosphate. - GO:0004647 - O-phosphoserine phosphohydrolase - phosphoserine phosphatase - - - - - - - - - - - - - 2.6.1.52 - - - - - - GO:0004646 - - - - - - GO:0004648 - - - - - - PSERTRANSAM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O-phospho-L-serine + 2-oxoglutarate = 3-phosphonooxypyruvate + L-glutamate. - 3-O-phospho-L-serine:2-oxoglutarate aminotransferase - 3-phosphoserine aminotransferase - 3PHP transaminase - GO:0004648 - L-phosphoserine aminotransferase - O-phospho-L-serine:2-oxoglutarate aminotransferase - PSAT - PdxC - SerC - hydroxypyruvic phosphate--glutamic transaminase - phosphohydroxypyruvate transaminase - phosphohydroxypyruvic--glutamic transaminase - phosphoserine aminotransferase - phosphoserine transaminase - - - - - - - - - - - - - 2.7.7.8 - - - - - - 2.7.7.8-RXN - - - - - - GO:0004654 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1). - GO:0004654 - nucleoside diphosphate:polynucleotidyl transferase - polynucleotide phosphorylase - polyribonucleotide nucleotidyltransferase - polyribonucleotide phosphorylase - polyribonucleotide:phosphate nucleotidyltransferase - - - - - - - - - - - - - 13469 "porphobilinogen synthase activity" - - - - - - 4.2.1.24 - - - - - - GO:0004655 - - - - - - PORPHOBILSYNTH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 5-aminolevulinate = porphobilinogen + 2 H2O. - 5-aminolevulinate hydro-lyase - 5-levulinic acid dehydratase - GO:0004655 - aminolevulinate dehydratase - aminolevulinic dehydratase - delta-aminolevulinate dehydratase - delta-aminolevulinic acid dehydrase - delta-aminolevulinic acid dehydratase - delta-aminolevulinic dehydratase - porphobilinogen synthase - - - - - - - - - - - - 1.5.99.8 - - - - - - 13472 "proline dehydrogenase activity" - - - - - - GO:0004657 - - - - - - RXN-7181 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-proline + acceptor = (S)-1-pyrroline-5-carboxylate + reduced acceptor. - GO:0004657 - L-proline dehydrogenase - L-proline:acceptor oxidoreductase - oxidoreductase - proline dehydrogenase - - - - - - - - - - - - 13473 "propionyl-CoA carboxylase activity" - - - - - - 6.4.1.3 - - - - - - GO:0004658 - - - - - - PROPIONYL-COA-CARBOXY-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA. - GO:0004658 - PCCase - propanoyl-CoA:carbon-dioxide ligase - propionyl coenzyme A carboxylase - propionyl-CoA carboxylase - - - - - - - - - - - - - 2.5.1.- - - - - - - GO:0004659 - - - - - - GPPSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor). - GO:0004659 - prenyltransferase - - - - - - - - - - - - - 4.2.1.51 - - - - - - GO:0004664 - - - - - - PREPHENATEDEHYDRAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: prephenate = phenylpyruvate + H2O + CO2. - GO:0004664 - prephenate dehydratase - prephenate hydro-lyase - - - - - - - - - - - - 1.3.1.13 - - - - - - GO:0004665 - - - - - - PREPHENATE-DEHYDROGENASE-NADP+-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: prephenate + NADP+ = 4-hydroxyphenylpyruvate + CO2 + NADPH + H+. - GO:0004665 - prephenate dehydrogenase - prephenate dehydrogenase (NADP+) - prephenate:NADP+ oxidoreductase - - - - - - - - - - - - - - 2.1.1.100 - - - - - - 2.1.1.100-RXN - - - - - - GO:0004671 - - - - - - GO:0018225 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine = S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester. - GO:0004671 - S-adenosyl-L-methionine:protein-C-terminal-S-farnesyl-L-cysteine O-methyltransferase - S-farnesylcysteine methyltransferase - farnesyl cysteine C-terminal methyltransferase - farnesyl-protein carboxymethyltransferase - farnesylated protein C-terminal O-methyltransferase - isoprenylated protein methyltransferase - isoprenylcysteine carboxylmethyltransferase - prenylated protein carboxyl methyltransferase - prenylated protein methyltransferase - prenylcysteine carboxyl methyltransferase - prenylcysteine carboxylmethyltransferase - prenylcysteine carboxymethyltransferase - prenylcysteine methyltransferase - protein C-terminal farnesylcysteine O-methyltransferase - protein S-farnesylcysteine C-terminal methyltransferase - protein-S-isoprenylcysteine O-methyltransferase - - - - - - - - - - - - - - 4030 "protein kinase activity" - - - - - - GO:0004672 - - - - - - GO:0050222 - - - - - - PROTEIN-KINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. - GO:0004672 - protamine kinase - protein kinase - - - - - - - - - - - - - - 2.7.13.3 - - - - - - 2.7.13.3-RXN - - - - - - GO:0004673 - - - - - - GO:0008896 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine. - ATP:protein-L-histidine N-phosphotransferase - EnvZ - GO:0004673 - HK1 - HP165 - Sln1p - histidine kinase - histidine protein kinase - protein histidine kinase - protein kinase - protein-histidine kinase - - - - - - - - - - - - - 2.7.11.- - - - - - - 4028 "protein serine/threonine kinase activity" - - - - - - GO:0004674 - - - - - - GO:0004700 - - - - - - PROTEIN-KINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate. - A-kinase - AP50 kinase - ATP-protein transphosphorylase - ATP:protein phosphotransferase - GO:0004674 - HIPK2 - Hpr kinase - M phase-specific cdc2 kinase - MAPK - PKA - PKC - Prp4 protein kinase - Raf kinase - Raf-1 - STK32 - T-antigen kinase - WEE1Hu - Wee 1-like kinase - Wee-kinase - atypical PKC - atypical protein kinase C - betaIIPKC - calcium phospholipid-dependent protein kinase - casein kinase - cytidine 3' 5'-cyclic monophosphate-responsive protein kinase - dsk1 - epsilon PKC - glycogen synthase A kinase - glycogen synthase a kinase - glycogen synthase kinase - hydroxyalkyl-protein kinase - mitogen-activated S6 kinase - mitogen-activated protein kinase - non-specific serine threonine protein kinase - p82 kinase - phosphorylase B kinase kinase - phosphorylase b kinase kinase - protein glutamyl kinase - protein kinase - protein kinase A - protein kinase p58 - protein phosphokinase - protein serine kinase - protein serine-threonine kinase - protein serine/threonine kinase - protein-aspartyl kinase - protein-cysteine kinase - protein-serine kinase - ribosomal S6 protein kinase - ribosomal protein S6 kinase II - serine kinase - serine protein kinase - serine threonine protein kinase - serine-specific protein kinase - threonine-specific protein kinase - twitchin kinase - - - - - - - - - - - - - 2.7.112.1 - - - - - - GO:0004712 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + a protein serine/threonine/tyrosine = ADP + protein serine/threonine/tyrosine phosphate. - ADK1 - ATP:protein phosphotransferase - Arabidopsis dual specificity kinase 1 - CLK1 - GO:0004712 - Mps1p - dDYRK2 - dual-specificity kinase - dual-specificity protein kinase - protein serine/threonine/tyrosine kinase - protein threonine tyrosine kinase - - - - - - - - - - - - - 11065 "protein tyrosine kinase activity" - - - - - - 2.7.10.- - - - - - - 2.7.10.1-RXN - - - - - - 2.7.10.2-RXN - - - - - - GO:0004713 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate. - GO:0004713 - protein tyrosine kinase - protein-tyrosine kinase - - - - - - - - - - - - - 2.7.10.1-RXN - - - - - - 2.7.10.2 - - - - - - 2.7.10.2-RXN - - - - - - GO:0004715 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate. - ATP:protein-L-tyrosine O-phosphotransferase - ATP:protein-tyrosine O-phosphotransferase - Bruton's tyrosine kinase - GO:0004715 - cytoplasmic protein tyrosine kinase - focal adhesion kinase - janus kinase 1 - janus kinase 2 - janus kinase 3 - non-membrane spanning protein tyrosine kinase - non-specific protein-tyrosine kinase - p60c-src protein tyrosine kinase - - - - - - - - - - - - - 1887 "phosphoprotein phosphatase activity" - - - - - - 3.1.3.16 - - - - - - 3.1.3.16-RXN - - - - - - GO:0004721 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. - GO:0004721 - phosphoprotein phosphatase - phosphoprotein phosphohydrolase - protein phosphatase - protein phosphatase-1 - protein phosphatase-2A - protein phosphatase-2B - protein phosphatase-2C - - - - - - - - - - - - - 11061 "protein tyrosine phosphatase activity" - - - - - - 3.1.3.48 - - - - - - GO:0004725 - - - - - - PROTEIN-TYROSINE-PHOSPHATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. - GO:0004725 - PPT-phosphatase - PTP-phosphatase - PTPase - [phosphotyrosine]protein phosphatase - phosphoprotein phosphatase - phosphotyrosine histone phosphatase - phosphotyrosine phosphatase - phosphotyrosine protein phosphatase - phosphotyrosylprotein phosphatase - protein phosphotyrosine phosphatase - protein tyrosine phosphatase - protein-tyrosine-phosphatase - protein-tyrosine-phosphate phosphohydrolase - tyrosine O-phosphate phosphatase - tyrosylprotein phosphatase - - - - - - - - - - - - 1.3.3.4 - - - - - - 14184 "protoporphyrinogen oxidase activity" - - - - - - GO:0004729 - - - - - - PROTOPORGENOXI-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protoporphyrinogen-IX + O2 = protoporphyrin-IX + H2O2. - GO:0004729 - oxygen-dependent protoporphyrinogen oxidase - protoporphyrinogen-IX:oxygen oxidoreductase - - - - - - - - - - - - - 14201 "purine-nucleoside phosphorylase activity" - - - - - - 2.4.2.1 - - - - - - GO:0004731 - - - - - - PNP-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. - GO:0004731 - PNPase - PUNPI - PUNPII - inosine phosphorylase - inosine-guanosine phosphorylase - purine deoxynucleoside phosphorylase - purine deoxyribonucleoside phosphorylase - purine nucleoside phosphorylase - purine ribonucleoside phosphorylase - purine-nucleoside phosphorylase - purine-nucleoside:phosphate ribosyltransferase - - - - - - - - - - - - 1.5.1.2 - - - - - - 14208 "pyrroline-5-carboxylate reductase activity" - - - - - - GO:0004735 - - - - - - PYRROLINECARBREDUCT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+. - 1-pyrroline-5-carboxylate reductase - 5-oxidoreductase - GO:0004735 - L-proline oxidase - NADPH-L-delta1-pyrroline carboxylic acid reductase - P5CR - pyrroline-5-carboxylate reductase - - - - - - - - - - - - 14209 "pyruvate carboxylase activity" - - - - - - 6.4.1.1 - - - - - - GO:0004736 - - - - - - PYRUVATE-CARBOXYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate. - GO:0004736 - pyruvate carboxylase - pyruvate:carbon-dioxide ligase - pyruvic carboxylase - - - - - - - - - - - - - 1.2.4.1 - - - - - - 14213 "pyruvate dehydrogenase (acetyl-transferring) activity" - - - - - - GO:0004739 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.; - GO:0004739 - MtPDC - PDH - pyruvate dehydrogenase - pyruvate dehydrogenase (acetyl-transferring) - pyruvate dehydrogenase complex - pyruvate:dihydrolipoyllysine-residue acetyltransferase-lipoyllysine 2-oxidoreductase - pyruvate:lipoamide 2-oxidoreductase - - - - - - - - - - - - 14238 "dihydrolipoyllysine-residue acetyltransferase activity" - - - - - - 2.3.1.12 - - - - - - GO:0004742 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide. - GO:0004742 - acetyl-CoA: S-acetyltransferase - acetyl-CoA:dihydrolipoamide S-acetyltransferase - dihydrolipoamide S-acetyltransferase - dihydrolipoate acetyltransferase - dihydrolipoic transacetylase - dihydrolipoyl acetyltransferase - dihydrolipoyllysine-residue acetyltransferase - enzyme-dihydrolipoyllysine:acetyl-CoA S-acetyltransferase - lipoate acetyltransferase - lipoate transacetylase - lipoic acetyltransferase - lipoic acid acetyltransferase - lipoic transacetylase - lipoylacetyltransferase - thioltransacetylase A - transacetylase X - - - - - - - - - - - - - - 14240 "pyruvate kinase activity" - - - - - - 2.7.1.40 - - - - - - GO:0004743 - - - - - - PEPDEPHOS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate. - ATP:pyruvate 2-O-phosphotransferase - GO:0004743 - phosphoenol transphosphorylase - phosphoenolpyruvate kinase - pyruvate kinase - - - - - - - - - - - - - 2.5.1.9 - - - - - - GO:0004746 - - - - - - RIBOFLAVIN-SYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine.; - 6 2 3-butanediyltransferase - GO:0004746 - heavy riboflavin synthase - light riboflavin synthase - lumazine synthase - riboflavin synthase - riboflavin synthetase - riboflavine synthase - riboflavine synthetase - vitamin B2 synthase - - - - - - - - - - - - - - 2.7.1.15 - - - - - - GO:0004747 - - - - - - RIBOKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate. - ATP:D-ribose 5-phosphotransferase - D-ribokinase - GO:0004747 - deoxyribokinase - ribokinase - - - - - - - - - - - - 1.17.4.1 - - - - - - GO:0004748 - - - - - - RIBONUCLEOSIDE-DIP-REDUCTI-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. - 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase - 2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase - GO:0004748 - RNR - nucleoside diphosphate reductase - purine pyrimidine nucleoside diphosphate reduction - ribonucleoside 5'-diphosphate reductase - ribonucleoside diphosphate reductase - ribonucleoside-diphosphate reductase - ribonucleotide diphosphate reductase - ribonucleotide reductase - - - - - - - - - - - - 14245 "ribose phosphate diphosphokinase activity" - - - - - - 2.7.6.1 - - - - - - GO:0004749 - - - - - - PRPPSYN-RXN - - - - - - PWY0-662 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.; - 5-phosphoribose pyrophosphorylase - 5-phosphoribosyl-1-pyrophosphate synthetase - 5-phosphoribosyl-alpha-1-pyrophosphate synthetase - ATP:D-ribose-5-phosphate diphosphotransferase - GO:0004749 - PP-ribose P synthetase - PPRibP synthetase - PRPP synthetase - phosphoribosyl diphosphate synthetase - phosphoribosyl pyrophosphate synthetase - phosphoribosyl-diphosphate synthetase - phosphoribosylpyrophosphate synthase - phosphoribosylpyrophosphate synthetase - pyrophosphoribosylphosphate synthetase - ribophosphate pyrophosphokinase - ribose phosphate diphosphokinase - ribose-5-phosphate pyrophosphokinase - ribose-phosphate diphosphokinase - ribose-phosphate pyrophosphokinase - - - - - - - - - - - - - 14262 "ribulose-phosphate 3-epimerase activity" - - - - - - 5.1.3.1 - - - - - - GO:0004750 - - - - - - RIBULP3EPIM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate. - D-ribulose 5-phosphate epimerase - D-ribulose phosphate-3-epimerase - D-ribulose-5-P 3-epimerase - D-ribulose-5-phosphate 3-epimerase - D-ribulose-5-phosphate epimerase - D-xylulose-5-phosphate 3-epimerase - GO:0004750 - erythrose-4-phosphate epimerase - erythrose-4-phosphate isomerase - pentose-5-phosphate 3-epimerase - phosphoketopentose 3-epimerase - phosphoketopentose epimerase - phosphoribulose epimerase - ribulose 5-phosphate 3-epimerase - ribulose-phosphate 3-epimerase - xylulose phosphate 3-epimerase - - - - - - - - - - - - - 14263 "ribose-5-phosphate isomerase activity" - - - - - - 5.3.1.6 - - - - - - GO:0004751 - - - - - - RIB5PISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. - 5-phosphoribose isomerase - D-ribose 5-phosphate isomerase - D-ribose-5-phosphate aldose-ketose-isomerase - D-ribose-5-phosphate ketol-isomerase - GO:0004751 - phosphopentoseisomerase - phosphopentosisomerase - phosphoriboisomerase - ribose 5-phosphate epimerase - ribose phosphate isomerase - ribose-5-phosphate isomerase - - - - - - - - - - - - - 1.1.1.25 - - - - - - GO:0004764 - - - - - - SHIKIMATE-5-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: shikimate + NADP+ = 5-dehydroshikimate + NADPH + H+. - 5-dehydroshikimate reductase - 5-dehydroshikimic reductase - 5-oxidoreductase - DHS reductase - GO:0004764 - dehydroshikimic reductase - oxidoreductase - shikimate 5-dehydrogenase - shikimate oxidoreductase - - - - - - - - - - - - - - 2.7.1.71 - - - - - - GO:0004765 - - - - - - SHIKIMATE-KINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + shikimate = ADP + shikimate 3-phosphate. - ATP:shikimate 3-phosphotransferase - GO:0004765 - shikimate kinase - shikimate kinase II - - - - - - - - - - - - - 14296 "spermidine synthase activity" - - - - - - 2.5.1.16 - - - - - - GO:0004766 - - - - - - SPERMIDINESYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosylmethioninamine + putrescine = 5'-methylthioadenosine + spermidine. - GO:0004766 - S-adenosylmethioninamine:putrescine 3-aminopropyltransferase - SpeE - aminopropyltransferase - putrescine aminopropyltransferase - spermidine synthase - spermidine synthetase - - - - - - - - - - - - 14321 "succinate-CoA ligase (ADP-forming) activity" - - - - - - 6.2.1.5 - - - - - - GO:0004775 - - - - - - SUCCCOASYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate. - A-SCS - A-STK - GO:0004775 - succinate thiokinase - succinate-CoA ligase (ADP-forming) - succinate:CoA ligase - succinic thiokinase - succinyl coenzyme A synthetase - succinyl-CoA synthetase - - - - - - - - - - - - 14341 "sulfate adenylyltransferase (ATP) activity" - - - - - - 2.7.7.4 - - - - - - GO:0004781 - - - - - - SULFATE-ADENYLYLTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + SO4(2-) (sulfate) = diphosphate + adenylylsulfate. - ATP sulfurylase - ATP-sulfurylase - ATP:sulfate adenylyltransferase - GO:0004781 - adenosine-5'-triphosphate sulfurylase - adenosinetriphosphate sulfurylase - adenylylsulfate pyrophosphorylase - sulfate adenylate transferase - sulfate adenylyltransferase (ATP) - sulfurylase - sulphate adenylyltransferase - - - - - - - - - - - - 1.8.1.2 - - - - - - GO:0004783 - - - - - - SULFITE-REDUCT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: H2S + 3 NADP+ + 3 H2O = SO3(2-) (sulfite) + 3 NADPH + 3 H+. - GO:0004783 - H2S-NADP oxidoreductase - NADPH-dependent sulfite reductase - NADPH-sulfite reductase - NADPH:sulfite reductase flavoprotein - hydrogen-sulfide:NADP+ oxidoreductase - sulfite reductase - sulfite reductase (NADPH) - sulphite reductase - - - - - - - - - - - - - 1.15.1.1 - - - - - - GO:0004784 - - - - - - GO:0004785 - - - - - - GO:0008382 - - - - - - GO:0008383 - - - - - - GO:0016954 - - - - - - SUPEROX-DISMUT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + H2O2.; - Cu Zn-SOD - Cu-Zn superoxide dismutase - Fe-SOD - GO:0004784 - Mn Fe superoxide dismutase - Mn-SOD - SOD - SOD-1 - SOD-2 - SOD-3 - SOD-4 - SODF - SODS - copper zinc superoxide dismutase - cuprein - cytocuprein - erythrocuprein - ferrisuperoxide dismutase - hemocuprein - hepatocuprein - iron superoxide dismutase - iron superoxide oxidoreductase - manganese superoxide dismutase - manganese superoxide oxidoreductase - nickel superoxide dismutase - nickel superoxide oxidoreductase - superoxide dismutase - superoxide dismutase I - superoxide dismutase II - superoxide:superoxide oxidoreductase - zinc superoxide oxidoreductase - - - - - - - - - - - - 14348 "thiamin diphosphokinase activity" - - - - - - 2.7.6.2 - - - - - - GO:0004788 - - - - - - THIAMIN-PYROPHOSPHOKINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + thiamin = AMP + thiamin diphosphate. - ATP:thiamin pyrophosphotransferase - ATP:thiamine diphosphotransferase - GO:0004788 - TPTase - thiamin diphosphokinase - thiamin pyrophosphokinase - thiamin pyrophosphotransferase - thiamin:ATP pyrophosphotransferase - thiamine diphosphokinase - thiamine pyrophosphokinase - thiaminokinase - - - - - - - - - - - - - 2.5.1.3 - - - - - - GO:0004789 - - - - - - THI-P-SYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = diphosphate + thiamin monophosphate. - 2-methyl-4-aminopyrimidine-5-methenyltransferase - GO:0004789 - TMP diphosphorylase - TMP pyrophosphorylase - TMP-PPase - thiamin-phosphate diphosphorylase - thiamin-phosphate pyrophosphorylase - thiamine monophosphate pyrophosphorylase - thiamine phosphate pyrophosphorylase - thiamine-phosphate diphosphorylase - thiamine-phosphate pyrophosphorylase - thiamine-phosphate synthase - - - - - - - - - - - - - 1.8.1.9 - - - - - - 14367 "thioredoxin-disulfide reductase activity" - - - - - - GO:0004791 - - - - - - THIOREDOXIN-REDUCT-NADPH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: thioredoxin + NADP+ = thioredoxin disulfide + NADPH + H+. - GO:0004791 - NADP--thioredoxin reductase - NADPH--thioredoxin reductase - NADPH2:oxidized thioredoxin oxidoreductase - NADPH:oxidized thioredoxin oxidoreductase - thioredoxin disulfide reductase - thioredoxin reductase - thioredoxin-disulfide reductase - thioredoxin-disulphide reductase - thioredoxin:NADP+ oxidoreductase - - - - - - - - - - - - 4.3.1.19 - - - - - - GO:0004794 - - - - - - THREDEHYD-RXN - - - - - - e0306 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3. - GO:0004794 - L-serine dehydratase - L-threonine ammonia-lyase - L-threonine deaminase - L-threonine dehydratase - L-threonine hydro-lyase - serine deaminase - threonine ammonia-lyase - threonine deaminase - threonine dehydrase - threonine dehydratase - - - - - - - - - - - - - 4.2.3.1 - - - - - - GO:0004795 - - - - - - THRESYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O-phospho-L-homoserine + H2O = L-threonine + phosphate. - GO:0004795 - O-phospho-L-homoserine phospho-lyase - threonine synthase - threonine synthetase - - - - - - - - - - - - 2.7.1.21 - - - - - - GO:0004797 - - - - - - THYKI-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate. - 2'-deoxythymidine kinase - ATP:thymidine 5'-phosphotransferase - GO:0004797 - deoxythymidine kinase - thymidine kinase - - - - - - - - - - - - - - 2.7.4.9 - - - - - - DTMPKI-RXN - - - - - - GO:0004798 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. - ATP:dTMP phosphotransferase - GO:0004798 - TMPK - dTMP kinase - deoxythymidine 5'-monophosphate kinase - thymidine 5'-monophosphate kinase - thymidine monophosphate kinase - thymidylate kinase - thymidylate monophosphate kinase - thymidylic acid kinase - thymidylic kinase - - - - - - - - - - - - 14376 "thymidylate synthase activity" - - - - - - 2.1.1.45 - - - - - - GO:0004799 - - - - - - THYMIDYLATESYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP. - 5 10-methylenetetrahydrofolate:dUMP C-methyltransferase - GO:0004799 - TMP synthetase - dTMP synthase - methylenetetrahydrofolate:dUMP C-methyltransferase - thymidylate synthase - thymidylate synthetase - - - - - - - - - - - - 15049 "transaldolase activity" - - - - - - 2.2.1.2 - - - - - - GO:0004801 - - - - - - TRANSALDOL-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate. - GO:0004801 - dihydroxyacetone transferase - dihydroxyacetonetransferase - glycerone transferase - sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase - transaldolase - - - - - - - - - - - - 15050 "transketolase activity" - - - - - - 1TRANSKETO-RXN - - - - - - 2.2.1.1 - - - - - - GO:0004802 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor. - GO:0004802 - fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase - glycoaldehyde transferase - glycolaldehydetransferase - sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase - transketolase - - - - - - - - - - - - - GO:0004803 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transposition of transposable elements or transposons. Transposases are involved in site-specific DNA recombination required for transposition in bacteria and other organisms. - GO:0004803 - transposase - - - - - - - - - - - - - 15058 "triacylglycerol lipase activity" - - - - - - 3.1.1.3 - - - - - - GO:0004806 - - - - - - TRIACYLGLYCEROL-LIPASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion. - GA 56 - GEH - GO:0004806 - PPL - amano AP - amano B - amano CE - amano CES - amano P - amno N-AP - butyrinase - cacordase - capalase L - glycerol ester hydrolase - glycerol-ester hydrolase - heparin releasable hepatic lipase - hepatic lipase - hepatic monoacylglycerol acyltransferase - lipazin - liver lipase - meito MY 30 - meito sangyo OF lipase - post-heparin plasma protamine-resistant lipase - salt-resistant post-heparin lipase - steapsin - takedo 1969-4-9 - triacetinase - triacylglycerol acylhydrolase - triacylglycerol ester hydrolase - triacylglycerol lipase - tributyrase - tributyrin esterase - tributyrinase - triglyceridase - triglyceride hydrolase - triglyceride lipase - triolein hydrolase - tween hydrolase - tween-hydrolyzing esterase - tweenase - tweenesterase - - - - - - - - - - - - - 5.3.1.1 - - - - - - 70450 "triose-phosphate isomerase activity" - - - - - - GO:0004807 - - - - - - TRIOSEPISOMERIZATION-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate. - D-glyceraldehyde-3-phosphate aldose-ketose-isomerase - D-glyceraldehyde-3-phosphate ketol-isomerase - GO:0004807 - phosphotriose isomerase - triose phosphate mutase - triose phosphoisomerase - triose-phosphate isomerase - triosephosphate isomerase - triosephosphate mutase - - - - - - - - - - - - 2.7.7.25 - - - - - - GO:0004810 - - - - - - TRNA-ADENYLYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + tRNA(n) = diphosphate + tRNA(n+1).; - -C-C-A pyrophosphorylase - ATP nucleotidyltransferase - ATP:tRNA adenylyltransferase - CCA-adding enzyme - GO:0004810 - nucleotidyltransferase - ribonucleic cytidylic cytidylic adenylic pyrophosphorylase - ribonucleic cytidylyltransferase - tRNA - tRNA CCA-diphosphorylase - tRNA CCA-pyrophosphorylase - tRNA adenylyltransferase - tRNA-nucleotidyltransferase - transfer RNA adenylyltransferase - transfer ribonucleate adenyltransferase - transfer ribonucleate adenylyltransferase - transfer ribonucleate cytidylyltransferase - transfer ribonucleate nucleotidyltransferase - transfer ribonucleic acid nucleotidyl transferase - transfer ribonucleic adenylyl transferase - transfer ribonucleic-terminal trinucleotide nucleotidyltransferase - transfer-RNA nucleotidyltransferase - - - - - - - - - - - - - 2.5.1.8 - - - - - - GO:0004811 - - - - - - TRNA-ISOPENTENYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: isopentenyl diphosphate + tRNA = diphosphate + tRNA containing 6-isopentenyladenosine. - GO:0004811 - IPP transferase - delta2-isopentenyl pyrophosphate:tRNA-delta2-isopentenyl transferase - delta2-isopentenyl pyrophosphate:transfer ribonucleic acid delta2-isopentenyltransferase - isopentenyl-diphosphate:tRNA isopentenyltransferase - tRNA isopentenyltransferase - transfer ribonucleate isopentenyltransferase - - - - - - - - - - - - - 6.1.1.- - - - - - - GO:0004812 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of pyrophosphate and AMP. - GO:0004812 - aminoacyl-tRNA ligase - aminoacyl-tRNA synthetase - - - - - - - - - - - - - 15078 "alanine-tRNA ligase activity" - - - - - - 6.1.1.7 - - - - - - ALANINE--TRNA-LIGASE-RXN - - - - - - GO:0004813 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). - Ala-tRNA synthetase - AlaRS - GO:0004813 - L-alanine:tRNAAla ligase - alanine tRNA synthetase - alanine transfer RNA synthetase - alanine translase - alanine-tRNA ligase - alanine-transfer RNA ligase - alanyl-tRNA synthetase - alanyl-transfer RNA synthetase - alanyl-transfer ribonucleate synthase - alanyl-transfer ribonucleate synthetase - alanyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15079 "arginine-tRNA ligase activity" - - - - - - 6.1.1.19 - - - - - - ARGININE--TRNA-LIGASE-RXN - - - - - - GO:0004814 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). - GO:0004814 - L-arginine:tRNAArg ligase - arginine translase - arginine-tRNA ligase - arginine-tRNA synthetase - arginyl transfer ribonucleic acid synthetase - arginyl-tRNA synthetase - arginyl-transfer RNA synthetase - arginyl-transfer ribonucleate synthetase - - - - - - - - - - - - - 15081 "aspartate-tRNA ligase activity" - - - - - - 6.1.1.12 - - - - - - ASPARTATE--TRNA-LIGASE-RXN - - - - - - GO:0004815 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). - GO:0004815 - L-aspartate:tRNAAsp ligase - aspartate-tRNA ligase - aspartic acid translase - aspartyl ribonucleate synthetase - aspartyl ribonucleic synthetase - aspartyl-tRNA synthetase - aspartyl-transfer RNA synthetase - aspartyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15083 "asparagine-tRNA ligase activity" - - - - - - 6.1.1.22 - - - - - - ASPARAGINE--TRNA-LIGASE-RXN - - - - - - GO:0004816 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn). - GO:0004816 - L-asparagine:tRNAAsn ligase - asparagine translase - asparagine-tRNA ligase - asparaginyl transfer RNA synthetase - asparaginyl transfer ribonucleic acid synthetase - asparaginyl-tRNA synthetase - asparaginyl-transfer ribonucleate synthetase - asparagyl-transfer RNA synthetase - - - - - - - - - - - - - 15084 "cysteine-tRNA ligase activity" - - - - - - 6.1.1.16 - - - - - - CYSTEINE--TRNA-LIGASE-RXN - - - - - - GO:0004817 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys). - GO:0004817 - L-cysteine:tRNACys ligase - cysteine translase - cysteine-tRNA ligase - cysteinyl-tRNA synthetase - cysteinyl-transfer ribonucleate synthetase - cysteinyl-transferRNA synthetase - - - - - - - - - - - - - 15085 "glutamate-tRNA ligase activity" - - - - - - 6.1.1.17 - - - - - - GLURS-RXN - - - - - - GO:0004818 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). - GO:0004818 - L-glutamate:tRNAGlu ligase - glutamate-tRNA ligase - glutamate-tRNA synthetase - glutamic acid translase - glutamyl-tRNA synthetase - glutamyl-transfer RNA synthetase - glutamyl-transfer ribonucleate synthetase - glutamyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15097 "glycine-tRNA ligase activity" - - - - - - 6.1.1.14 - - - - - - GLYCINE--TRNA-LIGASE-RXN - - - - - - GO:0004820 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). - GO:0004820 - glycine-tRNA ligase - glycine:tRNAGly ligase - glycyl translase - glycyl-tRNA synthetase - glycyl-transfer RNA synthetase - glycyl-transfer ribonucleate synthetase - glycyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15098 "histidine-tRNA ligase activity" - - - - - - 6.1.1.21 - - - - - - GO:0004821 - - - - - - HISTIDINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His). - GO:0004821 - L-histidine:tRNAHis ligase - histidine translase - histidine-tRNA ligase - histidyl-tRNA synthetase - histidyl-transfer ribonucleate synthetase - - - - - - - - - - - - - 15099 "isoleucine-tRNA ligase activity" - - - - - - 6.1.1.5 - - - - - - GO:0004822 - - - - - - ISOLEUCINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile). - GO:0004822 - L-isoleucine:tRNAIle ligase - isoleucine translase - isoleucine-tRNA ligase - isoleucine-tRNA synthetase - isoleucine-transfer RNA ligase - isoleucyl-tRNA synthetase - isoleucyl-transfer RNA synthetase - isoleucyl-transfer ribonucleate synthetase - - - - - - - - - - - - - 15100 "leucine-tRNA ligase activity" - - - - - - 6.1.1.4 - - - - - - GO:0004823 - - - - - - LEUCINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu). - GO:0004823 - L-leucine:tRNALeu ligase - leucine translase - leucine-tRNA ligase - leucine-tRNA synthetase - leucyl-tRNA synthetase - leucyl-transfer RNA synthetase - leucyl-transfer ribonucleate synthetase - leucyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15101 "lysine-tRNA ligase activity" - - - - - - 6.1.1.6 - - - - - - GO:0004824 - - - - - - LYSINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). - GO:0004824 - L-lysine-transfer RNA ligase - L-lysine:tRNALys ligase - lysine translase - lysine-tRNA ligase - lysine-tRNA synthetase - lysyl-tRNA synthetase - lysyl-transfer RNA synthetase - lysyl-transfer ribonucleate synthetase - - - - - - - - - - - - - 15102 "methionine-tRNA ligase activity" - - - - - - 6.1.1.10 - - - - - - GO:0004825 - - - - - - METHIONINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met). - GO:0004825 - L-methionine:tRNAMet ligase - MetRS - methionine translase - methionine-tRNA ligase - methionyl-tRNA synthetase - methionyl-transfer RNA synthetase - methionyl-transfer ribonucleate synthetase - methionyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15104 "phenylalanine-tRNA ligase activity" - - - - - - 6.1.1.20 - - - - - - GO:0004826 - - - - - - PHENYLALANINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). - GO:0004826 - L-phenylalanine:tRNAPhe ligase - L-phenylalanyl-tRNA synthetase - phenylalanine translase - phenylalanine-tRNA ligase - phenylalanine-tRNA synthetase - phenylalanyl-tRNA ligase - phenylalanyl-tRNA synthetase - phenylalanyl-transfer RNA ligase - phenylalanyl-transfer RNA synthetase - phenylalanyl-transfer ribonucleate synthetase - - - - - - - - - - - - - 15107 "proline-tRNA ligase activity" - - - - - - 6.1.1.15 - - - - - - GO:0004827 - - - - - - PROLINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). - GO:0004827 - L-proline:tRNAPro ligase - proline translase - proline-tRNA ligase - prolinyl-tRNA ligase - prolyl-s-RNA synthetase - prolyl-tRNA synthetase - prolyl-transfer ribonucleate synthetase - prolyl-transfer ribonucleic acid synthetase - prolyl-transferRNA synthetase - - - - - - - - - - - - - 15110 "serine-tRNA ligase activity" - - - - - - 6.1.1.11 - - - - - - GO:0004828 - - - - - - SERINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). - GO:0004828 - L-serine:tRNASer ligase - SerRS - serine translase - serine-tRNA ligase - seryl-tRNA synthetase - seryl-transfer RNA synthetase - seryl-transfer ribonucleate synthetase - seryl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15113 "threonine-tRNA ligase activity" - - - - - - 6.1.1.3 - - - - - - GO:0004829 - - - - - - THREONINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr). - GO:0004829 - L-threonine:tRNAThr ligase - TRS - threonine translase - threonine-tRNA ligase - threonine-transfer ribonucleate synthetase - threonyl ribonucleic synthetase - threonyl-tRNA synthetase - threonyl-transfer RNA synthetase - threonyl-transfer ribonucleate synthetase - threonyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15130 "tryptophan-tRNA ligase activity" - - - - - - 6.1.1.2 - - - - - - GO:0004830 - - - - - - TRYPTOPHAN--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp). - GO:0004830 - L-tryptophan-tRNATrp ligase - L-tryptophan:tRNATrp ligase - TrpRS - ligase - tryptophan translase - tryptophan-tRNA ligase - tryptophanyl ribonucleic synthetase - tryptophanyl-tRNA synthase - tryptophanyl-tRNA synthetase - tryptophanyl-transfer RNA synthetase - tryptophanyl-transfer ribonucleate synthetase - tryptophanyl-transfer ribonucleic acid synthetase - tryptophanyl-transfer ribonucleic synthetase - - - - - - - - - - - - - 15131 "tyrosine-tRNA ligase activity" - - - - - - 6.1.1.1 - - - - - - GO:0004831 - - - - - - TYROSINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + L-tyrosyl-tRNA(Tyr). - GO:0004831 - L-tyrosine-tRNATyr ligase - L-tyrosine:tRNATyr ligase - ligase - tyrosine tRNA synthetase - tyrosine translase - tyrosine-tRNA ligase - tyrosine-transfer RNA ligase - tyrosine-transfer ribonucleate synthetase - tyrosyl-tRNA ligase - tyrosyl-tRNA synthetase - tyrosyl-transfer RNA synthetase - tyrosyl-transfer ribonucleate synthetase - tyrosyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 15132 "valine-tRNA ligase activity" - - - - - - 6.1.1.9 - - - - - - GO:0004832 - - - - - - VALINE--TRNA-LIGASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-tRNA(Val). - GO:0004832 - L-valine:tRNAVal ligase - valine transfer ribonucleate ligase - valine translase - valine-tRNA ligase - valyl-tRNA synthetase - valyl-transfer RNA synthetase - valyl-transfer ribonucleate synthetase - valyl-transfer ribonucleic acid synthetase - - - - - - - - - - - - - 4.2.1.20 - - - - - - GO:0004834 - - - - - - TRYPSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. - GO:0004834 - L-serine hydro-lyase - L-serine hydro-lyase [adding 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming] - L-tryptophan synthetase - indoleglycerol phosphate aldolase - tryptophan desmolase - tryptophan synthase - tryptophan synthetase - - - - - - - - - - - - 15141 "L-tyrosine:2-oxoglutarate aminotransferase activity" - - - - - - 2.6.1.5 - - - - - - GO:0004838 - - - - - - TYROSINE-AMINOTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. - GO:0004838 - L-phenylalanine 2-oxoglutarate aminotransferase - L-tyrosine aminotransferase - L-tyrosine:2-oxoglutarate aminotransferase - TyrAT - glutamic phenylpyruvic aminotransferase - glutamic-hydroxyphenylpyruvic transaminase - phenylalanine aminotransferase - phenylalanine transaminase - phenylalanine-alpha-ketoglutarate transaminase - phenylpyruvate transaminase - phenylpyruvic acid transaminase - tyrosine aminotransferase - tyrosine transaminase - tyrosine-2-ketoglutarate aminotransferase - tyrosine-alpha-ketoglutarate aminotransferase - tyrosine-alpha-ketoglutarate transaminase - - - - - - - - - - - - - 15174 "uracil DNA N-glycosylase activity" - - - - - - 3.2.2.- - - - - - - GO:0004844 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine. - GO:0004844 - uracil DNA N-glycosylase - uracil-DNA glycosylase - - - - - - - - - - - - - 15175 "uracil phosphoribosyltransferase activity" - - - - - - 2.4.2.9 - - - - - - GO:0004845 - - - - - - URACIL-PRIBOSYLTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate. - GO:0004845 - UMP diphosphorylase - UMP pyrophosphorylase - UMP:diphosphate phospho-alpha-D-ribosyltransferase - UMP:pyrophosphate phosphoribosyltransferase - UPRTase - uracil phosphoribosyltransferase - uridine 5'-phosphate pyrophosphorylase - uridine monophosphate pyrophosphorylase - uridylate pyrophosphorylase - uridylic pyrophosphorylase - - - - - - - - - - - - 1.7.3.3 - - - - - - GO:0004846 - - - - - - URATE-OXIDASE-RXN - - - - - - e0832 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: urate + O2 + H2O = 5-hydroxyisourate + H2O2. - GO:0004846 - urate oxidase - urate:oxygen oxidoreductase - uric acid oxidase - uricase - uricase II - - - - - - - - - - - - 2.7.1.48 - - - - - - GO:0004849 - - - - - - URIDINEKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + uridine = ADP + UMP. - ATP:uridine 5'-phosphotransferase - GO:0004849 - pyrimidine ribonucleoside kinase - uridine kinase - uridine kinase reaction - uridine monophosphokinase - uridine phosphokinase - uridine-cytidine kinase - - - - - - - - - - - - - 2.1.1.107 - - - - - - GO:0004851 - - - - - - UROPORIIIMETHYLTRANSA-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 S-adenosyl-L-methionine + uroporphyrin III = 2 S-adenosyl-L-homocysteine + precorrin-2. - CobA - CysG - GO:0004851 - S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase - S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase - S-adenosyl-L-methionine:uroporphyrinogen-III C-methyltransferase - SUMT - SirA - adenosylmethionine-uroporphyrinogen III methyltransferase - urogen III methylase - uroporphyrin-III C-methyltransferase - uroporphyrinogen III methylase - uroporphyrinogen methyltransferase - uroporphyrinogen-III C-methyltransferase - uroporphyrinogen-III methylase - uroporphyrinogen-III methyltransferase - - - - - - - - - - - - - 15200 "uroporphyrinogen-III synthase activity" - - - - - - 4.2.1.75 - - - - - - GO:0004852 - - - - - - UROGENIIISYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: hydroxymethylbilane = uroporphyrinogen-III + H2O. - GO:0004852 - URO-synthase - hydroxymethylbilane hydro-lyase - porphobilinogenase - uroporphyrinogen III cosynthase - uroporphyrinogen isomerase - uroporphyrinogen-III cosynthase - uroporphyrinogen-III cosynthetase - uroporphyrinogen-III synthase - - - - - - - - - - - - - 15202 "uroporphyrinogen decarboxylase activity" - - - - - - 4.1.1.37 - - - - - - GO:0004853 - - - - - - UROGENDECARBOX-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. - GO:0004853 - porphyrinogen carboxy-lyase - porphyrinogen decarboxylase - uroporphyrinogen III decarboxylase - uroporphyrinogen decarboxylase - uroporphyrinogen-III carboxy-lyase - - - - - - - - - - - - 1.17.1.4 - - - - - - GO:0004854 - - - - - - RXN0-901 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: xanthine + NAD+ + H2O = urate + NADH + H+. - GO:0004854 - NAD-xanthine dehydrogenase - xanthine NAD+ oxidoreductase - xanthine dehydrogenase - xanthine oxidoreductase - xanthine-NAD oxidoreductase - xanthine:NAD+ oxidoreductase - - - - - - - - - - - - - - 2.7.1.17 - - - - - - GO:0004856 - - - - - - XYLULOKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-xylulose = ADP + D-xylulose 5-phosphate. - ATP:D-xylulose 5-phosphotransferase - D-xylulokinase - GO:0004856 - xylulokinase - xylulose kinase - - - - - - - - - - - - GO:0004860 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein. - GO:0004860 - protein kinase inhibitor - - - - - - - - - - - - 15233 "serine-type endopeptidase inhibitor activity" - - - - - - GO:0004867 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme. - GO:0004867 - serine protease inhibitor - serine proteinase inhibitor - serine-type endopeptidase inhibitor - serpin - - - - - - - - - - - - GO:0004871 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell. - GO:0004871 - signal transducer - - - - - - - - - - - - - GO:0004872 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Combining with an extracellular or intracellular messenger to initiate a change in cell activity. - GO:0004872 - receptor - receptor guanylate cyclase - - - - - - - - - - - - - GO:0004888 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle. - GO:0004888 - transmembrane receptor - - - - - - - - - - - - - GO:0005102 - - - - - - Ligand_(biochemistry) - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. - GO:0005102 - receptor binding - receptor ligand - receptor-associated protein - - - - - - - - - - - - - GO:0005186 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The activity of binding to and activating specific cell surface receptors, thereby inducing behavioral, developmental, or physiological response(s) from a responding organism or cell. The substance may be released or retained on the cell surface. Pheromones may serve as a specific attractant, social communicator, or sexual stimulant. - GO:0005186 - pheromone - - - - - - - - - - - - - GO:0005198 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell. - GO:0005198 - structural molecule - - - - - - - - - - - - - 1391 "transporter activity" - - - - - - GO:0005215 - - - - - - GO:0005478 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells. - GO:0005215 - small-molecule carrier or transporter - transporter - - - - - - - - - - - - - GO:0005216 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.; - GO:0005216 - ion channel - - - - - - - - - - - - GO:0005249 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel. - GO:0005249 - voltage gated potassium channel - voltage-dependent potassium channel - voltage-gated potassium channel - voltage-gated potassium ion channel - voltage-sensitive potassium channel - - - - - - - - - - - - - - 13089 "cation channel activity" - - - - - - GO:0005261 - - - - - - GO:0015281 - - - - - - GO:0015338 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient. - GO:0005261 - cation channel - cation diffusion facilitator - nonselective cation channel - - - - - - - - - - - - GO:0005283 - - - - - - GO:0005285 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + Na+(out) = amino acid(in) + Na+(in). - GO:0005283 - glutamate aspartate:sodium symporter - isoleucine valine:sodium symporter - sodium amino acid transporter - sodium excitatory amino acid cotransporter - sodium excitatory amino acid symporter - sodium:amino acid symporter - sodium:amino acid transporter - threonine serine:sodium symporter - - - - - - - - - - - - - GO:0005298 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: proline(out) + Na+(out) = proline(in) + Na+(in). - GO:0005298 - proline:sodium symporter - sodium proline symporter - - - - - - - - - - - - - GO:0005315 - - - - - - GO:0005317 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a inorganic phosphate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. - GO:0005315 - inorganic phosphate transmembrane transporter - - - - - - - - - - - - GO:0005328 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neurotransmitter(out) + Na+(out) = neurotransmitter(in) + Na+(in). - GO:0005328 - neurotransmitter:sodium symporter - sodium neurotransmitter symporter - - - - - - - - - - - - GO:0005337 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. - GO:0005337 - intracellular nucleoside transmembrane transporter - nucleoside transmembrane transporter - - - - - - - - - - - - GO:0005344 - - - - - - GO:0015033 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of oxygen into, out of, within or between cells. - GO:0005344 - globin - hemerythrin - hemocyanin - oxygen transporter - oxygen-carrying - - - - - - - - - - - - GO:0005351 - - - - - - GO:0005403 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in). - GO:0005351 - cation sugar symporter - hydrogen:sugar symporter - hydrogen:sugar transporter - proton:sugar symporter - sugar porter - sugar transporter - sugar:hydrogen ion symporter - sugar:hydrogen symporter - - - - - - - - - - - - 14118 "glucose transmembrane transporter activity" - - - - - - GO:0005355 - - - - - - GO:0015579 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other. - GO:0005355 - galactose glucose porter - glucose permease - glucose transmembrane transporter - lactose glucose efflux transporter - - - - - - - - - - - - GO:0005363 - - - - - - GO:0015581 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of maltose from one side of the membrane to the other. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the enzymatic breakdown of glycogen and starch. - GO:0005363 - maltose porter - maltose transmembrane transporter - - - - - - - - - - - - GO:0005375 - - - - - - GO:0005378 - - - - - - GO:0005379 - - - - - - GO:0005380 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of copper (Cu) ions from one side of a membrane to the other. - GO:0005375 - copper ion transmembrane transporter - intracellular copper ion transporter - plasma membrane copper transporter - - - - - - - - - - - - GO:0005381 - - - - - - GO:0005382 - - - - - - GO:0016033 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of iron (Fe) ions from one side of a membrane to the other. - GO:0005381 - iron ion transmembrane transporter - iron transporter - multicopper ferroxidase iron transport mediator - transmembrane iron ion permease - transmembrane iron permease - zinc iron permease - - - - - - - - - - - - - 3.6.3.8 - - - - - - 3.6.3.8-RXN - - - - - - GO:0005388 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). - ATP phosphohydrolase - ATPase - Ca2+-pumping ATPase - Ca2+-transporting ATPase - GO:0005388 - calcium ABC transporter - calcium efflux ATPase - calcium pump - calcium transporting ATPase - calcium-translocating P-type ATPase - calcium-transporting ATPase - plasma membrane Ca-ATPase - reticulum Ca2+-ATPase - sarcoplasmic reticulum ATPase - - - - - - - - - - - - - GO:0005415 - - - - - - GO:0008522 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + Na+(out) = nucleoside(in) + Na+(in). - GO:0005415 - nucleoside-sodium cotransporter - nucleoside:sodium symporter - sodium-dependent nucleoside transporter - - - - - - - - - - - - - - GO:0005451 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monovalent cation(out) + H+(in) = monovalent cation(in) + H+(out). - GO:0005451 - monovalent cation:hydrogen antiporter - monovalent cation:proton antiporter - - - - - - - - - - - - - Binding_(molecular) - - - - - - GO:0005488 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. - GO:0005488 - binding - ligand - - - - - - - - - - - - - GO:0005506 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with iron (Fe) ions.; - GO:0005506 - iron binding - iron ion binding - - - - - - - - - - - - - GO:0005507 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with copper (Cu) ions. - GO:0005507 - copper binding - copper cadmium binding - copper ion binding - - - - - - - - - - - - - GO:0005509 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with calcium ions (Ca2+).; - GO:0005509 - calcium ion binding - calcium ion storage - - - - - - - - - - - - - 6125 "protein binding" - - - - - - GO:0005515 - - - - - - GO:0045308 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).; - GO:0005515 - alpha-2 macroglobulin receptor-associated protein - protein amino acid binding - protein binding - protein degradation tagging - protein folding chaperone - protein tagging - - - - - - - - - - - - 1403 "ATP binding" - - - - - - GO:0005524 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. - ATP binding - GO:0005524 - - - - - - - - - - - - 12514 "GTP binding" - - - - - - GO:0005525 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with GTP, guanosine triphosphate. - GO:0005525 - GTP binding - - - - - - - - - - - - - GO:0005529 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any mono-, di- or trisaccharide carbohydrate. - GO:0005529 - sugar binding - - - - - - - - - - - - GO:0005575 - - - - - - GO:0008372 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. - GO:0005575 - cellular component - cellular component unknown - cellular_component - - - - - - - - - - - - - Extracellular - - - - - - GO:0005576 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. - GO:0005576 - extracellular - extracellular region - - - - - - - - - - - - Cell_wall - - - - - - GO:0005618 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan. - GO:0005618 - cell wall - - - - - - - - - - - - GO:0005622 - - - - - - Intracellular - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. - GO:0005622 - internal to cell - intracellular - nucleocytoplasm - protoplasm - - - - - - - - - - - - Cell_nucleus - - - - - - GO:0005634 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. - GO:0005634 - cell nucleus - nucleus - - - - - - - - - - - - - GO:0005658 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis. - DNA polymerase alpha:primase complex - GO:0005658 - alpha DNA polymerase:primase complex - heterotetrameric polymerase alpha holoenzyme - pol-prim - primosome - - - - - - - - - - - - Chromosome - - - - - - GO:0005694 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. - GO:0005694 - chromatid - chromosome - interphase chromosome - prophase chromosome - - - - - - - - - - - - GO:0005727 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Circular DNA structures that are not part of a chromosome. - GO:0005727 - extrachromosomal circular DNA - - - - - - - - - - - - Cytoplasm - - - - - - GO:0005737 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. - GO:0005737 - cytoplasm - - - - - - - - - - - - GO:0005739 - - - - - - Mitochondrion - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. - GO:0005739 - mitochondria - mitochondrion - - - - - - - - - - - - GO:0005764 - - - - - - Lysosome - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions. - GO:0005764 - lysosome - - - - - - - - - - - - - GO:0005786 - - - - - - GO:0005855 - - - - - - Signal_recognition_particle - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.; - GO:0005786 - SRP - signal recognition particle, endoplasmic reticulum targeting - signal sequence receptor complex - - - - - - - - - - - - GO:0005789 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The lipid bilayer surrounding the endoplasmic reticulum. - ER membrane - GO:0005789 - endoplasmic reticulum membrane - - - - - - - - - - - - Cytosol - - - - - - GO:0005829 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. - GO:0005829 - cytosol - - - - - - - - - - - - - GO:0000503 - - - - - - GO:0005839 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. - 20S core complex - 20S proteasome - GO:0005839 - PA28gamma-20S proteasome - macropain - proteasome core complex - - - - - - - - - - - - - GO:0005840 - - - - - - Ribosome - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. - GO:0005840 - ribosomal RNA - ribosome - - - - - - - - - - - - - Cell_membrane - - - - - - GO:0005886 - - - - - - GO:0005904 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. - GO:0005886 - bacterial inner membrane - cell membrane - cytoplasmic membrane - inner endospore membrane - juxtamembrane - plasma membrane - plasma membrane lipid bilayer - plasmalemma - - - - - - - - - - - - - GO:0005887 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.; - GO:0005887 - integral to plasma membrane - - - - - - - - - - - - GO:0005940 - - - - - - GO:0030481 - - - - - - Septin_ring - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A tight ring-shaped structure that forms in the division plane at the site of cytokinesis; composed of members of the conserved family of filament-forming proteins called septins as well as septin-associated proteins. This type of septin structure is observed at the bud neck of budding fungal cells, at the site of cell division in animal cells, at the junction between the mother cell and a pseudohyphal projection, and also within hyphae of filamentous fungi at sites where a septum will form. - GO:0005940 - septin ring - - - - - - - - - - - - - GO:0005945 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that possesses 6-phosphofructokinase activity; homodimeric, homooctameric, and allosteric homotetrameric forms are known. - 6-phosphofructokinase complex - GO:0005945 - - - - - - - - - - - - - GO:0005960 - - - - - - GO:0005961 - - - - - - GO:0070015 - - - - - - Glycine_decarboxylase_complex - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T. - GO:0005960 - glycine cleavage complex - glycine cleavage system - glycine decarboxylase complex - glycine dehydrogenase complex - glycine synthase complex - - - - - - - - - - - - - GO:0005971 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate and thioredoxin disulfide from ribonucleoside diphosphate and thioredoxin. - GO:0005971 - ribonucleoside-diphosphate reductase complex - - - - - - - - - - - - - 448487 "Metabolism of carbohydrates" - - - - - - 469617 "Metabolism of carbohydrates" - - - - - - 487336 "Metabolism of carbohydrates" - - - - - - 507287 "Metabolism of carbohydrates" - - - - - - 517301 "Metabolism of carbohydrates" - - - - - - 526186 "Metabolism of carbohydrates" - - - - - - 531076 "Metabolism of carbohydrates" - - - - - - 536449 "Metabolism of carbohydrates" - - - - - - 542153 "Metabolism of carbohydrates" - - - - - - 547511 "Metabolism of carbohydrates" - - - - - - 552109 "Metabolism of carbohydrates" - - - - - - 557702 "Metabolism of carbohydrates" - - - - - - 568311 "Metabolism of carbohydrates" - - - - - - 581513 "Metabolism of carbohydrates" - - - - - - 585745 "Metabolism of carbohydrates" - - - - - - 592407 "Metabolism of carbohydrates" - - - - - - 595291 "Metabolism of carbohydrates" - - - - - - 597267 "Metabolism of carbohydrates" - - - - - - 598076 "Metabolism of carbohydrates" - - - - - - 599604 "Metabolism of carbohydrates" - - - - - - 600550 "Metabolism of carbohydrates" - - - - - - 602409 "Metabolism of carbohydrates" - - - - - - 71387 "Metabolism of carbohydrates" - - - - - - Carbohydrate_metabolism - - - - - - GO:0005975 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. - GO:0005975 - carbohydrate metabolic process - carbohydrate metabolism - - - - - - - - - - - - - GO:0005977 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages. - GO:0005977 - glycogen metabolic process - glycogen metabolism - - - - - - - - - - - - - - 448794 "Glycogen synthesis" - - - - - - 469910 "Glycogen synthesis" - - - - - - 487616 "Glycogen synthesis" - - - - - - 507571 "Glycogen synthesis" - - - - - - 517545 "Glycogen synthesis" - - - - - - 526412 "Glycogen synthesis" - - - - - - 531235 "Glycogen synthesis" - - - - - - 536604 "Glycogen synthesis" - - - - - - 542330 "Glycogen synthesis" - - - - - - 547668 "Glycogen synthesis" - - - - - - 552255 "Glycogen synthesis" - - - - - - 557874 "Glycogen synthesis" - - - - - - 568472 "Glycogen synthesis" - - - - - - 581683 "Glycogen synthesis" - - - - - - 585831 "Glycogen synthesis" - - - - - - 592590 "Glycogen synthesis" - - - - - - 599704 "Glycogen synthesis" - - - - - - 600611 "Glycogen synthesis" - - - - - - 602513 "Glycogen synthesis" - - - - - - 70302 "Glycogen synthesis" - - - - - - GLYCOGENSYNTH-PWY - - - - - - GO:0005978 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. - GO:0005978 - glycogen anabolism - glycogen biosynthesis - glycogen biosynthetic process - glycogen formation - glycogen synthesis - - - - - - - - - - - - GO:0005993 - - - - - - TREDEGLOW-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. - GO:0005993 - mycose catabolic process - mycose catabolism - mykose catabolic process - mykose catabolism - trehalose breakdown - trehalose catabolic process - trehalose catabolism - trehalose degradation - - - - - - - - - - - - GO:0005997 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving xylulose, the ketopentose threo-2-pentulose. - GO:0005997 - xylulose metabolic process - xylulose metabolism - - - - - - - - - - - - GO:0006002 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.; - GO:0006002 - fructose 6-phosphate metabolic process - fructose 6-phosphate metabolism - - - - - - - - - - - - 448486 "Glucose metabolism" - - - - - - 469616 "Glucose metabolism" - - - - - - 487335 "Glucose metabolism" - - - - - - 507286 "Glucose metabolism" - - - - - - 517300 "Glucose metabolism" - - - - - - 526185 "Glucose metabolism" - - - - - - 531075 "Glucose metabolism" - - - - - - 536448 "Glucose metabolism" - - - - - - 542152 "Glucose metabolism" - - - - - - 547510 "Glucose metabolism" - - - - - - 552108 "Glucose metabolism" - - - - - - 557701 "Glucose metabolism" - - - - - - 568310 "Glucose metabolism" - - - - - - 581512 "Glucose metabolism" - - - - - - 585744 "Glucose metabolism" - - - - - - 592406 "Glucose metabolism" - - - - - - 595290 "Glucose metabolism" - - - - - - 597266 "Glucose metabolism" - - - - - - 598075 "Glucose metabolism" - - - - - - 599603 "Glucose metabolism" - - - - - - 600549 "Glucose metabolism" - - - - - - 602408 "Glucose metabolism" - - - - - - 70326 "Glucose metabolism" - - - - - - GO:0006006 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. - GO:0006006 - cellular glucose metabolic process - glucose metabolic process - glucose metabolism - - - - - - - - - - - - - GO:0006007 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. - GO:0006007 - glucose breakdown - glucose catabolic process - glucose catabolism - glucose degradation - - - - - - - - - - - - - - GO:0006011 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. - GO:0006011 - UDP-glucose metabolic process - UDP-glucose metabolism - - - - - - - - - - - - GALACTMETAB-PWY - - - - - - GO:0006012 - - - - - - Galactose - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. - GO:0006012 - galactose metabolic process - galactose metabolism - - - - - - - - - - - - GO:0006013 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. - GO:0006013 - mannose metabolic process - mannose metabolism - - - - - - - - - - - - GO:0006014 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose moiety of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12. - D-ribose metabolic process - D-ribose metabolism - GO:0006014 - - - - - - - - - - - - GO:0006032 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues. - GO:0006032 - beta-1 4-linked N-acetylglucosamine catabolic process - beta-1 4-linked N-acetylglucosamine catabolism - chitin breakdown - chitin catabolic process - chitin catabolism - chitin degradation - - - - - - - - - - - - GO:0006040 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group. - GO:0006040 - amino sugar metabolic process - amino sugar metabolism - aminosaccharide metabolic process - aminosaccharide metabolism - - - - - - - - - - - - GO:0006044 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide moiety of a glycoprotein. - GO:0006044 - N-acetylglucosamine metabolic process - N-acetylglucosamine metabolism - - - - - - - - - - - - - - GO:0006047 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. - GO:0006047 - UDP-N-acetylglucosamine metabolic process - UDP-N-acetylglucosamine metabolism - - - - - - - - - - - - - GO:0006064 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glucuronate, any salt or ester of glucuronic acid. - GO:0006064 - glucuronate breakdown - glucuronate catabolic process - glucuronate catabolism - glucuronate degradation - - - - - - - - - - - - GLYCEROLMETAB-PWY - - - - - - GO:0006071 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.; - GO:0006071 - glycerol metabolic process - glycerol metabolism - - - - - - - - - - - - - GO:0006072 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. - GO:0006072 - glycerol-3-phosphate metabolic process - glycerol-3-phosphate metabolism - - - - - - - - - - - - GO:0006080 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a mannan backbone composed of D-mannose unites, substituted with D-glucose and/or D-galactose units. - GO:0006080 - substituted mannan metabolic process - substituted mannan metabolism - - - - - - - - - - - - - GO:0006081 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. - GO:0006081 - aldehyde metabolism - alkanal metabolic process - alkanal metabolism - cellular aldehyde metabolic process - - - - - - - - - - - - - GO:0006082 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage. - GO:0006082 - organic acid metabolic process - organic acid metabolism - - - - - - - - - - - - GO:0006089 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving lactate, the anion of lactic acid. - 2-hydroxypropanoate metabolic process - 2-hydroxypropanoate metabolism - GO:0006089 - alpha-hydroxypropionate metabolic process - alpha-hydroxypropionate metabolism - lactate metabolic process - lactate metabolism - - - - - - - - - - - - - 448497 "Gluconeogenesis" - - - - - - 469627 "Gluconeogenesis" - - - - - - 487346 "Gluconeogenesis" - - - - - - 507297 "Gluconeogenesis" - - - - - - 517311 "Gluconeogenesis" - - - - - - 526196 "Gluconeogenesis" - - - - - - 531083 "Gluconeogenesis" - - - - - - 536456 "Gluconeogenesis" - - - - - - 542160 "Gluconeogenesis" - - - - - - 547518 "Gluconeogenesis" - - - - - - 552111 "Gluconeogenesis" - - - - - - 557700 "Gluconeogenesis" - - - - - - 568318 "Gluconeogenesis" - - - - - - 581520 "Gluconeogenesis" - - - - - - 585747 "Gluconeogenesis" - - - - - - 592405 "Gluconeogenesis" - - - - - - 595293 "Gluconeogenesis" - - - - - - 597362 "Gluconeogenesis" - - - - - - 598161 "Gluconeogenesis" - - - - - - 599602 "Gluconeogenesis" - - - - - - 600548 "Gluconeogenesis" - - - - - - 602407 "Gluconeogenesis" - - - - - - 70263 "Gluconeogenesis" - - - - - - GLUCONEO-PWY - - - - - - GO:0006094 - - - - - - Gluconeogenesis - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. - GO:0006094 - gluconeogenesis - glucose biosynthesis - glucose biosynthetic process - - - - - - - - - - - - - 448565 "Glycolysis" - - - - - - 469694 "Glycolysis" - - - - - - 487406 "Glycolysis" - - - - - - 507358 "Glycolysis" - - - - - - 517369 "Glycolysis" - - - - - - 526246 "Glycolysis" - - - - - - 531123 "Glycolysis" - - - - - - 536495 "Glycolysis" - - - - - - 542205 "Glycolysis" - - - - - - 547559 "Glycolysis" - - - - - - 552161 "Glycolysis" - - - - - - 557749 "Glycolysis" - - - - - - 568366 "Glycolysis" - - - - - - 581568 "Glycolysis" - - - - - - 585775 "Glycolysis" - - - - - - 592464 "Glycolysis" - - - - - - 595331 "Glycolysis" - - - - - - 597291 "Glycolysis" - - - - - - 598100 "Glycolysis" - - - - - - 599643 "Glycolysis" - - - - - - 600580 "Glycolysis" - - - - - - 602448 "Glycolysis" - - - - - - 70171 "Glycolysis" - - - - - - ANAGLYCOLYSIS-PWY - - - - - - GLYCOLYSIS - - - - - - GO:0006096 - - - - - - GO:0019641 - - - - - - GO:0019642 - - - - - - Glycolysis - - - - - - P341-PWY - - - - - - PWY-1042 - - - - - - PWY-5484 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. - Embden-Meyerhof pathway - Embden-Meyerhof-Parnas pathway - GO:0006096 - anaerobic glycolysis - glycolysis - modifed Embden-Meyerhof pathway - - - - - - - - - - - - - GLYOXYLATE-BYPASS - - - - - - GO:0006097 - - - - - - Glyoxylate_cycle - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. - GO:0006097 - glyoxylate bypass - glyoxylate cycle - - - - - - - - - - - - - 448609 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 469908 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 487445 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 507402 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 517404 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 526279 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 531147 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 536518 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 542236 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 547586 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 552195 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 557780 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 568393 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 581595 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 585906 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 592491 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 595341 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 597314 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 598171 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 599662 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 600587 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 602475 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - 71336 "Pentose phosphate pathway (hexose monophosphate shunt)" - - - - - - GO:0006098 - - - - - - PENTOSE-P-PWY - - - - - - Pentose_phosphate_pathway - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. - GO:0006098 - hexose monophosphate pathway - pentose phosphate pathway - pentose phosphate shunt - pentose-phosphate pathway - pentose-phosphate shunt - - - - - - - - - - - - 448489 "Citric acid cycle (TCA cycle)" - - - - - - 469619 "Citric acid cycle (TCA cycle)" - - - - - - 487338 "Citric acid cycle (TCA cycle)" - - - - - - 507289 "Citric acid cycle (TCA cycle)" - - - - - - 517303 "Citric acid cycle (TCA cycle)" - - - - - - 526188 "Citric acid cycle (TCA cycle)" - - - - - - 531078 "Citric acid cycle (TCA cycle)" - - - - - - 536451 "Citric acid cycle (TCA cycle)" - - - - - - 542155 "Citric acid cycle (TCA cycle)" - - - - - - 547513 "Citric acid cycle (TCA cycle)" - - - - - - 552177 "Citric acid cycle (TCA cycle)" - - - - - - 557691 "Citric acid cycle (TCA cycle)" - - - - - - 568313 "Citric acid cycle (TCA cycle)" - - - - - - 581515 "Citric acid cycle (TCA cycle)" - - - - - - 585940 "Citric acid cycle (TCA cycle)" - - - - - - 592472 "Citric acid cycle (TCA cycle)" - - - - - - 595333 "Citric acid cycle (TCA cycle)" - - - - - - 597334 "Citric acid cycle (TCA cycle)" - - - - - - 598139 "Citric acid cycle (TCA cycle)" - - - - - - 599596 "Citric acid cycle (TCA cycle)" - - - - - - 600653 "Citric acid cycle (TCA cycle)" - - - - - - 602459 "Citric acid cycle (TCA cycle)" - - - - - - 71403 "Citric acid cycle (TCA cycle)" - - - - - - GO:0006099 - - - - - - P105-PWY - - - - - - P42-PWY - - - - - - TCA - - - - - - Tricarboxylic_acid_cycle - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. - GO:0006099 - Krebs cycle - TCA cycle - citric acid cycle - tricarboxylic acid cycle - - - - - - - - - - - - - GO:0006101 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. - GO:0006101 - citrate metabolic process - citrate metabolism - - - - - - - - - - - - GO:0006106 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. - GO:0006106 - fumarate metabolic process - fumarate metabolism - - - - - - - - - - - - GO:0006108 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. - GO:0006108 - malate metabolic process - malate metabolism - - - - - - - - - - - - GO:0006109 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates. - GO:0006109 - regulation of carbohydrate metabolic process - regulation of carbohydrate metabolism - - - - - - - - - - - - - 164651 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 437520 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 459631 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 478778 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 498544 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 513290 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - 522389 "Electron transfer from ubiquinol to cytochrome c of complex III" - - - - - - GO:0006122 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III. - GO:0006122 - complex III - mitochondrial electron transport, ubiquinol to cytochrome c - - - - - - - - - - - - - 163214 "Electron transfer from reduced cytochrome c to molecular oxygen" - - - - - - 437492 "Electron transfer from reduced cytochrome c to molecular oxygen" - - - - - - 459598 "Electron transfer from reduced cytochrome c to molecular oxygen" - - - - - - 478751 "Electron transfer from reduced cytochrome c to molecular oxygen" - - - - - - GO:0006123 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV. - GO:0006123 - complex IV - mitochondrial electron transport, cytochrome c to oxygen - - - - - - - - - - - - - - - GO:0006139 - - - - - - GO:0055134 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.; - GO:0006139 - cellular nucleobase nucleoside nucleotide and nucleic acid metabolism - cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process - nucleobase nucleoside nucleotide and nucleic acid metabolism - - - - - - - - - - - - 448519 "Purine metabolism" - - - - - - 469649 "Purine metabolism" - - - - - - 487361 "Purine metabolism" - - - - - - 507312 "Purine metabolism" - - - - - - 517327 "Purine metabolism" - - - - - - 526209 "Purine metabolism" - - - - - - 531095 "Purine metabolism" - - - - - - 536468 "Purine metabolism" - - - - - - 542172 "Purine metabolism" - - - - - - 547532 "Purine metabolism" - - - - - - 552123 "Purine metabolism" - - - - - - 557714 "Purine metabolism" - - - - - - 568330 "Purine metabolism" - - - - - - 581532 "Purine metabolism" - - - - - - 585750 "Purine metabolism" - - - - - - 592419 "Purine metabolism" - - - - - - 595303 "Purine metabolism" - - - - - - 597276 "Purine metabolism" - - - - - - 598082 "Purine metabolism" - - - - - - 599618 "Purine metabolism" - - - - - - 600558 "Purine metabolism" - - - - - - 602422 "Purine metabolism" - - - - - - 73847 "Purine metabolism" - - - - - - GO:0006144 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. - GO:0006144 - purine base metabolic process - purine base metabolism - purine metabolic process - purine metabolism - - - - - - - - - - - - GO:0006146 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. - GO:0006146 - adenine breakdown - adenine catabolic process - adenine catabolism - adenine degradation - - - - - - - - - - - - - GO:0006163 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0006163 - purine metabolic process - purine metabolism - purine nucleotide metabolic process - purine nucleotide metabolism - - - - - - - - - - - - - - DENOVOPURINE2-PWY - - - - - - GO:0006164 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0006164 - purine nucleotide anabolism - purine nucleotide biosynthesis - purine nucleotide biosynthetic process - purine nucleotide formation - purine nucleotide synthesis - - - - - - - - - - - - - GO:0006166 - - - - - - P121-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis. - GO:0006166 - purine ribonucleoside salvage - - - - - - - - - - - - GO:0006168 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. - GO:0006168 - adenine hypoxanthine and their nucleoside salvage - adenine salvage - adenine salvage pathway - - - - - - - - - - - - - GO:0006171 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). - 3' 5' cAMP biosynthesis - 3' 5' cAMP biosynthetic process - 3' 5'-cAMP biosynthesis - 3' 5'-cAMP biosynthetic process - GO:0006171 - adenosine 3' 5'-cyclophosphate biosynthesis - adenosine 3' 5'-cyclophosphate biosynthetic process - cAMP anabolism - cAMP biosynthesis - cAMP biosynthetic process - cAMP formation - cAMP synthesis - cyclic AMP biosynthesis - cyclic AMP biosynthetic process - - - - - - - - - - - - GO:0006177 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate. - GMP anabolism - GMP biosynthesis - GMP biosynthetic process - GMP formation - GMP synthesis - GO:0006177 - - - - - - - - - - - - GO:0006183 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate. - GO:0006183 - GTP anabolism - GTP biosynthesis - GTP biosynthetic process - GTP formation - GTP synthesis - - - - - - - - - - - - GO:0006188 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate. - GO:0006188 - IMP anabolism - IMP biosynthesis - IMP biosynthetic process - IMP formation - IMP synthesis - - - - - - - - - - - - - 448594 "De novo synthesis of IMP" - - - - - - 469723 "De novo synthesis of IMP" - - - - - - 487434 "De novo synthesis of IMP" - - - - - - 507391 "De novo synthesis of IMP" - - - - - - 517393 "De novo synthesis of IMP" - - - - - - 526268 "De novo synthesis of IMP" - - - - - - 531140 "De novo synthesis of IMP" - - - - - - 536512 "De novo synthesis of IMP" - - - - - - 542230 "De novo synthesis of IMP" - - - - - - 547580 "De novo synthesis of IMP" - - - - - - 552189 "De novo synthesis of IMP" - - - - - - 557774 "De novo synthesis of IMP" - - - - - - 568386 "De novo synthesis of IMP" - - - - - - 581588 "De novo synthesis of IMP" - - - - - - 592484 "De novo synthesis of IMP" - - - - - - 597305 "De novo synthesis of IMP" - - - - - - 598106 "De novo synthesis of IMP" - - - - - - 599655 "De novo synthesis of IMP" - - - - - - 600586 "De novo synthesis of IMP" - - - - - - 602469 "De novo synthesis of IMP" - - - - - - 73817 "De novo synthesis of IMP" - - - - - - GO:0006189 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.; - 'de novo' IMP anabolism - 'de novo' IMP biosynthesis - 'de novo' IMP biosynthetic process - 'de novo' IMP formation - 'de novo' IMP synthesis - 'de novo' purine biosynthesis - 'de novo' purine biosynthetic process - GO:0006189 - - - - - - - - - - - - 448477 "Pyrimidine metabolism" - - - - - - 469607 "Pyrimidine metabolism" - - - - - - 487326 "Pyrimidine metabolism" - - - - - - 507277 "Pyrimidine metabolism" - - - - - - 517297 "Pyrimidine metabolism" - - - - - - 526176 "Pyrimidine metabolism" - - - - - - 531066 "Pyrimidine metabolism" - - - - - - 536445 "Pyrimidine metabolism" - - - - - - 542143 "Pyrimidine metabolism" - - - - - - 547507 "Pyrimidine metabolism" - - - - - - 552099 "Pyrimidine metabolism" - - - - - - 557683 "Pyrimidine metabolism" - - - - - - 568301 "Pyrimidine metabolism" - - - - - - 581503 "Pyrimidine metabolism" - - - - - - 585768 "Pyrimidine metabolism" - - - - - - 592439 "Pyrimidine metabolism" - - - - - - 595287 "Pyrimidine metabolism" - - - - - - 597285 "Pyrimidine metabolism" - - - - - - 598091 "Pyrimidine metabolism" - - - - - - 599588 "Pyrimidine metabolism" - - - - - - 600546 "Pyrimidine metabolism" - - - - - - 602399 "Pyrimidine metabolism" - - - - - - 73848 "Pyrimidine metabolism" - - - - - - GO:0006206 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving pyrimidine bases, 1,3-diazine, organic nitrogenous bases. - GO:0006206 - pyrimidine base metabolic process - pyrimidine base metabolism - pyrimidine metabolic process - pyrimidine metabolism - - - - - - - - - - - - GO:0006207 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. - 'de novo' pyrimidine base anabolism - 'de novo' pyrimidine base biosynthesis - 'de novo' pyrimidine base biosynthetic process - 'de novo' pyrimidine base formation - 'de novo' pyrimidine base synthesis - GO:0006207 - - - - - - - - - - - - - GO:0006213 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving any pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). - GO:0006213 - pyrimidine metabolic process - pyrimidine metabolism - pyrimidine nucleoside metabolic process - pyrimidine nucleoside metabolism - - - - - - - - - - - - - GO:0006220 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0006220 - pyrimidine metabolic process - pyrimidine metabolism - pyrimidine nucleotide metabolic process - pyrimidine nucleotide metabolism - - - - - - - - - - - - - - GO:0006221 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0006221 - pyrimidine nucleotide anabolism - pyrimidine nucleotide biosynthesis - pyrimidine nucleotide biosynthetic process - pyrimidine nucleotide formation - pyrimidine nucleotide synthesis - - - - - - - - - - - - 448476 "De novo synthesis of UMP" - - - - - - 469606 "De novo synthesis of UMP" - - - - - - 487325 "De novo synthesis of UMP" - - - - - - 507276 "De novo synthesis of UMP" - - - - - - 517296 "De novo synthesis of UMP" - - - - - - 526175 "De novo synthesis of UMP" - - - - - - 531065 "De novo synthesis of UMP" - - - - - - 536444 "De novo synthesis of UMP" - - - - - - 542142 "De novo synthesis of UMP" - - - - - - 547506 "De novo synthesis of UMP" - - - - - - 552098 "De novo synthesis of UMP" - - - - - - 557682 "De novo synthesis of UMP" - - - - - - 568300 "De novo synthesis of UMP" - - - - - - 581502 "De novo synthesis of UMP" - - - - - - 592686 "De novo synthesis of UMP" - - - - - - 595286 "De novo synthesis of UMP" - - - - - - 597374 "De novo synthesis of UMP" - - - - - - 598163 "De novo synthesis of UMP" - - - - - - 599587 "De novo synthesis of UMP" - - - - - - 600545 "De novo synthesis of UMP" - - - - - - 602398 "De novo synthesis of UMP" - - - - - - 73581 "De novo synthesis of UMP" - - - - - - GO:0006222 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.; - GO:0006222 - UMP anabolism - UMP biosynthesis - UMP biosynthetic process - UMP formation - UMP synthesis - - - - - - - - - - - - GO:0006223 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis. - GO:0006223 - uracil salvage - - - - - - - - - - - - GO:0006226 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate). - GO:0006226 - dUMP anabolism - dUMP biosynthesis - dUMP biosynthetic process - dUMP formation - dUMP synthesis - - - - - - - - - - - - GO:0006228 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate. - GO:0006228 - UTP anabolism - UTP biosynthesis - UTP biosynthetic process - UTP formation - UTP synthesis - - - - - - - - - - - - GO:0006231 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate). - GO:0006231 - dTMP anabolism - dTMP biosynthesis - dTMP biosynthetic process - dTMP formation - dTMP synthesis - - - - - - - - - - - - GO:0006233 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of dTDP, deoxyribosylthymine diphosphate (2'-deoxyribosylthymine5'-diphosphate). - GO:0006233 - dTDP anabolism - dTDP biosynthesis - dTDP biosynthetic process - dTDP formation - dTDP synthesis - - - - - - - - - - - - GO:0006235 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of dTTP, deoxyribosylthymine triphosphate.; - GO:0006235 - dTTP anabolism - dTTP biosynthesis - dTTP biosynthetic process - dTTP formation - dTTP synthesis - - - - - - - - - - - - GO:0006241 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate. - CTP anabolism - CTP biosynthesis - CTP biosynthetic process - CTP formation - CTP synthesis - GO:0006241 - - - - - - - - - - - - - GO:0006259 - - - - - - GO:0055132 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. - DNA metabolism - GO:0006259 - cellular DNA metabolic process - cellular DNA metabolism - - - - - - - - - - - - - 176101 "Recruitment of Rad17-RFC complex to DNA" - - - - - - 176116 "Recruitment and activation of Chk1" - - - - - - 176175 "Stalling of DNA replication fork and RPA binding" - - - - - - 176187 "Activation of ATR in response to replication stress" - - - - - - 176250 "Binding of ATR-ATRIP to the RPA-ssDNA complex" - - - - - - 176264 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 176298 "Activation of claspin" - - - - - - 176318 "Loading of claspin onto DNA during replication origin firing" - - - - - - 429125 "Activation of claspin" - - - - - - 433202 "Binding of ATR-ATRIP to the RPA-ssDNA complex" - - - - - - 442012 "Loading of claspin onto DNA during replication origin firing" - - - - - - 446069 "Recruitment and activation of Chk1" - - - - - - 446123 "Recruitment of Rad17-RFC complex to DNA" - - - - - - 446153 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 447074 "Stalling of DNA replication fork and RPA binding" - - - - - - 448696 "Activation of ATR in response to replication stress" - - - - - - 463715 "Loading of claspin onto DNA during replication origin firing" - - - - - - 467450 "Recruitment of Rad17-RFC complex to DNA" - - - - - - 467477 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 468344 "Stalling of DNA replication fork and RPA binding" - - - - - - 470298 "Activation of ATR in response to replication stress" - - - - - - 472164 "Activation of claspin" - - - - - - 475516 "Binding of ATR-ATRIP to the RPA-ssDNA complex" - - - - - - 482185 "Loading of claspin onto DNA during replication origin firing" - - - - - - 485413 "Recruitment and activation of Chk1" - - - - - - 485440 "Recruitment of Rad17-RFC complex to DNA" - - - - - - 485461 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 486163 "Stalling of DNA replication fork and RPA binding" - - - - - - 487512 "Activation of ATR in response to replication stress" - - - - - - 490390 "Activation of claspin" - - - - - - 502397 "Loading of claspin onto DNA during replication origin firing" - - - - - - 505179 "Recruitment and activation of Chk1" - - - - - - 507473 "Activation of ATR in response to replication stress" - - - - - - 514771 "Loading of claspin onto DNA during replication origin firing" - - - - - - 516172 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 517816 "Activation of ATR in response to replication stress" - - - - - - 525168 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 526692 "Activation of ATR in response to replication stress" - - - - - - 531467 "Activation of ATR in response to replication stress" - - - - - - 536852 "Activation of ATR in response to replication stress" - - - - - - 541523 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 542605 "Activation of ATR in response to replication stress" - - - - - - 546964 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA" - - - - - - 547923 "Activation of ATR in response to replication stress" - - - - - - DNA_replication - - - - - - GO:0006260 - - - - - - GO:0055133 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular metabolic process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA. - DNA biosynthesis - DNA biosynthetic process - DNA synthesis - GO:0006260 - cellular DNA replication - - - - - - - - - - - - - GO:0006261 - - - - - - GO:0006262 - - - - - - GO:0006263 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process whereby new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. - DNA-dependent DNA replication - GO:0006261 - - - - - - - - - - - - - GO:0006265 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. - DNA topological change - DNA underwinding - GO:0006265 - - - - - - - - - - - - GO:0006268 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication. - DNA unwinding during replication - DNA unwinding factor - GO:0006268 - - - - - - - - - - - - - GO:0006269 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis. - DNA replication, synthesis of RNA primer - GO:0006269 - replication priming - - - - - - - - - - - - - 449288 "DNA replication initiation" - - - - - - 470407 "DNA replication initiation" - - - - - - 508054 "DNA replication initiation" - - - - - - 517908 "DNA replication initiation" - - - - - - 526736 "DNA replication initiation" - - - - - - 531500 "DNA replication initiation" - - - - - - 536891 "DNA replication initiation" - - - - - - 542639 "DNA replication initiation" - - - - - - 547956 "DNA replication initiation" - - - - - - 552528 "DNA replication initiation" - - - - - - 558150 "DNA replication initiation" - - - - - - 568780 "DNA replication initiation" - - - - - - 581983 "DNA replication initiation" - - - - - - 586033 "DNA replication initiation" - - - - - - 592889 "DNA replication initiation" - - - - - - 595590 "DNA replication initiation" - - - - - - 68952 "DNA replication initiation" - - - - - - GO:0006270 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. - DNA replication initiation - GO:0006270 - - - - - - - - - - - - - GO:0006274 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which DNA replication at a replication fork ceases; occurs when the replication fork reaches a specific termination site or when two replication forks meet. - DNA replication termination - GO:0006274 - - - - - - - - - - - - GO:0006275 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of DNA replication. - GO:0006275 - regulation of DNA replication - - - - - - - - - - - - - GO:0006276 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The maintenance of the integrity of extrachromosomal plasmid DNA; includes processes that ensure plasmids are retained in the daughter cells after cell division. - GO:0006276 - plasmid maintenance - - - - - - - - - - - - - 448579 "DNA Repair" - - - - - - 449225 "DNA Damage Reversal" - - - - - - 469708 "DNA Repair" - - - - - - 470344 "DNA Damage Reversal" - - - - - - 487420 "DNA Repair" - - - - - - 488024 "DNA Damage Reversal" - - - - - - 507375 "DNA Repair" - - - - - - 507985 "DNA Damage Reversal" - - - - - - 517374 "DNA Repair" - - - - - - 526250 "DNA Repair" - - - - - - 531127 "DNA Repair" - - - - - - 536499 "DNA Repair" - - - - - - 542209 "DNA Repair" - - - - - - 542599 "DNA Damage Reversal" - - - - - - 547563 "DNA Repair" - - - - - - 552173 "DNA Repair" - - - - - - 557757 "DNA Repair" - - - - - - 558121 "DNA Damage Reversal" - - - - - - 568370 "DNA Repair" - - - - - - 568747 "DNA Damage Reversal" - - - - - - 581572 "DNA Repair" - - - - - - 581951 "DNA Damage Reversal" - - - - - - 585783 "DNA Repair" - - - - - - 592468 "DNA Repair" - - - - - - 595411 "DNA Repair" - - - - - - 597351 "DNA Repair" - - - - - - 598160 "DNA Repair" - - - - - - 599712 "DNA Repair" - - - - - - 600616 "DNA Repair" - - - - - - 600694 "DNA Damage Reversal" - - - - - - 602518 "DNA Repair" - - - - - - 602608 "DNA Damage Reversal" - - - - - - 73894 "DNA Repair" - - - - - - 73942 "DNA Damage Reversal" - - - - - - DNA_repair - - - - - - GO:0006281 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. - DNA repair - GO:0006281 - - - - - - - - - - - - GO:0006282 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of DNA repair. - GO:0006282 - regulation of DNA repair - - - - - - - - - - - - - 448807 "Base Excision Repair" - - - - - - 469923 "Base Excision Repair" - - - - - - 487778 "Base Excision Repair" - - - - - - 507585 "Base Excision Repair" - - - - - - 517555 "Base Excision Repair" - - - - - - 526422 "Base Excision Repair" - - - - - - 531313 "Base Excision Repair" - - - - - - 536696 "Base Excision Repair" - - - - - - 542429 "Base Excision Repair" - - - - - - 547778 "Base Excision Repair" - - - - - - 552265 "Base Excision Repair" - - - - - - 557884 "Base Excision Repair" - - - - - - 568482 "Base Excision Repair" - - - - - - 581693 "Base Excision Repair" - - - - - - 585838 "Base Excision Repair" - - - - - - 592600 "Base Excision Repair" - - - - - - 595410 "Base Excision Repair" - - - - - - 597350 "Base Excision Repair" - - - - - - 598167 "Base Excision Repair" - - - - - - 599711 "Base Excision Repair" - - - - - - 600615 "Base Excision Repair" - - - - - - 602517 "Base Excision Repair" - - - - - - 73884 "Base Excision Repair" - - - - - - Base_excision_repair - - - - - - GO:0006284 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. - BER - GO:0006284 - base-excision repair - - - - - - - - - - - - - 448578 "Nucleotide Excision Repair" - - - - - - 469707 "Nucleotide Excision Repair" - - - - - - 487419 "Nucleotide Excision Repair" - - - - - - 507374 "Nucleotide Excision Repair" - - - - - - 517373 "Nucleotide Excision Repair" - - - - - - 526249 "Nucleotide Excision Repair" - - - - - - 531126 "Nucleotide Excision Repair" - - - - - - 536498 "Nucleotide Excision Repair" - - - - - - 542208 "Nucleotide Excision Repair" - - - - - - 547562 "Nucleotide Excision Repair" - - - - - - 552172 "Nucleotide Excision Repair" - - - - - - 557756 "Nucleotide Excision Repair" - - - - - - 568369 "Nucleotide Excision Repair" - - - - - - 581571 "Nucleotide Excision Repair" - - - - - - 585782 "Nucleotide Excision Repair" - - - - - - 592467 "Nucleotide Excision Repair" - - - - - - 595514 "Nucleotide Excision Repair" - - - - - - 597432 "Nucleotide Excision Repair" - - - - - - 598206 "Nucleotide Excision Repair" - - - - - - 600685 "Nucleotide Excision Repair" - - - - - - 602591 "Nucleotide Excision Repair" - - - - - - 73885 "Nucleotide Excision Repair" - - - - - - GO:0006289 - - - - - - GO:0045001 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). - GO:0006289 - NER - interstrand crosslink repair - intrastrand cross-link repair - nucleotide-excision repair - pyrimidine-dimer repair DNA damage excision - - - - - - - - - - - - - GO:0006290 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The repair of UV-induced T-T, C-T and C-C dimers.; - GO:0006290 - pyrimidine dimer repair - - - - - - - - - - - - - DNA_mismatch_repair - - - - - - GO:0006298 - - - - - - GO:0006300 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. - GO:0006298 - MMR - MutS MutL MutH pathway - long patch mismatch repair system - mismatch repair - mismatch repair MutL-like pathway - - - - - - - - - - - - - 448608 "Double-Strand Break Repair" - - - - - - 469737 "Double-Strand Break Repair" - - - - - - 487647 "Double-Strand Break Repair" - - - - - - 507607 "Double-Strand Break Repair" - - - - - - 517589 "Double-Strand Break Repair" - - - - - - 526443 "Double-Strand Break Repair" - - - - - - 531250 "Double-Strand Break Repair" - - - - - - 536624 "Double-Strand Break Repair" - - - - - - 542351 "Double-Strand Break Repair" - - - - - - 547695 "Double-Strand Break Repair" - - - - - - 552289 "Double-Strand Break Repair" - - - - - - 557905 "Double-Strand Break Repair" - - - - - - 568506 "Double-Strand Break Repair" - - - - - - 581717 "Double-Strand Break Repair" - - - - - - 585851 "Double-Strand Break Repair" - - - - - - 592613 "Double-Strand Break Repair" - - - - - - 595426 "Double-Strand Break Repair" - - - - - - 597361 "Double-Strand Break Repair" - - - - - - 598159 "Double-Strand Break Repair" - - - - - - 600682 "Double-Strand Break Repair" - - - - - - 602588 "Double-Strand Break Repair" - - - - - - 73890 "Double-Strand Break Repair" - - - - - - GO:0006302 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. - GO:0006302 - double-strand break repair - - - - - - - - - - - - - 448826 "Nonhomologous End-joining (NHEJ)" - - - - - - 469942 "Nonhomologous End-joining (NHEJ)" - - - - - - 487648 "Nonhomologous End-joining (NHEJ)" - - - - - - 507606 "Nonhomologous End-joining (NHEJ)" - - - - - - 517590 "Nonhomologous End-joining (NHEJ)" - - - - - - 526442 "Nonhomologous End-joining (NHEJ)" - - - - - - 531249 "Nonhomologous End-joining (NHEJ)" - - - - - - 536623 "Nonhomologous End-joining (NHEJ)" - - - - - - 542350 "Nonhomologous End-joining (NHEJ)" - - - - - - 547694 "Nonhomologous End-joining (NHEJ)" - - - - - - 568507 "Nonhomologous End-joining (NHEJ)" - - - - - - 581718 "Nonhomologous End-joining (NHEJ)" - - - - - - 592612 "Nonhomologous End-joining (NHEJ)" - - - - - - 73889 "Nonhomologous End-joining (NHEJ)" - - - - - - GO:0006303 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. - GO:0006303 - NHEJ - double-strand break repair via nonhomologous end joining - - - - - - - - - - - - - GO:0006304 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties. - DNA modification - GO:0006304 - - - - - - - - - - - - DNA_methylation - - - - - - GO:0006306 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. - DNA methylation - GO:0006306 - - - - - - - - - - - - - GO:0006308 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. - DNA breakdown - DNA catabolism - DNA degradation - GO:0006308 - cellular DNA catabolic process - - - - - - - - - - - - - GO:0006310 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. - DNA recombination - GO:0006310 - - - - - - - - - - - - - GO:0006313 - - - - - - GO:0006317 - - - - - - GO:0006318 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in a type of transpositional recombination which occurs via a DNA intermediate. - Class II transposition - DNA transposition - GO:0006313 - P-element excision - P-element transposition - Tc1 mariner transposition - Tc3 transposition - cut-and-paste transposition - transposition, DNA-mediated - - - - - - - - - - - - - GO:0006314 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Lateral transfer of an intron to a homologous allele that lacks the intron, mediated by a site-specific endonuclease encoded within the mobile intron. - GO:0006314 - intron homing - - - - - - - - - - - - GO:0006323 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process by which DNA and associated proteins are formed into a compact, orderly structure. - DNA organisation - DNA organization - DNA packaging - GO:0006323 - - - - - - - - - - - - - GO:0006342 - - - - - - GO:0016440 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. - GO:0006342 - TGS - chromatin silencing - chromatin-mediated maintenance of transcriptional inactivation - chromatin-mediated silencing - heterochromatic silencing - transcriptional gene silencing - - - - - - - - - - - - - 448636 "Transcription" - - - - - - 469764 "Transcription" - - - - - - 487521 "Transcription" - - - - - - 507482 "Transcription" - - - - - - 517466 "Transcription" - - - - - - 526339 "Transcription" - - - - - - 531172 "Transcription" - - - - - - 536547 "Transcription" - - - - - - 542268 "Transcription" - - - - - - 547614 "Transcription" - - - - - - 552218 "Transcription" - - - - - - 557808 "Transcription" - - - - - - 568425 "Transcription" - - - - - - 581627 "Transcription" - - - - - - 585958 "Transcription" - - - - - - 592524 "Transcription" - - - - - - 595359 "Transcription" - - - - - - 74159 "Transcription" - - - - - - GO:0006350 - - - - - - Transcription_(genetics) - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular synthesis of either RNA on a template of DNA or DNA on a template of RNA. - GO:0006350 - cellular transcription - - - - - - - - - - - - - GO:0006351 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular synthesis of RNA on a template of DNA. - GO:0006351 - cellular transcription, DNA-dependent - - - - - - - - - - - - - GO:0006352 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.; - GO:0006352 - RNA polymerase complex assembly at promoter - transcription initiation - - - - - - - - - - - - GO:0006353 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. - GO:0006353 - transcription termination - transcriptional complex disassembly - - - - - - - - - - - - - GO:0006355 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription. - GO:0006355 - regulation of cellular transcription, DNA-dependent - transcriptional control - - - - - - - - - - - - GO:0006364 - - - - - - GO:0006365 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. - 35S primary transcript processing - GO:0006364 - rRNA processing - - - - - - - - - - - - - GO:0006394 - - - - - - GO:0006396 - - - - - - Post-transcriptional_modification - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. - GO:0006396 - RNA processing - - - - - - - - - - - - - GO:0006397 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. - GO:0006397 - mRNA maturation - mRNA processing - - - - - - - - - - - - - - GO:0006400 - - - - - - GO:0016549 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. - GO:0006400 - tRNA editing - tRNA modification - - - - - - - - - - - - - GO:0006401 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. - GO:0006401 - RNA breakdown - RNA catabolic process - RNA catabolism - RNA degradation - - - - - - - - - - - - - GO:0006402 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.; - GO:0006402 - mRNA breakdown - mRNA catabolic process - mRNA catabolism - mRNA decay - mRNA degradation - - - - - - - - - - - - - 448800 "Translation" - - - - - - 469916 "Translation" - - - - - - 487622 "Translation" - - - - - - 507577 "Translation" - - - - - - 517550 "Translation" - - - - - - 526417 "Translation" - - - - - - 531240 "Translation" - - - - - - 536611 "Translation" - - - - - - 542335 "Translation" - - - - - - 547676 "Translation" - - - - - - 552260 "Translation" - - - - - - 557879 "Translation" - - - - - - 568477 "Translation" - - - - - - 581688 "Translation" - - - - - - 585834 "Translation" - - - - - - 592595 "Translation" - - - - - - 595406 "Translation" - - - - - - 597395 "Translation" - - - - - - 598177 "Translation" - - - - - - 599776 "Translation" - - - - - - 72766 "Translation" - - - - - - GO:0006412 - - - - - - GO:0006416 - - - - - - GO:0006453 - - - - - - GO:0043037 - - - - - - Translation_(genetics) - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. - GO:0006412 - protein anabolism - protein biosynthesis - protein formation - protein synthesis - protein translation - translation - - - - - - - - - - - - - GO:0006413 - - - - - - GO:0006440 - - - - - - GO:0006454 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA. - GO:0006413 - biopolymerisation - biopolymerization - protein synthesis initiation - translation initiation - translational initiation - - - - - - - - - - - - 156842 "Eukaryotic Translation Elongation" - - - - - - 448799 "Eukaryotic Translation Elongation" - - - - - - 469915 "Eukaryotic Translation Elongation" - - - - - - 487621 "Eukaryotic Translation Elongation" - - - - - - 507576 "Eukaryotic Translation Elongation" - - - - - - 517549 "Eukaryotic Translation Elongation" - - - - - - 526416 "Eukaryotic Translation Elongation" - - - - - - 531239 "Eukaryotic Translation Elongation" - - - - - - 536610 "Eukaryotic Translation Elongation" - - - - - - 542334 "Eukaryotic Translation Elongation" - - - - - - 547675 "Eukaryotic Translation Elongation" - - - - - - 552259 "Eukaryotic Translation Elongation" - - - - - - 557878 "Eukaryotic Translation Elongation" - - - - - - 568476 "Eukaryotic Translation Elongation" - - - - - - 581687 "Eukaryotic Translation Elongation" - - - - - - 585833 "Eukaryotic Translation Elongation" - - - - - - 592594 "Eukaryotic Translation Elongation" - - - - - - 595405 "Eukaryotic Translation Elongation" - - - - - - 597399 "Eukaryotic Translation Elongation" - - - - - - 598179 "Eukaryotic Translation Elongation" - - - - - - 599775 "Eukaryotic Translation Elongation" - - - - - - GO:0006414 - - - - - - GO:0006442 - - - - - - GO:0006455 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. - GO:0006414 - protein synthesis elongation - translation elongation - translational elongation - - - - - - - - - - - - 141667 "GTP bound eRF3:eRF1 complex binds the peptidyl-tRNA:mRNA:Ribosome complex" - - - - - - 141671 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 141673 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 141687 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 141691 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 141696 "Eukaryotic Translation Termination" - - - - - - 141698 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 440258 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 440261 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 445575 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 449136 "Eukaryotic Translation Termination" - - - - - - 462009 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 462012 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 466915 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 470249 "Eukaryotic Translation Termination" - - - - - - 480779 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 480782 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 485039 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 487929 "Eukaryotic Translation Termination" - - - - - - 500822 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 500825 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 504825 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 507900 "Eukaryotic Translation Termination" - - - - - - 514179 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 514182 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 515979 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 517790 "Eukaryotic Translation Termination" - - - - - - 523207 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 523210 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 525025 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 526621 "Eukaryotic Translation Termination" - - - - - - 529589 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 529592 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 530370 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 531419 "Eukaryotic Translation Termination" - - - - - - 536791 "Eukaryotic Translation Termination" - - - - - - 540424 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 540427 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 541416 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 542548 "Eukaryotic Translation Termination" - - - - - - 546072 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 546075 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 546870 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 547875 "Eukaryotic Translation Termination" - - - - - - 550841 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 550844 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 551526 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 552449 "Eukaryotic Translation Termination" - - - - - - 556013 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 556016 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 556994 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 558060 "Eukaryotic Translation Termination" - - - - - - 565515 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 565518 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 567021 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 568706 "Eukaryotic Translation Termination" - - - - - - 578116 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 578119 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 579990 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 581909 "Eukaryotic Translation Termination" - - - - - - 584594 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 584597 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 585208 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 585947 "Eukaryotic Translation Termination" - - - - - - 590318 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 590321 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 591596 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 592804 "Eukaryotic Translation Termination" - - - - - - 594484 "GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex" - - - - - - 594487 "GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex" - - - - - - 594883 "Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex" - - - - - - 595531 "Eukaryotic Translation Termination" - - - - - - 72764 "Eukaryotic Translation Termination" - - - - - - GO:0006415 - - - - - - GO:0006443 - - - - - - GO:0006456 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).; - GO:0006415 - protein synthesis termination - translation termination - translational complex disassembly - translational termination - - - - - - - - - - - - GO:0006417 - - - - - - GO:0006445 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.; - GO:0006417 - regulation of protein anabolism - regulation of protein biosynthesis - regulation of protein formation - regulation of protein synthesis - regulation of translation - - - - - - - - - - - - - 379716 "Cytosolic tRNA aminoacylation" - - - - - - 379724 "tRNA Aminoacylation" - - - - - - 379726 "Mitochondrial tRNA aminoacylation" - - - - - - 448783 "Cytosolic tRNA aminoacylation" - - - - - - 448784 "tRNA Aminoacylation" - - - - - - 448785 "Mitochondrial tRNA aminoacylation" - - - - - - 469898 "Cytosolic tRNA aminoacylation" - - - - - - 469899 "tRNA Aminoacylation" - - - - - - 469900 "Mitochondrial tRNA aminoacylation" - - - - - - 487605 "Cytosolic tRNA aminoacylation" - - - - - - 487606 "tRNA Aminoacylation" - - - - - - 487607 "Mitochondrial tRNA aminoacylation" - - - - - - 507560 "Cytosolic tRNA aminoacylation" - - - - - - 507561 "tRNA Aminoacylation" - - - - - - 507562 "Mitochondrial tRNA aminoacylation" - - - - - - 517538 "Cytosolic tRNA aminoacylation" - - - - - - 517539 "tRNA Aminoacylation" - - - - - - 517540 "Mitochondrial tRNA aminoacylation" - - - - - - 526405 "Cytosolic tRNA aminoacylation" - - - - - - 526406 "tRNA Aminoacylation" - - - - - - 526407 "Mitochondrial tRNA aminoacylation" - - - - - - 531225 "Cytosolic tRNA aminoacylation" - - - - - - 531226 "tRNA Aminoacylation" - - - - - - 531228 "Mitochondrial tRNA aminoacylation" - - - - - - 536595 "Cytosolic tRNA aminoacylation" - - - - - - 536596 "tRNA Aminoacylation" - - - - - - 536597 "Mitochondrial tRNA aminoacylation" - - - - - - 542321 "Cytosolic tRNA aminoacylation" - - - - - - 542322 "tRNA Aminoacylation" - - - - - - 542323 "Mitochondrial tRNA aminoacylation" - - - - - - 547661 "Cytosolic tRNA aminoacylation" - - - - - - 547662 "tRNA Aminoacylation" - - - - - - 547663 "Mitochondrial tRNA aminoacylation" - - - - - - 552246 "Cytosolic tRNA aminoacylation" - - - - - - 552247 "tRNA Aminoacylation" - - - - - - 552248 "Mitochondrial tRNA aminoacylation" - - - - - - 557865 "Cytosolic tRNA aminoacylation" - - - - - - 557866 "tRNA Aminoacylation" - - - - - - 557867 "Mitochondrial tRNA aminoacylation" - - - - - - 568463 "Cytosolic tRNA aminoacylation" - - - - - - 568464 "tRNA Aminoacylation" - - - - - - 568465 "Mitochondrial tRNA aminoacylation" - - - - - - 581674 "Cytosolic tRNA aminoacylation" - - - - - - 581675 "tRNA Aminoacylation" - - - - - - 581676 "Mitochondrial tRNA aminoacylation" - - - - - - 585826 "Cytosolic tRNA aminoacylation" - - - - - - 585827 "tRNA Aminoacylation" - - - - - - 585829 "Mitochondrial tRNA aminoacylation" - - - - - - 592583 "Cytosolic tRNA aminoacylation" - - - - - - 592584 "tRNA Aminoacylation" - - - - - - 592585 "Mitochondrial tRNA aminoacylation" - - - - - - 595396 "Cytosolic tRNA aminoacylation" - - - - - - 595397 "tRNA Aminoacylation" - - - - - - 595398 "Mitochondrial tRNA aminoacylation" - - - - - - 597340 "Cytosolic tRNA aminoacylation" - - - - - - 597341 "tRNA Aminoacylation" - - - - - - 597343 "Mitochondrial tRNA aminoacylation" - - - - - - 598146 "Cytosolic tRNA aminoacylation" - - - - - - 598147 "tRNA Aminoacylation" - - - - - - 598149 "Mitochondrial tRNA aminoacylation" - - - - - - 599699 "Cytosolic tRNA aminoacylation" - - - - - - 599700 "tRNA Aminoacylation" - - - - - - 599702 "Mitochondrial tRNA aminoacylation" - - - - - - 600606 "Cytosolic tRNA aminoacylation" - - - - - - 600607 "tRNA Aminoacylation" - - - - - - 600609 "Mitochondrial tRNA aminoacylation" - - - - - - 602508 "Cytosolic tRNA aminoacylation" - - - - - - 602509 "tRNA Aminoacylation" - - - - - - 602511 "Mitochondrial tRNA aminoacylation" - - - - - - GO:0006418 - - - - - - TRNA-CHARGING-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. - GO:0006418 - tRNA aminoacylation for protein translation - tRNA charging - - - - - - - - - - - - - GO:0006419 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006419 - alanyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006420 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006420 - arginyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006421 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.; - GO:0006421 - asparaginyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006422 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006422 - aspartyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006423 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006423 - cysteinyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006424 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA. - GO:0006424 - glutamyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006426 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006426 - glycyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006427 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling histidine to histidyl-tRNA, catalyzed by histidyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006427 - histidyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006428 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.; - GO:0006428 - isoleucyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006429 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006429 - leucyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006430 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006430 - lysyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006431 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006431 - methionyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006432 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006432 - phenylalanyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006433 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006433 - prolyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006434 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006434 - seryl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006435 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006435 - threonyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006436 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006436 - tryptophanyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006437 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. - GO:0006437 - tyrosyl-tRNA aminoacylation - - - - - - - - - - - - - GO:0006438 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.; - GO:0006438 - valyl-tRNA aminoacylation - - - - - - - - - - - - GO:0000029 - - - - - - GO:0006450 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the ability of the translational apparatus to interpret the genetic code. - GO:0006450 - regulation of translational accuracy - regulation of translational fidelity - - - - - - - - - - - - - 389960 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 389967 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 390466 "Chaperonin-mediated protein folding" - - - - - - 392033 "Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding" - - - - - - 448640 "Chaperonin-mediated protein folding" - - - - - - 448770 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 469768 "Chaperonin-mediated protein folding" - - - - - - 469885 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 487587 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 487589 "Chaperonin-mediated protein folding" - - - - - - 507422 "Chaperonin-mediated protein folding" - - - - - - 507545 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 517425 "Chaperonin-mediated protein folding" - - - - - - 517525 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 526299 "Chaperonin-mediated protein folding" - - - - - - 526394 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 531205 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 531207 "Chaperonin-mediated protein folding" - - - - - - 536535 "Chaperonin-mediated protein folding" - - - - - - 536580 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 542256 "Chaperonin-mediated protein folding" - - - - - - 542306 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 547600 "Chaperonin-mediated protein folding" - - - - - - 547647 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 552207 "Chaperonin-mediated protein folding" - - - - - - 552239 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 557798 "Chaperonin-mediated protein folding" - - - - - - 557852 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 568411 "Chaperonin-mediated protein folding" - - - - - - 568446 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 581613 "Chaperonin-mediated protein folding" - - - - - - 581659 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 585812 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 585814 "Chaperonin-mediated protein folding" - - - - - - 592510 "Chaperonin-mediated protein folding" - - - - - - 592570 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - 595349 "Chaperonin-mediated protein folding" - - - - - - 595388 "Formation of tubulin folding intermediates by CCT/TriC" - - - - - - GO:0006457 - - - - - - GO:0007022 - - - - - - GO:0007024 - - - - - - GO:0007025 - - - - - - Protein_folding - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. - GO:0006457 - alpha-tubulin folding - beta-tubulin folding - chaperone - chaperonin ATPase - chaperonin-mediated tubulin folding - co-chaperone - co-chaperonin - glycoprotein-specific chaperone - non-chaperonin molecular chaperone ATPase - protein complex assembly multichaperone pathway - protein folding - - - - - - - - - - - - GO:0006461 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The aggregation, arrangement and bonding together of a set of components to form a protein complex. - GO:0006461 - chaperone - protein complex assembly - protein complex biosynthesis - protein complex formation - - - - - - - - - - - - - 163841 "Post-translational protein modification" - - - - - - 448468 "Post-translational protein modification" - - - - - - 469598 "Post-translational protein modification" - - - - - - 487317 "Post-translational protein modification" - - - - - - 507268 "Post-translational protein modification" - - - - - - 517285 "Post-translational protein modification" - - - - - - 526163 "Post-translational protein modification" - - - - - - 531060 "Post-translational protein modification" - - - - - - 536442 "Post-translational protein modification" - - - - - - 542137 "Post-translational protein modification" - - - - - - 547504 "Post-translational protein modification" - - - - - - 552404 "Post-translational protein modification" - - - - - - 557675 "Post-translational protein modification" - - - - - - 568295 "Post-translational protein modification" - - - - - - 581497 "Post-translational protein modification" - - - - - - 585741 "Post-translational protein modification" - - - - - - 592394 "Post-translational protein modification" - - - - - - 595284 "Post-translational protein modification" - - - - - - 597401 "Post-translational protein modification" - - - - - - 598181 "Post-translational protein modification" - - - - - - GO:0006464 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). - GO:0006464 - process resulting in protein modification - protein modification process - protein tagging - - - - - - - - - - - - - - GO:0006465 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. - GO:0006465 - leader peptide processing - signal peptide processing - - - - - - - - - - - - - GO:0006468 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of introducing a phosphate group on to a protein. - GO:0006468 - protein amino acid phosphorylation - - - - - - - - - - - - - GO:0006470 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of removing one or more phosphoric residues from a protein. - GO:0006470 - protein amino acid dephosphorylation - - - - - - - - - - - - GO:0006474 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The acetylation of the N-terminal amino acid of proteins. - GO:0006474 - N-terminal protein amino acid acetylation - - - - - - - - - - - - GO:0006476 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.; - GO:0006476 - protein amino acid deacetylation - - - - - - - - - - - - GO:0006479 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom. - GO:0006479 - protein amino acid methylation - - - - - - - - - - - - - GO:0006481 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The methylation of the C-terminal amino acid of a protein. - C-terminal protein amino acid methylation - GO:0006481 - - - - - - - - - - - - AA0153 - - - - - - AA0154 - - - - - - AA0155 - - - - - - AA0157 - - - - - - AA0212 - - - - - - GO:0006493 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein amino acid glycosylation process in which a sugar unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. - GO:0006493 - protein amino acid O-linked glycosylation - - - - - - - - - - - - - 159782 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - 449259 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - 470378 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - 488060 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - 508017 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - 517878 "Removal of aminoterminal propeptides from gamma-carboxylated proteins" - - - - - - GO:0006508 - - - - - - Proteolysis - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds. - ATP-dependent proteolysis - GO:0006508 - peptidolysis - proteolysis - - - - - - - - - - - - - GO:0006518 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. - GO:0006518 - peptide metabolic process - peptide metabolism - - - - - - - - - - - - - GO:0006520 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents. - GO:0006520 - cellular amino acid metabolic process - cellular amino acid metabolism - - - - - - - - - - - - 448782 "Alanine metabolism" - - - - - - 469897 "Alanine metabolism" - - - - - - 487604 "Alanine metabolism" - - - - - - 507559 "Alanine metabolism" - - - - - - 517537 "Alanine metabolism" - - - - - - 526404 "Alanine metabolism" - - - - - - 531224 "Alanine metabolism" - - - - - - 536594 "Alanine metabolism" - - - - - - 542320 "Alanine metabolism" - - - - - - 547660 "Alanine metabolism" - - - - - - 552245 "Alanine metabolism" - - - - - - 557864 "Alanine metabolism" - - - - - - 568462 "Alanine metabolism" - - - - - - 581673 "Alanine metabolism" - - - - - - 585824 "Alanine metabolism" - - - - - - 592582 "Alanine metabolism" - - - - - - 598145 "Alanine metabolism" - - - - - - 70525 "Alanine metabolism" - - - - - - GO:0006522 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving alanine, 2-aminopropanoic acid. - GO:0006522 - alanine metabolic process - alanine metabolism - - - - - - - - - - - - - GO:0006523 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of alanine, 2-aminopropanoic acid. - GO:0006523 - alanine anabolism - alanine biosynthesis - alanine biosynthetic process - alanine formation - alanine synthesis - - - - - - - - - - - - Arginine - - - - - - GO:0006525 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. - GO:0006525 - arginine metabolic process - arginine metabolism - - - - - - - - - - - - - ARGININE-SYN4-PWY - - - - - - ARGSYN-PWY - - - - - - ARGSYNBSUB-PWY - - - - - - GO:0006526 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.; - GO:0006526 - arginine anabolism - arginine biosynthesis - arginine biosynthetic process - arginine formation - arginine synthesis - - - - - - - - - - - - ASPARAGINESYN-PWY - - - - - - GO:0006528 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid. - GO:0006528 - asparagine metabolic process - asparagine metabolism - - - - - - - - - - - - - GO:0006529 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. - GO:0006529 - asparagine anabolism - asparagine biosynthesis - asparagine biosynthetic process - asparagine formation - asparagine synthesis - - - - - - - - - - - - GO:0006531 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid. - GO:0006531 - aspartate metabolic process - aspartate metabolism - - - - - - - - - - - - - Cysteine_metabolism - - - - - - GO:0006534 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid.; - GO:0006534 - cysteine metabolic process - cysteine metabolism - - - - - - - - - - - - - - CYSTSYN-PWY - - - - - - GO:0006535 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. - GO:0006535 - cysteine anabolism from serine - cysteine biosynthetic process from serine - cysteine formation from serine - cysteine synthesis from serine - - - - - - - - - - - - GO:0006537 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid. - GO:0006537 - glutamate anabolism - glutamate biosynthesis - glutamate biosynthesis using glutamate dehydrogenase - glutamate biosynthesis using glutamate synthase - glutamate biosynthetic process - glutamate biosynthetic process using glutamate dehydrogenase - glutamate biosynthetic process using glutamate synthase - glutamate formation - glutamate synthesis - glutamic acid biosynthesis - glutamic acid biosynthetic process - - - - - - - - - - - - GO:0006541 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. - GO:0006541 - glutamine metabolic process - glutamine metabolism - - - - - - - - - - - - - GLNSYN-PWY - - - - - - GO:0006542 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid. - GO:0006542 - glutamine anabolism - glutamine biosynthesis - glutamine biosynthetic process - glutamine formation - glutamine synthesis - - - - - - - - - - - - - GO:0006543 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid. - GO:0006543 - glutamine breakdown - glutamine catabolic process - glutamine catabolism - glutamine degradation - - - - - - - - - - - - - GO:0006544 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glycine, aminoethanoic acid. - GO:0006544 - glycine metabolic process - glycine metabolism - - - - - - - - - - - - - GLYCINE-SYN2-PWY - - - - - - GO:0006545 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid. - GO:0006545 - glycine anabolism - glycine biosynthesis - glycine biosynthetic process - glycine formation - glycine synthesis - - - - - - - - - - - - - GO:0006546 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. - GO:0006546 - glycine breakdown - glycine catabolic process - glycine catabolism - glycine degradation - - - - - - - - - - - - GO:0006547 - - - - - - Histidine - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. - GO:0006547 - histidine metabolic process - histidine metabolism - - - - - - - - - - - - - 448592 "Histidine catabolism" - - - - - - 469721 "Histidine catabolism" - - - - - - 487432 "Histidine catabolism" - - - - - - 507389 "Histidine catabolism" - - - - - - 526266 "Histidine catabolism" - - - - - - 542549 "Histidine catabolism" - - - - - - 568707 "Histidine catabolism" - - - - - - 581910 "Histidine catabolism" - - - - - - 585948 "Histidine catabolism" - - - - - - 592482 "Histidine catabolism" - - - - - - 70921 "Histidine catabolism" - - - - - - GO:0006548 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. - GO:0006548 - histidine breakdown - histidine catabolic process - histidine catabolism - histidine degradation - - - - - - - - - - - - GO:0006555 - - - - - - met - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. - GO:0006555 - methionine and threonine metabolic process - methionine and threonine metabolism - methionine metabolic process - methionine metabolism - - - - - - - - - - - - GO:0006557 - - - - - - GO:0006745 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt. - GO:0006557 - S-adenosylmethioninamine anabolism - S-adenosylmethioninamine biosynthesis - S-adenosylmethioninamine biosynthetic process - S-adenosylmethioninamine formation - S-adenosylmethioninamine synthesis - - - - - - - - - - - - GO:0006560 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. - GO:0006560 - proline metabolic process - proline metabolism - - - - - - - - - - - - - 449173 "Proline synthesis" - - - - - - 470286 "Proline synthesis" - - - - - - 487962 "Proline synthesis" - - - - - - 507936 "Proline synthesis" - - - - - - 517808 "Proline synthesis" - - - - - - 526640 "Proline synthesis" - - - - - - 531438 "Proline synthesis" - - - - - - 536811 "Proline synthesis" - - - - - - 542570 "Proline synthesis" - - - - - - 547890 "Proline synthesis" - - - - - - 552469 "Proline synthesis" - - - - - - 558077 "Proline synthesis" - - - - - - 568725 "Proline synthesis" - - - - - - 581928 "Proline synthesis" - - - - - - 592820 "Proline synthesis" - - - - - - 595543 "Proline synthesis" - - - - - - 597426 "Proline synthesis" - - - - - - 598209 "Proline synthesis" - - - - - - 599765 "Proline synthesis" - - - - - - 600672 "Proline synthesis" - - - - - - 602580 "Proline synthesis" - - - - - - 70665 "Proline synthesis" - - - - - - GO:0006561 - - - - - - PROSYN-PWY - - - - - - PWY-3341 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. - GO:0006561 - proline anabolism - proline biosynthesis - proline biosynthetic process - proline formation - proline synthesis - - - - - - - - - - - - - 449128 "Proline catabolism" - - - - - - 470239 "Proline catabolism" - - - - - - 487922 "Proline catabolism" - - - - - - 507893 "Proline catabolism" - - - - - - 517785 "Proline catabolism" - - - - - - 526615 "Proline catabolism" - - - - - - 531415 "Proline catabolism" - - - - - - 536786 "Proline catabolism" - - - - - - 542543 "Proline catabolism" - - - - - - 547871 "Proline catabolism" - - - - - - 552444 "Proline catabolism" - - - - - - 558056 "Proline catabolism" - - - - - - 568701 "Proline catabolism" - - - - - - 581904 "Proline catabolism" - - - - - - 592802 "Proline catabolism" - - - - - - 595530 "Proline catabolism" - - - - - - 597413 "Proline catabolism" - - - - - - 598182 "Proline catabolism" - - - - - - 599754 "Proline catabolism" - - - - - - 600655 "Proline catabolism" - - - - - - 602564 "Proline catabolism" - - - - - - 70688 "Proline catabolism" - - - - - - GO:0006562 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. - GO:0006562 - proline breakdown - proline catabolic process - proline catabolism - proline degradation - - - - - - - - - - - - - GO:0006563 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. - GO:0006563 - L-serine metabolic process - L-serine metabolism - - - - - - - - - - - - - GO:0006564 - - - - - - SERSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. - GO:0006564 - L-serine anabolism - L-serine biosynthesis - L-serine biosynthetic process - L-serine formation - L-serine synthesis - - - - - - - - - - - - GO:0006566 - - - - - - met - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. - GO:0006566 - methionine and threonine metabolic process - methionine and threonine metabolism - threonine metabolic process - threonine metabolism - - - - - - - - - - - - - GO:0006567 - - - - - - THREOCAT-PWY - - - - - - met - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. - GO:0006567 - threonine breakdown - threonine catabolic process - threonine catabolism - threonine degradation - - - - - - - - - - - - GO:0006568 - - - - - - Tryptophan - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.; - GO:0006568 - tryptophan metabolic process - tryptophan metabolism - - - - - - - - - - - - GO:0006571 - - - - - - PWY-3461 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. - GO:0006571 - tyrosine anabolism - tyrosine biosynthesis - tyrosine biosynthetic process - tyrosine formation - tyrosine synthesis - - - - - - - - - - - - - GO:0006573 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid. - GO:0006573 - valine metabolic process - valine metabolism - - - - - - - - - - - - GO:0006578 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid. - GO:0006578 - betaine anabolism - betaine biosynthesis - betaine biosynthetic process - betaine formation - betaine synthesis - - - - - - - - - - - - 351200 "Interconversion of polyamines" - - - - - - 449201 "Interconversion of polyamines" - - - - - - 470322 "Interconversion of polyamines" - - - - - - 487999 "Interconversion of polyamines" - - - - - - 508048 "Interconversion of polyamines" - - - - - - 517901 "Interconversion of polyamines" - - - - - - 526727 "Interconversion of polyamines" - - - - - - 531499 "Interconversion of polyamines" - - - - - - 536890 "Interconversion of polyamines" - - - - - - 542638 "Interconversion of polyamines" - - - - - - 547955 "Interconversion of polyamines" - - - - - - 568777 "Interconversion of polyamines" - - - - - - 581980 "Interconversion of polyamines" - - - - - - 592888 "Interconversion of polyamines" - - - - - - 602617 "Interconversion of polyamines" - - - - - - GO:0006596 - - - - - - POLYAMSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. - GO:0006596 - polyamine anabolism - polyamine biosynthesis - polyamine biosynthetic process - polyamine formation - polyamine synthesis - - - - - - - - - - - - - GO:0006605 - - - - - - Protein_targeting - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. - GO:0006605 - nascent polypeptide association - protein sorting along secretory pathway - protein targeting - - - - - - - - - - - - GO:0006614 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. - ER translocation - GO:0006614 - SRP-dependent cotranslational membrane targeting - SRP-dependent cotranslational protein targeting to membrane - SRP-dependent cotranslational protein-membrane targeting - - - - - - - - - - - - - 448458 "Metabolism of lipids and lipoproteins" - - - - - - 469588 "Metabolism of lipids and lipoproteins" - - - - - - 487307 "Metabolism of lipids and lipoproteins" - - - - - - 507258 "Metabolism of lipids and lipoproteins" - - - - - - 517280 "Metabolism of lipids and lipoproteins" - - - - - - 526158 "Metabolism of lipids and lipoproteins" - - - - - - 531055 "Metabolism of lipids and lipoproteins" - - - - - - 536437 "Metabolism of lipids and lipoproteins" - - - - - - 542134 "Metabolism of lipids and lipoproteins" - - - - - - 547525 "Metabolism of lipids and lipoproteins" - - - - - - 552094 "Metabolism of lipids and lipoproteins" - - - - - - 557672 "Metabolism of lipids and lipoproteins" - - - - - - 568290 "Metabolism of lipids and lipoproteins" - - - - - - 581492 "Metabolism of lipids and lipoproteins" - - - - - - 585774 "Metabolism of lipids and lipoproteins" - - - - - - 592389 "Metabolism of lipids and lipoproteins" - - - - - - 595297 "Metabolism of lipids and lipoproteins" - - - - - - 597258 "Metabolism of lipids and lipoproteins" - - - - - - 598099 "Metabolism of lipids and lipoproteins" - - - - - - 599584 "Metabolism of lipids and lipoproteins" - - - - - - 600579 "Metabolism of lipids and lipoproteins" - - - - - - 602390 "Metabolism of lipids and lipoproteins" - - - - - - 73923 "Metabolism of lipids and lipoproteins" - - - - - - GO:0006629 - - - - - - Lipid_metabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. - GO:0006629 - lipid metabolic process - lipid metabolism - - - - - - - - - - - - 435828 "CYP4A11 omega-hydroxylates laurate" - - - - - - 458217 "CYP4A11 omega-hydroxylates laurate" - - - - - - 477703 "CYP4A11 omega-hydroxylates laurate" - - - - - - 497235 "CYP4A11 omega-hydroxylates laurate" - - - - - - 512469 "CYP4A11 omega-hydroxylates laurate" - - - - - - 521604 "CYP4A11 omega-hydroxylates laurate" - - - - - - 528801 "CYP4A11 omega-hydroxylates laurate" - - - - - - 533950 "CYP4A11 omega-hydroxylates laurate" - - - - - - 539444 "CYP4A11 omega-hydroxylates laurate" - - - - - - 549898 "CYP4A11 omega-hydroxylates laurate" - - - - - - 555052 "CYP4A11 omega-hydroxylates laurate" - - - - - - 563679 "CYP4A11 omega-hydroxylates laurate" - - - - - - 575739 "CYP4A11 omega-hydroxylates laurate" - - - - - - 589183 "CYP4A11 omega-hydroxylates laurate" - - - - - - 601486 "CYP4A11 omega-hydroxylates laurate" - - - - - - 76466 "CYP4A11 omega-hydroxylates laurate" - - - - - - Fatty_acid_metabolism - - - - - - GO:0006631 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. - GO:0006631 - fatty acid metabolic process - fatty acid metabolism - - - - - - - - - - - - - - FASYN-INITIAL-PWY - - - - - - Fatty_acid_synthesis - - - - - - GO:0000037 - - - - - - GO:0006633 - - - - - - PWY-4381 - - - - - - PWY-5156 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. - GO:0006633 - fatty acid anabolism - fatty acid biosynthesis - fatty acid biosynthetic process - fatty acid formation - fatty acid synthesis - - - - - - - - - - - - GO:0006644 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. - GO:0006644 - phospholipid metabolic process - phospholipid metabolism - - - - - - - - - - - - GO:0006662 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.; - GO:0006662 - glycerol ether metabolic process - glycerol ether metabolism - - - - - - - - - - - - GO:0006665 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).; - GO:0006665 - sphingolipid metabolic process - sphingolipid metabolism - - - - - - - - - - - - - GO:0006725 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. - GO:0006725 - aromatic compound metabolism - aromatic hydrocarbon metabolic process - aromatic hydrocarbon metabolism - cellular aromatic compound metabolic process - - - - - - - - - - - - GO:0006729 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine.; - GO:0006729 - tetrahydrobiopterin anabolism - tetrahydrobiopterin biosynthesis - tetrahydrobiopterin biosynthetic process - tetrahydrobiopterin formation - tetrahydrobiopterin synthesis - - - - - - - - - - - - - C1cyc - - - - - - GO:0006730 - - - - - - GO:0019753 - - - - - - GO:0019754 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. - GO:0006730 - one carbon metabolic process - one carbon metabolism - one-carbon metabolic process - one-carbon metabolism - one-carbon transfer metabolic process - one-carbon transfer metabolism - - - - - - - - - - - - 174403 "Glutathione synthesis" - - - - - - 449125 "Glutathione synthesis" - - - - - - 470235 "Glutathione synthesis" - - - - - - 487918 "Glutathione synthesis" - - - - - - 507890 "Glutathione synthesis" - - - - - - 517782 "Glutathione synthesis" - - - - - - 526613 "Glutathione synthesis" - - - - - - 531412 "Glutathione synthesis" - - - - - - 536783 "Glutathione synthesis" - - - - - - 542541 "Glutathione synthesis" - - - - - - 547869 "Glutathione synthesis" - - - - - - 552441 "Glutathione synthesis" - - - - - - 558053 "Glutathione synthesis" - - - - - - 568699 "Glutathione synthesis" - - - - - - 581901 "Glutathione synthesis" - - - - - - 592799 "Glutathione synthesis" - - - - - - 595527 "Glutathione synthesis" - - - - - - GLUTATHIONESYN-PWY - - - - - - GO:0006750 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. - GO:0006750 - glutathione anabolism - glutathione biosynthesis - glutathione biosynthetic process - glutathione formation - glutathione synthesis - - - - - - - - - - - - - 164832 "ATP is synthesized from ADP and Pi by ATPase" - - - - - - 164840 "ADP and Pi bind to ATPase" - - - - - - 430384 "ADP and Pi bind to ATPase" - - - - - - 432411 "ATP is synthesized from ADP and Pi by ATPase" - - - - - - 448753 "ATP formation" - - - - - - 452635 "ADP and Pi bind to ATPase" - - - - - - 454975 "ATP is synthesized from ADP and Pi by ATPase" - - - - - - 469868 "ATP formation" - - - - - - 473194 "ADP and Pi bind to ATPase" - - - - - - 474935 "ATP is synthesized from ADP and Pi by ATPase" - - - - - - 487572 "ATP formation" - - - - - - 491585 "ADP and Pi bind to ATPase" - - - - - - 493796 "ATP is synthesized from ADP and Pi by ATPase" - - - - - - 507528 "ATP formation" - - - - - - 517512 "ATP formation" - - - - - - 526381 "ATP formation" - - - - - - 531199 "ATP formation" - - - - - - 536574 "ATP formation" - - - - - - 542300 "ATP formation" - - - - - - 547641 "ATP formation" - - - - - - 552233 "ATP formation" - - - - - - 557838 "ATP formation" - - - - - - 568440 "ATP formation" - - - - - - 581642 "ATP formation" - - - - - - 585804 "ATP formation" - - - - - - 592554 "ATP formation" - - - - - - 595374 "ATP formation" - - - - - - 597332 "ATP formation" - - - - - - 598137 "ATP formation" - - - - - - 599763 "ATP formation" - - - - - - 600598 "ATP formation" - - - - - - 602499 "ATP formation" - - - - - - 74226 "ATP formation" - - - - - - GO:0006754 - - - - - - GO:0006758 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.; - ATP anabolism - ATP biosynthesis - ATP biosynthetic process - ATP formation - ATP synthesis - GO:0006754 - - - - - - - - - - - - - GO:0006760 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving folic acid and its derivatives. - GO:0006760 - folate and derivative metabolic process - folate and derivative metabolism - folic acid and derivative metabolic process - folic acid and derivative metabolism - vitamin B9 and derivative metabolic process - vitamin B9 and derivative metabolism - vitamin M and derivative metabolic process - vitamin M and derivative metabolism - - - - - - - - - - - - GO:0006772 - - - - - - Thiamine - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. - GO:0006772 - thiamin metabolic process - thiamin metabolism - thiamine metabolic process - thiamine metabolism - vitamin B1 metabolic process - vitamin B1 metabolism - - - - - - - - - - - - - GO:0006777 - - - - - - PWY-5354 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. - GO:0006777 - Mo-molybdopterin cofactor anabolism - Mo-molybdopterin cofactor biosynthesis - Mo-molybdopterin cofactor biosynthetic process - Mo-molybdopterin cofactor formation - Mo-molybdopterin cofactor synthesis - Moco biosynthesis - Moco biosynthetic process - molybdenum cofactor biosynthetic process - - - - - - - - - - - - - GO:0006779 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. - GO:0006779 - porphyrin anabolism - porphyrin biosynthesis - porphyrin biosynthetic process - porphyrin formation - porphyrin synthesis - - - - - - - - - - - - - 189451 "Heme biosynthesis" - - - - - - 448780 "Heme biosynthesis" - - - - - - 469895 "Heme biosynthesis" - - - - - - 487602 "Heme biosynthesis" - - - - - - 507557 "Heme biosynthesis" - - - - - - 517535 "Heme biosynthesis" - - - - - - 526731 "Heme biosynthesis" - - - - - - 531222 "Heme biosynthesis" - - - - - - 536592 "Heme biosynthesis" - - - - - - 542318 "Heme biosynthesis" - - - - - - 547658 "Heme biosynthesis" - - - - - - 552243 "Heme biosynthesis" - - - - - - 557862 "Heme biosynthesis" - - - - - - 568460 "Heme biosynthesis" - - - - - - 581671 "Heme biosynthesis" - - - - - - 592580 "Heme biosynthesis" - - - - - - 595394 "Heme biosynthesis" - - - - - - 597338 "Heme biosynthesis" - - - - - - 598143 "Heme biosynthesis" - - - - - - 599697 "Heme biosynthesis" - - - - - - 600604 "Heme biosynthesis" - - - - - - 602506 "Heme biosynthesis" - - - - - - GO:0006783 - - - - - - HEMESYN2-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors. - GO:0006783 - haem biosynthesis - haem biosynthetic process - heme anabolism - heme biosynthesis - heme biosynthetic process - heme formation - heme synthesis - - - - - - - - - - - - - GO:0006784 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of heme a, a derivative of heme found in cytochrome aa3. - GO:0006784 - haem a biosynthesis - haem a biosynthetic process - heme a anabolism - heme a biosynthesis - heme a biosynthetic process - heme a formation - heme a synthesis - - - - - - - - - - - - - GO:0006790 - - - - - - Sulfur_metabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. - GO:0006790 - sulfur metabolic process - sulfur metabolism - sulphur metabolic process - sulphur metabolism - - - - - - - - - - - - GO:0006801 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. - GO:0006801 - oxygen free radical metabolic process - oxygen free radical metabolism - superoxide free radical metabolic process - superoxide free radical metabolism - superoxide metabolic process - superoxide metabolism - - - - - - - - - - - - - GO:0006807 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. - GO:0006807 - nitrogen compound metabolic process - nitrogen compound metabolism - - - - - - - - - - - - GO:0006808 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of nitrogen utilization. - GO:0006808 - regulation of nitrogen utilization - - - - - - - - - - - - GO:0006809 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. - GO:0006809 - nitric oxide anabolism - nitric oxide biosynthesis - nitric oxide biosynthetic process - nitric oxide formation - nitric oxide synthesis - - - - - - - - - - - - GO:0006810 - - - - - - GO:0015457 - - - - - - GO:0015460 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore.; - GO:0006810 - auxiliary transport protein - small molecule transport - solute:solute exchange - transport - transport accessory protein - - - - - - - - - - - - - GO:0006811 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of charged atoms or small charged molecules into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006811 - ion transport - - - - - - - - - - - - - GO:0006812 - - - - - - GO:0006819 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006812 - cation transport - - - - - - - - - - - - - - GO:0006813 - - - - - - GO:0015458 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of potassium ions (K+) into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006813 - K+ conductance - low voltage-dependent potassium channel auxiliary protein - low voltage-gated potassium channel auxiliary protein - potassium conductance - potassium ion conductance - potassium ion transport - potassium transport - sodium potassium transport - - - - - - - - - - - - - - GO:0006814 - - - - - - GO:0006834 - - - - - - GO:0016974 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of sodium ions (Na+) into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006814 - mitochondrial sodium calcium ion exchange - sodium channel auxiliary protein - sodium ion transport - sodium potassium transport - sodium transport - sodium:calcium exchange - sodium:solute transport - - - - - - - - - - - - GO:0006816 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of calcium (Ca) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006816 - calcium ion transport - calcium transport - mitochondrial sodium calcium ion exchange - sodium:calcium exchange - - - - - - - - - - - - - GO:0006817 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of phosphate into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006817 - phosphate transport - - - - - - - - - - - - GO:0006824 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of cobalt (Co) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006824 - cobalt ion transport - cobalt transport - - - - - - - - - - - - GO:0006825 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of copper (Cu) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006825 - copper ion transport - - - - - - - - - - - - GO:0006826 - - - - - - GO:0015681 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of iron (Fe) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006826 - iron ion transport - iron transport - - - - - - - - - - - - GO:0006827 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed, high-affinity movement of iron (Fe) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations. - GO:0006827 - high affinity iron ion transport - high-affinity iron ion transport - - - - - - - - - - - - GO:0006828 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of manganese (Mn) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006828 - manganese ion transport - - - - - - - - - - - - GO:0006829 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of zinc (Zn) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006829 - zinc ion transport - zinc transport - - - - - - - - - - - - GO:0006835 - - - - - - GO:0006841 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of dicarboxylic acids into, out of, within or between cells by means of some external agent such as a transporter or pore.; - GO:0006835 - dicarboxylic acid transport - sodium:dicarboxylate transport - - - - - - - - - - - - - GO:0006836 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a neurotransmitter into, out of, within or between cells by means of some external agent such as a transporter or pore. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell. - GO:0006836 - neurotransmitter transport - sodium:neurotransmitter transport - - - - - - - - - - - - - - GO:0006855 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of drugs across a membrane into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006855 - multidrug transport - - - - - - - - - - - - - GO:0006857 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of oligopeptides into, out of, within or between cells by means of some external agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. - GO:0006857 - oligopeptide transport - - - - - - - - - - - - - GO:0006859 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed extracellular movement of carbohydrates.; - GO:0006859 - extracellular carbohydrate transport - - - - - - - - - - - - 352230 "Amino acid transport across the plasma membrane" - - - - - - 449281 "Amino acid transport across the plasma membrane" - - - - - - 470401 "Amino acid transport across the plasma membrane" - - - - - - 488079 "Amino acid transport across the plasma membrane" - - - - - - 508045 "Amino acid transport across the plasma membrane" - - - - - - 517899 "Amino acid transport across the plasma membrane" - - - - - - 526725 "Amino acid transport across the plasma membrane" - - - - - - 531498 "Amino acid transport across the plasma membrane" - - - - - - 536887 "Amino acid transport across the plasma membrane" - - - - - - 542637 "Amino acid transport across the plasma membrane" - - - - - - 547953 "Amino acid transport across the plasma membrane" - - - - - - 552527 "Amino acid transport across the plasma membrane" - - - - - - 558149 "Amino acid transport across the plasma membrane" - - - - - - 568776 "Amino acid transport across the plasma membrane" - - - - - - 581979 "Amino acid transport across the plasma membrane" - - - - - - 586032 "Amino acid transport across the plasma membrane" - - - - - - 592887 "Amino acid transport across the plasma membrane" - - - - - - 597449 "Amino acid transport across the plasma membrane" - - - - - - 598213 "Amino acid transport across the plasma membrane" - - - - - - 599782 "Amino acid transport across the plasma membrane" - - - - - - 602616 "Amino acid transport across the plasma membrane" - - - - - - GO:0006865 - - - - - - GO:0006866 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0006865 - amino acid transport - - - - - - - - - - - - GO:0006875 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell. - GO:0006875 - cellular heavy metal ion homeostasis - cellular metal ion homeostasis - - - - - - - - - - - - GO:0006878 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of copper ions at the level of a cell. - GO:0006878 - cellular copper ion homeostasis - copper homeostasis - - - - - - - - - - - - GO:0006879 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell. - GO:0006879 - cellular iron ion homeostasis - iron homeostasis - - - - - - - - - - - - GO:0006885 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. - GO:0006885 - hydrogen ion homeostasis - regulation of pH - - - - - - - - - - - - - GO:0006886 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. - GO:0006886 - intracellular protein transport - - - - - - - - - - - - 199983 "Golgi to ER Retrograde Transport" - - - - - - 448814 "Golgi to ER Retrograde Transport" - - - - - - 469930 "Golgi to ER Retrograde Transport" - - - - - - 487633 "Golgi to ER Retrograde Transport" - - - - - - 507592 "Golgi to ER Retrograde Transport" - - - - - - 517560 "Golgi to ER Retrograde Transport" - - - - - - 526426 "Golgi to ER Retrograde Transport" - - - - - - 531243 "Golgi to ER Retrograde Transport" - - - - - - 536614 "Golgi to ER Retrograde Transport" - - - - - - 542338 "Golgi to ER Retrograde Transport" - - - - - - 547679 "Golgi to ER Retrograde Transport" - - - - - - 552341 "Golgi to ER Retrograde Transport" - - - - - - 557888 "Golgi to ER Retrograde Transport" - - - - - - 568486 "Golgi to ER Retrograde Transport" - - - - - - 581697 "Golgi to ER Retrograde Transport" - - - - - - 585897 "Golgi to ER Retrograde Transport" - - - - - - 592604 "Golgi to ER Retrograde Transport" - - - - - - 595453 "Golgi to ER Retrograde Transport" - - - - - - GO:0006890 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. - GO:0006890 - retrograde transport - retrograde transport Golgi to ER - retrograde transport Golgi to endoplasmic reticulum - retrograde vesicle-mediated transport Golgi to endoplasmic reticulum - retrograde vesicle-mediated transport, Golgi to ER - - - - - - - - - - - - - 109581 "Apoptosis" - - - - - - 193648 "NRAGE signals death through JNK" - - - - - - 205025 "NADE modulates death signalling" - - - - - - 205043 "NRIF signals cell death from the nucleus" - - - - - - 448508 "NADE modulates death signalling" - - - - - - 448611 "NRAGE signals death through JNK" - - - - - - 448685 "Apoptosis" - - - - - - 449127 "NRIF signals cell death from the nucleus" - - - - - - 469638 "NADE modulates death signalling" - - - - - - 469739 "NRAGE signals death through JNK" - - - - - - 469808 "Apoptosis" - - - - - - 470237 "NRIF signals cell death from the nucleus" - - - - - - 487550 "NRAGE signals death through JNK" - - - - - - 487666 "Apoptosis" - - - - - - 487920 "NRIF signals cell death from the nucleus" - - - - - - 507462 "Apoptosis" - - - - - - 507506 "NRAGE signals death through JNK" - - - - - - 507977 "NRIF signals cell death from the nucleus" - - - - - - 517491 "NRAGE signals death through JNK" - - - - - - 517584 "Apoptosis" - - - - - - 526360 "NRAGE signals death through JNK" - - - - - - 526461 "Apoptosis" - - - - - - 531265 "Apoptosis" - - - - - - 536644 "Apoptosis" - - - - - - 542372 "Apoptosis" - - - - - - 547717 "Apoptosis" - - - - - - 552296 "Apoptosis" - - - - - - 558146 "Apoptosis" - - - - - - 568771 "Apoptosis" - - - - - - 581974 "Apoptosis" - - - - - - 585866 "Apoptosis" - - - - - - 592641 "Apoptosis" - - - - - - 595585 "Apoptosis" - - - - - - Apoptosis - - - - - - GO:0006915 - - - - - - GO:0008632 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell. - GO:0006915 - apoptosis - apoptotic cell death - apoptotic program - apoptotic programmed cell death - programmed cell death by apoptosis - signaling caspase - type I programmed cell death - - - - - - - - - - - - - GO:0006928 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. - GO:0006928 - cell movement - cellular component motion - cellular component movement - - - - - - - - - - - - Chemotaxis - - - - - - GO:0006935 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). - GO:0006935 - chemotaxis - taxis in response to chemical stimulus - - - - - - - - - - - - - GO:0006950 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).; - GO:0006950 - response to abiotic stress - response to biotic stress - response to stress - - - - - - - - - - - - - GO:0006974 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. - DNA damage response - GO:0006974 - response to DNA damage stimulus - response to genotoxic stress - - - - - - - - - - - - - GO:0006979 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. - GO:0006979 - response to oxidative stress - - - - - - - - - - - - GO:0007040 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases. - GO:0007040 - lysosome organisation - lysosome organization - lysosome organization and biogenesis - - - - - - - - - - - - GO:0007047 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. - GO:0007047 - cell wall organization and biogenesis - cell wall organization at cellular level - cellular cell wall organisation - cellular cell wall organization - - - - - - - - - - - - - Cell_cycle - - - - - - GO:0007049 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. - GO:0007049 - cell cycle - cell-division cycle - - - - - - - - - - - - - Chromosome_segregation - - - - - - GO:0007059 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets. - GO:0007059 - chromosome division - chromosome segregation - chromosome transmission - - - - - - - - - - - - - Cell_adhesion - - - - - - GO:0007155 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. - GO:0007155 - cell adhesion - cell adhesion molecule - - - - - - - - - - - - 212718 "EGFR interacts with phospholipase C-gamma" - - - - - - 448734 "EGFR interacts with phospholipase C-gamma" - - - - - - 469856 "EGFR interacts with phospholipase C-gamma" - - - - - - 487553 "EGFR interacts with phospholipase C-gamma" - - - - - - 507509 "EGFR interacts with phospholipase C-gamma" - - - - - - GO:0007165 - - - - - - Signal_transduction - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell. - GO:0007165 - signal transduction - signaling - signaling cascade - signalling - signalling cascade - - - - - - - - - - - - GO:0007205 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand. - GO:0007205 - PKC activation - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway - activation of protein kinase C activity by G-protein coupled receptor protein signalling pathway - protein kinase C activation - - - - - - - - - - - - 187706 "Signalling to p38 via RIT and RIN" - - - - - - 194315 "Signaling by Rho GTPases" - - - - - - 448659 "Signalling to p38 via RIT and RIN" - - - - - - 449054 "Signaling by Rho GTPases" - - - - - - 469787 "Signalling to p38 via RIT and RIN" - - - - - - 470168 "Signaling by Rho GTPases" - - - - - - 487481 "Signalling to p38 via RIT and RIN" - - - - - - 487858 "Signaling by Rho GTPases" - - - - - - 507441 "Signalling to p38 via RIT and RIN" - - - - - - 507829 "Signaling by Rho GTPases" - - - - - - 517445 "Signalling to p38 via RIT and RIN" - - - - - - 517735 "Signaling by Rho GTPases" - - - - - - 526319 "Signalling to p38 via RIT and RIN" - - - - - - 526573 "Signaling by Rho GTPases" - - - - - - 531369 "Signalling to p38 via RIT and RIN" - - - - - - 531376 "Signaling by Rho GTPases" - - - - - - 536745 "Signalling to p38 via RIT and RIN" - - - - - - 536751 "Signaling by Rho GTPases" - - - - - - 542494 "Signalling to p38 via RIT and RIN" - - - - - - 542501 "Signaling by Rho GTPases" - - - - - - 547821 "Signalling to p38 via RIT and RIN" - - - - - - 547828 "Signaling by Rho GTPases" - - - - - - 552389 "Signalling to p38 via RIT and RIN" - - - - - - 552396 "Signaling by Rho GTPases" - - - - - - 557994 "Signalling to p38 via RIT and RIN" - - - - - - 558004 "Signaling by Rho GTPases" - - - - - - 568645 "Signalling to p38 via RIT and RIN" - - - - - - 568653 "Signaling by Rho GTPases" - - - - - - 581849 "Signalling to p38 via RIT and RIN" - - - - - - 581857 "Signaling by Rho GTPases" - - - - - - 585923 "Signaling by Rho GTPases" - - - - - - 592755 "Signalling to p38 via RIT and RIN" - - - - - - 592763 "Signaling by Rho GTPases" - - - - - - 595490 "Signalling to p38 via RIT and RIN" - - - - - - GO:0007264 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. - GO:0007264 - small GTPase mediated signal transduction - small GTPase-mediated signal transduction - - - - - - - - - - - - GO:0007587 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0007587 - sugar utilization - - - - - - - - - - - - GO:0007606 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. - GO:0007606 - chemosensory perception - sensory perception of chemical stimulus - - - - - - - - - - - - GO:0008026 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate to drive the unwinding of a DNA or RNA helix. - ATP-dependent helicase - GO:0008026 - - - - - - - - - - - - GO:0008033 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. - GO:0008033 - tRNA maturation - tRNA processing - - - - - - - - - - - - GO:0008076 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential.; - GO:0008076 - voltage gated potassium channel complex - voltage-dependent potassium channel complex - voltage-gated potassium channel complex - voltage-sensitive potassium channel complex - - - - - - - - - - - - - 2.3.1.- - - - - - - GO:0008080 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule. - GO:0008080 - N-acetyltransferase - - - - - - - - - - - - 3.1.4.- - - - - - - GO:0008081 - - - - - - GO:0016792 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group. - GO:0008081 - endonuclease VIII - phosphodiesterase - phosphoric diester hydrolase - - - - - - - - - - - - GO:0004011 - - - - - - GO:0008094 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate in the presence of single- or double-stranded DNA; drives another reaction. - DNA dependent ATPase - DNA-dependent ATPase - DNA-dependent adenosinetriphosphatase - GO:0008094 - adenosinetriphosphatase - - - - - - - - - - - - - GO:0008097 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome. - 5S rRNA binding - GO:0008097 - - - - - - - - - - - - 2.7.7.12 - - - - - - 22869 "UDP-glucose:hexose-1-phosphate uridylyltransferase activity" - - - - - - GALACTURIDYLYLTRANS-RXN - - - - - - GO:0008108 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose. - GO:0008108 - Gal-1-P uridylyltransferase - UDP-glucose-hexose-1-phosphate uridylyltransferase - UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase - UDP-glucose:hexose-1-phosphate uridylyltransferase - UDPglucose-hexose-1-phosphate uridylyltransferase - UDPglucose:alpha-D-galactose-1-phosphate uridylyltransferase - galactose-1-phosphate uridylyltransferase - hexose 1-phosphate uridyltransferase - hexose-1-phosphate uridylyltransferase - uridyl transferase - uridyltransferase - uridylyl removing enzyme - - - - - - - - - - - - - 1.8.4.11 - - - - - - GO:0008113 - - - - - - GO:0033742 - - - - - - RXN-8668 - - - - - - RXN-8669 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. - GO:0008113 - MsrA - methionine S-oxide reductase - methionine sulfoxide reductase - methionine sulfoxide reductase A - methionine sulphoxide reductase A - peptide methionine sulfoxide reductase - peptide reductase - peptide-L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine - peptide-methionine-(S)-S-oxide reductase - protein-methionine-S-oxide reductase - - - - - - - - - - - - - 1.10.2.2 - - - - - - 1.10.2.2-RXN - - - - - - GO:0008121 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+. - CoQH2-cytochrome c oxidoreductase - GO:0008121 - QH2:cytochrome c oxidoreductase - coenzyme Q-cytochrome c reductase - coenzyme QH2-cytochrome c reductase - complex III - cytochrome bc1 complex - dihydrocoenzyme Q-cytochrome c reductase - mitochondrial electron transport complex III - reduced coenzyme Q-cytochrome c reductase - reduced ubiquinone-cytochrome c oxidoreductase - reduced ubiquinone-cytochrome c reductase complex III - ubihydroquinol:cytochrome c oxidoreductase - ubiquinol-cytochrome c oxidoreductase - ubiquinol-cytochrome c-2 oxidoreductase - ubiquinol-cytochrome c1 oxidoreductase - ubiquinol-cytochrome c2 reductase - ubiquinol-cytochrome-c reductase - ubiquinol:ferricytochrome-c oxidoreductase - ubiquinone--cytochrome-c oxidoreductase - ubiquinone-cytochrome b-c1 oxidoreductase - ubiquinone-cytochrome c oxidoreductase - ubiquinone-cytochrome c reductase - - - - - - - - - - - - - 1.13.11.24 - - - - - - GO:0008127 - - - - - - QUERCETIN-23-DIOXYGENASE-RXN - - - - - - e0559 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: quercetin + O2 = 2-protocatechuoylphloroglucinolcarboxylate + CO. - GO:0008127 - flavonol 2 4-oxygenase - quercetin 2,3-dioxygenase - quercetin:oxygen 2 3-oxidoreductase - quercetinase - - - - - - - - - - - - - GO:0008134 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription. - GO:0008134 - TF binding - transcription factor binding - - - - - - - - - - - - - 1.6.5.3 - - - - - - 22973 "NADH dehydrogenase (ubiquinone) activity" - - - - - - GO:0008137 - - - - - - NADH-DEHYDROG-A-RXN - - - - - - RXN0-5330 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.; - DPNH-coenzyme Q reductase - DPNH-ubiquinone reductase - GO:0008137 - NADH coenzyme Q1 reductase - NADH dehydrogenase (ubiquinone) - NADH-CoQ oxidoreductase - NADH-CoQ reductase - NADH-Q6 oxidoreductase - NADH-coenzyme Q oxidoreductase - NADH-coenzyme Q reductase - NADH-ubiquinone oxidoreductase - NADH-ubiquinone reductase - NADH-ubiquinone-1 reductase - NADH:ubiquinone oxidoreductase - NADH:ubiquinone oxidoreductase complex - coenzyme Q reductase - complex 1 dehydrogenase - complex I - dihydronicotinamide adenine dinucleotide-coenzyme Q reductase - electron transfer complex I - mitochondrial electron transport complex 1 - mitochondrial electron transport complex I - reduced nicotinamide adenine dinucleotide-coenzyme Q reductase - type 1 dehydrogenase - ubiquinone reductase - - - - - - - - - - - - GO:0008152 - - - - - - Metabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. - GO:0008152 - metabolic process - metabolic process resulting in cell growth - metabolism - metabolism resulting in cell growth - - - - - - - - - - - - - GO:0008156 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication. - DNA replication inhibitor - GO:0008156 - down regulation of DNA replication - down-regulation of DNA replication - downregulation of DNA replication - inhibition of DNA replication - negative regulation of DNA replication - - - - - - - - - - - - 1062 "methyltransferase activity" - - - - - - 2.1.1.- - - - - - - GO:0004480 - - - - - - GO:0008168 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group to an acceptor molecule. - GO:0008168 - methylase - methyltransferase - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0008170 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule. - GO:0008170 - N-methyltransferase - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0008171 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. - GO:0008171 - O-methyltransferase - - - - - - - - - - - - - 1979 "RNA methyltransferase activity" - - - - - - 2.1.1.- - - - - - - GO:0008173 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. - GO:0008173 - RNA methyltransferase - - - - - - - - - - - - 2.1.1.33 - - - - - - GO:0008176 - - - - - - TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N7-methylguanine.; - 7-methylguanine transfer ribonucleate methylase - GO:0008176 - N7-methylguanine methylase - S-adenosyl-L-methionine:tRNA - tRNA (guanine-N7-)-methyltransferase - tRNA guanine 7-methyltransferase - transfer ribonucleate guanine 7-methyltransferase - - - - - - - - - - - - - GO:0008198 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with ferrous iron, Fe(II). - GO:0008198 - ferrous iron binding - - - - - - - - - - - - - GO:0008199 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with ferric iron, Fe(III). - GO:0008199 - ferric iron binding - - - - - - - - - - - - - 1687 "peptidase activity" - - - - - - 3.4.-.- - - - - - - GO:0008233 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. - GO:0008233 - hydrolase acting on peptide bonds - peptidase - peptide hydrolase - protease - proteinase - - - - - - - - - - - - - 3.4.-.- - - - - - - GO:0004220 - - - - - - GO:0008234 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. - GO:0008234 - cysteine protease - cysteine-type peptidase - thiol protease - - - - - - - - - - - - - GO:0008235 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. - GO:0008235 - metalloexopeptidase - - - - - - - - - - - - - GO:0008236 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). - GO:0008236 - serine protease - serine-type peptidase - - - - - - - - - - - - - 1795 "metallopeptidase activity" - - - - - - GO:0008237 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. - GO:0008237 - metallopeptidase - metalloprotease - metalloproteinase - - - - - - - - - - - - 23614 "5'-nucleotidase activity" - - - - - - 3.1.3.5 - - - - - - 5-NUCLEOTID-RXN - - - - - - GO:0008253 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate. - 5' nucleotidase - 5'-AMP nucleotidase - 5'-AMPase - 5'-adenylic phosphatase - 5'-mononucleotidase - 5'-nucleotidase - 5'-ribonucleotide phosphohydrolase - AMP phosphatase - AMP phosphohydrolase - AMPase - GO:0008253 - UMPase - adenosine 5'-phosphatase - adenosine monophosphatase - snake venom 5'-nucleotidase - thimidine monophosphate nucleotidase - uridine 5'-nucleotidase - - - - - - - - - - - - - 2.8.3.5 - - - - - - 23643 "3-oxoacid CoA-transferase activity" - - - - - - 3-OXOACID-COA-TRANSFERASE-RXN - - - - - - GO:0008260 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA. - 3-ketoacid CoA-transferase - 3-ketoacid coenzyme A transferase - 3-oxo-CoA transferase - 3-oxoacid CoA dehydrogenase - 3-oxoacid CoA-transferase - 3-oxoacid coenzyme A-transferase - GO:0008260 - acetoacetate succinyl-CoA transferase - acetoacetyl coenzyme A-succinic thiophorase - succinyl coenzyme A-acetoacetyl coenzyme A-transferase - succinyl-CoA transferase - succinyl-CoA:3-ketoacid-CoA transferase - succinyl-CoA:3-oxo-acid CoA-transferase - - - - - - - - - - - - - 23683 "zinc ion binding" - - - - - - GO:0008270 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with zinc (Zn) ions. - GO:0008270 - zinc binding - zinc ion binding - - - - - - - - - - - - GO:0008271 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the secondary active transfer of sulfate from one side of the membrane to the other. Secondary active transport is catalysis of the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Chemiosmotic sources of energy include uniport, symport or antiport. - GO:0008271 - secondary active sulfate transmembrane transporter - secondary active sulphate transmembrane transporter - sulfate porter - sulphate porter - - - - - - - - - - - - - GO:0006870 - - - - - - GO:0008272 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of sulfate into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0008272 - sulfate transport - sulphate transport - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0008276 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group (CH3-) to a protein. - GO:0008276 - protein methyltransferase - - - - - - - - - - - - - GO:0008289 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a lipid. - GO:0008289 - lipid binding - - - - - - - - - - - - - BSUBPOLYAMSYN-PWY - - - - - - GO:0008295 - - - - - - POLYAMINSYN3-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. - GO:0008295 - spermidine anabolism - spermidine biosynthesis - spermidine biosynthetic process - spermidine formation - spermidine synthesis - - - - - - - - - - - - - - GO:0008299 - - - - - - GO:0009241 - - - - - - POLYISOPRENSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. - GO:0008299 - isoprenoid anabolism - isoprenoid biosynthesis - isoprenoid biosynthetic process - isoprenoid formation - isoprenoid synthesis - polyisoprenoid anabolism - polyisoprenoid biosynthesis - polyisoprenoid biosynthetic process - polyisoprenoid formation - polyisoprenoid synthesis - polyterpene biosynthesis - polyterpene biosynthetic process - - - - - - - - - - - - - GO:0008312 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). - 7S RNA binding - GO:0008312 - - - - - - - - - - - - - GO:0008324 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of cation from one side of the membrane to the other. - GO:0008324 - cation transmembrane transporter - transmembrane cation transporter - - - - - - - - - - - - - Asymmetric_cell_division - - - - - - GO:0008356 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. - GO:0008356 - asymmetric cell division - asymmetric cytokinesis - asymmetrical cell division - asymmetrical cytokinesis - - - - - - - - - - - - GO:0008360 - - - - - - GO:0045788 - - - - - - GO:0045789 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the surface configuration of a cell. - GO:0008360 - regulation of cell shape - - - - - - - - - - - - - - 1.11.1.- - - - - - - GO:0008379 - - - - - - GO:0009031 - - - - - - RXN0-267 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: thioredoxin + H2O2 = thioredoxin disulfide + H2O. - GO:0008379 - TPx - TrxPx - thiol peroxidase - thioredoxin peroxidase - - - - - - - - - - - - - GO:0008408 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. - 3'-5' exonuclease - 3'-5'-exonuclease - GO:0008408 - - - - - - - - - - - - - GO:0008409 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end. - 5'-3' exonuclease - GO:0008409 - - - - - - - - - - - - 2.8.3.- - - - - - - GO:0008410 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor).; - CoA-transferase - GO:0008410 - - - - - - - - - - - - - 1091 "acyltransferase activity" - - - - - - 2.3.1.- - - - - - - GO:0008415 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier. - GO:0008415 - acyltransferase - - - - - - - - - - - - 24620 "3'(2'),5'-bisphosphate nucleotidase activity" - - - - - - 3.1.3.7 - - - - - - 325-BISPHOSPHATE-NUCLEOTIDASE-RXN - - - - - - GO:0008441 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate. - 3'(2'),5'-bisphosphate nucleotidase - 3'-phosphoadenylylsulfate 3'-phosphatase - 5' bisphosphate nucleotidase - 5'-bisphosphate - 5'-bisphosphonucleoside - DPNPase - GO:0008441 - phosphoadenylate 3'-nucleotidase - - - - - - - - - - - - - 1.1.1.31 - - - - - - 24621 "3-hydroxyisobutyrate dehydrogenase activity" - - - - - - 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN - - - - - - GO:0008442 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-hydroxy-2-methylpropanoate + NAD+ = 2-methyl-3-oxopropanoate + NADH + H+. - 3-hydroxyisobutyrate dehydrogenase - GO:0008442 - - - - - - - - - - - - - - 2.7.1.- - - - - - - GO:0008443 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphate group, usually from ATP, to a fructose substrate molecule. - GO:0008443 - phosphofructokinase - - - - - - - - - - - - 2.7.8.5 - - - - - - GO:0008444 - - - - - - PHOSPHAGLYPSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CDP-diacylglycerol + glycerol 3-phosphate = CMP + 3-(3-phosphatidyl)-glycerol 1-phosphate. - 3-phosphatidyl-1'-glycerol-3'-phosphate synthase - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase - CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase - CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase - CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase - CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase - CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase - GO:0008444 - PGP synthase - cytidine 5'-diphospho-1 2-diacyl-sn-glycerol phosphatidyltransferase - glycerol 3-phosphate phosphatidyltransferase - glycerol phosphate phosphatidyltransferase - glycerophosphate phosphatidyltransferase - phosphatidylglycerol phosphate synthase - phosphatidylglycerol phosphate synthetase - phosphatidylglycerolphosphate synthase - phosphatidylglycerophosphate synthase - phosphatidylglycerophosphate synthetase - sn-glycerol-3-phosphate phosphatidyltransferase - - - - - - - - - - - - - 3.5.1.25 - - - - - - GO:0008448 - - - - - - NAG6PDEACET-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetate. - 2-acetamido-2-deoxy-D-glucose-6-phosphate amidohydrolase - GO:0008448 - N-acetyl-D-glucosamine-6-phosphate amidohydrolase - N-acetylglucosamine-6-phosphate deacetylase - acetylaminodeoxyglucosephosphate acetylhydrolase - acetylglucosamine phosphate deacetylase - - - - - - - - - - - - - 4.2.1.46 - - - - - - DTDPGLUCDEHYDRAT-RXN - - - - - - GO:0008460 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-D-glucose + H2O. - GO:0008460 - TDP-glucose oxidoreductase - dTDP-glucose 4 6-hydro-lyase - dTDP-glucose 4,6-dehydratase - dTDPglucose 4 6-dehydratase - dTDPglucose 4 6-hydro-lyase - thymidine diphosphoglucose oxidoreductase - - - - - - - - - - - - - 2.4.2.29 - - - - - - GO:0008479 - - - - - - QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine. - GO:0008479 - Q-insertase - [tRNA]-guanine:queuine tRNA-D-ribosyltransferase - guanine insertion enzyme - guanine queuine-tRNA transglycosylase - queuine tRNA-ribosyltransferase - queuine transfer ribonucleate ribosyltransferase - tRNA guanine transglycosidase - tRNA transglycosylase - tRNA-guanine transglycosylase - transfer ribonucleate glycosyltransferase - - - - - - - - - - - - 1.8.3.1 - - - - - - GO:0008482 - - - - - - PWY-5326 - - - - - - SULFITE-OXIDASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: SO3(2-) (sulfite) + O2 + H2O = SO4(2-) (sulfate) + H2O2.; - GO:0008482 - sulfite oxidase - sulfite:oxygen oxidoreductase - sulphite oxidase - - - - - - - - - - - - - 2.6.1.- - - - - - - GO:0008483 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. - GO:0008483 - aminotransferase - transaminase - - - - - - - - - - - - - 3.1.6.- - - - - - - ARYLSULFAT-RXN - - - - - - GO:0008484 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: RSO-R' + H2O = RSOOH + R'H. This reaction is the hydrolysis of any sulfuric ester bond, any ester formed from sulfuric acid, O=SO(OH)2. - GO:0008484 - sulfatase - sulfuric ester hydrolase - sulphuric ester hydrolase - - - - - - - - - - - - - 24735 "gamma-glutamyl carboxylase activity" - - - - - - 4.1.1.- - - - - - - GO:0008488 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0008488 - gamma-glutamyl carboxylase - - - - - - - - - - - - 2.5.1.- - - - - - - GO:0008495 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0008495 - haem O synthase - heme O synthase - protohaem IX farnesyltransferase - protoheme IX farnesyltransferase - - - - - - - - - - - - 24856 "bile acid:sodium symporter activity" - - - - - - GO:0008508 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in). - GO:0008508 - bile acid:sodium symporter - sodium bile acid symporter - - - - - - - - - - - - GO:0008514 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of organic anions from one side of a membrane to the other. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. - GO:0008514 - organic anion transmembrane transporter - - - - - - - - - - - - GO:0008519 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. - GO:0008519 - ammonium transmembrane transporter - - - - - - - - - - - - - - 2.7.1.26 - - - - - - 24927 "riboflavin kinase activity" - - - - - - GO:0008531 - - - - - - RIBOFLAVINKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + riboflavin = ADP + FMN. - ATP:riboflavin 5'-phosphotransferase - FK - GO:0008531 - flavokinase - riboflavin kinase - riboflavine kinase - - - - - - - - - - - - - 24932 "oxidized purine base lesion DNA N-glycosylase activity" - - - - - - 3.2.2.23 - - - - - - 3.2.2.23-RXN - - - - - - GO:0003907 - - - - - - GO:0008534 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme-substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site. - 2 6-diamino-4-hydroxy-5N-formamidopyrimidine-DNA glycosylase - 2 glycosylase - 8-oxoguanine DNA glycosylase - DNA glycohydrolase [2 releasing] - DNA glycosylase AP-lyase - DNA glycosylase beta-lyase - DNA-formamidopyrimidine glycosylase - Fapy-DNA glycosylase - Fpg protein - GO:0008534 - bifunctional DNA glycosylase - deoxyribonucleate glycosidase - fapy-DNA glycosylase - formamidopyrimidine-DNA glycosylase - oxidized purine base lesion DNA N-glycosylase - purine-specific oxidized base lesion DNA N-glycosylase - - - - - - - - - - - - GO:0008535 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.; - GO:0008535 - cytochrome c oxidase biogenesis - cytochrome c oxidase complex assembly - respiratory chain complex IV assembly - - - - - - - - - - - - - 3.6.3.3 - - - - - - 3.6.3.3-RXN - - - - - - GO:0008551 - - - - - - GO:0008561 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cd2+(in) = ADP + phosphate + Cd2+(out). - ATP phosphohydrolase - ATPase - Cd2+-exporting ATPase - GO:0008551 - cadmium exporting ATPase - cadmium-exporting ATPase - cadmium-translocating P-type ATPase - cd2+-exporting ATPase - - - - - - - - - - - - - - 3.6.3.6 - - - - - - 3.6.3.6-RXN - - - - - - GO:0008553 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out); by a phosphorylative mechanism. - ATP phosphohydrolase - ATPase - GO:0008553 - H+-exporting ATPase - H+-transporting ATPase - hydrogen exporting ATPase activity phosphorylative mechanism - hydrogen- sodium-translocating ATPase - hydrogen-exporting ATPase activity, phosphorylative mechanism - proton transport ATPase - proton-exporting ATPase - proton-translocating ATPase - proton-translocating P-type ATPase - yeast plasma membrane ATPase - yeast plasma membrane H+-ATPase - - - - - - - - - - - - GO:0008565 - - - - - - GO:0015463 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of proteins into, out of, within or between cells. - GO:0008565 - enzyme transporter - holin - protein carrier - protein transport chaperone - protein transporter - secretin - - - - - - - - - - - - - - GO:0008610 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.; - GO:0008610 - lipid anabolism - lipid biosynthesis - lipid biosynthetic process - lipid formation - lipid synthesis - lipogenesis - - - - - - - - - - - - - GO:0008616 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents. - GO:0008616 - queuosine anabolism - queuosine biosynthesis - queuosine biosynthetic process - queuosine formation - queuosine synthesis - - - - - - - - - - - - - GO:0006861 - - - - - - GO:0008643 - - - - - - GO:0008644 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of carbohydrate into, out of, within or between cells by means of some external agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. - GO:0008643 - carbohydrate transport - sugar transport - - - - - - - - - - - - 189200 "Hexose uptake" - - - - - - 449305 "Hexose uptake" - - - - - - 470424 "Hexose uptake" - - - - - - 488102 "Hexose uptake" - - - - - - 508071 "Hexose uptake" - - - - - - GO:0008645 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of hexose into, out of, within or between cells by means of some external agent such as a transporter or pore. Hexoses are any aldoses with a chain of six carbon atoms in the molecule. - GO:0008645 - hexose transport - - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0008649 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. - GO:0008649 - rRNA methyltransferase - - - - - - - - - - - - - Amino_acid_synthesis - - - - - - GO:0008652 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. - GO:0008652 - cellular amino acid anabolism - cellular amino acid biosynthesis - cellular amino acid biosynthetic process - cellular amino acid formation - cellular amino acid synthesis - - - - - - - - - - - - - - - GO:0008654 - - - - - - LIPASYN-PWY - - - - - - PHOSLIPSYN-PWY - - - - - - PHOSLIPSYN2-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. - GO:0008654 - phospholipid anabolism - phospholipid biosynthesis - phospholipid biosynthetic process - phospholipid formation - phospholipid synthesis - - - - - - - - - - - - - GO:0008655 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that generates a pyrimidine, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis. - GO:0008655 - pyrimidine salvage - - - - - - - - - - - - GO:0008658 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with penicillin, any antibiotic that contains the condensed beta-lactamthiazolidine ring system. - GO:0008658 - penicillin binding - - - - - - - - - - - - 2.2.1.7 - - - - - - DXS-RXN - - - - - - GO:0008661 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: pyruvate + D-glyceraldehyde 3-phosphate = 1-deoxy-D-xylulose 5-phosphate + CO2. - 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase - 1-deoxy-D-xylulose-5-phosphate synthase - 1-deoxyxylulose-5-phosphate synthase - DOXP synthase - DXP-synthase - GO:0008661 - pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase - - - - - - - - - - - - - 1PFRUCTPHOSN-RXN - - - - - - 2.7.1.56 - - - - - - GO:0008662 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-fructose 1-phosphate = ADP + D-fructose 1,6-bisphosphate.; - 1-phosphofructokinase - ATP:D-fructose-phosphate 6-phosphotransferase - D-fructose-1-phosphate kinase - GO:0008662 - fructose 1-phosphate kinase - fructose-1-phosphate kinase - phosphofructokinase 1 - - - - - - - - - - - - 3.1.4.16 - - - - - - CYCPHOSDIESTER-RXN - - - - - - GO:0008663 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 3'-phosphate.; - 2' 3 '-cyclic AMP phosphodiesterase - 2' 3'-cyclic AMP 2'-phosphohydrolase - 2' 3'-cyclic nucleoside monophosphate phosphodiesterase - 2' 3'-cyclic nucleotidase - 2' 3'-cyclic nucleotide phosphohydrolase - 2',3'-cyclic-nucleotide 2'-phosphodiesterase - 2':3'-cyclic nucleotide phosphodiesterase:3'-nucleotidase - 2':3'-cyclic phosphodiesterase - GO:0008663 - cyclic 2' 3'-nucleotide 2'-phosphodiesterase - cyclic 2' 3'-nucleotide phosphodiesterase - cyclic phosphodiesterase:3'-nucleotidase - nucleoside-2' 3'-cyclic-phosphate 3'-nucleotidohydrolase - ribonucleoside 2' 3'-cyclic phosphate diesterase - - - - - - - - - - - - 6.5.1.- - - - - - - GO:0008664 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the formation of a phosphodiester bond between the 2'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. - 2'-5' RNA ligase - 2'-5'-RNA ligase - GO:0008664 - - - - - - - - - - - - 1.3.1.28 - - - - - - DHBDEHYD-RXN - - - - - - GO:0008667 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2,3-dihydro-2,3-dihydroxybenzoate + NAD+ = 2,3-dihydroxybenzoate + NADH + H+. - 2 3-DHB dehydrogenase - 2 3-dihydro-2 3-dihydroxybenzoate:NAD+ oxidoreductase - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase - GO:0008667 - - - - - - - - - - - - 2.7.7.58 - - - - - - DHBAMPLIG-RXN - - - - - - GO:0008668 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 2,3-dihydroxybenzoate = diphosphate + (2,3-dihydroxybenzoyl)adenylate. - (2,3-dihydroxybenzoyl)adenylate synthase - 2 3-dihydroxybenzoate-AMP ligase - ATP:2 3-dihydroxybenzoate adenylyltransferase - GO:0008668 - - - - - - - - - - - - 1.3.1.34 - - - - - - DIENOYLCOAREDUCT-RXN - - - - - - GO:0008670 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: trans-2,3-didehydroacyl-CoA + NADP+ = trans,trans-2,3,4,5-tetradehydroacyl-CoA + NADPH + H+. - 2,4-dienoyl-CoA reductase (NADPH) - 4-enoyl coenzyme A reductase - 4-enoyl-CoA reductase - GO:0008670 - trans-2 3-didehydroacyl-CoA:NADP+ 4-oxidoreductase - - - - - - - - - - - - - - 2.7.1.45 - - - - - - DEOXYGLUCONOKIN-RXN - - - - - - GO:0008673 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 2-dehydro-3-deoxy-D-gluconate = ADP + beta-L-arabinose 1-phosphate. - 2-dehydro-3-deoxygluconokinase - 2-keto-3-deoxy-D-gluconic acid kinase - 2-keto-3-deoxygluconate kinase - 2-keto-3-deoxygluconokinase - 3-deoxy-2-oxo-D-gluconate kinase - ATP:2-dehydro-3-deoxy-D-gluconate 6-phosphotransferase - GO:0008673 - KDG kinase - ketodeoxygluconokinase - - - - - - - - - - - - - 4.1.2.14 - - - - - - GO:0008675 - - - - - - KDPGALDOL-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate 6-phosphate = pyruvate + D-glyceraldehyde 3-phosphate. - 2-dehydro-3-deoxy-D-gluconate-6-phosphate D-glyceraldehyde-3-phosphate-lyase - 2-dehydro-3-deoxy-phosphogluconate aldolase - 2-keto-3-deoxy-6-phosphogluconate aldolase - 2-keto-3-deoxy-6-phosphogluconic aldolase - 2-keto-3-deoxygluconate-6-P-aldolase - 2-keto-3-deoxygluconate-6-phosphate aldolase - 2-oxo-3-deoxy-6-phosphogluconate aldolase - 6-phospho-2-keto-3-deoxygluconate aldolase - GO:0008675 - KDPG aldolase - KDPG-aldolase - ODPG aldolase - phospho-2-dehydro-3-deoxygluconate aldolase - phospho-2-keto-3-deoxygluconate aldolase - phospho-2-keto-3-deoxygluconic aldolase - - - - - - - - - - - - - 1.1.1.169 - - - - - - 2-DEHYDROPANTOATE-REDUCT-RXN - - - - - - GO:0008677 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R)-pantoate + NADP+ = 2-dehydropantoate + NADPH + H+. - 2-dehydropantoate 2-reductase - 2-ketopantoate reductase - 2-ketopantoic acid reductase - 2-oxidoreductase - 2-oxopantoate reductase - GO:0008677 - KPA reductase - ketopantoate reductase - ketopantoic acid reductase - - - - - - - - - - - - - 1.1.1.125 - - - - - - GO:0008678 - - - - - - KDUD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-deoxy-D-gluconate + NAD+ = 3-dehydro-2-deoxy-D-gluconate + NADH + H+. - 2-deoxy-D-gluconate 3-dehydrogenase - 2-deoxy-D-gluconate:NAD+ 3-oxidoreductase - 2-deoxygluconate dehydrogenase - 2-keto-3-deoxygluconate oxidoreductase - GO:0008678 - - - - - - - - - - - - 4.6.1.12 - - - - - - GO:0008685 - - - - - - RXN0-302 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + CMP. - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase - CMP-lyase - GO:0008685 - MECDP-synthase - MECP synthase - - - - - - - - - - - - 4.1.99.12 - - - - - - DIOHBUTANONEPSYN-RXN - - - - - - GO:0008686 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ribulose-5-phosphate = 3,4-dihydroxy-2-butanone-4-phosphate + formate. - 3,4-dihydroxy-2-butanone-4-phosphate synthase - GO:0008686 - - - - - - - - - - - - - 1.1.1.157 - - - - - - 3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN - - - - - - GO:0008691 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-3-hydroxybutanoyl-CoA + NADP+ = 3-acetoacetyl-CoA + NADPH + H+. - 3-hydroxybutyryl-CoA dehydrogenase - BHBD - GO:0008691 - beta-hydroxybutyryl coenzyme A dehydrogenase - beta-hydroxybutyryl-CoA dehydrogenase - dehydrogenase - dehydrogenase L-3-hydroxybutyryl coenzyme A - oxidoreductase - - - - - - - - - - - - - 4.1.3.38 - - - - - - ADCLY-RXN - - - - - - GO:0008696 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4-amino-4-deoxychorismate = p-aminobenzoate + pyruvate. - 4-amino-4-deoxychorismate lyase - 4-amino-4-deoxychorismate pyruvate-lyase - ADC lyase - GO:0008696 - aminodeoxychorismate lyase - enzyme X - p-aminobenzoate synthetase - para-aminobenzoic acid synthase - - - - - - - - - - - - - 5.3.1.17 - - - - - - 5.3.1.17-RXN - - - - - - GO:0008697 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4-deoxy-L-threo-5-hexosulose uronate = 3-deoxy-D-glycero-2,5-hexodiulosonate. - 4-deoxy-L-threo-5-hexosulose-uronate aldose-ketose-isomerase - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase - 4-deoxy-L-threo-5-hexulose uronate isomerase - 5-keto-4-deoxyuronate isomerase - GO:0008697 - - - - - - - - - - - - - - 4.1.3.16 - - - - - - 4OH2OXOGLUTARALDOL-RXN - - - - - - GO:0008700 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate. - 2-keto-4-hydroxybutyrate aldolase - 2-keto-4-hydroxyglutarate aldolase - 2-keto-4-hydroxyglutaric aldolase - 2-oxo-4-hydroxyglutarate aldolase - 2-oxo-4-hydroxyglutaric aldolase - 4-hydroxy-2-ketoglutarate aldolase - 4-hydroxy-2-ketoglutaric aldolase - 4-hydroxy-2-oxoglutarate aldolase - 4-hydroxy-2-oxoglutarate glyoxylate-lyase - DL-4-hydroxy-2-ketoglutarate aldolase - GO:0008700 - KHG-aldolase - hydroxyketoglutarate aldolase - hydroxyketoglutaric aldolase - - - - - - - - - - - - - 1.1.1.193 - - - - - - GO:0008703 - - - - - - RIBOFLAVINSYNREDUC-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-amino-6-(5-phosphoribitylamino)uracil + NADP+ = 5-amino-6-(5-phosphoribosylamino)uracil + NADPH + H+. - 1'-oxidoreductase - 5-amino-6-(5-phosphoribosylamino)uracil reductase - GO:0008703 - aminodioxyphosphoribosylaminopyrimidine reductase - reductase - - - - - - - - - - - - 3.2.1.86 - - - - - - 6-PHOSPHO-BETA-GLUCOSIDASE-RXN - - - - - - GO:0008706 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 6-phospho-beta-D-glucoside-(1,4)-D-glucose + H2O = D-glucose 6-phosphate + glucose. - 6-phospho-beta-glucosidase - GO:0008706 - glucohydrolase - phospho-beta-glucosidase - phospho-beta-glucosidase A - phosphocellobiase - - - - - - - - - - - - - 2.3.1.47 - - - - - - 7KAPSYN-RXN - - - - - - GO:0008710 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 6-carboxyhexanoyl-CoA + L-alanine = 8-amino-7-oxononanoate + CoA + CO2. - 6-carboxyhexanoyl-CoA:L-alanine C-carboxyhexanoyltransferase - 7-KAP synthetase - 7-keto-8-amino-pelargonic acid synthetase - 7-keto-8-aminopelargonic acid synthetase - 7-keto-8-aminopelargonic synthetase - 8-amino-7-ketopelargonate synthase - 8-amino-7-oxononanoate synthase - 8-amino-7-oxopelargonate synthase - AONS - GO:0008710 - - - - - - - - - - - - - 6.3.2.4 - - - - - - DALADALALIG-RXN - - - - - - GO:0008716 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. - D-Ala-D-Ala synthetase - D-alanine-D-alanine ligase - D-alanine:D-alanine ligase - D-alanyl-D-alanine synthetase - D-alanylalanine synthetase - GO:0008716 - alanine:alanine ligase - alanylalanine synthetase - - - - - - - - - - - - 4.3.1.18 - - - - - - DSERDEAM-RXN - - - - - - GO:0008721 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-serine = pyruvate + NH3. - D-hydroxy amino acid dehydratase - D-hydroxyaminoacid dehydratase - D-serine ammonia-lyase - D-serine deaminase - D-serine dehydrase - D-serine dehydratase - D-serine hydro-lyase - D-serine hydrolase - GO:0008721 - - - - - - - - - - - - - 1.14.14.5 - - - - - - GO:0008726 - - - - - - RXN0-280 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: an alkanesulfonate + O2 + FMNH2 = an aldehyde + SO3(2-) (sulfite) + H2O + FMN. - FMNH2-dependent aliphatic sulfonate monooxygenase - GO:0008726 - SsuD - aliphatic sulfonate monooxygenase - alkanesulfonate monooxygenase - alkanesulfonate reduced-FMN:oxygen oxidoreductase - alkanesulphonate monooxygenase - sulfate starvation-induced protein 6 - - - - - - - - - - - - 2.7.6.5 - - - - - - GO:0008728 - - - - - - GTPPYPHOSKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate.; - ATP-GTP 3'-diphosphotransferase - ATP:GTP 3'-diphosphotransferase - GO:0008728 - GPSI - GPSII - GTP diphosphokinase - GTP pyrophosphokinase - guanosine 3' 5'-polyphosphate synthase - guanosine 5' 3'-polyphosphate synthetase - guanosine pentaphosphate synthetase - ppGpp synthetase I - stringent factor - synthetase I - synthetase II - - - - - - - - - - - - - 5.3.1.4 - - - - - - ARABISOM-RXN - - - - - - GO:0008733 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-arabinose = L-ribulose. - GO:0008733 - L-arabinose aldose-ketose-isomerase - L-arabinose isomerase - L-arabinose ketol-isomerase - - - - - - - - - - - - 1.4.3.16 - - - - - - GO:0008734 - - - - - - L-ASPARTATE-OXID-RXN - - - - - - RXN-9772 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate + H2O + O2 = oxaloacetate + NH3 + H2O2. - GO:0008734 - L-aspartate oxidase - L-aspartate:oxygen oxidoreductase - - - - - - - - - - - - - 5.3.1.14 - - - - - - GO:0008740 - - - - - - RHAMNISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-rhamnose = L-rhamnulose. - GO:0008740 - L-rhamnose aldose-ketose-isomerase - L-rhamnose isomerase - L-rhamnose ketol-isomerase - rhamnose isomerase - - - - - - - - - - - - - - 2.7.1.16 - - - - - - GO:0008741 - - - - - - RIBULOKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. - 5-phosphotransferase - GO:0008741 - L-ribulokinase - ribulokinase - - - - - - - - - - - - - 5.1.3.4 - - - - - - GO:0008742 - - - - - - RIBULPEPIM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-ribulose 5-phosphate = D-xylose 5-phosphate. - AraD - GO:0008742 - L-Ru5P - L-ribulose 5-phosphate 4-epimerase - L-ribulose-5-phosphate 4-epimerase - L-ribulose-phosphate 4-epimerase - L-ru5P - phosphoribulose isomerase - ribulose phosphate 4-epimerase - - - - - - - - - - - - - 1.1.1.103 - - - - - - GO:0008743 - - - - - - THREODEHYD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-threonine + NAD+ = L-2-amino-3-oxobutanoate + NADH + H+. - GO:0008743 - L-threonine 3-dehydrogenase - L-threonine dehydrogenase - L-threonine:NAD+ oxidoreductase - threonine 3-dehydrogenase - threonine dehydrogenase - - - - - - - - - - - - - 3.5.1.28 - - - - - - 3.5.1.28-RXN - - - - - - GO:0008745 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides. - GO:0008745 - N-acetylmuramic acid L-alanine amidase - N-acetylmuramoyl-L-alanine amidase - N-acetylmuramoyl-L-alanine amidase type I - N-acetylmuramoyl-L-alanine amidase type II - N-acetylmuramyl-L-alanine amidase - N-acetylmuramylalanine amidase - N-acylmuramyl-L-alanine amidase - acetylmuramoyl-alanine amidase - acetylmuramyl-L-alanine amidase - acetylmuramyl-alanine amidase - murein hydrolase - peptidoglycan amidohydrolase - - - - - - - - - - - - 1.5.1.29 - - - - - - FMNREDUCT-RXN - - - - - - GO:0008752 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+.; - FMN reductase - GO:0008752 - SsuE - dehydrogenase - flavin mononucleotide reductase - flavine mononucleotide reductase - oxidoreductase - reductase - riboflavin mononucleotide reductase - riboflavine mononucleotide reductase - - - - - - - - - - - - 6.2.1.26 - - - - - - GO:0008756 - - - - - - O-SUCCINYLBENZOATE-COA-LIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + O-succinylbenzoate + CoA = AMP + diphosphate + O-succinylbenzoyl-CoA. - 2-succinylbenzoate:CoA ligase - GO:0008756 - OSB-CoA synthetase - o-succinylbenzoate-CoA ligase - o-succinylbenzoate:CoA ligase - o-succinylbenzoyl-CoA synthetase - o-succinylbenzoyl-coenzyme A synthetase - osb-CoA synthetase - - - - - - - - - - - - - GO:0008757 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. - GO:0008757 - S-adenosyl methionine-dependent methyltransferase - S-adenosylmethionine-dependent methyltransferase - SAM-dependent methyltransferase - - - - - - - - - - - - - 2.5.1.7 - - - - - - GO:0008760 - - - - - - UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine. - GO:0008760 - MurA transferase - UDP-N-acetylglucosamine 1-carboxyvinyl-transferase - UDP-N-acetylglucosamine 1-carboxyvinyltransferase - UDP-N-acetylglucosamine enoylpyruvyltransferase - enoylpyruvate transferase - phosphoenolpyruvate-UDP-acetylglucosamine-3-enolpyruvyltransferase - phosphoenolpyruvate:UDP-2-acetamido-2-deoxy-D-glucose 2-enoyl-1-carboxyethyltransferase - phosphoenolpyruvate:UDP-N-acetyl-D-glucosamine 1-carboxyvinyltransferase - phosphoenolpyruvate:uridine diphosphate N-acetylglucosamine enolpyruvyltransferase - phosphoenolpyruvate:uridine-5'-diphospho-N-acetyl-2-amino-2-deoxyglucose 3-enolpyruvyltransferase - phosphopyruvate-uridine diphosphoacetylglucosamine pyruvatetransferase - pyruvate-UDP-acetylglucosamine transferase - pyruvate-uridine diphospho-N-acetyl-glucosamine transferase - pyruvate-uridine diphospho-N-acetylglucosamine transferase - pyruvic-uridine diphospho-N-acetylglucosaminyltransferase - - - - - - - - - - - - - 5.1.3.14 - - - - - - GO:0008761 - - - - - - UDPGLCNACEPIM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine. - GO:0008761 - UDP-GlcNAc-2-epimerase - UDP-N-acetyl-D-glucosamine 2-epimerase - UDP-N-acetylglucosamine 2'-epimerase - UDP-N-acetylglucosamine 2-epimerase - uridine diphosphate-N-acetylglucosamine-2'-epimerase - uridine diphospho-N-acetylglucosamine 2'-epimerase - uridine diphosphoacetylglucosamine 2'-epimerase - - - - - - - - - - - - - 1.1.1.158 - - - - - - GO:0008762 - - - - - - UDPNACETYLMURAMATEDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+. - GO:0008762 - MurB reductase - UDP-GlcNAc-enoylpyruvate reductase - UDP-N-acetylenolpyruvoylglucosamine reductase - UDP-N-acetylglucosamine-enoylpyruvate reductase - UDP-N-acetylmuramate dehydrogenase - UDP-N-acetylmuramate:NADP+ oxidoreductase - uridine diphospho-N-acetylglucosamine-enolpyruvate reductase - uridine diphosphoacetylpyruvoylglucosamine reductase - uridine-5'-diphospho-N-acetyl-2-amino-2-deoxy-3-O-lactylglucose:NADP-oxidoreductase - - - - - - - - - - - - - 6.3.2.8 - - - - - - GO:0008763 - - - - - - UDP-NACMUR-ALA-LIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl + L-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanine. - GO:0008763 - L-Ala ligase - L-alanine-adding enzyme - MurC synthetase - UDP-MurNAc:L-alanine ligase - UDP-N-acetylmuramate-L-alanine ligase - UDP-N-acetylmuramate:L-alanine ligase - UDP-N-acetylmuramoyl-L-alanine synthetase - UDP-N-acetylmuramoylalanine synthetase - UDP-N-acetylmuramyl:L-alanine ligase - UDP-acetylmuramyl-L-alanine synthetase - UDPMurNAc-L-alanine synthetase - alanine-adding enzyme - uridine 5'-diphosphate-N-acetylmuramyl-L-alanine synthetase - uridine diphosphate N-acetylmuramate:L-alanine ligase - uridine diphospho-N-acetylmuramoylalanine synthetase - uridine-diphosphate-N-acetylmuramate:L-alanine ligase - - - - - - - - - - - - - 6.3.2.9 - - - - - - GO:0008764 - - - - - - UDP-NACMURALA-GLU-LIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanine + D-glutamate = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. - D-glutamate ligase - D-glutamate-adding enzyme - GO:0008764 - MurD synthetase - UDP-Mur-NAC-L-Ala:D-Glu ligase - UDP-N-acetylmuramoyl-L-alanine:glutamate ligase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase - UDP-N-acetylmuramoylalanine-D-glutamate ligase - uridine diphospho-N-acetylmuramoylalanyl-D-glutamate synthetase - - - - - - - - - - - - - 6.3.2.13 - - - - - - GO:0008765 - - - - - - UDP-NACMURALGLDAPLIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + meso-2,6-diaminoheptanedioate = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate. - 6-diaminoheptanedioate gamma-ligase - GO:0008765 - MurE synthetase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2 6-diamino-heptanedioate ligase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 6-diaminopimelate synthetase - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase - UDP-N-acetylmuramyl-tripeptide synthetase - - - - - - - - - - - - - 6.3.2.- - - - - - - GO:0008766 - - - - - - UDP-NACMURALGLDAPAALIG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine. - GO:0008766 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase - - - - - - - - - - - - - - 2.7.2.1 - - - - - - ACETATEKIN-RXN - - - - - - GO:0008776 - - - - - - e0031 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + acetate = ADP + acetyl phosphate. - AK - ATP:acetate phosphotransferase - AckA - GO:0008776 - acetate kinase - acetic kinase - acetokinase - - - - - - - - - - - - - 3.2.2.9 - - - - - - ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN - - - - - - GO:0008782 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenine + S-D-ribosyl-L-homocysteine. - 5'-methyladenosine nucleosidase - AdoHcy MTA nucleosidase - GO:0008782 - S-adenosyl-L-homocysteine homocysteinylribohydrolase - S-adenosylhomocysteine 5'-methylthioadenosine nucleosidase - S-adenosylhomocysteine hydrolase - S-adenosylhomocysteine nucleosidase - adenosylhomocysteine nucleosidase - - - - - - - - - - - - - 26116 "agmatinase activity" - - - - - - 3.5.3.11 - - - - - - AGMATIN-RXN - - - - - - GO:0008783 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: agmatine + H2O = putrescine + urea. - GO:0008783 - SpeB - agmatinase - agmatine amidinohydrolase - agmatine ureohydrolase - - - - - - - - - - - - 5.1.1.1 - - - - - - ALARACECAT-RXN - - - - - - GO:0008784 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-alanine = D-alanine. - GO:0008784 - L-alanine racemase - alanine racemase - - - - - - - - - - - - 3.2.1.93 - - - - - - GO:0008788 - - - - - - TRE6PHYDRO-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: alpha,alpha-trehalose 6-phosphate + H2O = D-glucose + D-glucose 6-phosphate. - GO:0008788 - alpha alpha-trehalose-6-phosphate phosphoglucohydrolase - alpha,alpha-phosphotrehalase - phosphotrehalase - trehalose-6-phosphate hydrolase - - - - - - - - - - - - - 4.2.1.7 - - - - - - ALTRODEHYDRAT-RXN - - - - - - GO:0008789 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-altronate = 2-dehydro-3-deoxy-D-gluconate + H2O. - D-altronate hydro-lyase - GO:0008789 - altronate dehydratase - - - - - - - - - - - - - 26125 "arginine decarboxylase activity" - - - - - - 4.1.1.19 - - - - - - ARGDECARBOX-RXN - - - - - - GO:0008792 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-arginine = agmatine + CO2. - GO:0008792 - L-arginine carboxy-lyase - SpeA - arginine decarboxylase - - - - - - - - - - - - 6.3.1.5 - - - - - - GO:0008749 - - - - - - GO:0008795 - - - - - - GO:0016965 - - - - - - NAD-SYNTH-NH3-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+. - GO:0008795 - NAD synthase - NAD synthetase - NAD+ synthase - NAD+ synthetase - deamido-NAD+:ammonia ligase - diphosphopyridine nucleotide synthetase - nicotinamide adenine dinucleotide synthetase - synthetase - - - - - - - - - - - - 4.3.1.1 - - - - - - ASPARTASE-RXN - - - - - - GO:0008797 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate = fumarate + NH3. - GO:0008797 - L-aspartase - L-aspartate ammonia-lyase - aspartase - aspartate ammonia-lyase - fumaric aminase - - - - - - - - - - - - - 3.5.2.6 - - - - - - BETA-LACTAMASE-RXN - - - - - - GO:0008800 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.; - GO:0008800 - ampicillinase - beta-lactam hydrolase - beta-lactamase - beta-lactamase A B C - beta-lactamase AME I - beta-lactamase I-III - cephalosporin-beta-lactamase - exopenicillinase - neutrapen - penicillin amido-beta-lactamhydrolase - penicillin beta-lactamase - penicillinase I II - - - - - - - - - - - - - 5.4.2.6 - - - - - - BETA-PHOSPHOGLUCOMUTASE-RXN - - - - - - GO:0008801 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: beta-D-glucose 1-phosphate = beta-D-glucose 6-phosphate. - GO:0008801 - beta-D-glucose 1 6-phosphomutase - beta-phosphoglucomutase - - - - - - - - - - - - - 1.2.1.8 - - - - - - BADH-RXN - - - - - - GO:0008802 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+.; - BADH - BetB - GO:0008802 - betaine aldehyde dehydrogenase - betaine aldehyde oxidase - betaine-aldehyde dehydrogenase - betaine-aldehyde:NAD+ oxidoreductase - - - - - - - - - - - - - 3.2.1.4 - - - - - - GO:0008810 - - - - - - RXN-2043 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. - 1 4-glucanohydrolase - 9.5 cellulase - GO:0008810 - alkali cellulase - avicelase - beta-1 4-endoglucan hydrolase - beta-1 4-glucanase - carboxymethyl cellulase - celluase A - celludextrinase - cellulase - cellulase A 3 - cellulosin AP - endo-1 4-beta-D-glucanase - endo-1 4-beta-D-glucanohydrolase - endo-1 4-beta-glucanase - endoglucanase - endoglucanase D - pancellase SS - - - - - - - - - - - - - 2.5.1.17 - - - - - - COBALADENOSYLTRANS-RXN - - - - - - GO:0008817 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + cob(I)alamin + H2O = phosphate + diphosphate + adenosylcobalamin. - ATP:corrinoid adenosyltransferase - Co-beta-adenosyltransferase - CobA - GO:0008817 - acid-a c-diamide cobeta-adenosyltransferase - adenosyltransferase - cob(I)yrinic acid a,c-diamide adenosyltransferase - cobeta-adenosyltransferase - vitamin B12s adenosyltransferase - - - - - - - - - - - - - 1.10.3.- - - - - - - GO:0008827 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ubiquinol + O2 = ubiquinone + 2 H2R; cytochrome O is the electron acceptor. - GO:0008827 - cytochrome o ubiquinol oxidase - - - - - - - - - - - - - 5.1.3.13 - - - - - - DTDPDEHYDRHAMEPIM-RXN - - - - - - GO:0008830 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: dTDP-4-dehydro-6-deoxy-D-glucose = dTDP-4-dehydro-6-deoxy-L-mannose.; - GO:0008830 - TDP-4-keto-L-rhamnose-3 5-epimerase - TDP-4-ketorhamnose 3 5-epimerase - dTDP-4-dehydro-6-deoxy-D-glucose 3 5-epimerase - dTDP-4-dehydrorhamnose 3,5-epimerase - dTDP-4-keto-6-deoxyglucose 3 5-epimerase - dTDP-L-rhamnose synthetase - thymidine diphospho-4-ketorhamnose 3 5-epimerase - - - - - - - - - - - - - 1.1.1.133 - - - - - - DTDPDEHYRHAMREDUCT-RXN - - - - - - GO:0008831 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH + H+. - GO:0008831 - TDP-4-keto-rhamnose reductase - dTDP-4-dehydrorhamnose reductase - dTDP-4-keto-L-rhamnose reductase - dTDP-4-ketorhamnose reductase - dTDP-6-deoxy-L-mannose dehydrogenase - dTDP-6-deoxy-L-mannose:NADP+ 4-oxidoreductase - reductase thymidine diphospho-4-ketorhamnose - thymidine diphospho-4-ketorhamnose reductase - - - - - - - - - - - - - 3.1.21.2 - - - - - - 3.1.21.2-RXN - - - - - - GO:0008833 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage to 5'-phosphooligonucleotide end-products. - DNA-adenine-transferase - E. coli endonuclease IV - Escherichia coli endonuclease II - GO:0008833 - deoxriboendonuclease - deoxyribonuclease IV - deoxyribonuclease IV (phage-T4-induced) - endodeoxyribonuclease IV - endonuclease II - endonuclease IV - redoxyendonuclease - - - - - - - - - - - - - 2.5.1.31 - - - - - - GO:0008834 - - - - - - RXN-8999 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: di-trans-poly-cis-decaprenyl diphosphate + isopentenyl diphosphate = diphosphate + di-trans-poly-cis-undecaprenyl diphosphate. - GO:0008834 - UPP synthetase - bactoprenyl-diphosphate synthase - di-trans poly-cis-decaprenyl-diphosphate:isopentenyl-diphosphate undecaprenylcistransferase - di-trans poly-cis-undecaprenyl-diphosphate synthase - di-trans,poly-cis-decaprenylcistransferase - undecaprenyl diphosphate synthase - undecaprenyl diphosphate synthetase - undecaprenyl pyrophosphate synthase - undecaprenyl pyrophosphate synthetase - undecaprenyl-diphosphate synthase - - - - - - - - - - - - 3.5.4.26 - - - - - - GO:0008485 - - - - - - GO:0008835 - - - - - - RIBOFLAVINSYNDEAM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine + H2O = 5-amino-6-(5-phosphoribosylamino)uracil + NH3. - 2 2-aminohydrolase - 2 5'-phosphate deaminase - GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase - - - - - - - - - - - - - 4.1.1.20 - - - - - - DIAMINOPIMDECARB-RXN - - - - - - GO:0008836 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: meso-2,6-diaminoheptanedioate = L-lysine + CO2. - DAP decarboxylase - DAP-decarboxylase - GO:0008836 - diaminopimelate decarboxylase - diaminopimelic acid decarboxylase - meso-2 6-diaminoheptanedioate carboxy-lyase - meso-diaminopimelate decarboxylase - - - - - - - - - - - - 5.1.1.7 - - - - - - DIAMINOPIMEPIM-RXN - - - - - - GO:0008837 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. - GO:0008837 - LL-2 6-diaminoheptanedioate 2-epimerase - diaminopimelate epimerase - - - - - - - - - - - - 1.3.1.26 - - - - - - DIHYDROPICRED-RXN - - - - - - GO:0008839 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2,3,4,5-tetrahydrodipicolinate + NADP+ = 2,3-dihydrodipicolinate + NADPH + H+.; - 2 3 4 oxidoreductase - GO:0008839 - dihydrodipicolinate reductase - dihydrodipicolinic acid reductase - - - - - - - - - - - - - 4.2.1.52 - - - - - - DIHYDRODIPICSYN-RXN - - - - - - GO:0008840 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-aspartate-4-semialdehyde + pyruvate = dihydrodipicolinate + 2 H2O. - DHDPS - GO:0008840 - L-aspartate-4-semialdehyde hydro-lyase - L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing; 3-dihydropyridine-2 6-dicarboxylate-forming] - dihydrodipicolinate synthase - dihydrodipicolinate synthetase - dihydrodipicolinic acid synthase - dihydropicolinate synthetase - - - - - - - - - - - - 3.1.11.2 - - - - - - 3.1.11.2-RXN - - - - - - GO:0008853 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the degradation of double-stranded DNA. It acts progressively in a 3' to 5' direction, releasing 5'-phosphomononucleotides. - E. coli exonuclease III - Escherichia coli exonuclease III - GO:0008853 - endoribonuclease III - exodeoxyribonuclease III - exonuclease III - - - - - - - - - - - - 3.1.11.6 - - - - - - 3.1.11.6-RXN - - - - - - GO:0008855 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield 5'-phosphomononucleotides. - E. coli exonuclease VII - Escherichia coli exonuclease VII - GO:0008855 - endodeoxyribonuclease VII - exodeoxyribonuclease VII - exonuclease VII - - - - - - - - - - - - - 1.2.1.2 - - - - - - FORMATEDEHYDROG-RXN - - - - - - GO:0008863 - - - - - - GO:0018476 - - - - - - e0080 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: formate + NAD+ = CO2 + NADH + H+. - FDH I - FDH II - GO:0008863 - N-FDH - NAD-dependent formate dehydrogenase - NAD-formate dehydrogenase - NAD-linked formate dehydrogenase - formate benzyl-viologen oxidoreductase - formate dehydrogenase - formate hydrogenlyase - formate-NAD oxidoreductase - formate:NAD+ oxidoreductase - formic acid dehydrogenase - formic hydrogen-lyase - - - - - - - - - - - - - 3.5.1.10 - - - - - - FORMYLTHFDEFORMYL-RXN - - - - - - GO:0008864 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 10-formyltetrahydrofolate + H2O = formate + tetrahydrofolate. - 10-formyltetrahydrofolate amidohydrolase - GO:0008864 - formyltetrahydrofolate deformylase - formyltetrahydrofolate hydrolase - hydrolase - - - - - - - - - - - - 2.7.1.4 - - - - - - FRUCTOKINASE-RXN - - - - - - GO:0008865 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate. - ATP:D-fructose 6-phosphotransferase - D-fructokinase - GO:0008865 - activity - fructokinase - - - - - - - - - - - - - 4.2.1.42 - - - - - - GALACTARDEHYDRA-RXN - - - - - - GO:0008867 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-galactarate = 5-dehydro-4-deoxy-D-glucarate + H2O.; - D-galactarate hydro-lyase - GO:0008867 - galactarate dehydratase - - - - - - - - - - - - - 4.2.1.40 - - - - - - GLUCARDEHYDRA-RXN - - - - - - GO:0008872 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O. - D-glucarate dehydratase - D-glucarate hydro-lyase - GO:0008872 - glucarate dehydratase - - - - - - - - - - - - 1.1.1.215 - - - - - - 1.1.1.215-RXN - - - - - - GO:0008873 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-gluconate + NADP+ = 2-dehydro-D-gluconate + NADPH + H+. - 2-keto-D-gluconate reductase - 2-ketogluconate reductase - D-gluconate:NADP+ oxidoreductase - GO:0008873 - gluconate 2-dehydrogenase - - - - - - - - - - - - 2.7.7.27 - - - - - - GLUC1PADENYLTRANS-RXN - - - - - - GO:0008878 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose. - ADGase - ADP glucose pyrophosphorylase - ADP-glucose diphosphorylase - ADP-glucose pyrophosphorylase - ADP-glucose synthase - ADP-glucose synthetase - ADP:alpha-D-glucose-1-phosphate adenylyltransferase - ADPG pyrophosphorylase - ATP:alpha-D-glucose-1-phosphate adenylyltransferase - ATP:alpha-glucose-1-phosphate adenylyl transferase - GO:0008878 - adenosine diphosphate glucose pyrophosphorylase - adenosine diphosphoglucose pyrophosphorylase - glucose 1-phosphate adenylyltransferase - glucose-1-phosphate adenylyltransferase - - - - - - - - - - - - - 5.3.1.12 - - - - - - GLUCUROISOM-RXN - - - - - - GO:0008880 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucuronate = D-fructuronate. - D-glucuronate aldose-ketose-isomerase - D-glucuronate isomerase - D-glucuronate ketol-isomerase - GO:0008880 - glucuronate isomerase - uronate isomerase - uronic acid isomerase - uronic isomerase - - - - - - - - - - - - 5.1.1.3 - - - - - - GLUTRACE-RXN - - - - - - GO:0008881 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamate = D-glutamate. - GO:0008881 - glutamate racemase - - - - - - - - - - - - - 1.2.1.70 - - - - - - GLUTRNAREDUCT-RXN - - - - - - GO:0008883 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamate 1-semialdehyde + NADP+ + tRNA(Glu) = L-glutamyl-tRNA(Glu) + NADPH + H+. - GO:0008883 - L-glutamate-semialdehyde: NADP+ oxidoreductase - glutamyl-tRNA reductase - - - - - - - - - - - - - - 2.7.1.31 - - - - - - GLY3KIN-RXN - - - - - - GO:0008887 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + (R)-glycerate = ADP + 3-phospho-(R)-glycerate. - 3-phosphotransferase - ATP:D-glycerate 2-phosphotransferase - D-glycerate 3-kinase - D-glycerate kinase - D-glyceric acid kinase - GK - GO:0008887 - glycerate kinase - glycerate-3-kinase - - - - - - - - - - - - - 3.1.4.46 - - - - - - GLYCPDIESTER-RXN - - - - - - GO:0008889 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate. - GO:0008889 - IgD-binding protein D - gene hpd protein - glycerophosphodiester glycerophosphohydrolase - glycerophosphodiester phosphodiesterase - glycerophosphoryl diester phosphodiesterase - - - - - - - - - - - - 2.3.1.29 - - - - - - AKBLIG-RXN - - - - - - GO:0008890 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + glycine = CoA + 2-amino-3-oxobutanoate. - 2-amino-3-ketobutyrate CoA ligase - 2-amino-3-ketobutyrate coenzyme A ligase - 2-amino-3-ketobutyrate-CoA ligase - GO:0008890 - acetyl-CoA:glycine C-acetyltransferase - aminoacetone synthase - glycine C-acetyltransferase - glycine acetyltransferase - - - - - - - - - - - - 26481 "glycolate oxidase activity" - - - - - - GO:0008891 - - - - - - RXN-969 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glycolate + O2 = glyoxylate + H2O2. - GO:0008891 - glycolate oxidase - - - - - - - - - - - - 26482 "guanine deaminase activity" - - - - - - 3.5.4.3 - - - - - - GO:0008892 - - - - - - GUANINE-DEAMINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: guanine + H2O = xanthine + NH3. - GAH - GO:0008892 - guanase - guanine aminase - guanine aminohydrolase - guanine deaminase - - - - - - - - - - - - - 2.7.8.7 - - - - - - 26486 "holo-[acyl-carrier-protein] synthase activity" - - - - - - GO:0008897 - - - - - - GO:0008958 - - - - - - HOLO-ACP-SYNTH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CoA + substrate-serine = adenosine 3',5'-bisphosphate + substrate-serine-4'-phosphopantetheine. The transfer of the 4'-phosphopantetheine (Ppant) co-factor from coenzyme A to the hydroxyl side chain of the serine residue of acyl- or peptidyl-carrier protein (ACP or PCP) to convert them from the apo to the holo form. - 4'-phosphopantetheinyl transferase - 4'-phosphopantetheinyltransferase - ACPS - AcpS - CoA-[4'-phosphopantetheine]:apo-acyl-carrier-protein 4'-pantetheinephosphotransferase - CoA:apo-acyl-carrier-protein pantetheinephosphotransferase - GO:0008897 - L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase - P-pant transferase - PPTase - acyl carrier protein holoprotein synthetase - acyl carrier protein synthase - acyl carrier protein synthetase - alpha-aminoadipate reductase phosphopantetheinyl transferase - alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase - alphaaminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase - coenzyme A:fatty acid synthetase apoenzyme 4'-phosphopantetheine transferase - holo-ACP synthase - holo-ACP synthetase - holo-[acyl-carrier-protein] synthase - holo-[peptidyl-carrier protein] synthase - holo-acyl-carrier-protein synthase - holosynthase - phosphopantetheinyltransferase - - - - - - - - - - - - - 2.1.1.10 - - - - - - GO:0008898 - - - - - - HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + L-homocysteine = S-adenosyl-L-homocysteine + L-methionine. - GO:0008898 - L-homocysteine S-methyltransferase - S-adenosyl-L-methionine:L-homocysteine S-methyltransferase - S-adenosyl-L-methionine:L-homocysteine methyltransferase - S-adenosylmethionine homocysteine transmethylase - S-adenosylmethionine-homocysteine transmethylase - S-adenosylmethionine:homocysteine methyltransferase - S-methylmethionine homocysteine transmethylase - adenosylmethionine transmethylase - adenosylmethionine:homocysteine methyltransferase - homocysteine S-methyltransferase - homocysteine methyltransferase - homocysteine transmethylase - methylmethionine:homocysteine methyltransferase - - - - - - - - - - - - 2.3.1.46 - - - - - - GO:0008899 - - - - - - HOMSUCTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. - GO:0008899 - homoserine O-succinyltransferase - homoserine O-transsuccinylase - homoserine succinyltransferase - succinyl-CoA:L-homoserine O-succinyltransferase - - - - - - - - - - - - - - 2.7.1.49 - - - - - - GO:0008902 - - - - - - OHMETPYRKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 4-amino-2-methyl-5-hydroxymethylpyrimidine = ADP + 4-amino-2-methyl-5-phosphomethylpyrimidine. - ATP:4-amino-5-hydroxymethyl-2-methylpyrimidine 5-phosphotransferase - GO:0008902 - hydroxymethylpyrimidine kinase - - - - - - - - - - - - 3.3.2.1 - - - - - - GO:0008908 - - - - - - ISOCHORMAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: isochorismate + H2O = 2,3-dihydro-2,3-dihydroxybenzoate + pyruvate. - 2 3 dihydro-2 3 dihydroxybenzoate synthase - 2 3-dihydro-2 3-dihydroxybenzoate synthase - 2 3-dihydroxy-2 3-dihydrobenzoate synthase - 2 3-dihydroxy-2 3-dihydrobenzoic synthase - GO:0008908 - isochorismatase - isochorismate pyruvate-hydrolase - - - - - - - - - - - - 5.4.4.2 - - - - - - GO:0008909 - - - - - - ISOCHORSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: chorismate = isochorismate. - GO:0008909 - isochorismate hydroxymutase - isochorismate mutase - isochorismate synthase - isochorismate synthetase - - - - - - - - - - - - 2.3.1.79 - - - - - - GO:0008925 - - - - - - MALTACETYLTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + maltose = CoA + acetyl-maltose. - GO:0008925 - acetyl-CoA:maltose O-acetyltransferase - maltose O-acetyltransferase - maltose transacetylase - - - - - - - - - - - - - 1.1.1.17 - - - - - - GO:0008926 - - - - - - MANNPDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-mannitol 1-phosphate + NAD+ = D-fructose 6-phosphate + NADH + H+. - GO:0008926 - mannitol-1-phosphate 5-dehydrogenase - - - - - - - - - - - - - 4.2.1.8 - - - - - - GO:0008927 - - - - - - MANNONDEHYDRAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-mannonate = 2-dehydro-3-deoxy-D-gluconate + H2O. - D-mannonate hydro-lyase - D-mannonate hydrolyase - GO:0008927 - altronate hydrolase - altronic hydro-lyase - mannonate dehydratase - mannonate hydrolyase - mannonic hydrolase - - - - - - - - - - - - - 4.2.3.3 - - - - - - GO:0008929 - - - - - - METHGLYSYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glycerone phosphate = methylglyoxal + phosphate. - GO:0008929 - glycerone-phosphate phospho-lyase - methylglyoxal synthase - methylglyoxal synthetase - - - - - - - - - - - - - 3.2.2.16 - - - - - - GO:0008930 - - - - - - METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: methylthioadenosine + H2O = adenine + 5-methylthio-D-ribose. - 5'-methylthioadenosine nucleosidase - GO:0008930 - MTA nucleosidase - MeSAdo nucleosidase - S-methyl-5'-thioadenosine adeninehyrolase - methylthioadenosine methylthioribohydrolase - methylthioadenosine nucleosidase - - - - - - - - - - - - - 3.1.3.25 - - - - - - GO:0008934 - - - - - - MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: myo-inositol 1-phosphate + H2O = myo-inositol + phosphate. - GO:0008934 - L-myo-inositol-1-phosphate phosphatase - activity - inositol 1-phosphatase - inositol monophosphate phosphatase - inositol phosphatase - inositol-1(or 4)-monophosphatase - inositol-phosphate phosphatase - myo-inositol 1-phosphatase - myo-inositol monophosphatase - myo-inositol-1-phosphatase - myo-inositol-phosphate phosphohydrolase - phosphohydrolase - - - - - - - - - - - - - 4.1.3.36 - - - - - - GO:0008935 - - - - - - NAPHTHOATE-SYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: O-succinylbenzoyl-CoA = 1,4-dihydroxy-2-naphthoate + CoA. - 1 4-dihydroxy-2-naphthoate synthase - DHNA synthetase - GO:0008935 - dihydroxynaphthoate synthase - dihydroxynaphthoic acid synthetase - naphthoate synthase - o-succinylbenzoyl-CoA 1 4-dihydroxy-2-naphthoate-lyase - - - - - - - - - - - - 1.7.99.4 - - - - - - GO:0008940 - - - - - - NITRATREDUCT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NO2- (nitrite) + acceptor = NO3- (nitrate) + reduced acceptor. - GO:0008940 - nitrate reductase - nitrite:acceptor oxidoreductase - oxidoreductase - respiratory nitrate reductase - - - - - - - - - - - - - 1.14.12.17 - - - - - - GO:0008941 - - - - - - R621-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 NO + 2 O2 + NADPH + H+ = 2 NO3- + NADP+. - GO:0008941 - NOD - nitric oxide dioxygenase - nitric oxide oxidoreductase - - - - - - - - - - - - - 1.7.1.4 - - - - - - GO:0008942 - - - - - - NITRITREDUCT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ammonium hydroxide + 3 NAD(P)+ + H2O = NO2(-) (nitrite) + 3 NAD(P)H + 3 H+.; - GO:0008942 - NADH-nitrite oxidoreductase - NADPH-nitrite reductase - assimilatory nitrite reductase - nitrite reductase - nitrite reductase [NAD(P)H] - oxidoreductase - - - - - - - - - - - - - 1.2.1.- - - - - - - GO:0008943 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glyceraldehyde 3-phosphate + (phosphate / H2O) + NAD(P)+ = (3-phospho-D-glyceroyl-phosphate / 3-phospho-D-glycerate) + NAD(P)H + H+. - GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase - - - - - - - - - - - - - 3.5.1.11 - - - - - - GO:0008953 - - - - - - PENICILLIN-AMIDASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: penicillin + H2O = a carboxylate + 6-aminopenicillanate. - GO:0008953 - alpha-acylamino-beta-lactam acylhydrolase - ampicillin acylase - benzylpenicillin acylase - novozym 217 - palmitoleoyl [acyl-carrier protein]-dependent acyltransferase - penicillin acylase - penicillin amidase - penicillin amidohydrolase - semacylase - - - - - - - - - - - - - 2.3.1.8 - - - - - - GO:0008959 - - - - - - PHOSACETYLTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + phosphate = CoA + acetyl phosphate. - GO:0008959 - PTA - acetyl-CoA:phosphate acetyltransferase - phosphate acetyltransferase - phosphoacylase - phosphotransacetylase - - - - - - - - - - - - - GO:0008961 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase - - - - - - - - - - - - - 3.1.3.27 - - - - - - GO:0008962 - - - - - - PGPPHOSPHA-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate. - GO:0008962 - PGP phosphatase - phosphatidylglycerol phosphatase - phosphatidylglycerol phosphate phosphatase - phosphatidylglycerophosphatase - phosphatidylglycerophosphate phosphohydrolase - - - - - - - - - - - - - 2.7.8.13 - - - - - - GO:0008963 - - - - - - PHOSNACMURPENTATRANS-RXN - - - - - - RXN-8975 - - - - - - RXN-9671 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol. - GO:0008963 - MraY transferase - UDP-MurNAc-Ala-gamma-DGlu-Lys-DAla-DAla:undecaprenylphosphate transferase - UDP-MurNAc-Ala-gammaDGlu-Lys-DAla-DAla:undecaprenylphosphate transferase - UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C55-isoprenoid alcohol transferase - UDP-MurNAc-pentapeptide phosphotransferase - alcohol transferase - phospho-MurNAc-pentapeptide transferase - phospho-N-acetylmuramoyl pentapeptide translocase - phospho-N-acetylmuramoyl-pentapeptide-transferase - phospho-NAc-muramoyl-pentapeptide translocase - phosphoacetylmuramoylpentapeptide translocase - phosphoacetylmuramoylpentapeptidetransferase - - - - - - - - - - - - - 2.7.3.9 - - - - - - 2.7.3.9-RXN - - - - - - GO:0008965 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: phosphoenolpyruvate + protein L-histidine = pyruvate + protein N(pi)-phospho-L-histidine. - GO:0008965 - enzyme I of the phosphotransferase system - phosphoenolpyruvate sugar phosphotransferase enzyme I - phosphoenolpyruvate--protein phosphatase - phosphoenolpyruvate-protein phosphotransferase - phosphoenolpyruvate:protein-L-histidine N-pros-phosphotransferase - phosphoenolpyruvate:protein-L-histidine Npi-phosphotransferase - phosphopyruvate--protein factor phosphotransferase - phosphopyruvate--protein phosphotransferase - sugar--PEP phosphotransferase enzyme I - - - - - - - - - - - - - 5.4.2.10 - - - - - - 5.4.2.10-RXN - - - - - - GO:0008966 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glucosamine 1-phosphate = D-glucosamine 6-phosphate.; - D-glucosamine 1 6-phosphomutase - GO:0008966 - alpha-D-glucosamine 1 6-phosphomutase - phosphoglucosamine mutase - - - - - - - - - - - - - 3.1.3.18 - - - - - - GO:0008967 - - - - - - GPH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phosphoglycolate + H2O = glycolate + phosphate. - 2-phosphoglycolate phosphatase - 2-phosphoglycolate phosphohydrolase - GO:0008967 - P-glycolate phosphatase - phosphoglycolate hydrolase - phosphoglycolate phosphatase - phosphoglycollate phosphatase - - - - - - - - - - - - - - 2.7.4.7 - - - - - - GO:0008972 - - - - - - PYRIMSYN3-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine. - ATP:4-amino-2-methyl-5-phosphomethylpyrimidine phosphotransferase - GO:0008972 - hydroxymethylpyrimidine phosphokinase - phosphomethylpyrimidine kinase - - - - - - - - - - - - - 5.4.2.7 - - - - - - GO:0008973 - - - - - - PPENTOMUT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribose 1-phosphate = D-ribose 5-phosphate. - D-ribose 1 5-phosphomutase - GO:0008973 - alpha-D-glucose-1 6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase - alpha-D-ribose 1 5-phosphomutase - deoxyribomutase - deoxyribose phosphomutase - phosphodeoxyribomutase - phosphopentomutase - phosphoribomutase - - - - - - - - - - - - 1.3.1.12 - - - - - - GO:0008977 - - - - - - PREPHENATEDEHYDROG-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: prephenate + NAD+ = 4-hydroxyphenylpyruvate + CO2 + NADH + H+. - GO:0008977 - chorismate mutase--prephenate dehydrogenase - hydroxyphenylpyruvate synthase - prephenate dehydrogenase - prephenate:NAD+ oxidoreductase - - - - - - - - - - - - - - 2.7.1.69 - - - - - - 2.7.1.69-RXN - - - - - - GO:0008982 - - - - - - GO:0015455 - - - - - - GO:0015456 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sugar(out) = protein histidine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport. - GO:0008982 - PEP--sugar phosphotransferase enzyme II - PEP-dependent phosphotransferase enzyme II - PTS permease - PTS transporter - enzyme II of the phosphotransferase system - enzyme IIl4ac - gene bglC RNA formation factors - gene glC proteins - group translocator - phosphoenolpyruvate-sugar phosphotransferase enzyme II - phosphohistidinoprotein-hexose phosphoribosyltransferase - phosphohistidinoprotein-hexose phosphotransferase - phosphoprotein factor-hexose phosophotransferase - phosphotransfer-driven group translocator - phosphotransferase phosphohistidinoprotein-hexose - protein specific or class gene bglC - protein-N(PI)-phosphohistidine-sugar phosphotransferase - protein-Np-phosphohistidine-sugar phosphotransferase - protein-Npi-phospho-L-histidine:sugar N-pros-phosphotransferase - protein-Npi-phospho-L-histidine:sugar Npi-phosphotransferase - protein-Npi-phosphohistidine-sugar phosphotransferase - protein-Npi-phosphohistidine:sugar N-pros-phosphotransferase - ribonucleic acid formation factor gene glC - sucrose phosphotransferase system II - - - - - - - - - - - - - - 2.1.1.80 - - - - - - AA0072 - - - - - - CHER-RXN - - - - - - GO:0008983 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + protein L-glutamate = S-adenosyl-L-homocysteine + protein L-glutamate 5-methyl ester; this reaction is the methylation of peptidyl-L-glutamate to form peptidyl-L-glutamate 5-methyl ester.; - GO:0008983 - MCP methyltransferase I - MCP methyltransferase II - S-adenosyl-L-methionine:protein-L-glutamate O-methyltransferase - S-adenosylmethionine-glutamyl methyltransferase - S-adenosylmethionine:protein-carboxyl O-methyltransferase - activity - methyl-accepting chemotaxis protein O-methyltransferase - methyl-accepting chemotaxis protein methyltransferase II - protein O-methyltransferase - protein carboxyl-O-methyltransferase - protein carboxyl-methylase - protein carboxylmethyltransferase II - protein carboxymethylase - protein carboxymethyltransferase - protein methylase II - protein-glutamate O-methyltransferase - - - - - - - - - - - - 3.1.1.61 - - - - - - AA0072 - - - - - - GO:0008984 - - - - - - MCPMETEST-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein L-glutamate O(5)-methyl ester + H2O = protein L-glutamate + methanol. - CheB methylesterase - GO:0008984 - chemotaxis-specific methylesterase - methyl-accepting chemotaxis protein methyl-esterase - methylesterase CheB - protein-L-glutamate-5-O-methyl-ester acylhydrolase - protein-L-glutamate-O5-methyl-ester acylhydrolase - protein-glutamate methylesterase - - - - - - - - - - - - - GO:0008987 - - - - - - QUINOLINATE-SYNTHA-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: iminoaspartate + dihydroxy-acetone-phosphate = quinolinate + 2 H2O + phosphate. - GO:0008987 - quinolinate synthetase A - - - - - - - - - - - - - - 2.1.1.48 - - - - - - GO:0008988 - - - - - - RRNA-ADENINE-N6--METHYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine. - ErmC 23S rRNA methyltransferase - GO:0008988 - S-adenosyl-L-methionine:rRNA - gene ksgA methyltransferase - rRNA (adenine-N6-)-methyltransferase - ribonucleic acid-adenine methylase - ribosomal ribonucleate adenine 6-methyltransferase - - - - - - - - - - - - - - 2.7.1.5 - - - - - - GO:0008993 - - - - - - RHAMNULOKIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + L-rhamnulose = ADP + L-rhamnulose 1-phosphate. - ATP:L-rhamnulose 1-phosphotransferase - GO:0008993 - L-rhamnulokinase - L-rhamnulose kinase - RhuK - rhamnulokinase - rhamnulose kinase - - - - - - - - - - - - 2.3.1.128 - - - - - - 2.3.1.128-RXN - - - - - - GO:0008999 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + ribosomal-protein L-alanine = CoA + ribosomal-protein N-acetyl-L-alanine. - GO:0008999 - acetyl-CoA:ribosomal-protein-L-alanine N-acetyltransferase - ribosomal protein S18 acetyltransferase - ribosomal-protein-alanine N-acetyltransferase - - - - - - - - - - - - 2.3.1.30 - - - - - - GO:0009001 - - - - - - SERINE-O-ACETTRAN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + L-serine = CoA + O-acetyl-L-serine. - GO:0009001 - L-serine acetyltransferase - SATase - acetyl-CoA:L-serine O-acetyltransferase - serine O-acetyltransferase - serine acetyltransferase - serine transacetylase - - - - - - - - - - - - - 3.4.16.4 - - - - - - 3.4.16.4-RXN - - - - - - GO:0009002 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (Ac)2-L-Lys-D-alanyl-D-alanine + H2O = (Ac)2-L-Lys-D-alanine + D-alanine. - D-alanine carboxypeptidase - D-alanyl carboxypeptidase - D-alanyl-D-alanine carboxypeptidase - D-alanyl-D-alanine-carboxypeptidase - D-alanyl-D-alanine-cleaving peptidase - D-alanyl-D-alanine-cleaving-peptidase - DD-carboxypeptidase - DD-peptidase - DD-transpeptidase - GO:0009002 - serine-type D-Ala-D-Ala carboxypeptidase - - - - - - - - - - - - - 2.1.1.72 - - - - - - 2.1.1.72-RXN - - - - - - GO:0009007 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + DNA adenine = S-adenosyl-L-homocysteine + DNA 6-methylaminopurine.; - DNA adenine methylase - EcoRI methylase - GO:0009007 - N-6 adenine-specific DNA methylase - modification methylase - restriction-modification system - site-specific DNA-methyltransferase (adenine-specific) - - - - - - - - - - - - 2.4.1.21 - - - - - - GLYCOGENSYN-RXN - - - - - - GO:0009011 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ADP-glucose + (1,4)-alpha-D-glucosyl(n) = ADP + (1,4)-alpha-D-glucosyl(n+1). - ADP-glucose starch synthase - ADP-glucose transglucosylase - ADP-glucose--starch glucosyltransferase - ADP-glucose:1 4-alpha-D-glucan 4-alpha-D-glucosyltransferase - ADPG starch synthetase - ADPG-starch glucosyltransferase - ADPglucose-starch glucosyltransferase - ADPglucose:1 4-alpha-D-glucan 4-alpha-D-glucosyltransferase - GO:0009011 - adenosine diphosphate glucose-starch glucosyltransferase - adenosine diphosphoglucose-starch glucosyltransferase - glycogen synthase - starch synthase - starch synthetase - - - - - - - - - - - - - 1.2.1.16 - - - - - - GO:0009013 - - - - - - SUCCSEMIALDDEHYDROG-RXN - - - - - - e0020 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: succinate semialdehyde + NAD(P)+ + H2O = succinate + NAD(P)H + H+. - GO:0009013 - oxidoreductase - succinate semialdehyde dehydrogenase - succinate-semialdehyde dehydrogenase [NAD(P)+] - - - - - - - - - - - - - 3.5.1.18 - - - - - - GO:0009014 - - - - - - SUCCDIAMINOPIMDESUCC-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-succinyl-LL-2,6-diaminoheptanedioate + H2O = succinate + LL-2,6-diaminoheptanedioate. - GO:0009014 - N-succinyl-L-alpha epsilon-diaminopimelic acid deacylase - N-succinyl-LL-2 6-diaminoheptanedioate amidohydrolase - succinyl-diaminopimelate desuccinylase - - - - - - - - - - - - 2.1.1.31 - - - - - - GO:0009019 - - - - - - TRNA-GUANINE-N1--METHYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine. - GO:0009019 - S-adenosyl-L-methionine:tRNA - tRNA (guanine-N1-)-methyltransferase - tRNA guanine 1-methyltransferase - transfer ribonucleate guanine 1-methyltransferase - - - - - - - - - - - - - 2.1.1.35 - - - - - - GO:0009021 - - - - - - TRNA-URACIL-5--METHYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing thymine. - GO:0009021 - M5U-methyltransferase - RUMT - S-adenosyl-L-methionine:tRNA - activity - m5U-methyltransferase - ribothymidyl synthase - tRNA (uracil-5-)-methyltransferase - tRNA uracil 5-methyltransferase - tRNA:m5U54-methyltransferase - transfer RNA uracil 5-methyltransferase - transfer RNA uracil methylase - - - - - - - - - - - - - 2.7.7.56 - - - - - - GO:0009022 - - - - - - TRNA-NUCLEOTIDYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. - GO:0009022 - RNase PH - phosphate-dependent exonuclease - ribonuclease PH - tRNA nucleotidyltransferase - tRNA:phosphate nucleotidyltransferase - - - - - - - - - - - - - 1.1.1.58 - - - - - - ALTRO-OXIDOREDUCT-RXN - - - - - - GO:0009026 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-altronate + NAD+ = D-tagaturonate + NADH + H+. - D-altronate:NAD+ 3-oxidoreductase - D-tagaturonate reductase - GO:0009026 - TagUAR - altronate dehydrogenase - altronate oxidoreductase - altronic oxidoreductase - tagaturonate dehydrogenase - tagaturonate reductase - - - - - - - - - - - - - 1.1.1.93 - - - - - - GO:0009027 - - - - - - TARTRATE-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: tartrate + NAD+ = oxaloglycolate + NADH + H+. - GO:0009027 - mesotartrate dehydrogenase - tartrate dehydrogenase - tartrate:NAD+ oxidoreductase - - - - - - - - - - - - - - 2.7.4.16 - - - - - - GO:0009030 - - - - - - THI-P-KIN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + thiamin phosphate = ADP + thiamin diphosphate. - ATP:thiamine-phosphate phosphotransferase - GO:0009030 - thiamin monophosphatase - thiamin monophosphokinase - thiamin phosphate kinase - thiamin-monophosphate kinase - thiamin-phosphate kinase - thiamine-monophosphate kinase - thiamine-phosphate kinase - - - - - - - - - - - - - 3.1.21.4 - - - - - - 3.1.21.4-RXN - - - - - - GO:0009036 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates and 3' hydroxyls. Cleavage is dependent on the presence in the DNA of a specific recognition site; cleavage occurs at or very near this recognition site. - GO:0009036 - Type II restriction enzyme - Type II site-specific deoxyribonuclease - - - - - - - - - - - - GO:0009037 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences; occurs through a phosphotyrosyl intermediate in which the target sequence is first cleaved by the nucleophilic attack by a tyrosine in the active site. - GO:0009037 - site-specific tyrosine recombinase - tyrosine recombinase - tyrosine-based site-specific recombinase - - - - - - - - - - - - - - 2.7.1.66 - - - - - - GO:0009038 - - - - - - UNDECAPRENOL-KINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + undecaprenol = ADP + undecaprenyl phosphate. - ATP:undecaprenol phosphotransferase - C55-isoprenoid alcohol kinase - C55-isoprenoid alcohol phosphokinase - C55-isoprenyl alcohol phosphokinase - GO:0009038 - isoprenoid alcohol kinase - isoprenoid alcohol phosphokinase - isoprenoid-alcohol kinase - polyisoprenol kinase - undecaprenol kinase - - - - - - - - - - - - - 3.5.1.5 - - - - - - GO:0009039 - - - - - - UREASE-RXN - - - - - - e0170 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: urea + H2O = CO2 + 2 NH3. - GO:0009039 - urea amidohydrolase - urease - - - - - - - - - - - - - - 2.7.4.- - - - - - - GO:0009041 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP. - GO:0009041 - uridylate kinase - - - - - - - - - - - - - 3.2.1.37 - - - - - - 3.2.1.37-RXN - - - - - - GO:0009044 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of 1,4-beta-D-xylans so as to remove successive D-xylose residues from the non-reducing termini. - 1 4-beta-D-xylan xylohydrolase - GO:0009044 - beta-D-xylopyranosidase - beta-xylosidase - exo-1 4-beta-D-xylosidase - exo-1 4-beta-xylosidase - exo-1 4-xylosidase - xylan 1,4-beta-xylosidase - xylobiase - - - - - - - - - - - - - 5.3.1.5 - - - - - - GO:0009045 - - - - - - XYLISOM-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-xylose = D-xylulose. - D-xylose aldose-ketose-isomerase - D-xylose isomerase - D-xylose ketoisomerase - D-xylose ketol-isomerase - GO:0009045 - xylose isomerase - - - - - - - - - - - - - 20046 "electron carrier activity" - - - - - - GO:0009053 - - - - - - GO:0009054 - - - - - - GO:0009055 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system. - 2Fe-2S electron transfer carrier - 3Fe-4S 4Fe-4S electron transfer carrier - GO:0009055 - adrenodoxin-type ferredoxin - amicyanin - azurin - bacterial-type ferredoxin - chloroplast-type ferredoxin - copper electron carrier - dicluster bacterial-type ferredoxin - electron acceptor - electron carrier - electron carrier chlorophyll electron transport system - electron donor - electron transfer flavoprotein - electron transfer flavoprotein group I - electron transfer flavoprotein group II - electron transporter - high-potential iron-sulfur carrier - iron-sulfur electron transfer carrier - monocluster bacterial-type ferredoxin - mononuclear iron electron carrier - polyferredoxin - redox-active disulfide bond electron carrier - rubredoxin - small blue copper electron carrier - thioredoxin-like 2Fe-2S ferredoxin - - - - - - - - - - - - - Anabolism - - - - - - GO:0009058 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. - GO:0009058 - anabolism - biosynthesis - biosynthetic process - formation - synthesis - - - - - - - - - - - - - GO:0009059 - - - - - - GO:0043284 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.; - GO:0009059 - biopolymer biosynthetic process - macromolecule anabolism - macromolecule biosynthesis - macromolecule biosynthetic process - macromolecule formation - macromolecule synthesis - - - - - - - - - - - - Cellular_respiration#Aerobic_respiration - - - - - - GO:0009060 - - - - - - PWY-3781 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. - GO:0009060 - aerobic respiration - - - - - - - - - - - - - GO:0009069 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. - GO:0009069 - serine family amino acid metabolic process - serine family amino acid metabolism - - - - - - - - - - - - - - COMPLETE-ARO-PWY - - - - - - GO:0009073 - - - - - - GO:0016089 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). - GO:0009073 - aromatic amino acid family anabolism - aromatic amino acid family biosynthesis - aromatic amino acid family biosynthetic process - aromatic amino acid family biosynthetic process shikimate pathway - aromatic amino acid family formation - aromatic amino acid family synthesis - - - - - - - - - - - - - GO:0009081 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.; - GO:0009081 - branched chain family amino acid metabolic process - branched chain family amino acid metabolism - - - - - - - - - - - - - - GO:0009082 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. - GO:0009082 - branched chain family amino acid anabolism - branched chain family amino acid biosynthesis - branched chain family amino acid biosynthetic process - branched chain family amino acid formation - branched chain family amino acid synthesis - - - - - - - - - - - - - 448562 "Branched-chain amino acid catabolism" - - - - - - 469691 "Branched-chain amino acid catabolism" - - - - - - 487403 "Branched-chain amino acid catabolism" - - - - - - 507355 "Branched-chain amino acid catabolism" - - - - - - 517365 "Branched-chain amino acid catabolism" - - - - - - 526243 "Branched-chain amino acid catabolism" - - - - - - 531120 "Branched-chain amino acid catabolism" - - - - - - 536607 "Branched-chain amino acid catabolism" - - - - - - 542202 "Branched-chain amino acid catabolism" - - - - - - 547671 "Branched-chain amino acid catabolism" - - - - - - 552158 "Branched-chain amino acid catabolism" - - - - - - 557746 "Branched-chain amino acid catabolism" - - - - - - 568363 "Branched-chain amino acid catabolism" - - - - - - 581565 "Branched-chain amino acid catabolism" - - - - - - 592461 "Branched-chain amino acid catabolism" - - - - - - 595328 "Branched-chain amino acid catabolism" - - - - - - 597346 "Branched-chain amino acid catabolism" - - - - - - 598192 "Branched-chain amino acid catabolism" - - - - - - 599707 "Branched-chain amino acid catabolism" - - - - - - 600628 "Branched-chain amino acid catabolism" - - - - - - 602445 "Branched-chain amino acid catabolism" - - - - - - 70895 "Branched-chain amino acid catabolism" - - - - - - GO:0009083 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. - GO:0009083 - branched chain family amino acid breakdown - branched chain family amino acid catabolic process - branched chain family amino acid catabolism - branched chain family amino acid degradation - - - - - - - - - - - - GO:0009085 - - - - - - PWY-5097 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid.; - GO:0009085 - lysine anabolism - lysine biosynthesis - lysine biosynthetic process - lysine formation - lysine synthesis - - - - - - - - - - - - - GO:0009086 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. - GO:0009086 - methionine anabolism - methionine biosynthesis - methionine biosynthetic process - methionine formation - methionine synthesis - - - - - - - - - - - - - GO:0009088 - - - - - - HOMOSER-THRESYN-PWY - - - - - - THRESYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. - GO:0009088 - threonine anabolism - threonine biosynthesis - threonine biosynthetic process - threonine formation - threonine synthesis - - - - - - - - - - - - - GO:0009089 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.; - GO:0009089 - diaminopimelate pathway - diaminopimelic acid pathway - lysine anabolism via diaminopimelate - lysine biosynthesis via diaminopimelic acid - lysine biosynthetic process via diaminopimelate - lysine biosynthetic process via diaminopimelic acid - lysine formation via diaminopimelate - lysine synthesis via diaminopimelate - - - - - - - - - - - - GO:0009094 - - - - - - GO:0019274 - - - - - - GO:0019275 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid.; - GO:0009094 - L-phenylalanine anabolism - L-phenylalanine biosynthesis - L-phenylalanine biosynthetic process - L-phenylalanine formation - L-phenylalanine synthesis - phenylalanine biosynthesis - phenylalanine biosynthetic process - phenylalanine biosynthetic process prephenate pathway - phenylalanine biosynthetic process shikimate pathway - - - - - - - - - - - - - GO:0009097 - - - - - - ILEUSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid. - GO:0009097 - isoleucine anabolism - isoleucine biosynthesis - isoleucine biosynthetic process - isoleucine formation - isoleucine synthesis - - - - - - - - - - - - - GO:0009098 - - - - - - LEUSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. - GO:0009098 - leucine anabolism - leucine biosynthesis - leucine biosynthetic process - leucine formation - leucine synthesis - - - - - - - - - - - - - - GO:0009099 - - - - - - VALSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid. - GO:0009099 - valine anabolism - valine biosynthesis - valine biosynthetic process - valine formation - valine synthesis - - - - - - - - - - - - BIOTIN-SYNTHESIS-PWY - - - - - - GO:0009102 - - - - - - PWY-3701 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. - GO:0009102 - biotin anabolism - biotin biosynthesis - biotin biosynthetic process - biotin formation - biotin synthesis - vitamin B7 biosynthesis - vitamin B7 biosynthetic process - vitamin H biosynthesis - vitamin H biosynthetic process - - - - - - - - - - - - - GO:0009103 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. - GO:0009103 - LPS biosynthetic process - lipopolysaccharide anabolism - lipopolysaccharide biosynthesis - lipopolysaccharide biosynthetic process - lipopolysaccharide formation - lipopolysaccharide synthesis - - - - - - - - - - - - GO:0009107 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. - GO:0009107 - lipoate anabolism - lipoate biosynthesis - lipoate biosynthetic process - lipoate formation - lipoate synthesis - - - - - - - - - - - - - GO:0009113 - - - - - - PWY-841 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. - GO:0009113 - purine base anabolism - purine base biosynthesis - purine base biosynthetic process - purine base formation - purine base synthesis - - - - - - - - - - - - GO:0009116 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). - GO:0009116 - nucleoside metabolic process - nucleoside metabolism - - - - - - - - - - - - GO:0009117 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). - GO:0009117 - nucleotide metabolic process - nucleotide metabolism - - - - - - - - - - - - - GO:0009152 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0009152 - purine ribonucleotide anabolism - purine ribonucleotide biosynthesis - purine ribonucleotide biosynthetic process - purine ribonucleotide formation - purine ribonucleotide synthesis - - - - - - - - - - - - GO:0009156 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a glycosamine consisting of a base linked to a ribose sugar esterified with phosphate on its glycose moiety. - GO:0009156 - ribonucleoside monophosphate anabolism - ribonucleoside monophosphate biosynthesis - ribonucleoside monophosphate biosynthetic process - ribonucleoside monophosphate formation - ribonucleoside monophosphate synthesis - - - - - - - - - - - - - GO:0009164 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). - GO:0009164 - nucleoside breakdown - nucleoside catabolic process - nucleoside catabolism - nucleoside degradation - - - - - - - - - - - - - - GO:0009165 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). - GO:0009165 - nucleotide anabolism - nucleotide biosynthesis - nucleotide biosynthetic process - nucleotide formation - nucleotide synthesis - - - - - - - - - - - - - GO:0009166 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). - GO:0009166 - nucleotide breakdown - nucleotide catabolic process - nucleotide catabolism - nucleotide degradation - - - - - - - - - - - - GO:0009186 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a glycosamine consisting of a base linked to a deoxyribose sugar esterified with diphosphate on its glycose moiety. - GO:0009186 - deoxyribonucleoside diphosphate metabolic process - deoxyribonucleoside diphosphate metabolism - - - - - - - - - - - - - GO:0009225 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. - GO:0009225 - cellular nucleotide-sugar metabolic process - nucleotide-sugar metabolism - - - - - - - - - - - - - GO:0009228 - - - - - - THISYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. - GO:0009228 - thiamin anabolism - thiamin biosynthesis - thiamin biosynthetic process - thiamin formation - thiamin synthesis - thiamine biosynthesis - thiamine biosynthetic process - vitamin B1 biosynthesis - vitamin B1 biosynthetic process - - - - - - - - - - - - GO:0009229 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle. - GO:0009229 - TPP biosynthesis - TPP biosynthetic process - thiamin diphosphate anabolism - thiamin diphosphate biosynthesis - thiamin diphosphate biosynthetic process - thiamin diphosphate formation - thiamin diphosphate synthesis - thiamin pyrophosphate biosynthesis - thiamin pyrophosphate biosynthetic process - thiamine diphosphate biosynthesis - thiamine diphosphate biosynthetic process - thiamine pyrophosphate biosynthesis - thiamine pyrophosphate biosynthetic process - - - - - - - - - - - - - GO:0009230 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.; - GO:0009230 - thiamin breakdown - thiamin catabolic process - thiamin catabolism - thiamin degradation - thiamine catabolic process - thiamine catabolism - vitamin B1 catabolic process - vitamin B1 catabolism - - - - - - - - - - - - GO:0009231 - - - - - - RIBOSYN2-PWY - - - - - - Riboflavin - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). - GO:0009231 - riboflavin anabolism - riboflavin biosynthesis - riboflavin biosynthetic process - riboflavin formation - riboflavin synthesis - vitamin B2 biosynthesis - vitamin B2 biosynthetic process - vitamin G biosynthesis - vitamin G biosynthetic process - - - - - - - - - - - - GO:0009234 - - - - - - MENAQUINONESYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of any of the menaquinones, any of the quinone-derived compounds synthesized by intestinal bacteria. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones have vitamin K activity and are known as vitamin K2. - GO:0009234 - menaquinone anabolism - menaquinone biosynthesis - menaquinone biosynthetic process - menaquinone formation - menaquinone synthesis - menatetrenone biosynthesis - menatetrenone biosynthetic process - multiprenylmenaquinone biosynthesis - multiprenylmenaquinone biosynthetic process - vitamin K2 biosynthesis - vitamin K2 biosynthetic process - - - - - - - - - - - - - GO:0009236 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom. - GO:0009236 - cobalamin anabolism - cobalamin biosynthesis - cobalamin biosynthetic process - cobalamin formation - cobalamin synthesis - vitamin B12 biosynthesis - vitamin B12 biosynthetic process - - - - - - - - - - - - ENTBACSYN-PWY - - - - - - GO:0009239 - - - - - - GO:0031191 - - - - - - GO:0031192 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway. - GO:0009239 - enterobactin anabolism - enterobactin biosynthesis - enterobactin biosynthetic process - enterobactin biosynthetic process peptide formation - enterobactin biosynthetic process peptide modification - enterobactin formation - enterobactin synthesis - enterobactin synthetase - enterochelin biosynthesis - enterochelin biosynthetic process - - - - - - - - - - - - - - GO:0009245 - - - - - - NAGLIPASYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid moiety of bacterial lipopolysaccharides, consisting of six fatty acyl chains linked to two glucosamine residues. - GO:0009245 - lipid A anabolism - lipid A biosynthesis - lipid A biosynthetic process - lipid A formation - lipid A synthesis - - - - - - - - - - - - GO:0009247 - - - - - - PWY-401 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glycolipid, a compound containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid. - GO:0009247 - glycolipid anabolism - glycolipid biosynthesis - glycolipid biosynthetic process - glycolipid formation - glycolipid synthesis - - - - - - - - - - - - GO:0009249 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The addition of a lipoyl group to an amino acid residue in a protein. - GO:0009249 - protein lipoylation - - - - - - - - - - - - GO:0009250 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. - GO:0009250 - glucan anabolism - glucan biosynthesis - glucan biosynthetic process - glucan formation - glucan synthesis - - - - - - - - - - - - GO:0009252 - - - - - - GO:0009285 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls. - GO:0009252 - murein biosynthesis - murein biosynthetic process - peptidoglycan anabolism - peptidoglycan biosynthesis - peptidoglycan biosynthetic process - peptidoglycan formation - peptidoglycan synthesis - - - - - - - - - - - - GO:0009253 - - - - - - GO:0009286 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls. - GO:0009253 - murein catabolic process - murein catabolism - peptidoglycan breakdown - peptidoglycan catabolic process - peptidoglycan catabolism - peptidoglycan degradation - - - - - - - - - - - - GO:0009254 - - - - - - GO:0009287 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The continual breakdown and regeneration of peptidoglycan required to maintain the cell wall. - GO:0009254 - murein turnover - peptidoglycan turnover - - - - - - - - - - - - - GO:0009264 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety. - GO:0009264 - deoxyribonucleotide breakdown - deoxyribonucleotide catabolic process - deoxyribonucleotide catabolism - deoxyribonucleotide degradation - - - - - - - - - - - - GO:0009267 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. - GO:0009267 - cellular response to starvation - - - - - - - - - - - - GO:0009273 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of the peptidoglycan-based cell wall. An example of this process is found in Escherichia coli. - GO:0009273 - cell envelope biosynthesis - cell envelope biosynthetic process - cell wall anabolism - cell wall assembly - cell wall biosynthetic process - cell wall formation - cell wall synthesis - peptidoglycan-based cell wall biogenesis - - - - - - - - - - - - - GO:0009274 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protective structure outside the cytoplasmic membrane composed of peptidoglycan, a molecule made up of a glycan (sugar) backbone of repetitively alternating N-acetylglucosamine and N-acetylmuramic acid with short, attached, cross-linked peptide chains containing unusual amino acids; also called murein. An example of this component is found in Escherichia coli. - GO:0009274 - envelope - murein sacculus - peptidoglycan - peptidoglycan-based cell wall - - - - - - - - - - - - - GO:0009279 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A lipid bilayer that forms the outermost layer of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures. - GO:0009279 - cell outer membrane - outer membrane of cell - - - - - - - - - - - - - GO:0009288 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. - GO:0009288 - bacterial-type flagellum - flagellin-based flagellum - - - - - - - - - - - - - GO:0009291 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of unidirectional (polarized) transfer of genetic information involving direct cellular contact between a donor and recipient cell; the contact is followed by the formation of a cellular bridge that physically connects the cells; some or all of the chromosome(s) of one cell ('male') is then transferred into the other cell ('female'); unidirectional conjugation occurs between cells of different mating types. Examples of this process are found in Prokaryotes. - GO:0009291 - mating - unidirectional conjugation - - - - - - - - - - - - GO:0009294 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material. - DNA mediated transformation - DNA-mediated transformation - GO:0009294 - - - - - - - - - - - - GO:0009295 - - - - - - Nucleoid - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The region of a bacterial cell, mitochondrion or chloroplast to which the DNA is confined. - GO:0009295 - nucleoid - - - - - - - - - - - - - GO:0009296 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The assembly of a flagellum. In bacteria, this is a whiplike motility appendage present on the surface of some species; in eukaryotes, flagella are threadlike protoplasmic extensions used to propel flagellates and sperm. Flagella are composed of flagellin and have the same basic structure as cilia but are longer in proportion to the cell and present in much smaller numbers. - GO:0009296 - flagella assembly - flagella biogenesis - flagellum assembly - flagellum biogenesis - - - - - - - - - - - - - GO:0009306 - - - - - - GO:0045166 - - - - - - GO:0045731 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The controlled release of proteins from a cell or group of cells. - GO:0009306 - glycoprotein secretion - protein secretion - protein secretion during cell fate commitment - protein secretion resulting in cell fate commitment - - - - - - - - - - - - - GO:0009307 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that protect an organism from invading foreign DNA by methylation of self DNA at specific sequences and nucleolytic cleavage of unmethylated foreign DNA. - DNA restriction - DNA restriction-modification system - GO:0009307 - - - - - - - - - - - - - 3-ISOPROPYLMALISOM-CPLX - - - - - - GO:0009316 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A heterodimeric enzyme complex composed of subunits leuC and leuD. Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. - 3-isopropylmalate dehydratase complex - GO:0009316 - isopropylmalate isomerase complex - - - - - - - - - - - - - GO:0009317 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex. - ACCase complex - GO:0009317 - acetyl-CoA carboxylase complex - - - - - - - - - - - - - GO:0009318 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex that catalyzes exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield nucleoside 5'-phosphates; it prefers single-stranded DNA. - GO:0009318 - exodeoxyribonuclease VII complex - - - - - - - - - - - - - GO:0009325 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex that catalyzes the formation of nitrate from nitrite with the concomitant reduction of an acceptor. - GO:0009325 - nitrate reductase complex - - - - - - - - - - - - - GO:0009326 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2). - GO:0009326 - formate dehydrogenase complex - - - - - - - - - - - - - GO:0009331 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. - GO:0009331 - glycerol-3-phosphate dehydrogenase complex - - - - - - - - - - - - - GO:0009337 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A multisubunit iron flavoprotein, which in yeast is composed of 2 alpha and 2 beta subunits. Catalyzes the reduction of hydrogen sulfide to sulfide. - GO:0009337 - sulfite reductase complex (NADPH) - sulphite reductase complex - - - - - - - - - - - - - GO:0009339 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An enzyme complex that catalyzes the oxidation of 2-hydroxy acid to form 2-oxo acid and hydrogen peroxide (H2O2). The enzyme is a flavoprotein (FMN). - GO:0009339 - glycolate oxidase complex - - - - - - - - - - - - - GO:0009341 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A multimeric enzyme complex that in E. coli is a heterooctamer made up of four alpha subunits and four beta subunits. Catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. - GO:0009341 - beta-galactosidase complex - - - - - - - - - - - - - GO:0009348 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A homotrimeric protein complex that catalyzes the transfer of a carbamoyl group to ornithine, forming citrulline. - GO:0009348 - ornithine carbamoyltransferase complex - - - - - - - - - - - - - GO:0009349 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine.; - GO:0009349 - riboflavin synthase complex - - - - - - - - - - - - GO:0009360 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A DNA polymerase complex that contains two complexes of the catalytic alpha, beta, delta and epsilon polymerase/exonuclease subunits, plus the DnaX complex, a heptamer that includes the tau and gamma products of the dnaX gene and confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands. - DNA polymerase III complex - GO:0009360 - - - - - - - - - - - - GO:0009372 - - - - - - Quorum_sensing - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which single-celled organisms monitor their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves. - GO:0009372 - quorum sensing - quorum sensing system - - - - - - - - - - - - GO:0009374 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.; - GO:0009374 - biotin binding - vitamin B7 binding - vitamin H binding - - - - - - - - - - - - - GO:0009376 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other Clp family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, six identical subunits of both the ATPase, ClpY, and the protease, ClpQ, self-assemble into an oligomeric ring, and two rings of each subunit, two ClpQ rings surrounded by single ClpY rings, form a dumbbell-shaped complex. - ClpYQ protease complex - GO:0009376 - HslUV protease complex - - - - - - - - - - - - - GO:0009378 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the unwinding of the DNA helix of DNA containing four-way junctions, including Holliday junctions. - GO:0009378 - Holliday junction helicase - four-way junction helicase - - - - - - - - - - - - GO:0009379 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A DNA helicase complex that forms part of a Holliday junction resolvase complex, where the helicase activity is involved in the migration of the junction branch point. The best-characterized example is the E. coli RuvAB complex, in which a hexamer of RuvB subunits possesses helicase activity that is modulated by association with RuvA . - GO:0009379 - Holliday junction helicase complex - - - - - - - - - - - - - GO:0009380 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and one B subunit bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving behind a stable complex between subunit B and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting gap. - GO:0009380 - UvrABC excinuclease complex - excinuclease ABC complex - excinuclease repair complex - - - - - - - - - - - - GO:0009381 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid at sites flanking regions of damaged DNA to which the Uvr ABC excinuclease complexes bind. - GO:0009381 - excinuclease ABC - - - - - - - - - - - - - GO:0009396 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of folic acid and its derivatives. - GO:0009396 - folate and derivative biosynthesis - folate and derivative biosynthetic process - folic acid and derivative anabolism - folic acid and derivative biosynthesis - folic acid and derivative biosynthetic process - folic acid and derivative formation - folic acid and derivative synthesis - vitamin B9 and derivative biosynthesis - vitamin B9 and derivative biosynthetic process - vitamin M and derivative biosynthesis - vitamin M and derivative biosynthetic process - - - - - - - - - - - - - GO:0009399 - - - - - - N2FIX-PWY - - - - - - Nitrogen_fixation - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide. - GO:0009399 - nitrogen fixation - - - - - - - - - - - - - - GO:0009401 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The uptake and phosphorylation of specific carbohydrates from the extracellular environment; uptake and phosphorylation are coupled, making the PTS a link between the uptake and metabolism of sugars; phosphoenolpyruvate is the original phosphate donor; phosphoenolpyruvate passes the phosphate via a signal transduction pathway, to enzyme 1 (E1), which in turn passes it on to the histidine protein, HPr; the next step in the system involves sugar-specific membrane-bound complex, enzyme 2 (EII), which transports the sugar into the cell; it includes the sugar permease, which catalyzes the transport reactions; EII is usually divided into three different domains, EIIA, EIIB, and EIIC. - GO:0009401 - PTS system - phosphoenolpyruvate-dependent sugar phosphotransferase system - - - - - - - - - - - - - GO:0009403 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. - GO:0009403 - toxin anabolism - toxin biosynthesis - toxin biosynthetic process - toxin formation - toxin synthesis - - - - - - - - - - - - GO:0009405 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The set of specific processes that generate the ability of an organism to cause disease in another. - GO:0009405 - channel-forming toxin - cytotoxin - endotoxin - enterotoxin - exotoxin - lipoprotein toxin - neurotoxin - pathogenesis - pore-forming toxin - toxin - virulence - - - - - - - - - - - - - GO:0009409 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.; - GO:0009409 - freezing tolerance - response to cold - - - - - - - - - - - - - GO:0009420 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The long (approximately 20 nm), thin external structure of the flagellum, which acts as a propeller. Examples of this component are found in bacteria. - GO:0009420 - bacterial-type flagellum filament - flagellar filament - flagellin-based flagellum filament - - - - - - - - - - - - - GO:0009424 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The portion of the flagellum that connects the filament to the basal body. Examples of this component are found in bacteria. - GO:0009424 - bacterial-type flagellum hook - flagellar hook - flagellin-based flagellum hook - - - - - - - - - - - - - GO:0009425 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring). Examples of this component are found in bacteria. - GO:0009425 - bacterial-type flagellum basal body - flagellar basal body - flagellin-based flagellum basal body - - - - - - - - - - - - - GO:0009430 - - - - - - GO:0009431 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - One of the rings of the flagellar basal body; a double-flanged ring that anchors the basal body to the cytoplasmic membrane. Examples of this component are found in bacteria.; - GO:0009431 - bacterial-type flagellum basal body, MS ring - flagellar basal body MS ring - flagellar basal body mounting plate - flagellin-based flagellum basal body MS ring - - - - - - - - - - - - GO:0009432 - - - - - - SOS_response - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - An error-prone process for repairing damaged microbial DNA. - GO:0009432 - SOS response - - - - - - - - - - - - GO:0006736 - - - - - - GO:0009435 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.; - GO:0009435 - NAD anabolism - NAD biosynthesis - NAD biosynthetic process - NAD formation - NAD synthesis - NADH biosynthesis - NADH biosynthetic process - nicotinamide adenine dinucleotide biosynthesis - nicotinamide adenine dinucleotide biosynthetic process - oxidized NAD biosynthesis - oxidized NAD biosynthetic process - oxidized nicotinamide adenine dinucleotide biosynthesis - oxidized nicotinamide adenine dinucleotide biosynthetic process - reduced NAD biosynthesis - reduced NAD biosynthetic process - reduced nicotinamide adenine dinucleotide biosynthesis - reduced nicotinamide adenine dinucleotide biosynthetic process - - - - - - - - - - - - - GO:0009446 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine. - GO:0009446 - putrescine anabolism - putrescine biosynthesis - putrescine biosynthetic process - putrescine formation - putrescine synthesis - - - - - - - - - - - - GO:0009448 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. - 4-aminobutanoate metabolic process - 4-aminobutanoate metabolism - 4-aminobutyrate metabolic process - 4-aminobutyrate metabolism - GABA metabolic process - GABA metabolism - GO:0009448 - gamma-aminobutyric acid metabolic process - gamma-aminobutyric acid metabolism - - - - - - - - - - - - - GO:0009451 - - - - - - GO:0016547 - - - - - - RNA_editing - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.; - GO:0009451 - RNA editing - RNA modification - - - - - - - - - - - - - GO:0009454 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a motile cell or organism in response to environmental oxygen. - GO:0009454 - aerotaxis - taxis in response to atmospheric oxygen - - - - - - - - - - - - - 1.10.3.- - - - - - - GO:0009486 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0009486 - cytochrome bo3 ubiquinol oxidase - - - - - - - - - - - - 1.10.99.1 - - - - - - GO:0009496 - - - - - - PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: plastoquinol-1 + 2 oxidized plastocyanin = plastoquinone + 2 reduced plastocyanin. - GO:0009496 - cytochrome b6f - plastoquinol plastocyanin oxidoreductase - plastoquinol-plastocyanin reductase - plastoquinol:oxidized-plastocyanin oxidoreductase - - - - - - - - - - - - GO:0009536 - - - - - - Plastid - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. - GO:0009536 - plastid - - - - - - - - - - - - GO:0009597 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The series of events in which a stimulus from a virus is received and converted into a molecular signal.; - GO:0009597 - detection of virus - perception of virus - - - - - - - - - - - - - GO:0009607 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. - GO:0009607 - response to biotic stimulus - response to biotic stress - - - - - - - - - - - - - - GO:0009635 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants. - GO:0009635 - herbicide susceptibility resistance - response to herbicide - - - - - - - - - - - - GO:0009636 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxin stimulus. - GO:0009636 - detoxification response - response to toxin - toxin resistance - toxin susceptibility resistance - - - - - - - - - - - - GO:0009847 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). - GO:0009847 - spore germination - - - - - - - - - - - - - GO:0009881 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. - GO:0009881 - UV-sensitive opsin - blue-sensitive opsin - green-sensitive opsin - long-wave-sensitive opsin - opsin - photoreceptor - red-sensitive opsin - short-wave-sensitive opsin - violet-sensitive opsin - - - - - - - - - - - - - 5.4.99.12 - - - - - - GO:0009982 - - - - - - GO:0016439 - - - - - - TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. - GO:0009982 - pseudouridine synthase - tRNA pseudouridylate synthase I - tRNA-pseudouridine synthase - tRNA-pseudouridine synthase I - tRNA-uridine isomerase - tRNA-uridine uracilmutase - transfer RNA pseudouridine synthetase - transfer ribonucleate pseudouridine synthetase - - - - - - - - - - - - GO:0009928 - - - - - - GO:0009929 - - - - - - GO:0009986 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The external part of the cell wall and/or plasma membrane. - GO:0009986 - cell associated - cell bound - cell surface - - - - - - - - - - - - GO:0008151 - - - - - - GO:0009987 - - - - - - GO:0050875 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. - GO:0009987 - cell growth and or maintenance - cell physiology - cellular physiological process - cellular process - - - - - - - - - - - - - GO:0010124 - - - - - - PWY0-321 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of phenylacetate. - GO:0010124 - phenylacetate breakdown - phenylacetate catabolic process - phenylacetate catabolism - phenylacetate degradation - - - - - - - - - - - - - - GO:0010181 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. - FMN binding - GO:0010181 - flavin mononucleotide binding - - - - - - - - - - - - - 1.13.11.53 - - - - - - GO:0010308 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O2 = 3-(methylthio)propanoate + formate + CO. - 1 oxidoreductase - 2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase - ARD - E-2 - GO:0010308 - acireductone dioxygenase - acireductone dioxygenase (Ni2+-requiring) - - - - - - - - - - - - - 1.13.11.54 - - - - - - GO:0010309 - - - - - - R147-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O2 = 4-(methylthio)-2-oxobutanoate + formate. - 1 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase - 1 oxidoreductase - 2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase - ARD' - ARD1 - E-2' - GO:0010309 - aci-reductone dioxygenase - acireductone dioxygenase - acireductone dioxygenase [iron(II)-requiring] - - - - - - - - - - - - GO:0010382 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving macromolecules forming, or destined to form, part of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis, occurring at the level of the cell. - GO:0010382 - cellular cell wall macromolecule metabolic process - cellular cell wall macromolecule metabolism - - - - - - - - - - - - - GO:0010501 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a secondary structure of RNA are broken or 'melted'. - GO:0010501 - RNA duplex unwinding - RNA secondary structure unwinding - - - - - - - - - - - - GO:0012501 - - - - - - GO:0016244 - - - - - - Programmed_cell_death - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Cell death resulting from activation of endogenous cellular processes. - GO:0012501 - non-apoptotic programmed cell death - nonapoptotic programmed cell death - programmed cell death - - - - - - - - - - - - - GO:0015031 - - - - - - GO:0015831 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of proteins into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015031 - enzyme transport - protein transport - - - - - - - - - - - - - DISULFOXRED-RXN - - - - - - GO:0008895 - - - - - - GO:0015035 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. - GO:0015035 - haem lyase disulphide oxidoreductase - heme lyase disulfide oxidoreductase - protein disulfide oxidoreductase - protein disulphide oxidoreductase - thioredoxin - - - - - - - - - - - - 10513 "disulfide oxidoreductase activity" - - - - - - GO:0015036 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate.; - GO:0015036 - disulfide oxidoreductase - disulphide oxidoreductase - - - - - - - - - - - - - GO:0015074 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. - DNA integration - GO:0015074 - - - - - - - - - - - - - GO:0015075 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an ion from one side of a membrane to the other. - GO:0015075 - ion transmembrane transporter - ion transporter - - - - - - - - - - - - GO:0015077 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage. - GO:0015077 - monovalent inorganic cation transmembrane transporter - - - - - - - - - - - - - 1383 "hydrogen ion transmembrane transporter activity" - - - - - - GO:0015078 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of hydrogen ions from one side of a membrane to the other. - GO:0015078 - hydrogen ion transmembrane transporter - proton transporter - - - - - - - - - - - - GO:0015087 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of cobalt (Co) ions from one side of a membrane to the other. - GO:0015087 - cobalt ion transmembrane transporter - cobalt zinc uptake permease - zinc cadmium cobalt nickel lead-efflux ATPase - - - - - - - - - - - - - GO:0015095 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of magnesium (Mg) ions from one side of a membrane to the other. - GO:0015095 - magnesium ion transmembrane transporter - - - - - - - - - - - - - GO:0015098 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of molybdate (MoO4 2-) ions from one side of a membrane to the other. Molybdate is the bivalent anion derived from molybdic acid. - GO:0015098 - molybdate ion transmembrane transporter - molybdate transporter - - - - - - - - - - - - GO:0015103 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. - GO:0015103 - inorganic anion transmembrane transporter - - - - - - - - - - - - - GO:0015105 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of arsenite from one side of a membrane to the other.; - GO:0015105 - arsenite transmembrane transporter - - - - - - - - - - - - - GO:0015109 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of chromate from one side of a membrane to the other. Chromate is the anion of chromic acid, H2CrO4 (aq) or CrO3. - GO:0015109 - chromate transmembrane transporter - - - - - - - - - - - - - GO:0015114 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other. - GO:0015114 - phosphate transmembrane transporter - - - - - - - - - - - - GO:0015128 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of gluconate from one side of the membrane to the other. Gluconate is the aldonic acid derived from glucose. - GO:0015128 - L-idonate D-gluconate:hydrogen symporter - gluconate transmembrane transporter - - - - - - - - - - - - 20840 "lactate transmembrane transporter activity" - - - - - - GO:0015129 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of lactate from one side of the membrane to the other. Lactate is 2-hydroxypropanoate, CH3-CHOH-COOH; L(+)-lactate is formed by anaerobic glycolysis in animal tissues, and DL-lactate is found in sour milk, molasses and certain fruit juices. - GO:0015129 - lactate transmembrane transporter - monocarboxylate uptake efflux porter - - - - - - - - - - - - GO:0015137 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, from one side of the membrane to the other. - GO:0015137 - citrate transmembrane transporter - - - - - - - - - - - - - GO:0015144 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of carbohydrate from one side of the membrane to the other. - GO:0015144 - carbohydrate transmembrane transporter - sugar transporter - - - - - - - - - - - - GO:0015153 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of rhamnose from one side of the membrane to the other. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids. - GO:0015153 - rhamnose transmembrane transporter - - - - - - - - - - - - GO:0015169 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of glycerol-3-phosphate from one side of the membrane to the other. Glycerol-3-phosphate is a phosphoric monoester of glycerol.; - GO:0015169 - glycerol-3-phosphate transmembrane transporter - - - - - - - - - - - - 13305 "amino acid transmembrane transporter activity" - - - - - - GO:0015171 - - - - - - GO:0015359 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group. - GO:0015171 - amino acid choline transmembrane transporter - amino acid permease - amino acid transmembrane transporter - amino acid transporter - general amino acid permease - hydroxy aromatic amino acid permease - - - - - - - - - - - - GO:0015185 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of L-gamma-aminobutyric acid from one side of a membrane to the other. L-gamma-aminobutyric acid is 4-aminobutyrate (GABA). - 4-aminobutanoate transporter - 4-aminobutyrate transporter - GABA transporter - GO:0015185 - L-gamma-aminobutyrate transporter - L-gamma-aminobutyric acid transmembrane transporter - L-gamma-aminobutyric acid transporter - betaine GABA:sodium symporter - - - - - - - - - - - - GO:0015197 - - - - - - GO:0015637 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells. - GO:0015197 - peptide transporter - peptide uptake permease - - - - - - - - - - - - GO:0015205 - - - - - - GO:0015392 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acidfrom one side of a membrane to the other. - GO:0015205 - nucleobase transmembrane transporter - - - - - - - - - - - - GO:0015238 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease. - GO:0015238 - drug transmembrane transporter - - - - - - - - - - - - 1 - - - - - - GO:0015249 - - - - - - GO:0015267 - - - - - - GO:0015268 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. - GO:0015267 - alpha-type channel - channel - channel pore class transporter - channel-forming toxin - nonselective channel - pore - pore class transporter - - - - - - - - - - - - GO:0015293 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. - GO:0015293 - cotransporter - porter - symport - symporter - - - - - - - - - - - - GO:0015297 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. - GO:0015297 - antiport - antiporter - countertransporter - dicarboxylate antiporter - exchange transporter - exchanger - porter - - - - - - - - - - - - GO:0015299 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). - GO:0015299 - L-arabinose beta-D-thiogalactopyranoside:hydrogen antiporter - solute:hydrogen antiporter - solute:proton antiporter - - - - - - - - - - - - - GO:0015321 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0015321 - sodium-dependent phosphate transmembrane transporter - - - - - - - - - - - - - GO:0015385 - - - - - - GO:0015502 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). - GO:0015385 - pH-dependent sodium:hydrogen antiporter - pH-dependent sodium:proton antiporter - sodium hydrogen antiporter - sodium:hydrogen antiporter - sodium:hydrogen exchange - sodium:hydrogen exchanger - sodium:proton antiporter - - - - - - - - - - - - - GO:0015386 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in). - GO:0015386 - potassium:hydrogen antiporter - potassium:proton antiporter - - - - - - - - - - - - 3.6.3.17 - - - - - - 3.6.3.17-RXN - - - - - - GO:0015407 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + monosaccharide(out) = ADP + phosphate + monosaccharide(in). Ribose, xylose, arabinose, galactose and methylgalactoside are imported. - ATP phosphohydrolase - GO:0015407 - monosaccharide ABC transporter - monosaccharide-importing ATPase - monosaccharide-transporting ATPase - - - - - - - - - - - - - 3.6.3.29 - - - - - - 3.6.3.29-RXN - - - - - - GO:0015412 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + molybdate(out) = ADP + phosphate + molybdate(in). - ATP phosphohydrolase - GO:0015412 - molybdate ABC transporter - molybdate porter - molybdate transmembrane-transporting ATPase - molybdate transporting ATPase - molybdate-transporting ATPase - - - - - - - - - - - - - 3.6.3.27 - - - - - - 3.6.3.27-RXN - - - - - - GO:0015415 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + phosphate(out) = ADP + phosphate + phosphate(in). - ABC phosphate transporter - ATP phosphohydrolase - GO:0015415 - phosphate ABC transporter - phosphate porter - phosphate transmembrane-transporting ATPase - phosphate transporting ATPase - phosphate-transporting ATPase - - - - - - - - - - - - - 3.6.3.32 - - - - - - 3.6.3.32-RXN - - - - - - GO:0015418 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O + quaternary amine(out) = ADP + phosphate + quaternary amine(in). - ATP phosphohydrolase - GO:0015418 - glycine betaine proline porter - quaternary amine uptake transporter - quaternary-amine-transporting ATPase - quaternary-ammonium-compound ABC transporter - quaternary-ammonium-compound-transporting ATPase - - - - - - - - - - - - 3.6.3.25 - - - - - - 3.6.3.25-RXN - - - - - - GO:0015419 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sulfate(out) = ADP + phosphate + sulfate(in). - ATP phosphohydrolase - GO:0015419 - sulfate ABC transporter - sulfate thiosulfate porter - sulfate transmembrane-transporting ATPase - sulfate transporting ATPase - sulfate-transporting ATPase - sulphate transporting ATPase - sulphate-transporting ATPase - - - - - - - - - - - - - GO:0015424 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out/in) = ADP + phosphate + amino acid(in/out).; - GO:0015424 - amino acid ABC transporter - amino acid-transporting ATPase - - - - - - - - - - - - - 3.6.3.40 - - - - - - 3.6.3.40-RXN - - - - - - GO:0015438 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + teichoic acid(in) = ADP + phosphate + teichoic acid(out). - ATP phosphohydrolase - GO:0015438 - teichoic-acid ABC transporter - teichoic-acid-transporting ATPase - - - - - - - - - - - - GO:0015450 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.; - GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter - protein translocase - - - - - - - - - - - - GO:0015520 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out). - GO:0015520 - tetracyclin:hydrogen antiporter - tetracyclin:proton antiporter - tetracycline:hydrogen antiporter - tetracycline:proton antiporter - - - - - - - - - - - - - GO:0015542 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(in) = sugar(out). - GO:0015542 - lactose glucose efflux transporter - sugar efflux transmembrane transporter - - - - - - - - - - - - GO:0015574 - - - - - - GO:0015584 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of trehalose from one side of the membrane to the other. Trehalose is the disaccharide alpha-D-glucopyranosyl-alpha-D-glucopyranoside that acts of a reserve carbohydrate in certain fungi, algae and lichens. - GO:0015574 - trehalose permease - trehalose transmembrane transporter - - - - - - - - - - - - - 3.6.3.34 - - - - - - 3.6.3.34-RXN - - - - - - GO:0015409 - - - - - - GO:0015623 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + iron chelate(out) = ADP + phosphate + iron chelate(in). Fe-enterobactin, Fe-dicitrate, Fe-hydroxamate and other siderophores are imported. - ATP phosphohydrolase - GO:0015623 - ferric ferric-dicitrate porter - iron-chelate ABC transporter - iron-chelate-transporting ATPase - - - - - - - - - - - - - GO:0015627 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A large protein complex, containing 12-15 subunits, that spans the cell envelope of Gram-negative bacteria and mediates the movement of proteins into the extracellular environment. The complex includes a component in the cytoplasm, an inner membrane subcomplex that reaches into the periplasmic compartment and a secretion pore in the outer membrane. Proteins using the Type II pathway are transported across the cytoplasmic membrane by the Sec or Tat complex. - GO:0015627 - MTB - Sec-dependent secretion system-associated complex - T2SS-associated complexes - general secretion pathway-associated complex - main terminal branch - type II protein secretion system complex - - - - - - - - - - - - - GO:0015628 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which proteins are secreted across the outer membrane of Gram-negative bacteria by the type II secretion system. Proteins using this pathway are first translocated across the cytoplasmic membrane via the Sec or Tat pathways. - GO:0015628 - protein secretion by the T2S - protein secretion by the T2SS - protein secretion by the general secretion pathway - protein secretion by the general secretory pathway - protein secretion by the type II protein secretion system - protein secretion by the type II secretion system - type II protein secretion system - - - - - - - - - - - - - GO:0015643 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a toxin, a poisonous substance that causes damage to biological systems. Toxins are differentiated from simple chemical poisons and vegetable alkaloids by their high molecular weight and antigenicity (they elicit an antibody response). - GO:0015643 - antitoxin - lipoprotein antitoxin - toxin binding - - - - - - - - - - - - - - GO:0015649 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 2-keto-3-deoxygluconate(out) + H+(out) = 2-keto-3-deoxygluconate(in) + H+(in). - 2-keto-3-deoxygluconate:hydrogen symporter - 2-keto-3-deoxygluconate:proton symporter - GO:0015649 - - - - - - - - - - - - - GO:0015658 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of branched-chain aliphatic amino acids from one side of a membrane to the other. Branched-chain aliphatic amino acids are amino acids with a branched carbon skeleton without rings. - GO:0015658 - branched-chain aliphatic amino acid transmembrane transporter - branched-chain aliphatic amino acid transporter - leucine valine isoleucine permease - valine tyrosine tryptophan permease - - - - - - - - - - - - GO:0015662 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate. - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism - GO:0015662 - P-type ATPase - zinc cadmium cobalt nickel lead-efflux ATPase - - - - - - - - - - - - - 2.1.1.113 - - - - - - 2.1.1.113-RXN - - - - - - GO:0015667 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + DNA cytosine = S-adenosyl-L-homocysteine + DNA N4-methylcytosine.; - DNA methylase - DNA[cytosine-N4]methyltransferase - GO:0015667 - N4-cytosine-specific DNA methylase - S-adenosyl-L-methionine:DNA-cytosine 4-N-methyltransferase - S-adenosyl-L-methionine:DNA-cytosine N4-methyltransferase - m4C-forming MTase - modification methylase - restriction-modification system - site-specific DNA-methyltransferase (cytosine-N4-specific) - - - - - - - - - - - - GO:0015671 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of oxygen (O2) into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015671 - oxygen transport - - - - - - - - - - - - - GO:0015672 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of inorganic cations with a valency of one into, out of, within or between cells by means of some external agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. - GO:0015672 - monovalent inorganic cation transport - - - - - - - - - - - - - GO:0015689 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of molybdate (MoO4 2-) ions into, out of, within or between cells by means of some external agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid.; - GO:0015689 - molybdate ion transport - - - - - - - - - - - - GO:0015693 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of magnesium (Mg) ions into, out of, within or between cells by means of some external agent such as a transporter or pore.; - GO:0015693 - magnesium ion transport - magnesium transport - - - - - - - - - - - - GO:0015696 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of ammonium into, out of, within or between cells by means of some external agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. - GO:0015696 - ammonia transport - ammonium transport - - - - - - - - - - - - GO:0015698 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of inorganic anions into, out of, within or between cells by means of some external agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. - GO:0015698 - inorganic anion transport - - - - - - - - - - - - - GO:0015703 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of chromate into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015703 - chromate transport - - - - - - - - - - - - GO:0015711 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of organic anions into, out of, within or between cells by means of some external agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. - GO:0015711 - organic anion transport - - - - - - - - - - - - GO:0015725 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of gluconate into, out of, within or between cells by means of some external agent such as a transporter or pore. Gluconate is the aldonic acid derived from glucose. - GO:0015725 - gluconate transport - - - - - - - - - - - - - GO:0015727 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of lactate into, out of, within or between cells by means of some external agent such as a transporter or pore. Lactate is 2-hydroxypropanoate, CH3-CHOH-COOH; L(+)-lactate is formed by anaerobic glycolysis in animal tissues, and DL-lactate is found in sour milk, molasses and certain fruit juices. - GO:0015727 - lactate transport - - - - - - - - - - - - - GO:0015746 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of citrate, 2-hydroxy-1,2,3-propanetricarboyxlate, into, out of, within or between cells by means of some external agent such as a transporter or pore.; - GO:0015746 - citrate transport - - - - - - - - - - - - - GO:0015758 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of the hexose monosaccharide glucose into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015758 - glucose transport - - - - - - - - - - - - GO:0015768 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of maltose into, out of, within or between cells by means of some external agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch. - GO:0015768 - maltose transport - - - - - - - - - - - - GO:0015771 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of trehalose into, out of, within or between cells by means of some external agent such as a transporter or pore. Trehalose is a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.; - GO:0015771 - trehalose transport - - - - - - - - - - - - - GO:0015774 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of polysaccharides into, out of, within or between cells by means of some external agent such as a transporter or pore. A polysaccharide is a polymer of more than about 10 monosaccharide residues joined by glycosidic linkages. - GO:0015774 - polysaccharide transport - - - - - - - - - - - - - GO:0015777 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of teichoic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. Teichoic acid is any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues. - GO:0015777 - teichoic acid transport - - - - - - - - - - - - GO:0015794 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of glycerol-3-phosphate into, out of, within or between cells by means of some external agent such as a transporter or pore. Glycerol-3-phosphate is a phosphoric monoester of glycerol. - GO:0015794 - glycerol-3-phosphate transport - - - - - - - - - - - - - GO:0015803 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of branched-chain aliphatic amino acids, amino acids with branched carbon skeleton without rings, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015803 - branched-chain aliphatic amino acid transport - - - - - - - - - - - - GO:0015812 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of, within or between cells by means of some external agent such as a transporter or pore. - 4-aminobutanoate transport - 4-aminobutyrate transport - GABA transport - GO:0015812 - gamma-aminobutyric acid transport - - - - - - - - - - - - GO:0015821 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of methionine, 2-amino-4-(methylthio)butanoic acid, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015821 - L-methionine transport - methionine transport - - - - - - - - - - - - GO:0015824 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015824 - L-proline transport - proline transport - - - - - - - - - - - - - GO:0015833 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015833 - peptide transport - - - - - - - - - - - - - GO:0015858 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015858 - nucleoside transport - - - - - - - - - - - - - GO:0015893 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015893 - drug transport - - - - - - - - - - - - GO:0015904 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of tetracycline into, out of, within or between cells by means of some external agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). - GO:0015904 - tetracyclin transport - tetracycline transport - - - - - - - - - - - - - 3.2.1.- - - - - - - GO:0015926 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of glucosyl compounds, substances containing a group derived from a cyclic form of glucose or a glucose derivative. - GO:0015926 - glucosidase - - - - - - - - - - - - 1.4.-.- - - - - - - GO:0015930 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the formation of L-glutamine and 2-oxoglutarate from L-glutamate, using NADH, NADPH or ferredoxin as hydrogen acceptors. - GO:0015930 - glutamate synthase - - - - - - - - - - - - - GO:0015931 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015931 - nucleobase, nucleoside, nucleotide and nucleic acid transport - - - - - - - - - - - - GO:0015934 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). - GO:0015934 - large ribosomal subunit - ribosomal large subunit - - - - - - - - - - - - GO:0015935 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The smaller of the two subunits of a ribosome. - GO:0015935 - ribosomal small subunit - small ribosomal subunit - - - - - - - - - - - - COA-PWY - - - - - - GO:0006764 - - - - - - GO:0015937 - - - - - - PANTOSYN-PWY - - - - - - PWY-4221 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. - CoA biosynthesis - GO:0015937 - coenzyme A anabolism - coenzyme A biosynthesis - coenzyme A biosynthetic process - coenzyme A formation - coenzyme A synthesis - - - - - - - - - - - - GO:0015940 - - - - - - PANTOSYN-PWY - - - - - - PWY-4221 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. - GO:0015940 - pantothenate anabolism - pantothenate biosynthesis - pantothenate biosynthetic process - pantothenate formation - pantothenate synthesis - vitamin B5 biosynthesis - vitamin B5 biosynthetic process - - - - - - - - - - - - GO:0015941 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. - GO:0015941 - pantothenate breakdown - pantothenate catabolic process - pantothenate catabolism - pantothenate degradation - vitamin B5 catabolic process - vitamin B5 catabolism - - - - - - - - - - - - GO:0015942 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid. - GO:0015942 - formate metabolic process - formate metabolism - - - - - - - - - - - - GO:0015969 - - - - - - PPGPPMET-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. - GO:0015969 - guanosine tetraphosphate metabolic process - guanosine tetraphosphate metabolism - - - - - - - - - - - - - GO:0015976 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0015976 - carbon utilization - - - - - - - - - - - - - Autotrophy - - - - - - GO:0015977 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process by which inorganic carbon (usually carbon dioxide) is incorporated into organic compounds (usually carbohydrates). - GO:0015977 - autotrophic CO2 fixation - autotrophic CO2 fixation pathway - autotrophy - carbon utilization by fixation of carbon dioxide - - - - - - - - - - - - - GO:0015986 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. - ATP synthesis coupled proton transport - GO:0015986 - - - - - - - - - - - - - 166187 "Mitochondrial Uncoupling Proteins" - - - - - - 167827 "The proton buffering model" - - - - - - 449089 "Mitochondrial Uncoupling Proteins" - - - - - - 449267 "The proton buffering model" - - - - - - 470201 "Mitochondrial Uncoupling Proteins" - - - - - - 470387 "The proton buffering model" - - - - - - 487888 "Mitochondrial Uncoupling Proteins" - - - - - - 488064 "The proton buffering model" - - - - - - 507859 "Mitochondrial Uncoupling Proteins" - - - - - - 508026 "The proton buffering model" - - - - - - 568683 "Mitochondrial Uncoupling Proteins" - - - - - - 568763 "The proton buffering model" - - - - - - 581886 "Mitochondrial Uncoupling Proteins" - - - - - - 581966 "The proton buffering model" - - - - - - GO:0015992 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of protons (hydrogen ions) into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0015992 - hydrogen ion transport - passive proton transport down the electrochemical gradient - proton transport - - - - - - - - - - - - Biological_membrane - - - - - - GO:0016020 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.; - GO:0016020 - membrane - - - - - - - - - - - - - GO:0016021 - - - - - - Transmembrane_protein - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. - GO:0016021 - integral to membrane - transmembrane - - - - - - - - - - - - - GO:0016036 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. - GO:0016036 - cellular response to phosphate starvation - - - - - - - - - - - - - GO:0006724 - - - - - - GO:0016042 - - - - - - Lipid_catabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. - GO:0016042 - lipid breakdown - lipid catabolic process - lipid catabolism - lipid degradation - lipolysis - - - - - - - - - - - - - - GO:0006093 - - - - - - GO:0016051 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. - GO:0016051 - anabolic carbohydrate metabolic process - anabolic carbohydrate metabolism - carbohydrate anabolism - carbohydrate biosynthesis - carbohydrate biosynthetic process - carbohydrate formation - carbohydrate synthesis - - - - - - - - - - - - - GO:0006095 - - - - - - GO:0016052 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. - GO:0016052 - carbohydrate breakdown - carbohydrate catabolic process - carbohydrate catabolism - carbohydrate degradation - catabolic carbohydrate metabolic process - catabolic carbohydrate metabolism - - - - - - - - - - - - - GO:0016070 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. - GO:0016070 - RNA metabolism - cellular RNA metabolic process - - - - - - - - - - - - GO:0016075 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes. - GO:0016075 - rRNA breakdown - rRNA catabolic process - rRNA catabolism - rRNA degradation - - - - - - - - - - - - - GO:0016114 - - - - - - Terpenoid - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. - GO:0016114 - terpenoid anabolism - terpenoid biosynthesis - terpenoid biosynthetic process - terpenoid formation - terpenoid synthesis - - - - - - - - - - - - - GO:0016149 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site. - GO:0016149 - translation release factor activity, codon specific - - - - - - - - - - - - - GO:0016151 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with nickel (Ni) ions. - GO:0016151 - nickel binding - nickel ion binding - - - - - - - - - - - - - 23891 "urocanate hydratase activity" - - - - - - 4.2.1.49 - - - - - - GO:0016153 - - - - - - UROCANATE-HYDRATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4,5-dihydro-4-oxo-5-imidazolepropanoate = urocanate + H2O.; - GO:0016153 - hydro-lyase - imidazolonepropionate hydrolase - urocanase - urocanate hydratase - - - - - - - - - - - - - 2.4.2.2 - - - - - - GO:0016154 - - - - - - PYRIMIDINE-NUCLEOSIDE-PHOSPHORYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: pyrimidine nucleoside + phosphate = pyrimidine + alpha-D-ribose 1-phosphate. - GO:0016154 - Py-NPase - pyrimidine-nucleoside phosphorylase - pyrimidine-nucleoside:phosphate alpha-D-ribosyltransferase - - - - - - - - - - - - - 3.1.3.8 - - - - - - GO:0016158 - - - - - - RXN0-1001 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate. - 1-phytase - 3-phytase - GO:0016158 - myo-inositol-hexakisphosphate 3-phosphohydrolase - myo-inositol-hexaphosphate 3-phosphohydrolase - phytase - phytate 1-phosphatase - phytate 3-phosphatase - - - - - - - - - - - - GO:0016208 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with AMP, adenosine monophosphate. - AMP binding - GO:0016208 - - - - - - - - - - - - - GO:0016209 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage. - GO:0016209 - antioxidant - - - - - - - - - - - - - 2.3.1.74 - - - - - - GO:0016210 - - - - - - NARINGENIN-CHALCONE-SYNTHASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3 malonyl-CoA + 4-coumaroyl-CoA = 4 CoA + naringenin chalcone + 3 CO2. - CHS - DOCS - GO:0016210 - chalcone synthase - chalcone synthetase - flavanone synthase - flavonone synthase - malonyl-CoA:4-coumaroyl-CoA malonyltransferase - naringenin-chalcone synthase - - - - - - - - - - - - 6.3.1.- - - - - - - GO:0016211 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the ligation of ammonia (NH3) to another substance via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate. - GO:0016211 - ammonia ligase - - - - - - - - - - - - GO:0016226 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. - GO:0016226 - iron-sulfur cluster assembly - iron-sulfur cluster biosynthesis - iron-sulphur cluster assembly - - - - - - - - - - - - GO:0016260 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of selenocysteine, an essential component of glutathione peroxidase and some other proteins. - GO:0016260 - selenocysteine anabolism - selenocysteine biosynthesis - selenocysteine biosynthetic process - selenocysteine formation - selenocysteine synthesis - - - - - - - - - - - - - 1423 "kinase activity" - - - - - - GO:0016301 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.; - GO:0016301 - kinase - phosphokinase - - - - - - - - - - - - GO:0016310 - - - - - - Phosphorylation - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. - GO:0016310 - phosphorylation - - - - - - - - - - - - Dephosphorylation - - - - - - GO:0016311 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. - GO:0016311 - dephosphorylation - - - - - - - - - - - - - 1621 "acetyltransferase activity" - - - - - - 2.3.1.- - - - - - - GO:0016407 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an acetyl group to an acceptor molecule. - GO:0016407 - acetylase - acetyltransferase - - - - - - - - - - - - - 2.1.1.- - - - - - - GO:0016433 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to an adenine residue in an rRNA molecule. - GO:0016433 - rRNA (adenine) methyltransferase - - - - - - - - - - - - 2.7.7.21 - - - - - - GO:0016437 - - - - - - TRNA-CYTIDYLYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CTP + tRNA(n) = diphosphate + tRNA(n+1). - -C-C-A pyrophosphorylase - ATP nucleotidyltransferase - CTP:tRNA cytidylyltransferase - GO:0016437 - nucleotidyltransferase - ribonucleic cytidylic cytidylic adenylic pyrophosphorylase - ribonucleic cytidylyltransferase - tRNA - tRNA CCA-diphosphorylase - tRNA CCA-pyrophosphorylase - tRNA cytidylyltransferase - transfer RNA adenylyltransferase - transfer ribonucleate adenylyltransferase - transfer ribonucleate cytidylyltransferase - transfer ribonucleate nucleotidyltransferase - transfer ribonucleic acid nucleotidyl transferase - transfer ribonucleic adenylyl transferase - transfer ribonucleic-terminal trinucleotide nucleotidyltransferase - transfer-RNA nucleotidyltransferase - - - - - - - - - - - - - 3.6.1.- - - - - - - 3222 "pyrophosphatase activity" - - - - - - GO:0016462 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments. - GO:0016462 - pyrophosphatase - - - - - - - - - - - - - 3.6.3.5 - - - - - - 3.6.3.5-RXN - - - - - - GO:0016463 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(in) = ADP + phosphate + Zn2+(out). - ATP phosphohydrolase - ATPase - AtHMA4 - GO:0016463 - P-type ATPase - P1B-type ATPase - Zn2+-exporting ATPase - zinc exporting ATPase - zinc-exporting ATPase - zinc-translocating P-type ATPase - zn2+-exporting ATPase - - - - - - - - - - - - - GO:0016469 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible. - GO:0016469 - hydrogen-transporting two-sector ATPase complex - proton-transporting two-sector ATPase complex - vacuolar hydrogen-transporting ATPase - - - - - - - - - - - - - GO:0016481 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any cellular process that stops, prevents or reduces the frequency, rate or extent of transcription. - GO:0016481 - down regulation of transcription - down-regulation of transcription - downregulation of transcription - inhibition of transcription - negative regulation of cellular transcription - - - - - - - - - - - - - 1.-.-.- - - - - - - 95 "oxidoreductase activity" - - - - - - GO:0016491 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. - GO:0016491 - oxidoreductase - oxidoreductase activity acting on other substrates - redox - - - - - - - - - - - - GO:0016539 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The removal of an internal amino acid sequence (an intein) from a protein during protein maturation; the excision of inteins is precise and the N- and C-terminal exteins are joined by a normal peptide bond. Protein splicing involves 4 nucleophilic displacements by the 3 conserved splice junction residues. - GO:0016539 - intein - intein-mediated protein splicing - - - - - - - - - - - - - 9388 "transcription activator activity" - - - - - - GO:0003710 - - - - - - GO:0016563 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any transcription regulator activity required for initiation or upregulation of transcription. - GO:0016563 - transcription activating factor - transcription activator - transcriptional activator - - - - - - - - - - - - - GO:0016564 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any transcription regulator activity that prevents or downregulates transcription. - GO:0016564 - negative transcriptional regulator - transcription repressor - transcriptional repressor - - - - - - - - - - - - - GO:0016566 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any activity that stops or downregulates transcription of specific genes or sets of genes. - GO:0016566 - specific transcriptional repressor - - - - - - - - - - - - GO:0016597 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. - GO:0016597 - amino acid binding - - - - - - - - - - - - - 1.1.-.- - - - - - - GO:0016614 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. - GO:0016614 - oxidoreductase activity acting on the CH-OH group of donors other acceptors - oxidoreductase activity, acting on CH-OH group of donors - - - - - - - - - - - - - 1.1.1.- - - - - - - GO:0016616 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. - GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor - - - - - - - - - - - - - - 1.1.1.38 - - - - - - GO:0004472 - - - - - - GO:0016619 - - - - - - MALIC-NAD-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH + H+. Also decarboxylates oxaloacetate. - 'malic' enzyme - GO:0016619 - NAD-linked malic enzyme - NAD-malic enzyme - NAD-specific malic enzyme - malate dehydrogenase (oxaloacetate-decarboxylating) - oxidoreductase - - - - - - - - - - - - 1.2.1.- - - - - - - GO:0016620 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP. - GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor - - - - - - - - - - - - 1.2.4.- - - - - - - GO:0016624 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide. - GO:0016624 - oxidoreductase activity acting on the aldehyde or oxo group of donors disulphide as acceptor - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor - - - - - - - - - - - - - 1.3.-.- - - - - - - GO:0016627 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. - GO:0016627 - oxidoreductase activity acting on the CH-CH group of donors other acceptors - oxidoreductase activity, acting on the CH-CH group of donors - - - - - - - - - - - - 1.4.1.- - - - - - - GO:0016639 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP. - GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor - - - - - - - - - - - - - 1.6.-.- - - - - - - 4134 "oxidoreductase activity, acting on NADH or NADPH" - - - - - - GO:0016651 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. - GO:0016651 - dehydrogenase - oxidoreductase activity acting on NADH or NADPH other acceptor - oxidoreductase activity, acting on NADH or NADPH - - - - - - - - - - - - - 1.6.1.- - - - - - - GO:0016652 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces NAD+ or NADP.; - GO:0016652 - oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor - - - - - - - - - - - - 1.8.4.- - - - - - - GO:0016671 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. - GO:0016671 - oxidoreductase activity acting on sulphur group of donors disulphide as acceptor - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor - - - - - - - - - - - - 1.10.3.- - - - - - - GO:0016682 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces oxygen. - GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor - - - - - - - - - - - - - 1.11.-.- - - - - - - GO:0016684 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which the peroxide group acts as a hydrogen or electron acceptor. - GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor - - - - - - - - - - - - - 1.13.11.- - - - - - - GO:0016702 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. - GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen - - - - - - - - - - - - - 1.14.12.- - - - - - - GO:0016708 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and two atoms of oxygen is incorporated into one donor. - GO:0016708 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor - - - - - - - - - - - - - 1.14.14.- - - - - - - 748 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen" - - - - - - GO:0008402 - - - - - - GO:0016712 - - - - - - GO:0050381 - - - - - - UNSPECIFIC-MONOOXYGENASE-RXN - - - - - - e0551 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor. - GO:0016712 - aryl hydrocarbon hydroxylase - aryl-4-monooxygenase - cytochrome P450 CYP19 - cytochrome p450 - flavoprotein monooxygenase - flavoprotein-linked monooxygenase - microsomal P-450 - microsomal monooxygenase - microsomal p450 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen - substrate reduced-flavoprotein:oxygen oxidoreductase - unspecific monooxygenase - xenobiotic monooxygenase - - - - - - - - - - - - - 2.-.-.- - - - - - - GO:0016740 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. - GO:0016740 - transferase - - - - - - - - - - - - - 2.1.2.- - - - - - - GO:0016742 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0016742 - hydroxymethyl-, formyl- and related transferase - - - - - - - - - - - - 2.1.3.- - - - - - - GO:0016743 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). - GO:0016743 - carboxyl- and carbamoyltransferase - carboxyl- or carbamoyltransferase - - - - - - - - - - - - - 2.3.-.- - - - - - - GO:0016746 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). - GO:0016746 - transferase activity, transferring acyl groups - - - - - - - - - - - - - 1087 "transferase activity, transferring acyl groups other than amino-acyl groups" - - - - - - 2.3.1.- - - - - - - GO:0016747 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). - GO:0016747 - transferase activity transferring groups other than amino-acyl groups - transferase activity, transferring acyl groups other than amino-acyl groups - - - - - - - - - - - - - 2.4.-.- - - - - - - GO:0016757 - - - - - - GO:0016932 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). - GO:0016757 - glycosyltransferase - transferase activity transferring other glycosyl groups - transferase activity, transferring glycosyl groups - transglycosidase - transglycosylase - - - - - - - - - - - - - 2.4.1.- - - - - - - GO:0016758 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). - GO:0016758 - hexosyltransferase - transferase activity, transferring hexosyl groups - - - - - - - - - - - - - 1245 "transferase activity, transferring pentosyl groups" - - - - - - 2.4.2.- - - - - - - GO:0016763 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor). - GO:0016763 - pentosyltransferase - transferase activity, transferring pentosyl groups - - - - - - - - - - - - - 2.5.-.- - - - - - - GO:0016765 - - - - - - GO:0016766 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). - GO:0016765 - transferase activity transferring alkyl or aryl groups other than methyl groups - transferase activity, transferring alkyl or aryl (other than methyl) groups - - - - - - - - - - - - - 2.6.-.- - - - - - - GO:0016769 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor). - GO:0016769 - transferase activity transferring other nitrogenous groups - transferase activity, transferring nitrogenous groups - - - - - - - - - - - - - 2.7.-.- - - - - - - GO:0016772 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). - GO:0016772 - transferase activity, transferring phosphorus-containing groups - - - - - - - - - - - - - 2.7.1.- - - - - - - GO:0016773 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor). - GO:0016773 - phosphotransferase activity, alcohol group as acceptor - - - - - - - - - - - - - 2.7.2.- - - - - - - GO:0016774 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a carboxyl group (acceptor). - GO:0016774 - phosphotransferase activity, carboxyl group as acceptor - - - - - - - - - - - - - 2.7.3.- - - - - - - GO:0016775 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a nitrogenous group (acceptor). - GO:0016775 - phosphotransferase activity, nitrogenous group as acceptor - - - - - - - - - - - - - 2.7.4.- - - - - - - GO:0016776 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor). - GO:0016776 - phosphotransferase activity, phosphate group as acceptor - - - - - - - - - - - - - 2.7.7.- - - - - - - GO:0016779 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a nucleotidyl group to a reactant. - GO:0016779 - nucleotidyltransferase - - - - - - - - - - - - - 1452 "phosphotransferase activity, for other substituted phosphate groups" - - - - - - 2.7.8.- - - - - - - GO:0016780 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor). - GO:0016780 - phosphotransferase activity, for other substituted phosphate groups - - - - - - - - - - - - 2.8.1.- - - - - - - GO:0016783 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor). - GO:0016783 - sulfurtransferase - sulphurtransferase - tRNA sulfurtransferase - - - - - - - - - - - - - 3.-.-.- - - - - - - 450 "hydrolase activity" - - - - - - GO:0016787 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. - GO:0016787 - hydrolase - - - - - - - - - - - - - 3.1.-.- - - - - - - 448 "hydrolase activity, acting on ester bonds" - - - - - - GO:0016788 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any ester bond. - GO:0016788 - esterase - hydrolase activity, acting on ester bonds - - - - - - - - - - - - 3.1.3.- - - - - - - GO:0016302 - - - - - - GO:0016791 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. - GO:0016791 - phosphatase - phosphoric monoester hydrolase - - - - - - - - - - - - - 3.2.-.- - - - - - - GO:0016798 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any glycosyl bond. - GO:0016798 - N-glycosylase - glycosidase - glycosylase - hydrolase activity, acting on glycosyl bonds - - - - - - - - - - - - - 3.2.2.- - - - - - - GO:0016799 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any N-glycosyl bond. - GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds - - - - - - - - - - - - 2731 "dipeptidase activity" - - - - - - 3.4.13.- - - - - - - GO:0016805 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of a dipeptide. - GO:0016805 - dipeptidase - - - - - - - - - - - - - 3.5.-.- - - - - - - GO:0016810 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. - GO:0016810 - hydrolase activity acting on carbon-nitrogen bonds in other compounds - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - - - - - - - - - - - 3.5.1.- - - - - - - GO:0016811 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. - GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides - - - - - - - - - - - - - 2753 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" - - - - - - 3.5.2.- - - - - - - GO:0016812 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide. - GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides - - - - - - - - - - - - - 3.5.3.- - - - - - - GO:0016813 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2. - GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines - - - - - - - - - - - - 3.6.1.- - - - - - - GO:0016818 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. - GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides - - - - - - - - - - - - 3.6.3.- - - - - - - GO:0016820 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane. - GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances - - - - - - - - - - - - 3.7.1.- - - - - - - GO:0016823 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of any acid carbon-carbon bond in a ketonic substance, a substance containing a keto (C=O) group. - GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances - - - - - - - - - - - - - 4.-.-.- - - - - - - GO:0016829 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. - GO:0016829 - lyase - other lyase - - - - - - - - - - - - 1605 "carboxy-lyase activity" - - - - - - 4.1.1.- - - - - - - GO:0016831 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. - GO:0016831 - carboxy-lyase - decarboxylase - - - - - - - - - - - - 4.1.2.- - - - - - - GO:0016228 - - - - - - GO:0016832 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone. - GO:0016832 - aldehyde-lyase - aldolase - - - - - - - - - - - - 4.1.3.- - - - - - - GO:0016833 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of a C-C bond by other means than by hydrolysis or oxidation, of a 3-hydroxy acid. - GO:0016833 - oxo-acid lyase - oxo-acid-lyase - oxoacid lyase - - - - - - - - - - - - - 4.2.-.- - - - - - - GO:0016835 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the breakage of a carbon-oxygen bond. - GO:0016835 - carbon-oxygen lyase - other carbon-oxygen lyase - - - - - - - - - - - - - 4.2.1.- - - - - - - GO:0016836 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of a carbon-oxygen bond by elimination of water. - GO:0016836 - hydro-lyase - - - - - - - - - - - - - 4.2.3.- - - - - - - GO:0016838 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the cleavage of a carbon-oxygen bond by elimination of a phosphate. - GO:0016838 - carbon-oxygen lyase activity, acting on phosphates - - - - - - - - - - - - 4.4.1.14 - - - - - - 4.4.1.14-RXN - - - - - - GO:0016847 - - - - - - GO:0034100 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine = 1-aminocyclopropane-1-carboxylate + methylthioadenosine. - 1-aminocyclopropane-1-carboxylate synthase - 1-aminocyclopropane-1-carboxylate synthetase - 1-aminocyclopropane-1-carboxylic acid synthase - 1-aminocyclopropanecarboxylate synthase - ACC synthase - GO:0016847 - L-VG deaminase - L-vinylglycine deaminase - S-adenosyl-L-methionine methylthioadenosine-lyase - aminocyclopropanecarboxylate synthase - aminocyclopropanecarboxylic acid synthase - - - - - - - - - - - - - 5.-.-.- - - - - - - GO:0016853 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5. - GO:0016853 - isomerase - other isomerase - - - - - - - - - - - - 5.1.1.- - - - - - - GO:0016855 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid. - GO:0016855 - racemase and epimerase activity, acting on amino acids and derivatives - - - - - - - - - - - - 5.1.3.- - - - - - - GO:0016857 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule. - GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives - - - - - - - - - - - - 5.3.1.- - - - - - - GO:0016861 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor, which is an aldose or a ketose, are the same molecule, and no oxidized product appears.; - GO:0016861 - intramolecular isomerase activity interconverting aldoses and ketoses - intramolecular oxidoreductase activity, interconverting aldoses and ketoses - - - - - - - - - - - - 5.3.2.- - - - - - - GO:0016862 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor, which is a keto- or an enol-group, are the same molecule, and no oxidized product appears. - GO:0016862 - intramolecular isomerase activity interconverting keto- and enol-groups - intramolecular oxidoreductase activity, interconverting keto- and enol-groups - - - - - - - - - - - - - 5.4.-.- - - - - - - GO:0016866 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a functional group from one position to another within a single molecule. - GO:0016866 - intramolecular transferase - intramolecular transferase activity transferring other groups - mutase - - - - - - - - - - - - - 5.4.2.- - - - - - - GO:0016777 - - - - - - GO:0016868 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphate group from one position to another within a single molecule. - GO:0016868 - intramolecular transferase activity, phosphotransferases - phosphomutase - phosphotransferase activity with regeneration of donors apparently catalyzing intramolecular transfers - - - - - - - - - - - - - 5.5.-.- - - - - - - GO:0016872 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The catalysis of certain rearrangements of a molecule to break or form a ring. - GO:0016872 - intramolecular lyase - - - - - - - - - - - - - 6.-.-.- - - - - - - GO:0016874 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6. - GO:0016874 - ligase - - - - - - - - - - - - 6.1.1.- - - - - - - GO:0016876 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the ligation of two substances via a carbon-oxygen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate, to form aminoacyl-tRNA or a related compound. - GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds - - - - - - - - - - - - - 6.3.-.- - - - - - - GO:0016879 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the ligation of two substances via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate. - GO:0016879 - ligase activity, forming carbon-nitrogen bonds - other carbon-nitrogen ligase - - - - - - - - - - - - - 6.3.2.- - - - - - - GO:0016881 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond with concomitant breakage of a diphosphate linkage, usually in a nucleoside triphosphate. - GO:0016881 - acid-amino acid ligase - peptide synthase - - - - - - - - - - - - - 6.3.5.- - - - - - - GO:0016003 - - - - - - GO:0016884 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction. - GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor - - - - - - - - - - - - - 1401 "ATPase activity" - - - - - - ADENOSINETRIPHOSPHATASE-RXN - - - - - - ATP-PYROPHOSPHATASE-RXN - - - - - - GO:0004002 - - - - - - GO:0016887 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate. May or may not be coupled to another reaction. - (Ca2+ + Mg2+)-ATPase - ATP hydrolase - ATP monophosphatase - ATP phosphohydrolase - ATPase - GO:0016887 - HCO3--ATPase - SV40 T-antigen - adenosine 5'-triphosphatase - adenosine triphosphatase - adenosinetriphosphatase - complex V - - - - - - - - - - - - 3.1.21.- - - - - - - GO:0016888 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. - GO:0016888 - endodeoxyribonuclease activity producing 5' phosphomonoesters - endodeoxyribonuclease activity, producing 5'-phosphomonoesters - - - - - - - - - - - - 3.1.26.- - - - - - - GO:0016891 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. - GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters - - - - - - - - - - - - 3.4.19.- - - - - - - GO:0016920 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the release of the N-terminal pyroglutamyl group from a peptide or protein. - GO:0016920 - pyroglutamyl-peptidase - - - - - - - - - - - - - 3.2.1.132 - - - - - - 3.2.1.132-RXN - - - - - - GO:0016977 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of beta-1,4-linkages between N-acetyl-D-glucosamine and D-glucosamine residues in a partly acetylated chitosan. - GO:0016977 - chitosan N-acetylglucosaminohydrolase - chitosanase - - - - - - - - - - - - - 4.1.1.39 - - - - - - GO:0016984 - - - - - - RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.; - 3-phospho-D-glycerate carboxy-lyase - D-ribulose 1 5-diphosphate carboxylase - D-ribulose-1 5-bisphosphate carboxylase - GO:0016984 - RuBP carboxylase - RuBisCO - carboxydismutase - diphosphoribulose carboxylase - ribulose 1 5-bisphosphate carboxylase - ribulose 1 5-bisphosphate carboxylase oxygenase - ribulose 1 5-diphosphate carboxylase - ribulose 1 5-diphosphate carboxylase oxygenase - ribulose bisphosphate carboxylase oxygenase - ribulose diphosphate carboxylase - ribulose diphosphate carboxylase oxygenase - ribulose-bisphosphate carboxylase - rubisco - - - - - - - - - - - - - 3.2.1.78 - - - - - - 3.2.1.78-RXN - - - - - - GO:0016985 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the random hydrolysis of 1,4-beta-D-mannosidic linkages in mannans, galactomannans, glucomannans, and galactoglucomannans. - 1 4-beta-D-mannan mannanohydrolase - GO:0016985 - beta-1 4-mannan 4-mannanohydrolase - beta-D-mannanase - beta-mannanase - beta-mannanase B - endo-1 4-beta-mannanase - endo-1 4-mannanase - endo-beta-1 4-mannase - endo-beta-mannanase - mannan endo-1,4-beta-mannosidase - - - - - - - - - - - - GO:0016987 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes. - GO:0016987 - sigma factor - sigma transcription factor - - - - - - - - - - - - GO:0016989 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The function of binding to a sigma factor and stopping, preventing or reducing the rate of its transcriptional activity.; - GO:0016989 - anti-sigma factor - sigma factor antagonist - - - - - - - - - - - - - 2.8.1.8 - - - - - - 2.8.1.8-RXN - - - - - - GO:0016992 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl. - GO:0016992 - LS - LipA - lipoate synthase - lipoyl synthase - protein sulfurtransferase - - - - - - - - - - - - GO:0016998 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. - GO:0016998 - cell wall breakdown - cell wall catabolism - cell wall degradation - cell wall macromolecule catabolic process - - - - - - - - - - - - GO:0016999 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms. - GO:0016999 - antibiotic metabolic process - antibiotic metabolism - - - - - - - - - - - - - - GO:0017000 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.; - GO:0017000 - antibiotic anabolism - antibiotic biosynthesis - antibiotic biosynthetic process - antibiotic formation - antibiotic synthesis - - - - - - - - - - - - - GO:0017001 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms. - GO:0017001 - antibiotic breakdown - antibiotic catabolic process - antibiotic catabolism - antibiotic degradation - - - - - - - - - - - - GO:0017004 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. - GO:0017004 - cytochrome biogenesis - cytochrome complex assembly - - - - - - - - - - - - - GO:0017038 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of proteins into a cell or organelle. - GO:0017038 - protein import - protein uptake - - - - - - - - - - - - - GO:0017076 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate. - GO:0017076 - purine nucleotide binding - - - - - - - - - - - - - 3.6.1.15 - - - - - - GO:0017111 - - - - - - NUCLEOSIDE-TRIPHOSPHATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.; - GO:0017111 - NTPase - apyrase - nucleoside 5-triphosphatase - nucleoside triphosphatase - nucleoside triphosphate hydrolase - nucleoside triphosphate phosphohydrolase - nucleoside-5-triphosphate phosphohydrolase - nucleoside-triphosphatase - unspecific diphosphate phosphohydrolase - - - - - - - - - - - - - GO:0017150 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor. - GO:0017150 - tRNA dihydrouridine synthase - - - - - - - - - - - - GO:0017153 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). - GO:0017153 - sodium:dicarboxylate cotransporter - sodium:dicarboxylate symporter - - - - - - - - - - - - - 1.13.11.20 - - - - - - CYSTEINE-DIOXYGENASE-RXN - - - - - - GO:0017172 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-cysteine + O2 = 3-sulfinoalanine. - GO:0017172 - cysteine dioxygenase - - - - - - - - - - - - 159740 "Gamma-carboxylation of protein precursors" - - - - - - 159854 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 449260 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 449262 "Gamma-carboxylation of protein precursors" - - - - - - 470379 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 470381 "Gamma-carboxylation of protein precursors" - - - - - - 488061 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 508018 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 508020 "Gamma-carboxylation of protein precursors" - - - - - - 517879 "Gamma-carboxylation, transport, and amino-terminal cleavage of proteins" - - - - - - 517881 "Gamma-carboxylation of protein precursors" - - - - - - AA0032 - - - - - - GO:0017187 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase. - GO:0017187 - peptidyl-glutamic acid carboxylation - - - - - - - - - - - - - AA0035 - - - - - - AA0036 - - - - - - GO:0018106 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine). - GO:0018106 - peptidyl-histidine phosphorylation - - - - - - - - - - - - AA0283 - - - - - - GO:0018189 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of the cofactor pyrroloquinoline quinone (PQQ); it is synthesized from a small peptide containing tyrosine and glutamic acid; these amino acids in the peptide are multiply cross-linked and the rest of the peptide is removed. - GO:0018189 - PQQ biosynthesis - PQQ biosynthetic process - coenzyme pyrroloquinoline-quinone biosynthesis - coenzyme pyrroloquinoline-quinone biosynthetic process - pyrroloquinoline quinone anabolism - pyrroloquinoline quinone biosynthesis - pyrroloquinoline quinone biosynthetic process - pyrroloquinoline quinone formation - pyrroloquinoline quinone synthesis - pyrroloquinoline-quinone biosynthesis - pyrroloquinoline-quinone biosynthetic process - - - - - - - - - - - - GO:0018298 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent or noncovalent linking of a chromophore to a protein. - GO:0018298 - protein-chromophore linkage - - - - - - - - - - - - - 1.2.1.18 - - - - - - 1.2.1.18-RXN - - - - - - GO:0018478 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 3-oxopropanoate + CoA + NADP+ = acetyl-CoA + CO2 + NADPH + H+. - GO:0018478 - malonate-semialdehyde dehydrogenase (acetylating) - malonic semialdehyde oxidative decarboxylase - oxidoreductase - - - - - - - - - - - - 1.13.11.2 - - - - - - CATECHOL-23-DIOXYGENASE-RXN - - - - - - GO:0018577 - - - - - - e0156 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: catechol + O2 = 2-hydroxymuconate semialdehyde. - 2 3-pyrocatechase - GO:0018577 - catechol 2 3-oxygenase - catechol 2,3-dioxygenase - catechol oxygenase - catechol:oxygen 2 3-oxidoreductase - cato2ase - metapyrocatechase - pyrocatechol 2 3-dioxygenase - - - - - - - - - - - - - 1.13.11.32 - - - - - - 2-NITROPROPANE-DIOXYGENASE-RXN - - - - - - GO:0018580 - - - - - - e0387 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 2-nitropropane + O2 = 2 acetone + 2 NO2(-) (nitrite). - 2-NPD - 2-nitropropane dioxygenase - 2-nitropropane:oxygen 2-oxidoreductase - GO:0018580 - nitroalkane oxidase - - - - - - - - - - - - - 4-HYDROXYBENZOATE-DECARBOXYLASE-RXN - - - - - - 4.1.1.61 - - - - - - GO:0018799 - - - - - - e0138 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 4-hydroxybenzoate = phenol + CO2. - 4-hydroxybenzoate carboxy-lyase - 4-hydroxybenzoate decarboxylase - GO:0018799 - p-hydroxybenzoate decarboxylase - - - - - - - - - - - - - GO:0019008 - - - - - - GO:0019009 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits. - GO:0019008 - molybdopterin converting factor complex - molybdopterin synthase complex - - - - - - - - - - - - Capsid - - - - - - GO:0019028 - - - - - - GO:0046728 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres. - GO:0019028 - viral capsid - - - - - - - - - - - - - 3.2.2.- - - - - - - 7370 "DNA N-glycosylase activity" - - - - - - GO:0008578 - - - - - - GO:0019104 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site. - DNA N-glycosylase - DNA glycosylase - GO:0019104 - endonuclease VIII - - - - - - - - - - - - - 2.3.1.157 - - - - - - 2.3.1.157-RXN - - - - - - GO:0019134 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + D-glucosamine 1-phosphate = CoA + N-acetyl-D-glucosamine 1-phosphate. - GO:0019134 - acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase - acetyl-CoA:alpha-D-glucosamine-1-phosphate N-acetyltransferase - glucosamine-1-phosphate N-acetyltransferase - - - - - - - - - - - - - GO:0019200 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphate group, usually from ATP, to a carbohydrate substrate molecule. - GO:0019200 - carbohydrate kinase - - - - - - - - - - - - - GO:0019201 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + nucleoside monophosphate = ADP + nucleoside diphosphate. - GO:0019201 - nucleotide kinase - - - - - - - - - - - - - GO:0019205 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate. - GO:0019205 - nucleobase, nucleoside, nucleotide kinase - - - - - - - - - - - - GO:0019242 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. - GO:0019242 - methylglyoxal anabolism - methylglyoxal biosynthesis - methylglyoxal biosynthetic process - methylglyoxal formation - methylglyoxal synthesis - - - - - - - - - - - - GO:0019277 - - - - - - UDPNACETYLGALSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. - GO:0019277 - UDP-N-acetylgalactosamine anabolism - UDP-N-acetylgalactosamine biosynthesis - UDP-N-acetylgalactosamine biosynthetic process - UDP-N-acetylgalactosamine formation - UDP-N-acetylgalactosamine synthesis - - - - - - - - - - - - GO:0019281 - - - - - - MET-SAM-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-succinyl-L-homoserine and cystathionine.; - GO:0019281 - L-methionine anabolism from homoserine via O-succinyl-L-homoserine and cystathionine - L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine - L-methionine formation from homoserine via O-succinyl-L-homoserine and cystathionine - L-methionine synthesis from homoserine via O-succinyl-L-homoserine and cystathionine - methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine - - - - - - - - - - - - GO:0019284 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including S-adenosylmethionine.; - GO:0019284 - L-methionine anabolism from S-adenosylmethionine - L-methionine biosynthesis from S-adenosyl methionine - L-methionine biosynthetic process from S-adenosyl methionine - L-methionine biosynthetic process from S-adenosylmethionine - L-methionine formation from S-adenosylmethionine - L-methionine synthesis from S-adenosylmethionine - methionine biosynthetic process from S-adenosylmethionine - - - - - - - - - - - - GO:0019288 - - - - - - NONMEVIPP-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. - GO:0019288 - isopentenyl diphosphate anabolism mevalonate-independent pathway - isopentenyl diphosphate biosynthesis mevalonate-independent - isopentenyl diphosphate biosynthesis non-mevalonate pathway - isopentenyl diphosphate biosynthetic process mevalonate-independent - isopentenyl diphosphate biosynthetic process non-mevalonate pathway - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway - isopentenyl diphosphate formation mevalonate-independent pathway - isopentenyl diphosphate synthesis mevalonate-independent pathway - mevalonate-independent isopentenyl diphosphate biosynthesis - mevalonate-independent isopentenyl diphosphate biosynthetic process - non-MVA pathway - - - - - - - - - - - - GO:0019290 - - - - - - GO:0031178 - - - - - - GO:0031180 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action. - GO:0019290 - siderochrome biosynthesis - siderochrome biosynthetic process - siderophore anabolism - siderophore biosynthesis - siderophore biosynthetic process - siderophore biosynthetic process peptide formation - siderophore biosynthetic process peptide modification - siderophore formation - siderophore synthesis - - - - - - - - - - - - GO:0019295 - - - - - - P261-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes. - GO:0019295 - coenzyme M anabolism - coenzyme M biosynthesis - coenzyme M biosynthetic process - coenzyme M formation - coenzyme M synthesis - - - - - - - - - - - - GO:0019299 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids. - GO:0019299 - rhamnose metabolic process - rhamnose metabolism - - - - - - - - - - - - - GO:0019301 - - - - - - RHAMCAT-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose. - GO:0019301 - rhamnose breakdown - rhamnose catabolic process - rhamnose catabolism - rhamnose degradation - - - - - - - - - - - - - GO:0019303 - - - - - - RIBOKIN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose). - D-ribose breakdown - D-ribose catabolic process - D-ribose catabolism - D-ribose degradation - GO:0019303 - - - - - - - - - - - - GO:0019310 - - - - - - P562-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. - GO:0019310 - inositol breakdown - inositol catabolic process - inositol catabolism - inositol degradation - myo-inositol catabolic process - myo-inositol catabolism - vitamin Bh catabolic process - vitamin Bh catabolism - - - - - - - - - - - - - GO:0019344 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. - GO:0019344 - cysteine anabolism - cysteine biosynthesis - cysteine biosynthetic process - cysteine formation - cysteine synthesis - - - - - - - - - - - - - GO:0019350 - - - - - - TEICHOICACID-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues. - GO:0019350 - teichoic acid anabolism - teichoic acid biosynthesis - teichoic acid biosynthetic process - teichoic acid formation - teichoic acid synthesis - - - - - - - - - - - - - GO:0019363 - - - - - - PYRIDNUCSYN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. - GO:0019363 - pyridine nucleotide anabolism - pyridine nucleotide biosynthesis - pyridine nucleotide biosynthetic process - pyridine nucleotide formation - pyridine nucleotide synthesis - - - - - - - - - - - - - GO:0019379 - - - - - - SO4ASSIM-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8). - GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) - sulphate assimilation phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase - - - - - - - - - - - - GLUCARDEG-PWY - - - - - - GO:0019394 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glucarate, the anion of glucaric acid. - GO:0019394 - glucarate breakdown - glucarate catabolic process - glucarate catabolism - glucarate degradation - - - - - - - - - - - - GO:0019428 - - - - - - URSIN-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. - GO:0019428 - allantoin anabolism - allantoin biosynthesis - allantoin biosynthetic process - allantoin formation - allantoin synthesis - - - - - - - - - - - - - DETOX1-PWY - - - - - - GO:0019430 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). - GO:0019430 - removal of O2- - removal of oxygen free radicals - removal of superoxide radicals - - - - - - - - - - - - - GO:0019439 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring. - GO:0019439 - aromatic compound breakdown - aromatic compound catabolic process - aromatic compound catabolism - aromatic compound degradation - aromatic hydrocarbon catabolic process - aromatic hydrocarbon catabolism - - - - - - - - - - - - - GLYCLEAV-PWY - - - - - - GO:0019464 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. - GO:0019464 - glycine cleavage system - glycine decarboxylation via glycine cleavage system - - - - - - - - - - - - - GO:0019478 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids. - D-amino acid breakdown - D-amino acid catabolic process - D-amino acid catabolism - D-amino acid degradation - GO:0019478 - - - - - - - - - - - - GO:0019509 - - - - - - PWY-4361 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. - GO:0019509 - L-methionine salvage from methylthioadenosine - methionine recycling - methionine regeneration - methionine salvage from methylthioadenosine - methionine salvage pathway - - - - - - - - - - - - - GO:0019516 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the conversion of lactate to other compounds, such as pyruvate, with concomitant loss of electrons. - GO:0019516 - lactate oxidation - - - - - - - - - - - - GO:0019521 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.; - D-gluconate metabolic process - D-gluconate metabolism - GO:0019521 - - - - - - - - - - - - - GO:0006411 - - - - - - GO:0019538 - - - - - - Protein_metabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. - GO:0019538 - protein metabolic process - protein metabolic process and modification - protein metabolism - protein metabolism and modification - - - - - - - - - - - - GO:0019543 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of propionate, the anion derived from propionic acid. - GO:0019543 - propionate breakdown - propionate catabolic process - propionate catabolism - propionate degradation - - - - - - - - - - - - - GO:0019556 - - - - - - HISDEG-PWY - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including glutamate and formamide.; - GO:0019556 - histidine breakdown to glutamate and formamide - histidine catabolic process to glutamate and formamide - histidine degradation to glutamate and formamide - - - - - - - - - - - - GO:0019568 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of arabinose, arabino-pentose. - GO:0019568 - arabinose breakdown - arabinose catabolic process - arabinose catabolism - arabinose degradation - - - - - - - - - - - - - - GO:0019572 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of L-arabinose, the L-enantiomer of arabino-pentose. - GO:0019572 - L-arabinose breakdown - L-arabinose catabolic process - L-arabinose catabolism - L-arabinose degradation - - - - - - - - - - - - GO:0019627 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2, produced in the liver by the ornithine cycle. It is the main nitrogen-containing excretion product in ureotelic animals. - GO:0019627 - urea metabolic process - urea metabolism - - - - - - - - - - - - - GO:0019629 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of propionate that occurs in the 2-methylcitrate cycle. - GO:0019629 - propionate breakdown 2-methylcitrate cycle - propionate catabolic process, 2-methylcitrate cycle - propionate degradation 2-methylcitrate cycle - - - - - - - - - - - - GO:0019642 - - - http://www.bacillondex.org/cv/GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - GO:0019642 - - - - - - - - - - - - GO:0019751 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. - GO:0019751 - polyhydric alcohol metabolic process - polyol metabolic process - polyol metabolism - - - - - - - - - - - - GO:0019752 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). - GO:0019752 - carboxylic acid metabolic process - carboxylic acid metabolism - - - - - - - - - - - - - 4477 "oxygen binding" - - - - - - GO:0019825 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with oxygen (O2). - GO:0019825 - cytochrome P450 - oxygen binding - - - - - - - - - - - - Cytolysis - - - - - - GO:0019835 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The rupture of cell membranes and the loss of cytoplasm. - GO:0019835 - autolysin - bacteriocin - bacteriolytic toxin - cytolysis - holin - lysin - lysis - necrosis - - - - - - - - - - - - GO:0019836 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.; - GO:0019836 - haemolysis in host - hemolysin - hemolysis by symbiont of host RBCs - hemolysis by symbiont of host erythrocytes - hemolysis by symbiont of host red blood cells - regulation of cytolysis of host cells by symbiont - - - - - - - - - - - - - GO:0019843 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with ribosomal RNA. - GO:0019843 - rRNA binding - - - - - - - - - - - - Flagellum - - - - - - GO:0008223 - - - - - - GO:0019861 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Long whiplike or feathery structures borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium. - GO:0019861 - flagellum - - - - - - - - - - - - GO:0019866 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The inner, i.e. lumen-facing, lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites. - GO:0019866 - organelle inner membrane - - - - - - - - - - - - - GO:0019867 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites. - GO:0019867 - outer membrane - - - - - - - - - - - - GO:0019877 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. - GO:0019877 - diaminopimelate anabolism - diaminopimelate biosynthesis - diaminopimelate biosynthetic process - diaminopimelate formation - diaminopimelate synthesis - - - - - - - - - - - - GO:0019898 - - - - - - GO:0030396 - - - - - - Peripheral_membrane_protein - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region. - GO:0019898 - extrinsic to membrane - peripheral membrane protein - - - - - - - - - - - - - GO:0020037 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. - GO:0020037 - haem binding - heme binding - - - - - - - - - - - - GO:0022891 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Enables the transfer of a specific substance or group of related substances from one side of a membrane to the other. - GO:0022891 - substrate-specific transmembrane transporter - - - - - - - - - - - - - Electron_transport_chain - - - - - - GO:0022900 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. - GO:0022900 - electron transport chain - - - - - - - - - - - - - Electron_transfer - - - - - - GO:0022904 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. - 6-phosphofructokinase reduction - GO:0022904 - dihydrobiopterin reduction - dihydrolipoamide reduction - dihydrolipoylprotein reduction - dihydropteridine reduction - electron transfer - other pathways of electron transport - oxidized glutathione reduction - protein-disulfide reduction - respiratory electron transport chain - - - - - - - - - - - - - GO:0030001 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells by means of some external agent such as a transporter or pore. - GO:0030001 - heavy metal ion transport - metal ion transport - - - - - - - - - - - - GO:0030004 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of monovalent inorganic cations at the level of a cell. - GO:0030004 - cellular monovalent inorganic cation homeostasis - - - - - - - - - - - - GO:0030026 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process involved in the maintenance of an internal equilibrium of manganese ions at the level of a cell. - GO:0030026 - cellular manganese ion homeostasis - manganese homeostasis - - - - - - - - - - - - - 1.1.1.37 - - - - - - 19541 "L-malate dehydrogenase activity" - - - - - - GO:0030060 - - - - - - MALATE-DEH-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+. Also oxidizes some other 2-hydroxydicarboxylic acids. - GO:0030060 - L-malate dehydrogenase - L-malate-NAD+ oxidoreductase - MDH - NAD-L-malate dehydrogenase - NAD-dependent malate dehydrogenase - NAD-dependent malic dehydrogenase - NAD-linked malate dehydrogenase - NAD-malate dehydrogenase - NAD-malic dehydrogenase - NAD-specific malate dehydrogenase - malate dehydrogenase - malic acid dehydrogenase - malic dehydrogenase - oxidoreductase - - - - - - - - - - - - GO:0017167 - - - - - - GO:0030126 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. - COPI vesicle coat - GO:0030126 - coatomer - - - - - - - - - - - - - GO:0030145 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with manganese (Mn) ions. - GO:0030145 - manganese binding - manganese ion binding - - - - - - - - - - - - - GO:0030150 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. - GO:0030150 - mitochondrial matrix protein import - mitochondrial translocation - protein import into mitochondrial matrix - protein transport into mitochondrial matrix - - - - - - - - - - - - - GO:0030151 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with molybdenum (Mo) ions. - GO:0030151 - molybdenum binding - molybdenum ion binding - - - - - - - - - - - - - GO:0030152 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of a bacteriocin, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary. - GO:0030152 - bacteriocin anabolism - bacteriocin biosynthesis - bacteriocin biosynthetic process - bacteriocin formation - bacteriocin synthesis - - - - - - - - - - - - GO:0030153 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process that mediates resistance to a bacteriocin: any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary.; - GO:0030153 - bacteriocin immunity - - - - - - - - - - - - Cellular_differentiation - - - - - - GO:0030154 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate. - GO:0030154 - cell differentiation - - - - - - - - - - - - - GO:0030163 - - - - - - Protein_catabolism - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.; - GO:0030163 - pheromone catabolic process - pheromone catabolism - protein breakdown - protein catabolic process - protein catabolism - protein degradation - - - - - - - - - - - - - GO:0030170 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. - GO:0030170 - pyridoxal phosphate binding - - - - - - - - - - - - - GO:0030234 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Modulates the activity of an enzyme. - GO:0030234 - catalytic regulator - enzyme modulator - enzyme regulator - - - - - - - - - - - - GO:0016179 - - - - - - GO:0030245 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. - GO:0030245 - cellulose breakdown - cellulose catabolic process - cellulose catabolism - cellulose degradation - - - - - - - - - - - - - GO:0030246 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any carbohydrate, any of a group of organic compounds based of the general formula Cx(H2O)y. - GO:0030246 - carbohydrate binding - selectin - - - - - - - - - - - - - GO:0030254 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which proteins are transferred into the extracellular milieu or directly into host cells by the bacterial type III secretion system; secretion occurs in a continuous process without the distinct presence of periplasmic intermediates and does not involve proteolytic processing of secreted proteins. - GO:0030254 - protein secretion by the T3S - protein secretion by the T3SS - protein secretion by the TTSS - protein secretion by the type III protein secretion system - protein secretion by the type III secretion system - type III protein secretion system - - - - - - - - - - - - - GO:0030257 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A complex of approximately 20 proteins, most of which are located in the cytoplasmic membrane that carries out protein secretion in the bacterial type III secretion system; type III secretion also requires a cytoplasmic, probably membrane-associated ATPase. - GO:0030257 - T3SS complex - TTSS complex - type III protein secretion system complex - - - - - - - - - - - - GO:0030259 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Covalent attachment of a glycosyl residue to a lipid molecule. - GO:0030259 - lipid glycosylation - - - - - - - - - - - - - - GO:0000068 - - - - - - GO:0030261 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. - GO:0030261 - chromosome condensation - - - - - - - - - - - - 5-FORMYL-THF-CYCLO-LIGASE-RXN - - - - - - 6.3.3.2 - - - - - - GO:0019006 - - - - - - GO:0030272 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 5-formyltetrahydrofolate = ADP + phosphate + 5,10-methenyltetrahydrofolate. - 5 10-methenyltetrahydrofolate synthetase - 5-Formyltetrahydrofolate cyclodehydrase - 5-formyltetrahydrofolate cyclo-ligase - 5-formyltetrahydrofolate cyclodehydrase - GO:0030272 - formyltetrahydrofolic cyclodehydrase - methenyl-THF synthetase - - - - - - - - - - - - - GO:0030288 - - - - - - Periplasmic_space - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin cell wall. - GO:0030288 - outer membrane bounded periplasmic space - outer membrane-bounded periplasmic space - outer membrane-enclosed periplasmic space - - - - - - - - - - - - GO:0030388 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis. - GO:0030388 - fructose 1 6-bisphosphate metabolism - fructose 1,6-bisphosphate metabolic process - - - - - - - - - - - - - GO:0030401 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Functions to prevent the termination of RNA synthesis. Acts as a regulatory device, e.g. in phage lambda, enabling a terminator to be masked from RNA polymerase so that distal genes can be expressed.; - GO:0030401 - transcription antiterminator - transcriptional antiterminator - - - - - - - - - - - - GO:0030414 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds. - GO:0030414 - peptidase inhibitor - protease inhibitor - - - - - - - - - - - - GO:0030420 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.; - GO:0030420 - establishment of competence for transformation - - - - - - - - - - - - - GO:0030435 - - - - - - Sporogenesis - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. - GO:0030435 - cellular spore formation by sporulation - spore biosynthesis - spore differentiation - spore formation - sporulation resulting in formation of a cellular spore - - - - - - - - - - - - GO:0030436 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species. - GO:0030436 - asexual spore formation - asexual sporulation - mitotic spore formation - mitotic sporulation - - - - - - - - - - - - - GO:0030528 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor. - GO:0030528 - transcription regulator - transcriptional regulator - - - - - - - - - - - - GO:0030529 - - - - - - Ribonucleoprotein - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A macromolecular complex containing both protein and RNA molecules. - GO:0030529 - RNA-protein complex - RNP - protein-RNA complex - ribonucleoprotein - ribonucleoprotein complex - - - - - - - - - - - - 4.2.2.2 - - - - - - 4.2.2.2-RXN - - - - - - GO:0030570 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. - GO:0030570 - PGA lyase - PPase-N - alpha-1 4-D-endopolygalacturonic acid lyase - endo-alpha-1 4-polygalacturonic acid lyase - endogalacturonate transeliminase - endopectin methyltranseliminase - lyase - pectate lyase - pectate transeliminase - pectic acid lyase - pectic acid transeliminase - pectic lyase - pectin trans-eliminase - polygalacturonate lyase - polygalacturonic acid lyase - polygalacturonic acid trans-eliminase - polygalacturonic transeliminase - - - - - - - - - - - - - 1.1.1.267 - - - - - - DXPREDISOM-RXN - - - - - - GO:0030604 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP+ = 1-deoxy-D-xylulose 5-phosphate + NADPH + H+; catalyzes the formation of 2-C-methyl-D-erythritol from 1-deoxy-D-xylulose-5-phosphate as the second step in the non-mevalonate pathway for terpenoid synthesis. - 1-deoxy-D-xylulose-5-phosphate isomeroreductase - 1-deoxy-D-xylulose-5-phosphate reductoisomerase - 1-deoxyxylulose-5-phosphate reductoisomerase - 2-C-methyl-D-erythritol-4-phosphate:NADP+ oxidoreductase - 2C-methyl-D-erythritol-4-phosphate synthase - DOXP reductoisomerase - DXP-reductoisomerase - GO:0030604 - - - - - - - - - - - - GO:0030612 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: arsenate + thioredoxin = arsenite + thioredoxin disulfide. Thioredoxin functions as the electron donor for arsenate reduction. The electron flow therefore is NADPH -> thioredoxin reductase -> thioredoxin -> arsenate reductase. - GO:0030612 - arsenate reductase (thioredoxin) - - - - - - - - - - - - - GO:0030655 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins. - GO:0030655 - beta-lactam antibiotic breakdown - beta-lactam antibiotic catabolic process - beta-lactam antibiotic catabolism - beta-lactam antibiotic degradation - - - - - - - - - - - - - GO:0030674 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with two or more protein molecules, or a protein and another macromolecule or complex, simultaneously, thereby physically linking the bound proteins or complexes to each other. - GO:0030674 - protein binding, bridging - protein-protein adaptor - - - - - - - - - - - - GO:0030955 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with potassium (K+) ions. - GO:0030955 - potassium ion binding - - - - - - - - - - - - - GO:0030976 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with thiamin pyrophosphate, the diphosphoric ester of thiamin. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases. - GO:0030976 - TPP binding - aneurine pyrophosphate binding - cocarboxylase binding - diphosphothiamin binding - thiamin pyrophosphate binding - thiamine pyrophosphate binding - - - - - - - - - - - - - GO:0030983 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. - GO:0030983 - mismatched DNA binding - - - - - - - - - - - - - 2.8.1.7 - - - - - - GO:0031071 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine. - GO:0031071 - IscS - L-cysteine:enzyme cysteine sulfurtransferase - NIFS - NifS - SufS - cysteine desulfurase - cysteine desulfurylase - - - - - - - - - - - - - GO:0031072 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectvely with a heat shock protein, any protein synthesized or activated in response to heat shock. - GO:0031072 - heat shock protein binding - - - - - - - - - - - - - - GO:0031119 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The intramolecular conversion of uridine to pseudouridine in a tRNA molecule. - GO:0031119 - tRNA pseudouridine synthesis - - - - - - - - - - - - - GO:0031160 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The specialized envelope lying outside the cell membrane of a spore. - GO:0031160 - spore coat - spore wall - - - - - - - - - - - - - GO:0031167 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule. - GO:0031167 - rRNA methylation - - - - - - - - - - - - - 3.2.1.8 - - - - - - 3.2.1.8-RXN - - - - - - GO:0031176 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of 1,4-beta-D-xylosidic linkages in xylans. - 1 4-beta-D-xylan xylanohydrolase - 1 4-beta-xylan xylanohydrolase - 4-xylanohydrolase - GO:0031176 - beta-1 4-xylan xylanohydrolase - beta-1 4-xylanase - beta-D-xylanase - beta-xylanase - endo-1 4-b-xylanase - endo-1 4-beta-D-xylanase - endo-1 4-xylanase - endo-1,4-beta-xylanase - endo-beta-1 4-xylanase - xylanase - - - - - - - - - - - - - GO:0031177 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate). - GO:0031177 - phosphopantetheine binding - - - - - - - - - - - - - 3.2.1.89 - - - - - - 3.2.1.89-RXN - - - - - - GO:0031218 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of 1,4-beta-D-galactosidic linkages in arabinogalactans. - GO:0031218 - arabinogalactan 4-beta-D-galactanohydrolase - arabinogalactan endo-1,4-beta-galactosidase - arabinogalactanase - endo-1 4-beta-galactanase - galactanase - - - - - - - - - - - - GO:0031224 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.; - GO:0031224 - intrinsic to membrane - - - - - - - - - - - - - GO:0031225 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane. - GO:0031225 - anchored to membrane - - - - - - - - - - - - - - GO:0031388 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of introducing one or more phosphate groups into an organic acid. - GO:0031388 - organic acid phosphorylation - - - - - - - - - - - - GO:0031402 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with sodium ions (Na+).; - GO:0031402 - sodium ion binding - - - - - - - - - - - - GO:0031403 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with lithium ions (Li+). - GO:0031403 - lithium ion binding - - - - - - - - - - - - - GO:0031405 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with lipoic acid, 1,2-dithiolane-3-pentanoic acid.; - GO:0031405 - lipoic acid binding - - - - - - - - - - - - - GO:0031554 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate, extent, or location of transcription termination. Transcription termination is the process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. - GO:0031554 - regulation of transcription termination - - - - - - - - - - - - GO:0031564 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond a termination site.; - GO:0031564 - transcription antitermination - transcriptional readthrough - - - - - - - - - - - - - 156581 "Methylation" - - - - - - 448582 "Methylation" - - - - - - 469711 "Methylation" - - - - - - 487423 "Methylation" - - - - - - 507378 "Methylation" - - - - - - 517897 "Methylation" - - - - - - 526665 "Methylation" - - - - - - 531496 "Methylation" - - - - - - 536886 "Methylation" - - - - - - 542212 "Methylation" - - - - - - 547566 "Methylation" - - - - - - 552526 "Methylation" - - - - - - 557763 "Methylation" - - - - - - 568775 "Methylation" - - - - - - 581978 "Methylation" - - - - - - 586029 "Methylation" - - - - - - 592837 "Methylation" - - - - - - 595589 "Methylation" - - - - - - 597447 "Methylation" - - - - - - 598211 "Methylation" - - - - - - 599770 "Methylation" - - - - - - 600689 "Methylation" - - - - - - 602456 "Methylation" - - - - - - GO:0032259 - - - - - - Methylation - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a methyl group is covalently attached to a molecule. - GO:0032259 - methylation - - - - - - - - - - - - GO:0032324 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. - GO:0032324 - molybdopterin cofactor anabolism - molybdopterin cofactor biosynthesis - molybdopterin cofactor biosynthetic process - molybdopterin cofactor formation - molybdopterin cofactor synthesis - - - - - - - - - - - - - GO:0032549 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose. - GO:0032549 - ribonucleoside binding - - - - - - - - - - - - - GO:0032776 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule. - DNA methylation on cytosine - GO:0032776 - cytosine methylation - - - - - - - - - - - - GO:0032968 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that activates or increases the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II. - GO:0032968 - positive regulation of RNA elongation from RNA polymerase II promoter - positive regulation of transcription elongation from RNA polymerase II promoter - - - - - - - - - - - - GO:0033014 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. - GO:0033014 - tetrapyrrole anabolism - tetrapyrrole biosynthesis - tetrapyrrole biosynthetic process - tetrapyrrole formation - tetrapyrrole synthesis - - - - - - - - - - - - - GO:0033177 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.; - GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain - - - - - - - - - - - - - GO:0033178 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled. - GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain - - - - - - - - - - - - 1.7.1.13 - - - - - - GO:0033739 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: queuine + 2 NADP+ = 7-cyano-7-carbaguanine + 2 NADPH + 2 H+. - 7-aminomethyl-7-carbaguanine:NADP+ oxidoreductase - 7-cyano-7-deazaguanine reductase - GO:0033739 - QueF - YkvM - preQ0 oxidoreductase - preQ0 reductase - queuine synthase - queuine:NADP+ oxidoreductase - - - - - - - - - - - - - 1.8.4.12 - - - - - - 1.8.4.12-RXN - - - - - - GO:0033743 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (R)-S-oxide + thioredoxin. - GO:0033743 - MsrB - PilB - SelR - SelX - methionine S-oxide reductase - methionine sulfoxide reductase - methionine sulfoxide reductase B - pMRsr - pMSR - peptide-methionine (R)-S-oxide reductase - peptide-methionine:thioredoxin-disulfide S-oxidoreductase [methionine - selenoprotein R - - - - - - - - - - - - - 2.3.1.179 - - - - - - 2.3.1.179-RXN - - - - - - GO:0033817 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (Z)-hexadec-11-enoyl-acyl-carrier-protein + malonyl-acyl-carrier-protein = (Z)-3-oxooctadec-13-enoyl-acyl-carrier-protein + CO2 + acyl-carrier-protein. - 3-oxoacyl-acyl carrier protein synthase I - C-acyltransferase - FabF - GO:0033817 - KAS II - KASII - beta-ketoacyl-ACP synthase II - beta-ketoacyl-acyl-carrier-protein synthase II - - - - - - - - - - - - - 2.3.1.180 - - - - - - 2.3.1.180-RXN - - - - - - GO:0033818 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + malonyl-acyl-carrier-protein = acetoacyl-acyl-carrier-protein + CoA + CO2. - 3-ketoacyl-acyl carrier protein synthase III - 3-oxoacyl:ACP synthase III - FabH - GO:0033818 - KAS III - KASIII - acetyl-CoA:malonyl-acyl-carrier-protein C-acyltransferase - beta-ketoacyl synthase III - beta-ketoacyl-ACP synthase III - beta-ketoacyl-acyl carrier protein synthase III - beta-ketoacyl-acyl-carrier-protein synthase III - - - - - - - - - - - - - 2.7.4.22 - - - - - - 2.7.4.22-RXN - - - - - - GO:0033862 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + UMP = ADP + UDP.; - ATP:UMP phosphotransferase - GO:0033862 - PyrH - SmbA - UMP kinase - UMP-kinase - UMPK - uridine monophosphate kinase - - - - - - - - - - - - - 3.2.1.64 - - - - - - 3.2.1.64-RXN - - - - - - GO:0033912 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: hydrolysis of 2,6-beta-D-fructofuranan, to remove successive disaccharide residues as levanbiose, i.e. 6-(beta-D-fructofuranosyl)-D-fructose, from the end of the chain. - 2 6-beta-D-fructan 6-beta-D-fructofuranosylfructohydrolase - 2 6-beta-D-fructan 6-levanbiohydrolase - 2 6-beta-D-fructofuranan - 2,6-beta-fructan 6-levanbiohydrolase - GO:0033912 - beta-2 6-fructan-6-levanbiohydrolase - levanbiose-producing levanase - - - - - - - - - - - - - 3.2.1.96 - - - - - - 3.2.1.96-RXN - - - - - - GO:0033925 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: endohydrolysis of the N,N'-diacetylchitobiosyl unit in high-mannose glycopeptides and glycoproteins containing the -[Man(GlcNAc)2]Asn-structure. One N-acetyl-D-glucosamine residue remains attached to the protein; the rest of the oligosaccharide is released intact. - 1 4-N-acetyl-beta-glucosaminohydrolase - GO:0033925 - N N'-diacetylchitobiosyl beta-N-acetylglucosaminidase - activity - di-N-acetylchitobiosyl beta-N-acetylglucosaminidase - endo-N-acetyl-beta-D-glucosaminidase - endo-N-acetyl-beta-glucosaminidase - endo-beta-N-acetylglucosaminidase - endo-beta-N-acetylglucosaminidase D - endo-beta-N-acetylglucosaminidase F - endo-beta-N-acetylglucosaminidase H - endo-beta-N-acetylglucosaminidase L - endo-beta-acetylglucosaminidase - endoglycosidase H - endoglycosidase S - mannosyl-glycoprotein 1 4-N-acetamidodeoxy-beta-D-glycohydrolase - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase - - - - - - - - - - - - - 3.2.1.136 - - - - - - 3.2.1.136-RXN - - - - - - GO:0033940 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: endohydrolysis of 1,4-beta-D-xylosyl links in some glucuronoarabinoxylans. - GO:0033940 - endoarabinoxylanase - feraxan endoxylanase - feraxanase - glucuronoarabinoxylan 1 4-beta-D-xylanohydrolase - glucuronoarabinoxylan endo-1,4-beta-xylanase - glucuronoxylan xylanohydrolase - glucuronoxylan xylohydrolase - glucuronoxylanase - - - - - - - - - - - - - 3.5.2.17 - - - - - - 3.5.2.17-RXN - - - - - - GO:0033971 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate. - 5-hydroxyisourate amidohydrolase - 5-hydroxyisourate hydrolase - GO:0033971 - HIUHase - hydroxyisourate hydrolase - - - - - - - - - - - - - 6.3.2.28 - - - - - - 6.3.2.28-RXN - - - - - - GO:0034026 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + an L-amino acid + an L-amino acid = ADP + phosphate + L-aminoacyl-L-amino acid. - GO:0034026 - L-amino acid alpha-ligase - L-amino acid ligase - L-amino-acid alpha-ligase - YwfE - bacilysin synthetase - - - - - - - - - - - - GO:0035251 - - - - - - PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a glucosyl group from UDP-glucose to an acceptor molecule. - GO:0035251 - UDP-glucosyltransferase - - - - - - - - - - - - - GO:0042026 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. - GO:0042026 - heat shock protein - protein refolding - - - - - - - - - - - - - GO:0042126 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. - GO:0042126 - nitrate metabolic process - nitrate metabolism - - - - - - - - - - - - - GO:0042128 - - - - - - PWY-381 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances. - GO:0042128 - assimilatory nitrate reduction - nitrate assimilation - - - - - - - - - - - - 3.1.3.11 - - - - - - 9272 "fructose 1,6-bisphosphate 1-phosphatase activity" - - - - - - F16BDEPHOS-RXN - - - - - - GO:0042132 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate. - D-fructose 1 6-diphosphatase - D-fructose-1 6-bisphosphate 1-phosphohydrolase - D-fructose-1 6-bisphosphate phosphatase - FBPase - GO:0042132 - fructose 1 6-bisphosphatase - fructose 1 6-bisphosphate phosphatase - fructose 1 6-diphosphatase - fructose 1 6-diphosphate phosphatase - fructose 1,6-bisphosphate 1-phosphatase - fructose bisphosphate phosphatase - fructose diphosphatase - fructose diphosphate phosphatase - fructose-1 6-bisphosphatase - fructose-bisphosphatase - hexose bisphosphatase - hexose diphosphatase - hexosediphosphatase - - - - - - - - - - - - 174587 "nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]" - - - - - - 174741 "ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron" - - - - - - 174786 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - 431225 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - 431239 "ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron" - - - - - - 442768 "nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]" - - - - - - 453778 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - 473932 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - 482858 "nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]" - - - - - - 492474 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - 503010 "nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]" - - - - - - 510407 "ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex" - - - - - - GO:0042158 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein moiety consists of a lipid or lipids. - GO:0042158 - lipoprotein anabolism - lipoprotein biosynthesis - lipoprotein biosynthetic process - lipoprotein formation - lipoprotein synthesis - - - - - - - - - - - - - GO:0042173 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of spore formation. - GO:0042173 - regulation of sporulation resulting in formation of a cellular spore - - - - - - - - - - - - - GO:0042242 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the conversion of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide. - CobB - GO:0042242 - cobyrinic acid a,c-diamide synthase - - - - - - - - - - - - - GO:0042245 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process by which damaged RNA can be repaired. - GO:0042245 - RNA repair - - - - - - - - - - - - GO:0007046 - - - - - - GO:0042254 - - - - - - Ribosome_biogenesis - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis. - GO:0042254 - ribosomal chaperone - ribosome biogenesis - ribosome biogenesis and assembly - - - - - - - - - - - - GO:0042274 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The formation of the constituents of the small ribosomal subunit, their assembly, and their transport to the sites of protein synthesis. - GO:0042274 - ribosomal small subunit biogenesis - ribosomal small subunit biogenesis and assembly - - - - - - - - - - - - - GO:0042278 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). - GO:0042278 - purine metabolic process - purine metabolism - purine nucleoside metabolic process - purine nucleoside metabolism - - - - - - - - - - - - 5.4.3.8 - - - - - - GO:0042286 - - - - - - GSAAMINOTRANS-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate. - 4 5-aminomutase - GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase - glutamate-1-semialdehyde aminotransferase - - - - - - - - - - - - 6-CARBOXYHEXANOATE--COA-LIGASE-RXN - - - - - - 6.2.1.14 - - - - - - GO:0042410 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 6-carboxyhexanoate + CoA = AMP + diphosphate + 6-carboxyhexanoyl-CoA. - 6-carboxyhexanoate-CoA ligase - 6-carboxyhexanoate:CoA ligase - 6-carboxyhexanoyl-CoA synthetase - GO:0042410 - pimeloyl-CoA synthetase - pimelyl-CoA synthetase - - - - - - - - - - - - - GO:0042450 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine. - GO:0042450 - arginine anabolism via ornithine - arginine biosynthetic process via ornithine - arginine formation via ornithine - arginine synthesis via ornithine - - - - - - - - - - - - - 3.5.1.88 - - - - - - 3.5.1.88-RXN - - - - - - GO:0042586 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide. - GO:0042586 - PDF - formyl-L-methionyl peptide amidohydrolase - peptide deformylase - polypeptide deformylase - - - - - - - - - - - - GO:0005620 - - - - - - GO:0042597 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or inner membrane and cell wall (Fungi). - GO:0042597 - periplasm - periplasmic space - - - - - - - - - - - - - GO:0042601 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Portion of the cell formed during the process of bacterial sporulation that will ultimately become the core of the endospore. An endospore is a type of dormant cell that is resistant to adverse conditions. - GO:0042601 - endospore-forming forespore - - - - - - - - - - - - - 78033 "ATPase activity, coupled to transmembrane movement of substances" - - - - - - GO:0042626 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate to directly drive the active transport of a substance across a membrane. - ABC transporter - ABC-type efflux permease - ABC-type efflux porter - ABC-type uptake permease - ATP binding cassette transporter - ATP-binding cassette transporter - ATPase activity, coupled to transmembrane movement of substances - GO:0042626 - mating pheromone exporter - - - - - - - - - - - - GO:0042651 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The pigmented membrane of any thylakoid. - GO:0042651 - thylakoid membrane - - - - - - - - - - - - GO:0042732 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide. - D-xylose metabolic process - D-xylose metabolism - GO:0042732 - - - - - - - - - - - - GO:0042742 - - - - - - GO:0042830 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. - GO:0042742 - antibacterial peptide - defence response to bacteria - defence response to bacterium - defense response to bacteria - defense response to bacterium - - - - - - - - - - - - 448515 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 469645 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 487357 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 507308 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 517323 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 526205 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 531091 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 536465 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 542168 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 547528 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 552119 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 568326 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 581528 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 592415 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 599614 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - 77102 "Breakdown of hydrogen peroxide to water and molecular oxygen" - - - - - - GO:0042744 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). - GO:0042744 - H2O2 catabolic process - H2O2 scavenging - detoxification of H2O2 - detoxification of hydrogen peroxide - hydrogen peroxide breakdown - hydrogen peroxide catabolic process - hydrogen peroxide catabolism - hydrogen peroxide degradation - hydrogen peroxide removal - hydrogen peroxide scavenging - - - - - - - - - - - - GO:0042763 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A cell or part of the cell that constitutes an early developmental stage of a spore, a small reproductive body that is highly resistant to desiccation and heat and is capable of growing into a new organism, produced especially by certain bacteria, fungi, algae, and nonflowering plants. - GO:0042763 - forespore - intracellular immature spore - - - - - - - - - - - - - GO:0042773 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP. - ATP synthesis coupled electron transport - GO:0042773 - - - - - - - - - - - - - GO:0042777 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The transport of protons across the plasma membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. - ATP synthesis coupled proton transport - GO:0042777 - plasma membrane ATP synthesis coupled proton transport - - - - - - - - - - - - GO:0042779 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both. - GO:0042779 - removal of tRNA 3'-trailer sequence - tRNA 3'-end cleavage - tRNA 3'-trailer cleavage - - - - - - - - - - - - - 3.1.26.11-RXN - - - - - - GO:0042781 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule. - 3 tRNase - 3' tRNA processing endoribonuclease - 3' tRNase - 3'-tRNA processing endoribonuclease - GO:0042781 - RNase Z - ribonuclease Z - tRNA 3 endonuclease - tRNA 3' endonuclease - tRNAse Z - tRNase Z - - - - - - - - - - - - - GO:0042802 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an identical protein or proteins. - GO:0042802 - identical protein binding - protein homopolymerization - - - - - - - - - - - - - - GO:0042803 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an identical protein to form a homodimer. - GO:0042803 - dimerization - protein homodimerization - - - - - - - - - - - - GO:0042823 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. - GO:0042823 - active vitamin B6 biosynthesis - active vitamin B6 biosynthetic process - pyridoxal phosphate anabolism - pyridoxal phosphate biosynthesis - pyridoxal phosphate biosynthetic process - pyridoxal phosphate formation - pyridoxal phosphate synthesis - - - - - - - - - - - - - 3.2.1.73 - - - - - - 3.2.1.73-RXN - - - - - - GO:0042972 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of 1,4-beta-D-glucosidic linkages in beta-D-glucans containing 1,3- and 1,4-bonds. - 1 3-1 4-beta-D-glucan 4-glucanohydrolase - 1 3-1 4-beta-glucan 4-glucanohydrolase - 1 3;1 4-beta-glucan 4-glucanohydrolase - 1 3;1 4-beta-glucan endohydrolase - 4-glucanohydrolase - GO:0042972 - beta-glucanase - endo-beta-1 3-1 4 glucanase - lichenase - licheninase - mixed linkage beta-glucanase - - - - - - - - - - - - GO:0030376 - - - - - - GO:0043022 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any part of a ribosome. - GO:0043022 - ribosome binding - ribosome receptor - - - - - - - - - - - - GO:0043039 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. - GO:0043039 - aminoacyl-tRNA biosynthesis - aminoacyl-tRNA biosynthetic process - tRNA aminoacylation - tRNA charging - - - - - - - - - - - - GO:0043064 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a flagellum, a long thin projection from a cell, used in movement.; - GO:0043064 - flagellum organisation - flagellum organization - flagellum organization and biogenesis - - - - - - - - - - - - GO:0043086 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops or reduces the activity of an enzyme. - GO:0043086 - down regulation of enzyme - down-regulation of enzyme - downregulation of enzyme - inhibition of enzyme - negative regulation of catalytic - negative regulation of enzyme - - - - - - - - - - - - Binary_fission - - - - - - GO:0043093 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process in which two similarly sized and shaped cells are formed by the division of one cell, the process by which most bacteria reproduce. - GO:0043093 - binary fission - - - - - - - - - - - - - GO:0043094 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells. - GO:0043094 - cellular metabolic compound salvage - - - - - - - - - - - - - GO:0043101 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that generates a purine, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis. - GO:0043101 - purine salvage - - - - - - - - - - - - 1.3.1.76 - - - - - - DIMETHUROPORDEHYDROG-RXN - - - - - - GO:0043115 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: precorrin-2 (dihydrosirohydrochlorin) + NAD+ = sirohydrochlorin + NADH + H+.; - 1 3-dimethyluroporphyrinogen III dehydrogenase - CysG - GO:0043115 - Met8p - SirC - dihydrosirohydrochlorin dehydrogenase - precorrin-2 dehydrogenase - precorrin-2 oxidase - precorrin-2:NAD+ oxidoreductase - siroheme synthase - - - - - - - - - - - - - GO:0043140 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + H2O = ADP + phosphate; drives the unwinding of the DNA helix in the direction 3' to 5'. - ATP-dependent 3' to 5' DNA helicase - ATP-dependent 3'-5' DNA helicase - GO:0043140 - - - - - - - - - - - - GO:0043169 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. - GO:0043169 - cation binding - - - - - - - - - - - - - GO:0043190 - - - - - - GO:0043191 - - - - - - GO:0043192 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter. - ABC-type efflux permease - ABC-type efflux porter - ABC-type uptake permease - ATP-binding cassette (ABC) transporter complex - ATP-binding cassette transporter - GO:0043190 - mating pheromone exporter - - - - - - - - - - - - - - GO:0043211 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate to directly drive the transport of carbohydrates across a membrane. - GO:0043211 - carbohydrate ABC transporter - carbohydrate-transporting ATPase - - - - - - - - - - - - - GO:0043213 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of a bacteriocin into, out of, within or between cells by means of some external agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain. - GO:0043213 - bacteriocin transport - - - - - - - - - - - - GO:0043234 - - - - - - Protein_complex - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any macromolecular complex composed of two or more polypeptide subunits, which may or may not be identical. Protein complexes may have other associated non-protein prosthetic groups, such as nucleotides, metal ions or carbohydrate groups.; - GO:0043234 - protein complex - protein-protein complex - - - - - - - - - - - - - GO:0043565 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. - GO:0043565 - sequence specific DNA binding - sequence-specific DNA binding - - - - - - - - - - - - - GO:0043590 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The region of a bacterial cell to which the DNA is confined.; - GO:0043590 - bacterial nucleoid - - - - - - - - - - - - - GO:0043594 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The outer membrane around a bacterial endospore, located between the endospore cortex and endospore coat. - GO:0043594 - outer endospore membrane - - - - - - - - - - - - GO:0043595 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A layer surrounding a bacterial endospore found inside the outer endospore membrane, but outside the membrane surrounding the endospore core. It consists of peptidoglycan of a different chemical nature than that found in vegetative cell walls which results in less cross-linking of peptidoglycan. - GO:0043595 - endospore cortex - - - - - - - - - - - - - 5.3.2.- - - - - - - GO:0043715 - - - - - - R82-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P). - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase - DK-MTP-1-P enolase - E-1 - GO:0043715 - MasA - mtnW - - - - - - - - - - - - - GO:0043716 - - - - - - R83-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Cataysis of the dephosphorylation of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-P) to 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). - 2-hydroxy-3-keto-5-methylthio-phosphopentene phosphatase - 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase - GO:0043716 - HK-MTPenyl-1-P phosphatase - - - - - - - - - - - - - 3.1.21.7 - - - - - - 3.1.21.7-RXN - - - - - - GO:0043737 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate. - DNase V - Escherichia coli endodeoxyribonuclease V - GO:0043737 - deoxyribonuclease V - endodeoxyribonuclease V - endonuclease V - - - - - - - - - - - - - 2.3.1.168 - - - - - - 2.3.1.168-RXN - - - - - - GO:0043754 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine. - GO:0043754 - activity - dihydrolipoyl transacylase - dihydrolipoyllysine-residue (2-methylpropanoyl)transferase - enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA - - - - - - - - - - - - 4.4.1.21 - - - - - - GO:0019138 - - - - - - GO:0043768 - - - - - - RIBOSYLHOMOCYSTEINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-(5-deoxy-D-ribos-5-yl)-L-homocysteine = L-homocysteine + (S)-4,5-dihydroxypentan-2,3-dione. - 3.2.1.148 - GO:0043768 - LuxS - S-ribosylhomocysteinase - S-ribosylhomocysteine lyase - homocysteine-lyase 5-dihydroxypentan-2 3-dione-forming] - ribosylhomocysteinase - - - - - - - - - - - - 1.4.3.19 - - - - - - 1.4.3.19-RXN - - - - - - GO:0043799 - - - - - - RXN-8672 - - - - - - RXN-8673 - - - - - - RXN-8674 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reactions: (1) glycine + H2O + O2 = glyoxylate + NH3 + H2O2 (2) D-alanine + H2O + O2 = pyruvate + NH3 + H2O2 (3) sarcosine + H2O + O2 = glyoxylate + methylamine + H2O2 (4) N-ethylglycine + H2O + O2 = glyoxylate + ethylamine + H2O2. - GO:0043799 - glycine oxidase - glycine:oxygen oxidoreductase - - - - - - - - - - - - - 4.1.2.- - - - - - - GO:0043801 - - - - - - R10-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribulose 5-phosphate + formaldehyde = D-arabino-3-hexulose 6-phosphate. - GO:0043801 - hexulose-6-phosphate synthase - - - - - - - - - - - - - 4.2.1.109 - - - - - - GO:0043809 - - - - - - R145-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-methyl-5-thio-D-ribulose 1-phosphate = 5-(methylthio)-2,3-dioxopentyl phosphate + H2O. - 1-PMT-ribulose dehydratase - GO:0043809 - S-methyl-5-thio-D-ribulose-1-phosphate 3-dioxopentyl-phosphate-forming] - S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase - S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase 3-dioxopentyl-phosphate-forming] - methylthioribulose 1-phosphate dehydratase - methylthioribulose-1-phosphate dehydratase - - - - - - - - - - - - - 2.1.2.- - - - - - - GO:0043815 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: formate + ATP + 5'-phospho-ribosylglycinamide = 5'-phosphoribosyl-N-formylglycinamide + ADP + diphosphate. - 5'-phosphoribosylglycinamide transformylase 2 - GAR transformylase 2 - GART 2 - GO:0043815 - formate-dependent GAR transformylase - phosphoribosylglycinamide formyltransferase 2 - - - - - - - - - - - - 4.4.1.19 - - - - - - 4.4.1.19-RXN - - - - - - GO:0043817 - - - - - - R228-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (2R)-O-phospho-3-sulfolactate = sulfite + phosphoenolpyruvate.; - GO:0043817 - PSL synthase - phosphosulfolactate synthase - sulfo-lyase - synthase - - - - - - - - - - - - - 1.2.1.59 - - - - - - GAPDHSYNEC-RXN - - - - - - GO:0043891 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD(P)+ = 3-phospho-D-glyceroyl phosphate + NAD(P)H + H+. - D-glyceraldehyde oxidoreductase - GO:0043891 - glyceraldehyde-3-phosphate dehydrogenase - glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) - triosephosphate dehydrogenase - - - - - - - - - - - - - 1.1.1.283 - - - - - - 1.1.1.283-RXN - - - - - - GO:0043892 - - - - - - RXN-8636 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: lactaldehyde + NADP+ = methylglyoxal + NADPH + H+. - GO:0043892 - Gre2 - lactaldehyde dehydrogenase - lactaldehyde:NADP+ oxidoreductase - methylglyoxal reductase (NADPH-dependent) - - - - - - - - - - - - GO:0043937 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of sporulation, the process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. - GO:0043937 - regulation of sporulation - - - - - - - - - - - - - - GO:0044237 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways by which individual cells transform chemical substances. - GO:0044237 - cellular metabolic process - cellular metabolism - intermediary metabolism - - - - - - - - - - - - - GO:0044238 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. - GO:0044238 - primary metabolic process - primary metabolism - - - - - - - - - - - - - - GO:0044249 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. - GO:0044249 - cellular anabolism - cellular biosynthesis - cellular biosynthetic process - cellular formation - cellular synthesis - - - - - - - - - - - - - - GO:0006092 - - - - - - GO:0044262 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. - GO:0044262 - cellular carbohydrate metabolic process - cellular carbohydrate metabolism - main pathways of carbohydrate metabolic process - main pathways of carbohydrate metabolism - - - - - - - - - - - - - 392499 "Metabolism of proteins" - - - - - - 448469 "Metabolism of proteins" - - - - - - 469599 "Metabolism of proteins" - - - - - - 487318 "Metabolism of proteins" - - - - - - 507269 "Metabolism of proteins" - - - - - - 517286 "Metabolism of proteins" - - - - - - 526164 "Metabolism of proteins" - - - - - - 531061 "Metabolism of proteins" - - - - - - 536443 "Metabolism of proteins" - - - - - - 542138 "Metabolism of proteins" - - - - - - 547505 "Metabolism of proteins" - - - - - - 552209 "Metabolism of proteins" - - - - - - 557676 "Metabolism of proteins" - - - - - - 568296 "Metabolism of proteins" - - - - - - 581498 "Metabolism of proteins" - - - - - - 585742 "Metabolism of proteins" - - - - - - 592395 "Metabolism of proteins" - - - - - - 595285 "Metabolism of proteins" - - - - - - 597396 "Metabolism of proteins" - - - - - - 598178 "Metabolism of proteins" - - - - - - 599777 "Metabolism of proteins" - - - - - - GO:0044267 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification. - GO:0044267 - cellular protein metabolic process - cellular protein metabolism - - - - - - - - - - - - GO:0044461 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any constituent part of flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by the transmembrane proton potential. Examples of this component are found in bacterial species. - GO:0044461 - bacterial-type flagellum part - flagellin-based flagellum part - - - - - - - - - - - - - GO:0045005 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A DNA metabolic process that prevents or corrects errors during DNA replication. Errors can be corrected either by intrinsic DNA polymerase proofreading activity or via mismatch repair. - GO:0045005 - maintenance of fidelity during DNA-dependent DNA replication - - - - - - - - - - - - 168249 "Innate Immunity Signaling" - - - - - - 448672 "Innate Immunity Signaling" - - - - - - 469811 "Innate Immunity Signaling" - - - - - - 487494 "Innate Immunity Signaling" - - - - - - 507465 "Innate Immunity Signaling" - - - - - - 517859 "Innate Immunity Signaling" - - - - - - 531464 "Innate Immunity Signaling" - - - - - - 536848 "Innate Immunity Signaling" - - - - - - 542476 "Innate Immunity Signaling" - - - - - - 547920 "Innate Immunity Signaling" - - - - - - GO:0002226 - - - - - - GO:0045087 - - - - - - Innate_immune_system - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. - GO:0045087 - innate immune response - nonspecific immune response - - - - - - - - - - - - - 3.4.11.4 - - - - - - 3.4.11.4-RXN - - - - - - GO:0045148 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the release of the N-terminal residue from a tripeptide. - GO:0045148 - alanine-phenylalanine-proline arylamidase - aminoexotripeptidase - aminotripeptidase - imidoendopeptidase - lymphopeptidase - peptidase B - peptidase T - tripeptide aminopeptidase - - - - - - - - - - - - GO:0045149 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving acetoin, 3-hydroxy-2-butanone, often as part of a fermentation pathway or for use as a carbon source. - GO:0045149 - acetoin metabolic process - acetoin metabolism - - - - - - - - - - - - - GO:0045150 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of acetoin, 3-hydroxy-2-butanone. - GO:0045150 - acetoin breakdown - acetoin catabolic process - acetoin catabolism - acetoin degradation - - - - - - - - - - - - - GO:0045151 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of acetoin, 3-hydroxy-2-butanone. - GO:0045151 - acetoin anabolism - acetoin biosynthesis - acetoin biosynthetic process - acetoin formation - acetoin synthesis - - - - - - - - - - - - - GO:0045152 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an antisigma factor, a factor which inhibits the ability of the sigma factor to function as a transcriptional initiator. - GO:0045152 - antisigma factor antagonist - antisigma factor binding - - - - - - - - - - - - GO:0045226 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures. - GO:0045226 - extracellular polysaccharide anabolism - extracellular polysaccharide biosynthesis - extracellular polysaccharide biosynthetic process - extracellular polysaccharide formation - extracellular polysaccharide synthesis - - - - - - - - - - - - - GO:0045227 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi. - GO:0045227 - capsular polysaccharide biosynthesis - capsular polysaccharide biosynthetic process - capsule polysaccharide anabolism - capsule polysaccharide biosynthesis - capsule polysaccharide biosynthetic process - capsule polysaccharide formation - capsule polysaccharide synthesis - - - - - - - - - - - - - GO:0045239 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any of the heteromeric enzymes that act in the TCA cycle. - GO:0045239 - TCA cycle enzyme complex - tricarboxylic acid cycle enzyme complex - - - - - - - - - - - - - GO:0045252 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2). - GO:0045252 - dihydrolipoamide S-succinyltransferase complex - oxoglutarate dehydrogenase complex - - - - - - - - - - - - - GO:0045261 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. - GO:0045261 - hydrogen-transporting ATP synthase F1 sector - proton-transporting ATP synthase complex, catalytic core F(1) - - - - - - - - - - - - - GO:0045263 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins. - GO:0045263 - hydrogen-transporting ATP synthase F0 sector - hydrogen-transporting ATP synthase complex coupling factor - hydrogen-transporting ATP synthase coupling factor - proton-transporting ATP synthase complex coupling factor - proton-transporting ATP synthase complex, coupling factor F(o) - - - - - - - - - - - - GO:0045449 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. - GO:0045449 - regulation of cellular transcription - - - - - - - - - - - - GO:0030503 - - - - - - GO:0045454 - - - - - - GO:0045867 - - - - - - GO:0045868 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that maintains the redox environment of a cell or compartment within a cell. - GO:0045454 - cell redox homeostasis - regulation of cell redox homeostasis - regulation of redox homeostasis - - - - - - - - - - - - GO:0045490 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. - GO:0045490 - pectin breakdown - pectin catabolic process - pectin catabolism - pectin degradation - - - - - - - - - - - - - GO:0045493 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. - GO:0045493 - xylan breakdown - xylan catabolic process - xylan catabolism - xylan degradation - - - - - - - - - - - - GO:0045717 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids. - GO:0045717 - down regulation of fatty acid biosynthetic process - down-regulation of fatty acid biosynthetic process - downregulation of fatty acid biosynthetic process - inhibition of fatty acid biosynthetic process - negative regulation of fatty acid anabolism - negative regulation of fatty acid biosynthesis - negative regulation of fatty acid biosynthetic process - negative regulation of fatty acid formation - negative regulation of fatty acid synthesis - - - - - - - - - - - - - GO:0045735 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Functions in the storage of nutritious substrates. - GO:0045735 - nutrient reservoir - storage protein - storage protein of fat body - yolk protein - - - - - - - - - - - - - GO:0045881 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that activates or increases the frequency, rate or extent of sporulation. - GO:0045881 - activation of sporulation - positive regulation of sporulation resulting in formation of a cellular spore - stimulation of sporulation - up regulation of sporulation - up-regulation of sporulation - upregulation of sporulation - - - - - - - - - - - - - - GO:0045892 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops, prevents or reduces the frequency, rate or extent of cellular DNA-dependent transcription. - GO:0045892 - down regulation of transcription DNA-dependent - down-regulation of transcription DNA-dependent - downregulation of transcription DNA-dependent - inhibition of transcription DNA-dependent - negative regulation of cellular transcription, DNA-dependent - - - - - - - - - - - - - - GO:0045893 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. - GO:0045893 - activation of transcription DNA-dependent - positive regulation of cellular transcription, DNA-dependent - stimulation of transcription DNA-dependent - up regulation of transcription DNA-dependent - up-regulation of transcription DNA-dependent - upregulation of transcription DNA-dependent - - - - - - - - - - - - - 163765 "ChREBP activates metabolic gene expression" - - - - - - 449105 "ChREBP activates metabolic gene expression" - - - - - - 470217 "ChREBP activates metabolic gene expression" - - - - - - 487903 "ChREBP activates metabolic gene expression" - - - - - - 507870 "ChREBP activates metabolic gene expression" - - - - - - 517769 "ChREBP activates metabolic gene expression" - - - - - - 526602 "ChREBP activates metabolic gene expression" - - - - - - 531509 "ChREBP activates metabolic gene expression" - - - - - - 536900 "ChREBP activates metabolic gene expression" - - - - - - 542648 "ChREBP activates metabolic gene expression" - - - - - - 547963 "ChREBP activates metabolic gene expression" - - - - - - 552533 "ChREBP activates metabolic gene expression" - - - - - - 558161 "ChREBP activates metabolic gene expression" - - - - - - 568790 "ChREBP activates metabolic gene expression" - - - - - - 581993 "ChREBP activates metabolic gene expression" - - - - - - 586040 "ChREBP activates metabolic gene expression" - - - - - - 592900 "ChREBP activates metabolic gene expression" - - - - - - 595594 "ChREBP activates metabolic gene expression" - - - - - - 597454 "ChREBP activates metabolic gene expression" - - - - - - 598220 "ChREBP activates metabolic gene expression" - - - - - - 599785 "ChREBP activates metabolic gene expression" - - - - - - 600701 "ChREBP activates metabolic gene expression" - - - - - - 602624 "ChREBP activates metabolic gene expression" - - - - - - GO:0045941 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any cellular process that activates or increases the frequency, rate or extent of transcription. - GO:0045941 - activation of transcription - positive regulation of cellular transcription - stimulation of transcription - up regulation of transcription - up-regulation of transcription - upregulation of transcription - - - - - - - - - - - - GO:0045982 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways involving purine bases.; - GO:0045982 - down regulation of purine base metabolic process - down-regulation of purine base metabolic process - downregulation of purine base metabolic process - inhibition of purine base metabolic process - negative regulation of purine base metabolic process - negative regulation of purine base metabolism - - - - - - - - - - - - GO:0046034 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. - ATP metabolic process - ATP metabolism - GO:0046034 - - - - - - - - - - - - GO:0046080 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate. - GO:0046080 - dUTP metabolic process - dUTP metabolism - - - - - - - - - - - - - GO:0046081 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate. - GO:0046081 - dUTP breakdown - dUTP catabolic process - dUTP catabolism - dUTP degradation - - - - - - - - - - - - GO:0046087 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside. - GO:0046087 - cytidine metabolic process - cytidine metabolism - - - - - - - - - - - - - GO:0046110 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. - GO:0046110 - xanthine metabolic process - xanthine metabolism - - - - - - - - - - - - - GO:0046167 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol. - GO:0046167 - glycerol-3-phosphate anabolism - glycerol-3-phosphate biosynthesis - glycerol-3-phosphate biosynthetic process - glycerol-3-phosphate formation - glycerol-3-phosphate synthesis - - - - - - - - - - - - - GO:0046168 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol. - GO:0046168 - glycerol-3-phosphate breakdown - glycerol-3-phosphate catabolic process - glycerol-3-phosphate catabolism - glycerol-3-phosphate degradation - - - - - - - - - - - - - - 2.7.1.12 - - - - - - GLUCONOKIN-RXN - - - - - - GO:0046316 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + D-gluconate = ADP + 6-phospho-D-gluconate. - ATP:D-gluconate 6-phosphotransferase - GO:0046316 - gluconate kinase - gluconokinase - - - - - - - - - - - - GO:0046341 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. It is a common intermediate in phospholipid biosynthesis. - CDP-diacylglycerol metabolic process - CDP-diacylglycerol metabolism - GO:0046341 - - - - - - - - - - - - - GO:0046348 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the breakdown of any amino sugar, sugars containing an amino group in place of a hydroxyl group. - GO:0046348 - amino sugar breakdown - amino sugar catabolic process - amino sugar catabolism - amino sugar degradation - aminosaccharide catabolic process - aminosaccharide catabolism - - - - - - - - - - - - 2.3.1.60 - - - - - - 2.3.1.81 - - - - - - AMINOGLYCOSIDE-N3-ACETYLTRANSFERASE-RXN - - - - - - GENTAMICIN-3-N-ACETYLTRANSFERASE-RXN - - - - - - GO:0016991 - - - - - - GO:0046353 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring. - 3'-aminoglycoside acetyltransferase - 3-N-aminoglycoside acetyltransferase - GO:0046353 - acetyl-CoA:2-deoxystreptamine-antibiotic N3'-acetyltransferase - acetyl-CoA:gentamicin-C N3'-acetyltransferase - activity - aminoglycoside 3-N-acetyltransferase - aminoglycoside acetyltransferase - gentamicin 3'-N-acetyltransferase - gentamicin acetyltransferase I - gentamycin 3'-N-acetyltransferase - gentamycin acetyltransferase I - - - - - - - - - - - - GO:0046373 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. - GO:0046373 - L-arabinose metabolic process - L-arabinose metabolism - - - - - - - - - - - - - GO:0046416 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids. - D-amino acid metabolic process - D-amino acid metabolism - GO:0046416 - - - - - - - - - - - - GO:0046417 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. - GO:0046417 - chorismate metabolic process - chorismate metabolism - - - - - - - - - - - - - 4.1.3.30 - - - - - - GO:0046421 - - - - - - METHYLISOCITRATE-LYASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate = pyruvate + succinate. - 2 3-tricarboxylate pyruvate-lyase - 2-methylisocitrate lyase - GO:0046421 - MICL - methylisocitrate lyase - - - - - - - - - - - - 1.17.4.3 - - - - - - GO:0046429 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + protein-disulfide = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + protein-dithiol. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative way of naming 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. - 1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase - 4-diphosphate synthase - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase - GO:0046429 - oxidoreductase - - - - - - - - - - - - - - GO:0046437 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of D-amino acids, the D-enantiomers of amino acids. - D-amino acid anabolism - D-amino acid biosynthesis - D-amino acid biosynthetic process - D-amino acid formation - D-amino acid synthesis - GO:0046437 - - - - - - - - - - - - - GO:0046439 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid. - GO:0046439 - L-cysteine metabolic process - L-cysteine metabolism - - - - - - - - - - - - GO:0046470 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. - GO:0046470 - phosphatidylcholine metabolic process - phosphatidylcholine metabolism - - - - - - - - - - - - - - 2.7.1.100 - - - - - - 5-METHYLTHIORIBOSE-KINASE-RXN - - - - - - GO:0046522 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + S5-methyl-5-thio-D-ribose = ADP + S5-methyl-5-thio-D-ribose 1-phosphate. - 5-methylthioribose kinase - ATP:S-methyl-5-thio-D-ribose 1-phosphotransferase - ATP:S5-methyl-5-thio-D-ribose 1-phosphotransferase - GO:0046522 - MTR kinase - S-methyl-5-thioribose kinase - methylthioribose kinase - - - - - - - - - - - - - 5.3.1.23 - - - - - - 5.3.1.23-RXN - - - - - - GO:0046523 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-methylthio-5-deoxy-D-ribose 1-phosphate = 5-methylthio-5-deoxy-D-ribulose 1-phosphate. - 1-PMTR isomerase - 1-phospho-5'-S-methylthioribose isomerase - 5-methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase - 5-methylthioribose-1-phosphate isomerase - GO:0046523 - MTR-1-P isomerase - S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate aldose-ketose-isomerase - S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate ketol-isomerase - S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase - S-methyl-5-thio-alpha-D-ribose-1-phosphate aldose-ketose-isomerase - S-methyl-5-thioribose-1-phosphate isomerase - methylthioribose 1-phosphate isomerase - - - - - - - - - - - - - GO:0046537 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D glycerate without requiring the cofactor 2,3-bisphosphoglycerate. - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase - GO:0046537 - PGAM-i - - - - - - - - - - - - - 1.1.1.83 - - - - - - 1.1.1.83-RXN - - - - - - GO:0046553 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R)-malate + NAD+ = pyruvate + CO2 + NADH + H+. - D-malate dehydrogenase - D-malate dehydrogenase (decarboxylating) - D-malic enzyme - GO:0046553 - bifunctional - oxidoreductase - - - - - - - - - - - - - 3.1.1.72 - - - - - - 3.1.1.72-RXN - - - - - - GO:0046555 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the deacetylation of xylans and xylo-oligosaccharides. - GO:0046555 - acetylxylan esterase - - - - - - - - - - - - - 3.2.1.55 - - - - - - 3.2.1.55-RXN - - - - - - GO:0046556 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. - GO:0046556 - L-arabinosidase - alpha-L-arabinanase - alpha-L-arabinofuranosidase - alpha-L-arabinofuranoside arabinofuranohydrolase - alpha-L-arabinofuranoside hydrolase - alpha-L-arabinosidase - alpha-N-arabinofuranosidase - alpha-arabinofuranosidase - alpha-arabinosidase - arabinofuranosidase - arabinosidase - polysaccharide alpha-L-arabinofuranosidase - - - - - - - - - - - - - 3.2.1.99 - - - - - - 3.2.1.99-RXN - - - - - - GO:0046558 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the endohydrolysis of 1,5-alpha-arabinofuranosidic linkages in 1,5-arabinans. - 1 5-alpha-L-arabinan 1 5-alpha-L-arabinanohydrolase - GO:0046558 - arabinan endo-1,5-alpha-L-arabinosidase - endo-1 5-a-L-arabinanase - endo-1 5-alpha-L-arabinanase - endo-alpha-1 5-arabanase - endo-arabanase - - - - - - - - - - - - - 4.1.1.2 - - - - - - GO:0046564 - - - - - - OXALATE-DECARBOXYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: oxalate = formate + CO2. - GO:0046564 - oxalate carboxy-lyase - oxalate decarboxylase - - - - - - - - - - - - - FOLSYN-PWY - - - - - - GO:0046654 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin moiety. - GO:0046654 - tetrahydrofolate anabolism - tetrahydrofolate biosynthesis - tetrahydrofolate biosynthetic process - tetrahydrofolate formation - tetrahydrofolate synthesis - - - - - - - - - - - - - - FOLSYN-PWY - - - - - - Folic_acid - - - - - - GO:0046656 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid. - GO:0046656 - folate biosynthesis - folate biosynthetic process - folic acid anabolism - folic acid biosynthesis - folic acid biosynthetic process - folic acid formation - folic acid synthesis - vitamin B9 biosynthesis - vitamin B9 biosynthetic process - vitamin M biosynthesis - vitamin M biosynthetic process - - - - - - - - - - - - GO:0046677 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms. - GO:0046677 - antibiotic susceptibility resistance - response to antibiotic - - - - - - - - - - - - GO:0046685 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides. - GO:0046685 - arsenate sensitivity resistance - response to arsenic - - - - - - - - - - - - GO:0046686 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. - GO:0046686 - cadmium sensitivity resistance - response to cadmium - response to cadmium ion - - - - - - - - - - - - GO:0046688 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. - GO:0046688 - copper sensitivity resistance - response to copper - response to copper ion - - - - - - - - - - - - 168270 "Fusion and Uncoating of the Influenza Virion" - - - - - - 168272 "Binding of the influenza virion to the host cell" - - - - - - GO:0046718 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a virion enters a host cell, including virion attachment and penetration. - GO:0046718 - entry of virus into host cell - viral entry into host cell - - - - - - - - - - - - - 2.6.1.85 - - - - - - GO:0046820 - - - - - - PABASYN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: chorismate + glutamine = 4-amino-4-deoxychorismic acid + glutamate. It is composed of two enzymatic activities (which may be present on one or two polypeptides); the first is a glutaminase which yields ammonia from glutamine, releasing glutamate. The ammonia is used by the second activity which catalyzes the amination of chorismate to form 4-amino-4-deoxychorismate. - 4-amino-4-deoxychorismate synthase - ADC synthase - GO:0046820 - PabB - aminodeoxychorismate synthase - chorismate:L-glutamine amido-ligase - p-aminobenzoate synthetase - para-aminobenzoic acid synthase - - - - - - - - - - - - - - GO:0046835 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. - GO:0046835 - carbohydrate phosphorylation - - - - - - - - - - - - 1.7.1.- - - - - - - GO:0046857 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP. - GO:0046857 - oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor - - - - - - - - - - - - - GO:0046870 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with cadmium (Cd) ions. - GO:0046870 - cadmium binding - cadmium ion binding - copper cadmium binding - - - - - - - - - - - - - GO:0046872 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with any metal ion. - GO:0046872 - heavy metal binding - metal binding - metal ion binding - - - - - - - - - - - - - GO:0046873 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of metal ions from one side of a membrane to the other. - GO:0046873 - heavy metal ion porter - heavy metal ion transporter - heavy metal ion:hydrogen symporter - heavy metal-exporting ATPase - high affinity metal ion uptake transporter - low affinity metal ion uptake transporter - metal ion transmembrane transporter - - - - - - - - - - - - - 2.3.3.- - - - - - - GO:0046912 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. - GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer - - - - - - - - - - - - - GO:0046914 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. - GO:0046914 - transition metal ion binding - - - - - - - - - - - - - 78757 "hydrogen ion transporting ATP synthase activity, rotational mechanism" - - - - - - ATPSYN-RXN - - - - - - GO:0046933 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism. - GO:0046933 - H+-transporting ATP synthase - hydrogen ion translocating F-type ATPase - hydrogen ion transporting ATP synthase activity, rotational mechanism - hydrogen ion transporting two-sector ATPase - - - - - - - - - - - - - ATPSYN-RXN - - - - - - GO:0046961 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. - ATP phosphohydrolase - ATP synthase - ATPase - F0F1-ATPase - F1-ATPase - FoF1-ATPase - GO:0046961 - H+-transporting ATPase - H+-transporting two-sector ATPase - activity - bacterial Ca2+ Mg2+ ATPase - chloroplast ATPase - coupling factors - hydrogen ion translocating A-type ATPase - hydrogen ion translocating F-type ATPase - hydrogen ion translocating V-type ATPase - hydrogen ion transporting ATPase activity rotational mechanism - hydrogen ion transporting two-sector ATPase - mitochondrial ATPase - proton-transporting ATPase activity, rotational mechanism - - - - - - - - - - - - - GO:0046983 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. - GO:0046983 - protein dimerization - - - - - - - - - - - - - 1.1.1.127 - - - - - - 1.1.1.127-RXN - - - - - - GO:0047001 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NAD+ + 2-dehydro-3-deoxy-D-gluconate = NADH + (4S)-4,6-dihydroxy-2,5-dioxohexanoate. - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase - 2-dehydro-3-deoxy-D-gluconate:NAD+ 5-oxidoreductase - 2-keto-3-deoxy-D-gluconate dehydrogenase - 2-keto-3-deoxygluconate 5-dehydrogenase - 2-keto-3-deoxygluconate dehydrogenase - GO:0047001 - - - - - - - - - - - - - 2.1.1.74 - - - - - - 2.1.1.74-RXN - - - - - - GO:0047151 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: FADH + H+ + tRNA U(psi)C = FAD+ + tRNA T(psi)C + THF. - 5 10-methylenetetrahydrofolate:tRNA - 5 10-methylenetetrahydrofolate:tRNA-UPsiC - GO:0047151 - activity - folate-dependent ribothymidyl synthase - methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) - methylenetetrahydrofolate-transfer ribonucleate uracil 5-methyltransferase - - - - - - - - - - - - - 2.3.1.89 - - - - - - 2.3.1.89-RXN - - - - - - GO:0047200 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-2,3,4,5-tetrahydrodipicolinate + acetyl-CoA = L-2-acetamido-6-oxoheptanedioate + CoA. - 3 4 5-tetrahydrodipicolinate-2 6-dicarboxylate N2-acetyltransferase - 3 4 5-tetrahydropyridine-2 6-dicarboxylate 2-N-acetyltransferase - GO:0047200 - acetyl-CoA:L-2 3 4 5-tetrahydrodipicolinate N2-acetyltransferase - tetrahydrodipicolinate N-acetyltransferase - tetrahydrodipicolinate acetylase - tetrahydrodipicolinate:acetyl-CoA acetyltransferase - - - - - - - - - - - - - 2.4.1.187 - - - - - - GO:0047244 - - - - - - TEICHOICSYN2-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP-N-acetyl-D-mannosamine = N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenol + UDP. - GO:0047244 - N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase - N-acetylmannosaminyltransferase - UDP-N-acetyl-D-mannosamine:N-acetyl-beta-D-glucosaminyldiphosphoundecaprenol beta-1 4-N-acetylmannosaminyltransferase - UDP-N-acetylmannosamine:N-acetylglucosaminyl diphosphorylundecaprenol N-acetylmannosaminyltransferase - uridine diphosphoacetyl-mannosamineacetylglucosaminylpyrophosphorylundecaprenol acetylmannosaminyltransferase - - - - - - - - - - - - - 2.4.1.52 - - - - - - 2.4.1.52-RXN - - - - - - GO:0047265 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: poly(glycerol phosphate) + UDP-D-glucose = alpha-D-glucosylpoly(glycerol phosphate) + UDP. - GO:0047265 - UDP alpha-glucosyltransferase - alpha-D-glucosyltransferase - poly(glycerol-phosphate) alpha-glucosyltransferase - uridine alpha-glucosyltransferase - - - - - - - - - - - - - 2.6.1.22 - - - - - - 2.6.1.22-RXN - - - - - - GO:0047298 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-oxoglutarate + (S)-3-amino-2-methylpropanoate = L-glutamate + methylmalonate-semialdehyde. - (S)-3-amino-2-methylpropionate transaminase - GO:0047298 - L-3-aminoisobutyrate aminotransferase - L-3-aminoisobutyrate transaminase - L-3-aminoisobutyric aminotransferase - L-AIBAT - aminotransferase - beta-aminobutyric transaminase - beta-aminoisobutyrate-alpha-ketoglutarate transaminase - - - - - - - - - - - - 2.7.7.33 - - - - - - 2.7.7.33-RXN - - - - - - GO:0047343 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glucose-1-phosphate + CTP = CDP-D-glucose + diphosphate. - CDP glucose pyrophosphorylase - CDP-glucose diphosphorylase - CDP-glucose pyrophosphorylase - CTP:D-glucose-1-phosphate cytidylyltransferase - CTP:alpha-D-glucose-1-phosphate cytidylyltransferase - CTP:glucose-1-phosphate cytidylyltransferase - GO:0047343 - cytidine diphosphate glucose pyrophosphorylase - cytidine diphosphate-D-glucose pyrophosphorylase - cytidine diphosphoglucose pyrophosphorylase - glucose-1-phosphate cytidylyltransferase - - - - - - - - - - - - 2.7.7.39 - - - - - - 2.7.7.39-RXN - - - - - - GO:0047348 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glycerol-3-phosphate + CTP = CDPglycerol + diphosphate. - CDP-glycerol diphosphorylase - CDP-glycerol pyrophosphorylase - CTP:glycerol 3-phosphate cytidylyltransferase - CTP:glycerol-3-phosphate cytidylyltransferase - CTP:sn-glycerol-3-phosphate cytidylyltransferase - GO:0047348 - Gro-PCT - cytidine diphosphate glycerol pyrophosphorylase - cytidine diphosphoglycerol pyrophosphorylase - glycerol-3-phosphate cytidylyltransferase - - - - - - - - - - - - 2.7.7.40 - - - - - - 2.7.7.40-RXN - - - - - - GO:0047349 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribitol 5-phosphate + CTP = CDP-ribitol + diphosphate. - CDP ribitol pyrophosphorylase - CDP-ribitol diphosphorylase - CDP-ribitol pyrophosphorylase - CTP:D-ribitol-5-phosphate cytidylyltransferase - D-ribitol-5-phosphate cytidylyltransferase - GO:0047349 - cytidine diphosphate ribitol pyrophosphorylase - cytidine diphosphoribitol pyrophosphorylase - ribitol 5-phosphate cytidylyltransferase - - - - - - - - - - - - - 2.7.8.12 - - - - - - 2.7.8.12-RXN - - - - - - GO:0047355 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: glycerophosphate(n) + CDP-glycerol = glycerophosphate(n+1) + CMP.; - CDP-glycerol glycerophosphotransferase - CDPglycerol glycerophosphotransferase - CGPTase - GO:0047355 - cytidine diphosphoglycerol glycerophosphotransferase - glycerophosphate synthetase - glycerophosphotransferase - polymerase - teichoic acid glycerol transferase - teichoic-acid synthase - - - - - - - - - - - - - 2.7.8.14 - - - - - - 2.7.8.14-RXN - - - - - - GO:0047356 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ribitol phosphate(n) + CDP-ribitol = ribitol phosphate(n+1) + CMP.; - CDP-ribitol ribitolphosphotransferase - CDPribitol ribitolphosphotransferase - GO:0047356 - polyribitol phosphate polymerase - polyribitol phosphate synthetase - ribitolphosphotransferase - synthetase - teichoate synthase - teichoate synthetase - teichoic-acid synthase - - - - - - - - - - - - - 2.8.3.9 - - - - - - 2.8.3.9-RXN - - - - - - GO:0047371 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: acetoacetate + butyryl-CoA = acetoacetyl-CoA + butyrate. - GO:0047371 - butanoyl-CoA:acetoacetate CoA-transferase - butyrate-acetoacetate CoA-transferase - butyryl coenzyme A-acetoacetate coenzyme A-transferase - butyryl-CoA-acetoacetate CoA-transferase - - - - - - - - - - - - - 4.1.2.29 - - - - - - 4.1.2.29-RXN - - - - - - GO:0047441 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-dehydro-2-deoxy-D-gluconate 6-phosphate = malonate semialdehyde + dihydroxy-acetone-phosphate.; - 5-dehydro-2-deoxy-D-gluconate-6-phosphate malonate-semialdehyde-lyase - 5-dehydro-2-deoxyphosphogluconate aldolase - GO:0047441 - phospho-5-dehydro-2-deoxygluconate aldolase - phospho-5-keto-2-deoxygluconate aldolase - - - - - - - - - - - - - 4.2.1.41 - - - - - - 4.2.1.41-RXN - - - - - - GO:0047448 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 5-keto-4-deoxy-D-glucarate = CO2 + H2O + 2,5-dioxopentanoate. - 5-dehydro-4-deoxy-D-glucarate hydro-lyase - 5-dehydro-4-deoxyglucarate dehydratase - 5-keto-4-deoxy-glucarate dehydratase - D-4-deoxy-5-ketoglucarate hydro-lyase - GO:0047448 - deoxyketoglucarate dehydratase - - - - - - - - - - - - - 6.1.1.13 - - - - - - 6.1.1.13-RXN - - - - - - GO:0047473 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: poly(ribitol phosphate) + D-alanine + ATP = O-D-alanyl-poly(ribitol phosphate) + pyrophosphate + AMP. - D-alanine-D-alanyl carrier protein ligase - D-alanine-activating enzyme - D-alanine-membrane acceptor ligase - D-alanine-poly(phosphoribitol) ligase - D-alanine: membrane acceptor ligase - GO:0047473 - ligase - synthetase - - - - - - - - - - - - - 6.3.2.10 - - - - - - 6.3.2.10-RXN - - - - - - GO:0047480 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine + ATP + D-alanyl-D-alanine = phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + ADP. - GO:0047480 - MurF synthetase - UDP-MurNAc-L-Ala-D-Glu-L-Lys:D-Ala-D-Ala ligase - UDP-MurNAc-pentapeptide synthetase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine:D-alanyl-D-alanine ligase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine synthetase - UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 6-diaminopimeloyl-D-alanyl-D-alanine synthetase - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase - UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase - UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase - UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase - UDP-N-acetylmuramoylalanyl-D-glutamyl-lysine-D-alanyl-D-alanine ligase - UDP-N-acetylmuramoylalanyl-tripeptide-D-alanyl-D-alanine ligase - UDPacetylmuramoylpentapeptide synthetase - uridine diphosphoacetylmuramoylpentapeptide synthetase - - - - - - - - - - - - 4.2.2.10 - - - - - - 4.2.2.10-RXN - - - - - - GO:0047490 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the eliminative cleavage of (14)-a-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-a-D-galact-4-enuronosyl groups at their nonreducing ends. - GO:0047490 - PL - PMGL - PNL - endo-pectin lyase - lyase - pectin lyase - pectin methyltranseliminase - pectin trans-eliminase - pectolyase - polymethylgalacturonic transeliminase - - - - - - - - - - - - - 2-METHYLCITRATE-DEHYDRATASE-RXN - - - - - - 4.2.1.79 - - - - - - GO:0047547 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-hydroxybutane-1,2,3-tricarboxylate = (Z)-but-2-ene-1,2,3-tricarboxylate + H2O. - 2 3-tricarboxylate hydro-lyase 2 3-tricarboxylate-forming] - 2-hydroxybutane-1 2 3-tricarboxylate hydro-lyase - 2-methylcitrate dehydratase - 2-methylcitrate hydro-lyase - GO:0047547 - prpD - - - - - - - - - - - - - - 2.7.1.92 - - - - - - 5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN - - - - - - GO:0047590 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 5-dehydro-2-deoxy-D-gluconate = ADP + 6-phospho-5-dehydro-2-deoxy-D-gluconate. - 5-dehydro-2-deoxygluconokinase - 5-keto-2-deoxyglucono kinase - 5-keto-2-deoxygluconokinase - ATP:5-dehydro-2-deoxy-D-gluconate 6-phosphotransferase - DKH kinase - GO:0047590 - - - - - - - - - - - - - 4.1.1.5 - - - - - - ACETOLACTATE-DECARBOXYLASE-RXN - - - - - - GO:0047605 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2. - GO:0047605 - acetolactate decarboxylase - alpha-acetolactate decarboxylase - carboxy-lyase - - - - - - - - - - - - 3.6.1.13 - - - - - - GO:0047631 - - - - - - RXN0-1441 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ADP-ribose + H2O = AMP + D-ribose 5-phosphate. - ADP-ribose diphosphatase - ADP-ribose phosphohydrolase - ADP-ribose pyrophosphatase - ADP-ribose ribophosphohydrolase - ADPR-PPase - ADPribose diphosphatase - ADPribose pyrophosphatase - GO:0047631 - adenosine diphosphoribose pyrophosphatase - - - - - - - - - - - - - 3.1.1.41 - - - - - - CEPHALOSPORIN-C-DEACETYLASE-RXN - - - - - - GO:0047739 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: cephalosporin C + H2O = deacetylcephalosporin C + acetate. - GO:0047739 - cephalosporin C acetyl-esterase - cephalosporin C acetyl-hydrolase - cephalosporin C acetylase - cephalosporin C acetylesterase - cephalosporin C deacetylase - cephalosporin acetylesterase - cephalosporin-C acetylhydrolase - cephalosporin-C deacetylase - - - - - - - - - - - - - - 2.7.2.7 - - - - - - BUTYRATE-KINASE-RXN - - - - - - GO:0047761 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + butanoate = ADP + butanoyl phosphate.; - ATP:butanoate 1-phosphotransferase - GO:0047761 - butyrate kinase - - - - - - - - - - - - - 3.2.1.54 - - - - - - CYCLOMALTODEXTRINASE-RXN - - - - - - GO:0047798 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: H2O + cyclomaltodextrin = linear maltodextrin. - GO:0047798 - cyclodextrinase - cycloheptaglucanase - cyclohexaglucanase - cyclomaltodextrin dextrin-hydrolase - cyclomaltodextrinase - - - - - - - - - - - - - 2.6.1.21 - - - - - - D-ALANINE-AMINOTRANSFERASE-RXN - - - - - - GO:0047810 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-alanine + 2-oxoglutarate = pyruvate + D-glutamate. - D-alanine aminotransferase - D-alanine transaminase - D-alanine-D-glutamate transaminase - D-alanine:2-oxoglutarate aminotransferase - D-amino acid aminotransferase - D-amino acid transaminase - D-amino-acid transaminase - D-aspartate aminotransferase - D-aspartate transaminase - D-aspartic aminotransferase - GO:0047810 - - - - - - - - - - - - - 1.1.1.47 - - - - - - GLUCOSE-1-DEHYDROGENASE-RXN - - - - - - GO:0047936 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H. - 1-oxidoreductase - D-glucose dehydrogenase - GO:0047936 - glucose 1-dehydrogenase - hexose phosphate dehydrogenase - - - - - - - - - - - - - 1.1.1.94 - - - - - - GLYC3PDEHYDROGBIOSYN-RXN - - - - - - GO:0047952 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sn-glycerol 3-phosphate + NAD(P)+ = glycerone phosphate + NAD(P)H + H+. - 2-oxidoreductase - GO:0047952 - glycerol 3-phosphate dehydrogenase - glycerol phosphate dehydrogenase - glycerol-3-phosphate dehydrogenase - glycerol-3-phosphate dehydrogenase [NAD(P)+] - oxidoreductase - - - - - - - - - - - - 4.4.1.2 - - - - - - GO:0047982 - - - - - - HOMOCYSTEINE-DESULFHYDRASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-homocysteine + H2O = sulfide + NH3 + 2-oxobutanoate. - GO:0047982 - L-homocysteine hydrogen-sulfide-lyase - homocysteine desulfhydrase - homocysteine desulfurase - - - - - - - - - - - - - GO:0048034 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle. - GO:0048034 - haem O biosynthesis - haem O biosynthetic process - heme O anabolism - heme O biosynthesis - heme O biosynthetic process - heme O formation - heme O synthesis - - - - - - - - - - - - - GO:0048037 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. - GO:0048037 - cofactor binding - - - - - - - - - - - - - GO:0048038 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds. - GO:0048038 - quinone binding - - - - - - - - - - - - - Apoplast - - - - - - GO:0048046 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The protoplasts of cells in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. - GO:0048046 - apoplast - - - - - - - - - - - - - GO:0048500 - - - - - - Signal_recognition_particle - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A complex of protein and RNA which facilitates translocation of proteins across membranes. - GO:0048500 - signal recognition particle - - - - - - - - - - - - - 1.4.1.9 - - - - - - GO:0050049 - - - - - - LEUCINE-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-leucine + H2O + NAD+ = 4-methyl-2-oxopentanoate + NH3 + NADH. - GO:0050049 - L-leucine dehydrogenase - L-leucine:NAD+ oxidoreductase - L-leucine:NAD+ oxidoreductase deaminating - LeuDH - leucine dehydrogenase - - - - - - - - - - - - - 2.4.1.10 - - - - - - GO:0050053 - - - - - - LEVANSUCRASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sucrose + 2,6-beta-D-fructosyl(n) = glucose + 2,6-beta-D-fructosyl(n+1).; - GO:0050053 - beta-2 6-fructan:D-glucose 1-fructosyltransferase - beta-2 6-fructosyltransferase - levansucrase - sucrose 6-fructosyl transferase - sucrose 6-fructosyltransferase - sucrose:2 6-beta-D-fructan 6-beta-D-fructosyltransferase - - - - - - - - - - - - 5.4.3.2 - - - - - - GO:0050066 - - - - - - LYSINE-23-AMINOMUTASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-lysine = (3S)-3,6-diaminohexanoate. - GO:0050066 - L-lysine 2 3-aminomutase - lysine 2,3-aminomutase - - - - - - - - - - - - - 3.2.1.122 - - - - - - GO:0050081 - - - - - - MALTOSE-6-PHOSPHATE-GLUCOSIDASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: H2O + maltose 6'-phosphate = D-glucose + D-glucose 6-phosphate. - GO:0050081 - maltose-6'-phosphate 6-phosphoglucohydrolase - maltose-6'-phosphate glucosidase - phospho-alpha-glucosidase - - - - - - - - - - - - 1.1.1.18 - - - - - - GO:0050112 - - - - - - MYO-INOSITOL-2-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: myo-inositol + NAD+ = 2,4,6/3,5-pentahydroxycyclohexanone + NADH. - GO:0050112 - inositol 2-dehydrogenase - myo-inositol 2-dehydrogenase - - - - - - - - - - - - - 4.2.1.44 - - - - - - GO:0050114 - - - - - - MYO-INOSOSE-2-DEHYDRATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2,4,6/3,5-pentahydroxycyclohexanone = 3,5/4-trihydroxycyclohexa-1,2-dione + H2O. - 2 4 6 3 5-pentahydroxycyclohexanone hydro-lyase - GO:0050114 - inosose 2 3-dehydratase - ketoinositol dehydratase - myo-inosose-2 dehydratase - - - - - - - - - - - - - 3.5.1.47 - - - - - - GO:0050118 - - - - - - N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-acetyl-LL2,6-diaminoheptanedioate + H2O = acetate + LL2,6-diaminoheptanedioate.; - 6-N-acetyl-LL-2 6-diaminoheptanedioate amidohydrolase - GO:0050118 - N-acetyl-L-diaminopimelic acid deacylase - N-acetyl-LL-diaminopimelate deacylase - N-acetyldiaminopimelate deacetylase - N6-acetyl-LL-2 6-diaminoheptanedioate amidohydrolase - - - - - - - - - - - - - 1.6.99.5 - - - - - - GO:0050136 - - - - - - NADH-DEHYDROGENASE-QUINONE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol. - D-diaphorase - DPNH-menadione reductase - GO:0050136 - NADH dehydrogenase (quinone) - NADH-quinone oxidoreductase - oxidoreductase - reduced nicotinamide adenine dinucleotide dehydrogenase - - - - - - - - - - - - - 2.3.1.19 - - - - - - GO:0050182 - - - - - - PHOSPHATE-BUTYRYLTRANSFERASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: butanoyl-CoA + phosphate = CoA + butanoylphosphate.; - GO:0050182 - butanoyl-CoA:phosphate butanoyltransferase - phosphate butyryltransferase - phosphotransbutyrylase - - - - - - - - - - - - - 1.1.1.137 - - - - - - GO:0050256 - - - - - - RIBITOL-5-PHOSPHATE-2-DEHYDROGENASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: D-ribitol 5-phosphate + NAD(P)+ = D-ribulose 5-phosphate + NAD(P)H + H+. - 2-oxidoreductase - GO:0050256 - dehydrogenase ribitol 5-phosphate - ribitol-5-phosphate 2-dehydrogenase - - - - - - - - - - - - - 4.1.1.73 - - - - - - GO:0050319 - - - - - - TARTRATE-DECARBOXYLASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (R,R)-tartrate = D-glycerate + CO2. - GO:0050319 - carboxy-lyase - tartrate decarboxylase - - - - - - - - - - - - - 3.5.99.2 - - - - - - GO:0050334 - - - - - - THIAMINASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: thiamin + H2O = 4-amino-5-hydroxymethyl-2-methylpyrimidine + 5-(2-hydroxyethyl)-4-methylthiazole. - GO:0050334 - thiaminase - thiaminase II - - - - - - - - - - - - - 3.6.1.27 - - - - - - GO:0050380 - - - - - - UNDECAPRENYL-DIPHOSPHATASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: undecaprenyl diphosphate + H2O = undecaprenyl phosphate + phosphate. - C55-isoprenyl diphosphatase - C55-isoprenyl pyrophosphatase - GO:0050380 - diphosphatase - isoprenyl pyrophosphatase - pyrophosphatase - undecaprenyl-diphosphatase - undecaprenyl-diphosphate phosphohydrolase - - - - - - - - - - - - - 3.5.3.8 - - - - - - FORMIMINOGLUTAMASE-RXN - - - - - - GO:0050415 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide. - GO:0050415 - N-formimidoyl-L-glutamate formimidoylhydrolase - N-formimino-L-glutamate formiminohydrolase - N-formiminoglutamate hydrolase - formimidoylglutamase - formiminoglutamase - formiminoglutamate hydrolase - - - - - - - - - - - - - 2-METHYLCITRATE-SYNTHASE-RXN - - - - - - 2.3.3.5 - - - - - - GO:0050440 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: propanoyl-CoA + H2O + oxaloacetate = (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate + CoA. - 2-methylcitrate oxaloacetate-lyase - 2-methylcitrate synthase - GO:0050440 - MCS - methylcitrate synthase - methylcitrate synthetase - propanoyl-CoA:oxaloacetate C-propanoyltransferase - - - - - - - - - - - - - 3.5.2.7 - - - - - - GO:0050480 - - - - - - IMIDAZOLONEPROPIONASE-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate + H2O = H+ + N-formimidoyl-L-glutamate. - GO:0050480 - acid hydrolase - amidohydrolase - imidazolone propionic acid hydrolase - imidazolone-5-propionate hydrolase - imidazolonepropionase - - - - - - - - - - - - - 1.1.1.261 - - - - - - 1.1.1.261-RXN - - - - - - GO:0050492 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: NAD(P)+ + sn-glycerol-1-phosphate = NAD(P)H + H+ + dihydroxy-acetone-phosphate. - 2-oxidoreductase - GO:0050492 - glycerol-1-phosphate dehydrogenase [NAD(P)+] - - - - - - - - - - - - 2.4.1.227 - - - - - - GO:0050511 - - - - - - NACGLCTRANS-RXN - - - - - - RXN-8976 - - - - - - RXN-9672 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP. - GO:0050511 - MurG transferase - beta-1 4-N-acetylglucosaminlytransferase - pyrophosphoryl-undecaprenol N-acetylglucosamine transferase - undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase - undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase - - - - - - - - - - - - - - 2.7.1.148 - - - - - - 2.7.1.148-RXN - - - - - - GO:0008698 - - - - - - GO:0050515 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: ATP + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol = ADP + 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. - 2-phosphotransferase - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase - CDP-ME kinase - CMK - GO:0050515 - - - - - - - - - - - - 2.7.7.60 - - - - - - 2.7.7.60-RXN - - - - - - GO:0008699 - - - - - - GO:0050518 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: CTP + 2-C-methyl-D-erythritol 4-phosphate = diphosphate + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase - CTP:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - GO:0050518 - MCT - MEP cytidylyltransferase - - - - - - - - - - - - - 3.1.3.71 - - - - - - GO:0050532 - - - - - - R229-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2-phospho-3-sulfolactate + H2O = 3-sulfolactate + phosphate. - 2-phosphosulfolactate phosphatase - 2-phosphosulpholactate phosphatase - ComB phosphatase - GO:0050532 - phosphohydrolase - - - - - - - - - - - - - 6.3.5.- - - - - - - 6.3.5.7 - - - - - - 6.3.5.7-RXN - - - - - - GO:0008264 - - - - - - GO:0017068 - - - - - - GO:0050567 - - - - - - Glutaminyl-tRNA_synthase_(glutamine-hydrolysing) - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP. - GO:0050567 - Glu-AdT - Glu-tRNAGln amidotransferase - Glu-tRNAGln:L-glutamine amido-ligase - amidotransferase - glutaminyl-tRNA synthase - glutaminyl-tRNA synthase (glutamine-hydrolyzing) - glutamyl-tRNAGln amidotransferase - glutamyl-tRNAGln:L-glutamine amido-ligase - - - - - - - - - - - - - 3.5.1.44 - - - - - - CHEBDEAMID-RXN - - - - - - GO:0050568 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: protein L-glutamine + H2O = protein L-glutamate + NH3. - GO:0050568 - destabilase - glutaminyl-peptide glutaminase - glutaminylpeptide glutaminase - peptidoglutaminase II - peptidylglutaminase II - protein-L-glutamine amidohydrolase - protein-glutamine glutaminase - - - - - - - - - - - - - GO:0050660 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. - FAD binding - GO:0050660 - flavin adenine dinucleotide binding - flavine-adenine dinucleotide binding - - - - - - - - - - - - - - GO:0050661 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP, or the reduced form, NADPH. - GO:0050661 - NADP or NADPH binding - nicotinamide adenine dinucleotide phosphate binding - - - - - - - - - - - - - GO:0050662 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. - GO:0050662 - coenzyme binding - - - - - - - - - - - - GO:0050789 - - - - - - GO:0050791 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. - GO:0050789 - regulation of biological process - regulation of physiological process - - - - - - - - - - - - - GO:0050830 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism. - GO:0050830 - Gram-positive antibacterial peptide - defence response to Gram-positive bacteria - defence response to Gram-positive bacterium - defense response to Gram-positive bacteria - defense response to Gram-positive bacterium - - - - - - - - - - - - GO:0050896 - - - - - - GO:0051869 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. - GO:0050896 - physiological response to stimulus - response to stimulus - - - - - - - - - - - - - GO:0050897 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a cobalt (Co) ion. - GO:0050897 - cobalt binding - cobalt ion binding - - - - - - - - - - - - GO:0050906 - - - - - - Transduction_(physiology) - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The series of events involved in sensory perception in which a sensory stimulus is received by a cell and converted into a molecular signal. - GO:0050906 - detection of stimulus involved in sensory perception - sensory detection of stimulus - sensory perception sensory transduction of stimulus - sensory perception stimulus detection - sensory transduction - - - - - - - - - - - - - 5.4.99.17 - - - - - - 5.4.99.17-RXN - - - - - - GO:0051007 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: squalene = hop-22(29)-ene. - GO:0051007 - squalene mutase - squalene-hopene cyclase - squalene:hopene cyclase - - - - - - - - - - - - - 3.2.1.41 - - - - - - GO:0051060 - - - - - - RXN-1824 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of (1,6)-a-D-glucosidic linkages in pullulan [a linear polymer of a-(1,6)-linked maltotriose units] and in amylopectin and glycogen, and the a- and b-limit dextrins of amylopectin and glycogen. - GO:0051060 - R-enzyme - alpha-dextrin endo-1 6-alpha-glucosidase - amylopectin 6-glucanohydrolase - bacterial debranching enzyme - debranching enzyme - limit dextrinase - pullulan 6-glucanohydrolase - pullulan alpha-1 6-glucanohydrolase - pullulanase - - - - - - - - - - - - - GO:0051082 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an unfolded protein. - GO:0051082 - binding unfolded ER proteins - chaperone - fimbrium-specific chaperone - glycoprotein-specific chaperone - histone-specific chaperone - ribosomal chaperone - tubulin-specific chaperone - unfolded protein binding - - - - - - - - - - - - - GO:0051087 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. - GO:0051087 - chaperone binding - chaperone protein binding - co-chaperone - co-chaperonin - - - - - - - - - - - - GO:0051205 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process by which a protein is incorporated into a biological membrane. - GO:0051205 - integral membrane protein localization - integral membrane protein positioning - membrane protein localization - membrane protein positioning - protein insertion into membrane - protein-membrane insertion - - - - - - - - - - - - - GO:0051213 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the incorporation of both atoms of oxygen from one molecule of O2 into the (reduced) substrate. - GO:0051213 - dioxygenase - - - - - - - - - - - - GO:0051258 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. - GO:0051258 - protein polymer biosynthesis - protein polymer biosynthetic process - protein polymer formation - protein polymerization - - - - - - - - - - - - - 4.99.1.4 - - - - - - GO:0051266 - - - - - - SIROHEME-FERROCHELAT-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: sirohydrochlorin + Fe2+ = siroheme + 2 H+. - CysG - GO:0051266 - Met8P - SirB - siroheme ferro-lyase - siroheme synthase - sirohydrochlorin ferro-lyase - sirohydrochlorin ferrochelatase - - - - - - - - - - - - GO:0007001 - - - - - - GO:0051276 - - - - - - GO:0051277 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. - GO:0051276 - chromosome organisation - chromosome organization - chromosome organization and biogenesis - maintenance of genome integrity - nuclear genome maintenance - - - - - - - - - - - - - - GO:0051287 - - - - - - GO:0051288 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD, or the reduced form, NADH. - GO:0051287 - NAD or NADH binding - nicotinamide adenine dinucleotide binding - - - - - - - - - - - - - Cell_division - - - - - - GO:0051301 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process resulting in the physical partitioning and separation of a cell into daughter cells. - GO:0051301 - cell division - - - - - - - - - - - - GO:0051536 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. - Fe S binding - GO:0051536 - iron sulfur cluster binding - iron sulphur cluster binding - iron-sulfur cluster binding - iron-sulphur cluster binding - - - - - - - - - - - - - GO:0051537 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. - 2 Fe 2 S cluster binding - 2 iron 2 sulphur cluster binding - 2 iron, 2 sulfur cluster binding - 2Fe-2S cluster binding - GO:0051537 - diiron disulfide cluster binding - diiron disulphide cluster binding - iron-sulfur cluster 2Fe-2S binding - iron-sulphur cluster 2Fe-2S binding - - - - - - - - - - - - - GO:0051538 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. - 3 Fe 4 S cluster binding - 3 iron 4 sulphur cluster binding - 3 iron, 4 sulfur cluster binding - 3Fe-4S cluster binding - GO:0051538 - iron-sulfur cluster 3Fe-4S binding - iron-sulphur cluster 3Fe-4S binding - triiron tetrasulfide cluster binding - triiron tetrasulphide cluster binding - - - - - - - - - - - - - GO:0051539 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. - 4 Fe 4 S cluster binding - 4 iron 4 sulphur cluster binding - 4 iron, 4 sulfur cluster binding - 4Fe-4S cluster binding - GO:0051539 - iron-sulfur cluster 4Fe-4S binding - iron-sulphur cluster 4Fe-4S binding - tetrairon tetrasulfide cluster binding - tetrairon tetrasulphide cluster binding - - - - - - - - - - - - - GO:0051603 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. - GO:0051603 - peptidolysis during cellular protein catabolic process - peptidolysis during cellular protein catabolism - peptidolysis involved in cellular protein catabolic process - peptidolysis involved in cellular protein catabolism - proteolysis during cellular protein catabolic process - proteolysis during cellular protein catabolism - proteolysis involved in cellular protein catabolic process - - - - - - - - - - - - - 3.2.1.80 - - - - - - 3.2.1.80-RXN - - - - - - GO:0051669 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of terminal, non-reducing 2,1- and 2,6-linked beta-D-fructofuranose residues in fructans.; - GO:0051669 - beta-D-fructan fructohydrolase - exo-beta-D-fructosidase - exo-beta-fructosidase - fructan b-fructosidase - fructan beta-fructosidase - fructan exohydrolase - fructanase - polysaccharide beta-fructofuranosidase - - - - - - - - - - - - 156678 "Activation of Cdc25C" - - - - - - 156699 "Inactivation of Wee1 kinase" - - - - - - 156711 "Polo-like kinase mediated events" - - - - - - 162657 "Inactivation of Myt1 kinase" - - - - - - 429000 "Activation of Cdc25C" - - - - - - 440597 "Inactivation of Myt1 kinase" - - - - - - 440632 "Inactivation of Wee1 kinase" - - - - - - 448691 "Polo-like kinase mediated events" - - - - - - 451327 "Activation of Cdc25C" - - - - - - 462379 "Inactivation of Myt1 kinase" - - - - - - 462418 "Inactivation of Wee1 kinase" - - - - - - 469816 "Polo-like kinase mediated events" - - - - - - 481114 "Inactivation of Myt1 kinase" - - - - - - 481147 "Inactivation of Wee1 kinase" - - - - - - 487948 "Polo-like kinase mediated events" - - - - - - 501179 "Inactivation of Myt1 kinase" - - - - - - 501212 "Inactivation of Wee1 kinase" - - - - - - 507919 "Polo-like kinase mediated events" - - - - - - 514352 "Inactivation of Myt1 kinase" - - - - - - 514372 "Inactivation of Wee1 kinase" - - - - - - 517799 "Polo-like kinase mediated events" - - - - - - 523399 "Inactivation of Myt1 kinase" - - - - - - 523416 "Inactivation of Wee1 kinase" - - - - - - 526632 "Polo-like kinase mediated events" - - - - - - 529710 "Inactivation of Myt1 kinase" - - - - - - 529716 "Inactivation of Wee1 kinase" - - - - - - 531433 "Polo-like kinase mediated events" - - - - - - 534968 "Inactivation of Myt1 kinase" - - - - - - 534973 "Inactivation of Wee1 kinase" - - - - - - 536805 "Polo-like kinase mediated events" - - - - - - 540566 "Inactivation of Myt1 kinase" - - - - - - 540581 "Inactivation of Wee1 kinase" - - - - - - 542564 "Polo-like kinase mediated events" - - - - - - 546191 "Inactivation of Myt1 kinase" - - - - - - 546209 "Inactivation of Wee1 kinase" - - - - - - 547884 "Polo-like kinase mediated events" - - - - - - 550927 "Inactivation of Myt1 kinase" - - - - - - 550949 "Inactivation of Wee1 kinase" - - - - - - 552461 "Polo-like kinase mediated events" - - - - - - 556130 "Inactivation of Myt1 kinase" - - - - - - 556150 "Inactivation of Wee1 kinase" - - - - - - 558068 "Polo-like kinase mediated events" - - - - - - 590491 "Inactivation of Myt1 kinase" - - - - - - 590501 "Inactivation of Wee1 kinase" - - - - - - 592813 "Polo-like kinase mediated events" - - - - - - GO:0000074 - - - - - - GO:0051726 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the rate or extent of progression through the cell cycle. - GO:0051726 - cell cycle control - cell cycle modulation - cell cycle regulation - cell cycle regulator - control of cell cycle progression - modulation of cell cycle progression - regulation of cell cycle - regulation of cell cycle progression - regulation of progression through cell cycle - tumor suppressor - - - - - - - - - - - - 1.17.1.2 - - - - - - GO:0051745 - - - - - - ISPH2-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - GO:0051745 - oxidoreductase - - - - - - - - - - - - GO:0006980 - - - - - - GO:0051775 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. - GO:0051775 - redox signal response - response to redox state - - - - - - - - - - - - GO:0051782 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that stops, prevents or reduces the frequency, rate or extent of cell division. - GO:0051782 - down regulation of cell division - down-regulation of cell division - downregulation of cell division - inhibition of cell division - negative regulation of cell division - - - - - - - - - - - - 1.11.1.15 - - - - - - 1.11.1.15-RXN - - - - - - GO:0051920 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH.; - AhpC - GO:0051920 - PRDX - Prx - alkyl hydroperoxide reductase C22 - peroxiredoxin - thiol-containing-reductant:hydroperoxide oxidoreductase - - - - - - - - - - - - - 1.3.99.22 - - - - - - GO:0051989 - - - - - - HEMN-RXN - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: coproporphyrinogen III + 2 S-adenosyl-L-methionine = protoporphyrinogen IX + 2 CO2 + 2 L-methionine + 2 5'-deoxyadenosine. - GO:0051989 - HemN - coproporphyrinogen III oxidase - coproporphyrinogen dehydrogenase - coproporphyrinogen-III:S-adenosyl-L-methionine oxidoreductase - oxygen-independent coproporphyrinogen-III oxidase - radical SAM enzyme - - - - - - - - - - - - - - 382551 "Transmembrane transport of small molecules" - - - - - - 382556 "ABC-family proteins mediated transport" - - - - - - 448617 "ABC-family proteins mediated transport" - - - - - - 448618 "Transmembrane transport of small molecules" - - - - - - 469743 "ABC-family proteins mediated transport" - - - - - - 469744 "Transmembrane transport of small molecules" - - - - - - 487452 "ABC-family proteins mediated transport" - - - - - - 487453 "Transmembrane transport of small molecules" - - - - - - 507409 "ABC-family proteins mediated transport" - - - - - - 507410 "Transmembrane transport of small molecules" - - - - - - 517410 "ABC-family proteins mediated transport" - - - - - - 517411 "Transmembrane transport of small molecules" - - - - - - 526284 "ABC-family proteins mediated transport" - - - - - - 526285 "Transmembrane transport of small molecules" - - - - - - 531148 "ABC-family proteins mediated transport" - - - - - - 531149 "Transmembrane transport of small molecules" - - - - - - 536519 "ABC-family proteins mediated transport" - - - - - - 536520 "Transmembrane transport of small molecules" - - - - - - 542237 "ABC-family proteins mediated transport" - - - - - - 542238 "Transmembrane transport of small molecules" - - - - - - 547954 "Transmembrane transport of small molecules" - - - - - - 552197 "ABC-family proteins mediated transport" - - - - - - 552198 "Transmembrane transport of small molecules" - - - - - - 557783 "ABC-family proteins mediated transport" - - - - - - 557784 "Transmembrane transport of small molecules" - - - - - - 568396 "ABC-family proteins mediated transport" - - - - - - 568397 "Transmembrane transport of small molecules" - - - - - - 581598 "ABC-family proteins mediated transport" - - - - - - 581599 "Transmembrane transport of small molecules" - - - - - - 585791 "ABC-family proteins mediated transport" - - - - - - 585792 "Transmembrane transport of small molecules" - - - - - - 592494 "ABC-family proteins mediated transport" - - - - - - 592495 "Transmembrane transport of small molecules" - - - - - - 597317 "ABC-family proteins mediated transport" - - - - - - 597318 "Transmembrane transport of small molecules" - - - - - - 598116 "ABC-family proteins mediated transport" - - - - - - 598117 "Transmembrane transport of small molecules" - - - - - - 599664 "ABC-family proteins mediated transport" - - - - - - 599665 "Transmembrane transport of small molecules" - - - - - - 600589 "ABC-family proteins mediated transport" - - - - - - 600590 "Transmembrane transport of small molecules" - - - - - - 602478 "ABC-family proteins mediated transport" - - - - - - 602479 "Transmembrane transport of small molecules" - - - - - - GO:0055085 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute. - GO:0055085 - transmembrane transport - - - - - - - - - - - - - GO:0055114 - - - - - - Redox - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons. - GO:0055114 - oxidation reduction - oxidoreductase process - - - - - - - - - - - - - - GO:0065002 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The directed movement of proteins in a cell, from one side of a membrane to another. - GO:0065002 - intracellular membrane translocation of a protein - intracellular protein transmembrane transport - intracellular protein transport across a membrane - - - - - - - - - - - - - GO:0070011 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the hydrolysis of peptide bonds formed between L-amino acids. - GO:0070011 - peptidase activity, acting on L-amino acid peptides - - - - - - - - - - - - GO:0070038 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine. - GO:0070038 - rRNA (pseudouridine-N3-)-methyltransferase - - - - - - - - - - - - - GO:0070043 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N7-methylguanine. - GO:0070043 - rRNA (guanine-N7-)-methyltransferase - - - - - - - - - - - - 2.2.1.9 - - - - - - 2.5.1.64-RXN - - - - - - GO:0070204 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: isochorismate + 2-oxoglutarate = 5-enolpyruvoyl-6-hydroxy-2-succinylcyclohex-3-ene-1-carboxylate + CO2. - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase - GO:0070204 - MenD - SEPHCHC synthase - - - - - - - - - - - - GO:0070207 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits. - GO:0070207 - protein homotrimer assembly - protein homotrimer biosynthesis - protein homotrimer biosynthetic process - protein homotrimer formation - protein homotrimerization - - - - - - - - - - - - GO:0070297 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Any process that modulates the frequency, rate or extent of signal transduction via a two-component phosphorelay signal transduction system.; - GO:0070297 - regulation of histidyl-aspartyl phosphorelay - regulation of two-component signal transduction system (phosphorelay) - - - - - - - - - - - - - 1.14.14.1 - - - - - - GO:0070330 - - - - - - UNSPECIFIC-MONOOXYGENASE-RXN - - - - - - e0551 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reduction of an aliphatic ring to yield an aromatic ring. - GO:0070330 - aromatase - estrogen synthetase - - - - - - - - - - - - - GO:0070403 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions. - GO:0070403 - NAD binding - oxidized NAD binding - oxidized nicotinamide adenine dinucleotide binding - - - - - - - - - - - - GO:0070469 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient. - GO:0070469 - membrane electron transport chain - respiratory chain - - - - - - - - - - - - 4.3.2.2 - - - - - - AICARSYN-RXN - - - - - - GO:0070626 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - Catalysis of the reaction: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate = fumarate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide. - (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) - GO:0070626 - adenylosuccinase - adenylosuccinate lyase - succino AMP-lyase - - - - - - - - - - - - GO:0070814 - - - http://www.bacillondex.org/cv/GO:GOAEBI - http://www.bacillondex.org/evidenceType/IMPD - The chemical reactions and pathways resulting in the formation of hydrogen sulfide, H2S. - GO:0070814 - hydrogen sulfide anabolism - hydrogen sulfide biosynthesis - hydrogen sulfide biosynthetic process - hydrogen sulfide formation - hydrogen sulfide synthesis - hydrogen sulphide biosynthesis - hydrogen sulphide biosynthetic process - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG - Clusters of Orthologous Groups of proteins (COGs) were delineated by comparing protein - sequences encoded in complete genomes, representing major phylogenetic lineages. Each COG consists - of individual proteins or groups of paralogs from at least 3 lineages and thus corresponds to an - ancient conserved domain. - http://www.ncbi.nlm.nih.gov/COG/ - Clusters of Orthologous Groups of proteins - - - - - - - - - GOAEBI - The GOA project aims to provide high-quality Gene Ontology (GO) annotations to proteins in - the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI) and is a central dataset - for other major multi-species databases; such as Ensembl and NCBI. - http://www.ebi.ac.uk/GOA/ - Gene Ontology Annotation - - - - - - - - - KEGG - KEGG (Kyoto Encyclopedia of Genes and Genomes) is a bioinformatics resource for linking - genomes to life and the environment. - http://www.genome.jp/kegg/ - Kyoto Encyclopedia of Genes and Genomes - - - - - - - - - - - - - COG0235 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1000 - COG0235 - - - - - - - - - - - - - COG3435 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1001 - COG3435 - - - - - - - - - - - - - COG1791 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1002 - COG1791 - - - - - - - - - - - - - COG3339 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1003 - COG3339 - - - - - - - - - - - - - COG1360 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1004 - COG1360 - - - - - - - - - - - - - COG1291 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1005 - COG1291 - - - - - - - - - - - - - COG0811 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1006 - COG0811 - - - - - - - - - - - - - COG0603 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1007 - COG0603 - - - - - - - - - - - - - COG0720 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 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1140 - COG1220 - - - - - - - - - - - - - COG4465 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1141 - COG4465 - - - - - - - - - - - - - COG1815 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1142 - COG1815 - - - - - - - - - - - - - COG4786 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1143 - COG4786 - - - - - - - - - - - - - COG1558 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1144 - COG1558 - - - - - - - - - - - - - - COG1677 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1145 - COG1677 - - - - - - - - - - - - - - COG1766 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1146 - COG1766 - - - - - - - - - - - - - COG1536 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1147 - COG1536 - - - - - - - - - - - - - - COG1317 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1148 - COG1317 - - - - - - - - - - - - - COG1156 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1149 - COG1156 - - - - - - - - - - - - - COG3144 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1150 - COG3144 - - - - - - - - - - - - - COG1843 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1151 - COG1843 - - - - - - - - - - - - - COG1749 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1152 - COG1749 - - - - - - - - - - - - - COG1582 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1153 - COG1582 - - - - - - - - - - - - - COG1580 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1154 - COG1580 - - - - - - - - - - - - BSU00010 - - - - - - - - - - - - - - PATH:KO00010 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11547 - Derived KO Pathway for path:bsu00010 - - - - - - - - - - - - PATH:MAP00710 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11548 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00020 - - - - - - - - - - - - - - - COG1868 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1155 - COG1868 - - - - - - - - - - - - PATH:KO00020 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11550 - Derived KO Pathway for path:bsu00020 - - - - - - - - - - - - BSU00030 - - - - - - - - - - - - - - PATH:KO00030 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11552 - Derived KO Pathway for path:bsu00030 - - - - - - - - - - - - BSU00040 - - - - - - - - - - - - - - PATH:KO00040 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11554 - Derived KO Pathway for path:bsu00040 - - - - - - - - - - - - BSU00051 - - - - - - - - - - - - - - PATH:KO00051 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11556 - Derived KO Pathway for path:bsu00051 - - - - - - - - - - - - BSU00052 - - - - - - - - - - - - - - PATH:KO00052 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11558 - Derived KO Pathway for path:bsu00052 - - - - - - - - - - - - BSU00053 - - - - - - - - - - - - - - - - COG1886 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1156 - COG1886 - - - - - - - - - - - - PATH:KO00053 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11560 - Derived KO Pathway for path:bsu00053 - - - - - - - - - - - - BSU00061 - - - - - - - - - - - - - - PATH:KO00061 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11562 - Derived KO Pathway for path:bsu00061 - - - - - - - - - - - - BSU00062 - - - - - - - - - - - - - - PATH:KO00062 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11564 - Derived KO Pathway for path:bsu00062 - - - - - - - - - - - - BSU00071 - - - - - - - - - - - - - - PATH:KO00071 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11566 - Derived KO Pathway for path:bsu00071 - - - - - - - - - - - - PATH:MAP00252 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11567 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00072 - - - - - - - - - - - - - - PATH:KO00072 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11569 - Derived KO Pathway for path:bsu00072 - - - - - - - - - - - - - - COG1776 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1157 - COG1776 - - - - - - - - - - - - BSU00130 - - - - - - - - - - - - - - PATH:KO00130 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11571 - Derived KO Pathway for path:bsu00130 - - - - - - - - - - - - BSU00190 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00190 - 11572 - http://www.genome.jp/kegg/pathway/bsu/bsu00190.png - Oxidative phosphorylation - - - - - - - - - - - - PATH:KO00190 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11573 - Derived KO Pathway for path:bsu00190 - - - - - - - - - - - - BSU00230 - - - - - - - - - - - - - - PATH:KO00230 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11575 - Derived KO Pathway for path:bsu00230 - - - - - - - - - - - - BSU00232 - - - - - - - - - - - - - - PATH:KO00232 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11577 - Derived KO Pathway for path:bsu00232 - - - - - - - - - - - - BSU00240 - - - - - - - - - - - - - - PATH:KO00240 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11579 - Derived KO Pathway for path:bsu00240 - - - - - - - - - - - - - - COG1338 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1158 - COG1338 - - - - - - - - - - - - BSU00250 - - - - - - - - - - - - - - PATH:KO00250 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11581 - Derived KO Pathway for path:bsu00250 - - - - - - - - - - - - PATH:MAP00530 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11582 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00253 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11583 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00260 - - - - - - - - - - - - - - PATH:KO00260 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11585 - Derived KO Pathway for path:bsu00260 - - - - - - - - - - - - BSU00270 - - - - - - - - - - - - - - PATH:KO00270 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11587 - Derived KO Pathway for path:bsu00270 - - - - - - - - - - - - BSU00280 - - - - - - - - - - - - - - PATH:KO00280 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11589 - Derived KO Pathway for path:bsu00280 - - - - - - - - - - - - - - COG1987 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1159 - COG1987 - - - - - - - - - - - - BSU00281 - - - - - - - - - - - - - - PATH:KO00281 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11591 - Derived KO Pathway for path:bsu00281 - - - - - - - - - - - - BSU00290 - - - - - - - - - - - - - - PATH:KO00290 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11593 - Derived KO Pathway for path:bsu00290 - - - - - - - - - - - - BSU00300 - - - - - - - - - - - - - - PATH:KO00300 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11595 - Derived KO Pathway for path:bsu00300 - - - - - - - - - - - - PATH:MAP00960 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11596 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00310 - - - - - - - - - - - - - - PATH:KO00310 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11598 - Derived KO Pathway for path:bsu00310 - - - - - - - - - - - - BSU00311 - - - - - - - - - - - - - - - - COG1684 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1160 - COG1684 - - - - - - - - - - - - PATH:KO00311 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11600 - Derived KO Pathway for path:bsu00311 - - - - - - - - - - - - PATH:MAP00312 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11601 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP07012 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11602 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00330 - - - - - - - - - - - - - - PATH:KO00330 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11604 - Derived KO Pathway for path:bsu00330 - - - - - - - - - - - - BSU00340 - - - - - - - - - - - - - - PATH:KO00340 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11606 - Derived KO Pathway for path:bsu00340 - - - - - - - - - - - - BSU00350 - - - - - - - - - - - - - - PATH:KO00350 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11608 - Derived KO Pathway for path:bsu00350 - - - - - - - - - - - - PATH:MAP00950 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11609 - Abstract referenced KO Pathway - - - - - - - - - - - - - - COG1298 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1161 - COG1298 - - - - - - - - - - - - BSU00360 - - - - - - - - - - - - - - PATH:KO00360 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11611 - Derived KO Pathway for path:bsu00360 - - - - - - - - - - - - BSU00361 - - - - - - - - - - - - - - PATH:KO00361 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11613 - Derived KO Pathway for path:bsu00361 - - - - - - - - - - - - BSU00362 - - - - - - - - - - - - - - PATH:KO00362 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11615 - Derived KO Pathway for path:bsu00362 - - - - - - - - - - - - PATH:MAP00629 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11616 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00622 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11617 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00380 - - - - - - - - - - - - - - PATH:KO00380 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11619 - Derived KO Pathway for path:bsu00380 - - - - - - - - - - - - - COG1419 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1162 - COG1419 - - - - - - - - - - - - BSU00400 - - - - - - - - - - - - - - PATH:KO00400 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11621 - Derived KO Pathway for path:bsu00400 - - - - - - - - - - - - PATH:MAP00940 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11622 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00402 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11623 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00901 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11624 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP01058 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11625 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00231 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11626 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00401 - - - - - - - - - - - - - - PATH:KO00401 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11628 - Derived KO Pathway for path:bsu00401 - - - - - - - - - - - - BSU00410 - - - - - - - - - - - - - - - COG1348 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1163 - COG1348 - - - - - - - - - - - - PATH:KO00410 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11630 - Derived KO Pathway for path:bsu00410 - - - - - - - - - - - - BSU00430 - - - - - - - - - - - - - - PATH:KO00430 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11632 - Derived KO Pathway for path:bsu00430 - - - - - - - - - - - - BSU00440 - - - - - - - - - - - - - - PATH:KO00440 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11634 - Derived KO Pathway for path:bsu00440 - - - - - - - - - - - - BSU00450 - - - - - - - - - - - - - - PATH:KO00450 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11636 - Derived KO Pathway for path:bsu00450 - - - - - - - - - - - - BSU00460 - - - - - - - - - - - - - - PATH:KO00460 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11638 - Derived KO Pathway for path:bsu00460 - - - - - - - - - - - - BSU00471 - - - - - - - - - - - - - - - - COG2201 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1164 - COG2201 - - - - - - - - - - - - PATH:KO00471 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11640 - Derived KO Pathway for path:bsu00471 - - - - - - - - - - - - PATH:MAP00251 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11641 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00472 - - - - - - - - - - - - - - PATH:KO00472 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11643 - Derived KO Pathway for path:bsu00472 - - - - - - - - - - - - BSU00473 - - - - - - - - - - - - - - PATH:KO00473 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11645 - Derived KO Pathway for path:bsu00473 - - - - - - - - - - - - BSU00480 - - - - - - - - - - - - - - PATH:KO00480 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11647 - Derived KO Pathway for path:bsu00480 - - - - - - - - - - - - BSU00500 - - - - - - - - - - - - - - PATH:KO00500 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11649 - Derived KO Pathway for path:bsu00500 - - - - - - - - - - - - - - COG0643 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1165 - COG0643 - - - - - - - - - - - - BSU00511 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00511 - 11650 - http://www.genome.jp/kegg/pathway/bsu/bsu00511.png - Other glycan degradation - - - - - - - - - - - - PATH:KO00511 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11651 - Derived KO Pathway for path:bsu00511 - - - - - - - - - - - - BSU00520 - - - - - - - - - - - - - - PATH:KO00520 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11653 - Derived KO Pathway for path:bsu00520 - - - - - - - - - - - - BSU00521 - - - - - - - - - - - - - - PATH:KO00521 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11655 - Derived KO Pathway for path:bsu00521 - - - - - - - - - - - - BSU00523 - - - - - - - - - - - - - - PATH:KO00523 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11657 - Derived KO Pathway for path:bsu00523 - - - - - - - - - - - - BSU00550 - - - - - - - - - - - - - - PATH:KO00550 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11659 - Derived KO Pathway for path:bsu00550 - - - - - - - - - - - - - - COG1871 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1166 - COG1871 - - - - - - - - - - - - BSU00561 - - - - - - - - - - - - - - PATH:KO00561 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11661 - Derived KO Pathway for path:bsu00561 - - - - - - - - - - - - BSU00562 - - - - - - - - - - - - - - PATH:KO00562 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11663 - Derived KO Pathway for path:bsu00562 - - - - - - - - - - - - BSU00564 - - - - - - - - - - - - - - PATH:KO00564 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11665 - Derived KO Pathway for path:bsu00564 - - - - - - - - - - - - PATH:MAP00563 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11666 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00590 - - - - - - - - - - - - - - PATH:KO00590 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11668 - Derived KO Pathway for path:bsu00590 - - - - - - - - - - - - PATH:MAP07034 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11669 - Abstract referenced KO Pathway - - - - - - - - - - - - - COG0052 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1167 - COG0052 - - - - - - - - - - - - PATH:MAP00591 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11670 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00600 - - - - - - - - - - - - - - PATH:KO00600 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11672 - Derived KO Pathway for path:bsu00600 - - - - - - - - - - - - PATH:MAP00601 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11673 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00604 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11674 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00602 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11675 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00603 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11676 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00620 - - - - - - - - - - - - - - PATH:KO00620 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11678 - Derived KO Pathway for path:bsu00620 - - - - - - - - - - - - BSU00624 - - - - - - - - - - - - - - - COG0264 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1168 - COG0264 - - - - - - - - - - - - PATH:KO00624 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11680 - Derived KO Pathway for path:bsu00624 - - - - - - - - - - - - BSU00626 - - - - - - - - - - - - - - PATH:KO00626 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11682 - Derived KO Pathway for path:bsu00626 - - - - - - - - - - - - BSU00628 - - - - - - - - - - - - - - PATH:KO00628 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11684 - Derived KO Pathway for path:bsu00628 - - - - - - - - - - - - BSU00630 - - - - - - - - - - - - - - PATH:KO00630 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11686 - Derived KO Pathway for path:bsu00630 - - - - - - - - - - - - BSU00631 - - - - - - - - - - - - - - PATH:KO00631 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11688 - Derived KO Pathway for path:bsu00631 - - - - - - - - - - - - BSU00632 - - - - - - - - - - - - - - - COG0233 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1169 - COG0233 - - - - - - - - - - - - PATH:KO00632 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11690 - Derived KO Pathway for path:bsu00632 - - - - - - - - - - - - PATH:MAP00621 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11691 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00642 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11692 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00640 - - - - - - - - - - - - - - PATH:KO00640 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11694 - Derived KO Pathway for path:bsu00640 - - - - - - - - - - - - BSU00641 - - - - - - - - - - - - - - PATH:KO00641 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11696 - Derived KO Pathway for path:bsu00641 - - - - - - - - - - - - BSU00650 - - - - - - - - - - - - - - PATH:KO00650 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11698 - Derived KO Pathway for path:bsu00650 - - - - - - - - - - - - PATH:MAP01056 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11699 - Abstract referenced KO Pathway - - - - - - - - - - - - - COG0020 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1170 - COG0020 - - - - - - - - - - - - BSU00660 - - - - - - - - - - - - - - PATH:KO00660 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11701 - Derived KO Pathway for path:bsu00660 - - - - - - - - - - - - BSU00670 - - - - - - - - - - - - - - PATH:KO00670 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11703 - Derived KO Pathway for path:bsu00670 - - - - - - - - - - - - BSU00680 - - - - - - - - - - - - - - PATH:KO00680 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11705 - Derived KO Pathway for path:bsu00680 - - - - - - - - - - - - BSU00730 - - - - - - - - - - - - - - PATH:KO00730 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11707 - Derived KO Pathway for path:bsu00730 - - - - - - - - - - - - PATH:MAP00272 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11708 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00100 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11709 - Abstract referenced KO Pathway - - - - - - - - - - - - - COG0575 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1171 - COG0575 - - - - - - - - - - - - BSU00740 - - - - - - - - - - - - - - PATH:KO00740 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11711 - Derived KO Pathway for path:bsu00740 - - - - - - - - - - - - BSU00750 - - - - - - - - - - - - - - PATH:KO00750 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11713 - Derived KO Pathway for path:bsu00750 - - - - - - - - - - - - BSU00760 - - - - - - - - - - - - - - PATH:KO00760 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11715 - Derived KO Pathway for path:bsu00760 - - - - - - - - - - - - BSU00770 - - - - - - - - - - - - - - PATH:KO00770 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11717 - Derived KO Pathway for path:bsu00770 - - - - - - - - - - - - BSU00780 - - - - - - - - - - - - - - PATH:KO00780 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11719 - Derived KO Pathway for path:bsu00780 - - - - - - - - - - - - - COG0743 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1172 - COG0743 - - - - - - - - - - - - BSU00785 - - - - - - - - - - - - - - PATH:KO00785 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11721 - Derived KO Pathway for path:bsu00785 - - - - - - - - - - - - BSU00790 - - - - - - - - - - - - - - PATH:KO00790 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11723 - Derived KO Pathway for path:bsu00790 - - - - - - - - - - - - BSU00860 - - - - - - - - - - - - - - PATH:KO00860 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11725 - Derived KO Pathway for path:bsu00860 - - - - - - - - - - - - BSU00900 - - - - - - - - - - - - - - PATH:KO00900 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11727 - Derived KO Pathway for path:bsu00900 - - - - - - - - - - - - PATH:MAP00906 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11728 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00904 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11729 - Abstract referenced KO Pathway - - - - - - - - - - - - - COG0750 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1173 - COG0750 - - - - - - - - - - - - PATH:MAP00909 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11730 - Abstract referenced KO Pathway - - - - - - - - - - - - PATH:MAP00902 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11731 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00903 - - - - - - - - - - - - - - PATH:KO00903 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11733 - Derived KO Pathway for path:bsu00903 - - - - - - - - - - - - BSU00910 - - - - - - - - - - - - - - PATH:KO00910 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11735 - Derived KO Pathway for path:bsu00910 - - - - - - - - - - - - BSU00920 - - - - - - - - - - - - - - PATH:KO00920 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11737 - Derived KO Pathway for path:bsu00920 - - - - - - - - - - - - PATH:MAP00720 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11738 - Abstract referenced KO Pathway - - - - - - - - - - - - BSU00930 - - - - - - - - - - - - - - - COG1994 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1174 - COG1994 - - - - - - - - - - - - PATH:KO00930 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11740 - Derived KO Pathway for path:bsu00930 - - - - - - - - - - - - BSU00970 - - - - - - - - - - - - - - PATH:KO00970 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11742 - Derived KO Pathway for path:bsu00970 - - - - - - - - - - - - BSU01040 - - - - - - - - - - - - - - PATH:KO01040 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11744 - Derived KO Pathway for path:bsu01040 - - - - - - - - - - - - BSU01053 - - - - - - - - - - - - - - PATH:KO01053 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11746 - Derived KO Pathway for path:bsu01053 - - - - - - - - - - - - BSU01054 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu01054 - 11747 - http://www.genome.jp/kegg/pathway/bsu/bsu01054.png - Nonribosomal peptide structures - - - - - - - - - - - - PATH:KO01054 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11748 - Derived KO Pathway for path:bsu01054 - - - - - - - - - - - - BSU01100 - - - - - - - - - - - - - - - COG0442 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1175 - COG0442 - - - - - - - - - - - - PATH:KO01100 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11750 - Derived KO Pathway for path:bsu01100 - - - - - - - - - - - - BSU02010 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu02010 - 11751 - http://www.genome.jp/kegg/pathway/bsu/bsu02010.png - ABC transporters - - - - - - - - - - - - PATH:KO02010 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11752 - Derived KO Pathway for path:bsu02010 - - - - - - - - - - - - BSU02020 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu02020 - 11753 - http://www.genome.jp/kegg/pathway/bsu/bsu02020.png - Two-component system - - - - - - - - - - - - PATH:KO02020 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11754 - Derived KO Pathway for path:bsu02020 - - - - - - - - - - - - BSU02030 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu02030 - 11755 - http://www.genome.jp/kegg/pathway/bsu/bsu02030.png - Bacterial chemotaxis - - - - - - - - - - - - PATH:KO02030 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11756 - Derived KO Pathway for path:bsu02030 - - - - - - - - - - - - BSU02040 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu02040 - 11757 - http://www.genome.jp/kegg/pathway/bsu/bsu02040.png - Flagellar assembly - - - - - - - - - - - - PATH:KO02040 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11758 - Derived KO Pathway for path:bsu02040 - - - - - - - - - - - - BSU02060 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu02060 - 11759 - http://www.genome.jp/kegg/pathway/bsu/bsu02060.png - Phosphotransferase system (PTS) - - - - - - - - - - - - - COG2176 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1176 - COG2176 - - - - - - - - - - - - PATH:KO02060 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11760 - Derived KO Pathway for path:bsu02060 - - - - - - - - - - - - BSU03010 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03010 - 11761 - http://www.genome.jp/kegg/pathway/bsu/bsu03010.png - Ribosome - - - - - - - - - - - - PATH:KO03010 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11762 - Derived KO Pathway for path:bsu03010 - - - - - - - - - - - - BSU03018 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03018 - 11763 - http://www.genome.jp/kegg/pathway/bsu/bsu03018.png - RNA degradation - - - - - - - - - - - - PATH:KO03018 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11764 - Derived KO Pathway for path:bsu03018 - - - - - - - - - - - - BSU03020 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03020 - 11765 - http://www.genome.jp/kegg/pathway/bsu/bsu03020.png - RNA polymerase - - - - - - - - - - - - PATH:KO03020 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11766 - Derived KO Pathway for path:bsu03020 - - - - - - - - - - - - BSU03030 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03030 - 11767 - http://www.genome.jp/kegg/pathway/bsu/bsu03030.png - DNA replication - - - - - - - - - - - - PATH:KO03030 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11768 - Derived KO Pathway for path:bsu03030 - - - - - - - - - - - - BSU03060 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03060 - 11769 - http://www.genome.jp/kegg/pathway/bsu/bsu03060.png - Protein export - - - - - - - - - - - - - COG0847 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1177 - COG0847 - - - - - - - - - - - - PATH:KO03060 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11770 - Derived KO Pathway for path:bsu03060 - - - - - - - - - - - - BSU03070 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03070 - 11771 - http://www.genome.jp/kegg/pathway/bsu/bsu03070.png - Bacterial secretion system - - - - - - - - - - - - PATH:KO03070 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11772 - Derived KO Pathway for path:bsu03070 - - - - - - - - - - - - BSU03410 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03410 - 11773 - http://www.genome.jp/kegg/pathway/bsu/bsu03410.png - Base excision repair - - - - - - - - - - - - PATH:KO03410 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11774 - Derived KO Pathway for path:bsu03410 - - - - - - - - - - - - BSU03420 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03420 - 11775 - http://www.genome.jp/kegg/pathway/bsu/bsu03420.png - Nucleotide excision repair - - - - - - - - - - - - PATH:KO03420 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11776 - Derived KO Pathway for path:bsu03420 - - - - - - - - - - - - BSU03430 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03430 - 11777 - http://www.genome.jp/kegg/pathway/bsu/bsu03430.png - Mismatch repair - - - - - - - - - - - - PATH:KO03430 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11778 - Derived KO Pathway for path:bsu03430 - - - - - - - - - - - - BSU03440 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03440 - 11779 - http://www.genome.jp/kegg/pathway/bsu/bsu03440.png - Homologous recombination - - - - - - - - - - - - - COG0587 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1178 - COG0587 - - - - - - - - - - - - PATH:KO03440 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11780 - Derived KO Pathway for path:bsu03440 - - - - - - - - - - - - BSU03450 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu03450 - 11781 - http://www.genome.jp/kegg/pathway/bsu/bsu03450.png - Non-homologous end-joining - - - - - - - - - - - - PATH:KO03450 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11782 - Derived KO Pathway for path:bsu03450 - - - - - - - - - - - - PATH:MAP00710 - - - - - - - - - - - - - - PATH:MAP00252 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00252 - 11784 - Alanine and aspartate metabolism - Alanine and aspartate metabolism - - - - - - - - - - - - PATH:MAP00530 - - - - - - - - - - - - - - PATH:MAP00253 - - - - - - - - - - - - - - PATH:MAP00960 - - - - - - - - - - - - - - PATH:MAP00312 - - - - - - - - - - - - - - PATH:MAP07012 - - - - - - - - - - - - - - - - COG1387 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1179 - COG1387 - - - - - - - - - - - - PATH:MAP00950 - - - - - - - - - - - - - - PATH:MAP00629 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00629 - 11791 - Carbazole degradation - Carbazole degradation - - - - - - - - - - - - PATH:MAP00622 - - - - - - - - - - - - - - PATH:MAP00940 - - - - - - - - - - - - - - PATH:MAP00402 - - - - - - - - - - - - - - PATH:MAP00901 - - - - - - - - - - - - - - PATH:MAP01058 - - - - - - - - - - - - - - PATH:MAP00231 - - - - - - - - - - - - - - PATH:MAP00251 - - - - - - - - - - - - - - PATH:MAP00563 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00563 - 11799 - Glycosylphosphatidylinositol(GPI)-anchor biosynthesis - Glycosylphosphatidylinositol(GPI)-anchor biosynthesis - - - - - - - - - - - - - COG0613 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1180 - COG0613 - - - - - - - - - - - - PATH:MAP07034 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map07034 - 11800 - Eicosanoids - Eicosanoids - - - - - - - - - - - - PATH:MAP00591 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00591 - 11801 - Linoleic acid metabolism - Linoleic acid metabolism - - - - - - - - - - - - PATH:MAP00601 - - - - - - - - - - - - - - PATH:MAP00604 - - - - - - - - - - - - - - PATH:MAP00602 - - - - - - - - - - - - - - PATH:MAP00603 - - - - - - - - - - - - - - PATH:MAP00621 - - - - - - - - - - - - - - PATH:MAP00642 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00642 - 11807 - Ethylbenzene degradation - Ethylbenzene degradation - - - - - - - - - - - - PATH:MAP01056 - - - - - - - - - - - - - - PATH:MAP00272 - - - - - - - - - - - - - - - COG0779 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1181 - COG0779 - - - - - - - - - - - - PATH:MAP00100 - - - - - - - - - - - - - - PATH:MAP00906 - - - - - - - - - - - - - - PATH:MAP00904 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00904 - 11812 - Diterpenoid biosynthesis - Diterpenoid biosynthesis - - - - - - - - - - - - PATH:MAP00909 - - - - - - - - - - - - - - PATH:MAP00902 - - - - - - - - - - - - - - PATH:MAP00720 - - - - - - - - - - - - - - - COG0195 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1182 - COG0195 - - - - - - - - - - - - - COG2740 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1183 - COG2740 - - - - - - - - - - - - - COG1550 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1184 - COG1550 - - - - - - - - - - - - - COG0858 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1185 - COG0858 - - - - - - - - - - - - - COG0130 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1186 - COG0130 - - - - - - - - - - - - - COG0196 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1187 - COG0196 - - - - - - - - - - - - - COG0184 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1188 - COG0184 - - - - - - - - - - - - - COG0689 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1189 - COG0689 - - - - - - - - - - - - - COG0612 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1190 - COG0612 - - - - - - - - - - - - - COG0169 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1191 - COG0169 - - - - - - - - - - - - - COG0686 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1192 - COG0686 - - - - - - - - - - - - - COG0136 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1193 - COG0136 - - - - - - - - - - - - - COG1782 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1194 - COG1782 - - - - - - - - - - - - - - COG0616 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1195 - COG0616 - - - - - - - - - - - - - - COG0740 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1196 - COG0740 - - - - - - - - - - - - - COG0035 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1197 - COG0035 - - - - - - - - - - - - - COG1426 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1198 - COG1426 - - - - - - - - - - - - - COG1058 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1199 - COG1058 - - - - - - - - - - - - - COG1546 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1200 - COG1546 - - - - - - - - - - - - - COG0468 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1201 - COG0468 - - - - - - - - - - - - - COG1418 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1202 - COG1418 - - - - - - - - - - - - - COG1692 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1203 - COG1692 - - - - - - - - - - - - - COG2359 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1204 - COG2359 - - - - - - - - - - - - - COG0156 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1205 - COG0156 - - - - - - - - - - - - - COG0621 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1206 - COG0621 - - - - - - - - - - - - - COG0249 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1207 - COG0249 - - - - - - - - - - - - - COG0323 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1208 - COG0323 - - - - - - - - - - - - - COG2070 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1209 - COG2070 - - - - - - - - - - - - - - COG0236 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1210 - COG0236 - - - - - - - - - - - - - COG0324 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1211 - COG0324 - - - - - - - - - - - - - COG1923 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1212 - COG1923 - - - - - - - - - - - - - COG1780 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1213 - COG1780 - - - - - - - - - - - - - COG0209 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1214 - COG0209 - - - - - - - - - - - - - COG0208 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1215 - COG0208 - - - - - - - - - - - - - COG4112 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1216 - COG4112 - - - - - - - - - - - - - COG2262 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1217 - COG2262 - - - - - - - - - - - - - COG1084 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1218 - COG1084 - - - - - - - - - - - - - COG0370 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1219 - COG0370 - - - - - - - - - - - - - COG4100 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1220 - COG4100 - - - - - - - - - - - - - COG0174 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1221 - COG0174 - - - - - - - - - - - - - - COG1974 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1222 - COG1974 - - - - - - - - - - - - - COG2209 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1223 - COG2209 - - - - - - - - - - - - - COG3507 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1224 - COG3507 - - - - - - - - - - - - - COG2115 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1225 - COG2115 - - - - - - - - - - - - - COG0756 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1226 - COG0756 - - - - - - - - - - - - - COG0207 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1227 - COG0207 - - - - - - - - - - - - - COG3832 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1228 - COG3832 - - - - - - - - - - - - - COG4224 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1229 - COG4224 - - - - - - - - - - - - - - COG1154 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1230 - COG1154 - - - - - - - - - - - - - COG3958 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1231 - COG3958 - - - - - - - - - - - - - COG3763 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1232 - COG3763 - - - - - - - - - - - - - COG0785 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1233 - COG0785 - - - - - - - - - - - - - COG0065 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1234 - COG0065 - - - - - - - - - - - - - COG0066 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1235 - COG0066 - - - - - - - - - - - - - COG1048 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1236 - COG1048 - - - - - - - - - - - - - COG0824 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1237 - COG0824 - - - - - - - - - - - - - COG0316 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1238 - COG0316 - - - - - - - - - - - - - COG0344 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1239 - COG0344 - - - - - - - - - - - - - COG1832 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1240 - COG1832 - - - - - - - - - - - - - COG2730 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1241 - COG2730 - - - - - - - - - - - - - COG5520 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1242 - COG5520 - - - - - - - - - - - - - COG2246 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1243 - COG2246 - - - - - - - - - - - - - COG0836 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1244 - COG0836 - - - - - - - - - - - - - COG2404 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1245 - COG2404 - - - - - - - - - - - - - COG0618 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1246 - COG0618 - - - - - - - - - - - - - COG4799 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1247 - COG4799 - - - - - - - - - - - - - COG0119 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1248 - COG0119 - - - - - - - - - - - - - COG1649 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1249 - COG1649 - - - - - - - - - - - - - COG2027 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1250 - COG2027 - - - - - - - - - - - - - COG2017 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1251 - COG2017 - - - - - - - - - - - - - COG0405 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1252 - COG0405 - - - - - - - - - - - - - COG0067 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 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COG3386 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1725 - COG3386 - - - - - - - - - - - - - - - - - - - - 0018685 - - - - - - - - - - - - - - 0033188 - - - - - - - - - - - - - - - COG1910 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1726 - COG1910 - - - - - - - - - - - - 0004758 - - - - - - COG0156 - - - - - - - - - - - - - - 0047560 - - - - - - COG1028 - - - - - - - - - - - - - - 0001733 - - - - - - - - - - - - - - 0004348 - - - - - - - - - - - - - - - COG1613 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1727 - COG1613 - - - - - - - - - - - - GT1 - - - - - - - - - - - - - - 0004308 - - - - - - COG4409 - - - - - - - - - - - - - - 0004308 - - - - - - - - - - - - - - - COG3973 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1728 - COG3973 - - - - - - - - - - - - 0017040 - - - - - - - - - - - - - - 0017040 - - - - - 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http://www.bacillondex.org/evidenceType/IMPD - 177 - COG2501 - - - - - - - - - - - - - COG1820 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1770 - COG1820 - - - - - - - - - - - - 0008660 - - - - - - COG2515 - - - - - - - - - - - - - - 0047760 - - - - - - - - - - - - - - 0050076 - - - - - - COG3473 - - - - - - - - - - - - - - - COG1950 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1771 - COG1950 - - - - - - - - - - - - 0047577 - - - - - - - - - - - - - - 0004085 - - - - - - COG1960 - - - - - - - - - - - - - - 0047989 - - - - - - - - - - - - - - 0030729 - - - - - - COG0365 - - - - - - - - - - - - - - - - COG1983 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1772 - COG1983 - - - - - - - - - - - - 0047545 - - - - - - - - - - - - - - 0018730 - - - - - - - - - - - - - - 0018730 - - - - - - - - - - - - - - - COG1344 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 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http://www.bacillondex.org/evidenceType/IMPD - 1802 - COG1922 - - - - - - - - - - - - 0018493 - - - - - - COG1145 - - - - - - - - - - - - - - 0018493 - - - - - - COG1145 - - - - - - - - - - - - - - 0018493 - - - - - - COG2191 - - - - - - - - - - - - - - - COG4193 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1803 - COG4193 - - - - - - - - - - - - 0050454 - - - - - - COG3259 - - - - - - - - - - - - - - 0050454 - - - - - - COG1035 - - - - - - - - - - - - - - COG0680 - - - - - - - - - - - - - - - COG0814 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1804 - COG0814 - - - - - - - - - - - - 0050454 - - - - - - COG1941 - - - - - - - - - - - - - - 0018537 - - - - - - - - - - - - - - 0004322 - - - - - - 0004323 - - - - - - - - - - - - - - 0016630 - - - - - - COG1028 - - - - - - - - - - - - - - - COG2843 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1805 - COG2843 - - - 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http://www.bacillondex.org/evidenceType/IMPD - 1809 - COG1013 - - - - - - - - - - - - - - - - - - - - 0043757 - - - - - - COG1270 - - - - - - - - - - - - - - 0016851 - - - - - - COG1429 - - - - - - - - - - - - - - - COG0187 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 181 - COG0187 - - - - - - - - - - - - - COG5337 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1810 - COG5337 - - - - - - - - - - - - 0016851 - - - - - - COG1240 - - - - - - - - - - - - - - 0016851 - - - - - - COG1239 - - - - - - - - - - - - - - 0046406 - - - - - - COG0500 - - - - - - - - - - - - - - 0016491 - - - - - - 0046025 - - - - - - COG2241 - - - - - - COG2242 - - - - - - - - - - - - - - - COG2059 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1811 - COG2059 - - - - - - - - - - - - COG2073 - - - - - - - - - - - - - - COG1903 - - - - - - - - - - - - - - 0046026 - - - - - - COG2875 - - - - - 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http://www.bacillondex.org/evidenceType/IMPD - 1815 - COG4464 - - - - - - - - - - - - 0016491 - - - - - - COG2242 - - - - - - - - - - - - - - 0030788 - - - - - - COG2243 - - - - - - - - - - - - - - 0043818 - - - - - - COG0155 - - - - - - - - - - - - - - - COG0629 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1816 - COG0629 - - - - - - - - - - - - 0008817 - - - - - - COG2109 - - - - - - - - - - - - - - - - - - - - - - 0043756 - - - - - - COG1865 - - - - - - - - - - - - - - 0051921 - - - - - - COG1492 - - - - - - - - - - - - - - - COG1970 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1817 - COG1970 - - - - - - - - - - - - 0051116 - - - - - - COG1429 - - - - - - - - - - - - - - COG1797 - - - - - - - - - - - - - - COG1797 - - - - - - - - - - - - - - - - COG1953 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1818 - COG1953 - - - - - - - - - - - - 0047705 - - - - - - COG2132 - - - - - - - - - - - - - - 0050618 - - - - - - - - - - - - - - 0050617 - - - - - - - - - - - - - - - COG0004 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1819 - COG0004 - - - - - - - - - - - - 0046408 - - - - - - COG0382 - - - - - - - - - - - - - - 0047746 - - - - - - - - - - - - - - 0008752 - - - - - - 0047138 - - - - - - COG0543 - - - - - - - - - - - - - - 0050620 - - - - - - - - - - - - - - - COG0188 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 182 - COG0188 - - - - - - - - - - - - - COG0347 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1820 - COG0347 - - - - - - - - - - - - 0004109 - - - - - - COG0408 - - - - - - - - - - - - - - COG0142 - - - - - - - - - - - - - - 0004311 - - - - - - COG0142 - - - - - - - - - - - - - - - COG1502 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1821 - COG1502 - - - - - - - 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http://www.bacillondex.org/evidenceType/IMPD - 1843 - COG0504 - - - - - - - - - - - - 0009905 - - - - - - - - - - - - - - 0018753 - - - - - - - - - - - - - - 0018764 - - - - - - - - - - - - - - 0018763 - - - - - - - - - - - - - - - COG4294 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1844 - COG4294 - - - - - - - - - - - - 0018788 - - - - - - - - - - - - - - 0018623 - - - - - - COG2146 - - - - - - - - - - - - - - 0018623 - - - - - - COG5517 - - - - - - - - - - - - - - - COG2181 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1845 - COG2181 - - - - - - - - - - - - COG0543 - - - - - - - - - - - - - - 0050422 - - - - - - Q9M7N7 - - - - - - - - - - - - - - 0016844 - - - - - - - - - - - - - - - COG2180 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1846 - COG2180 - - - - - - - - - - - - 0004064 - - - - - - COG2755 - - - - - - - - - - - - - - 0016207 - - - - - - - - - - - - - - 0016165 - - - - - - - - - - - - - - 0009978 - - - - - - - - - - - - - - - COG1140 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1847 - COG1140 - - - - - - - - - - - - 0046423 - - - - - - - - - - - - - - 0016629 - - - - - - - - - - - - - - 0016213 - - - - - - COG3239 - - - - - - - - - - - - - - - COG1142 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1848 - COG1142 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG0437 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1849 - COG0437 - - - - - - - - - - - - - - - - - - - - COG3239 - - - - - - - - - - - - - - 0045436 - - - - - - - - - - - - - - 0045435 - - - - - - - - - - - - - - F - - - METABOLISM - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 185 - Nucleotide transport and metabolism - F - - - - - - - - - - - - - COG5013 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1850 - COG5013 - - - - - - - - - - - - - - - - - - - - 0016719 - - - - - - COG3349 - - - - - - - - - - - - - - COG1233 - - - - - - - - - - - - - - - COG0664 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1851 - COG0664 - - - - - - - - - - - - 0016166 - - - - - - COG1233 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG0018 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1852 - COG0018 - - - - - - - - - - - - 0016166 - - - - - - COG3349 - - - - - - - - - - - - - - - - - - - - - - 0050550 - - - - - - - - - - - - - - 0018796 - - - - - - - - - - - - - - - COG4506 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1853 - COG4506 - - - - - - - - - - - - 0009899 - - - - - - - - - - - - - - 0018620 - - - - - - - - - - - - - - - - - - - - - - - COG0010 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1854 - COG0010 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG0421 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1855 - COG0421 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0008470 - - - - - - COG1960 - - - - - - - - - - - - - - 0018693 - - - - - - - - - - - - - - - COG2524 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1856 - COG2524 - - - - - - - - - - - - 0008398 - - - - - - COG2124 - - - - - - - - - - - - - - 0000250 - - - - - - COG1657 - - - - - - - - - - - - - - COG3000 - - - - - - - - - - - - - - - COG3465 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1857 - COG3465 - - - - - - - - - - - - 0050613 - - - - - - - - - - - - - - 0050576 - - - - - - - - - - - - - - 0047012 - - - - - - COG0451 - - - - - - - - - - - - - - - COG3253 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1858 - COG3253 - - - - - - - - - - - - 0004310 - - - - - - COG1562 - - - - - - - - - - - - - - 0004506 - - - - - - - - - - - - - - - - - - - - - - 0018666 - - - - - - - - - - - - - - - COG1917 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1859 - COG1917 - - - - - - - - - - - - 0018677 - - - - - - - - - - - - - - - - - - - - - - 0004833 - - - - - - COG3483 - - - - - - - - - - - - - - - COG0516 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 186 - COG0516 - - - - - - - - - - - - - COG1898 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1860 - COG1898 - - - - - - - - - - - - 0008123 - - - - - - - - - - - - - - 0000246 - - - - - - - - - - - - - - 0004398 - - - - - - - - - - - - - - - COG1091 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1861 - COG1091 - - - - - - - - - - - - COG0189 - - - - - - - - - - - - - - 0004782 - - - - - - - - - - - - - - 0047028 - - - - - - - - - - - - - - 0033814 - - - - - - - - - - - - - - - COG3980 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1862 - COG3980 - - - - - - - - - - - - 0004467 - - - - - - 0047747 - - - - - - - - - - - - - - 0008609 - - - - - - - - - - - - - - 0003857 - - - - - - 0033989 - - - - - - - - - - - - - - - COG1212 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1863 - COG1212 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0000249 - - - - - - - - - - - - - - - COG1861 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1864 - COG1861 - - - - - - - - - - - - 0047238 - - - - - - GT31 - - - - - - GT7 - - - - - - - - - - - - - - - - - - - - - - 0034004 - - - - - - - - - - - - - - 0003995 - - - - - - - - - - - - - - - COG2089 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1865 - COG2089 - - - - - - - - - - - - - - - - - - - - 0008780 - - - - - - COG1043 - - - - - - - - - - - - - - 0018695 - - - - - - - - - - - - - - - COG3563 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1866 - COG3563 - - - - - - - - - - - - 0018509 - - - - - - - - - - - - - - 0004582 - - - - - - COG0463 - - - - - - GT2 - - - - - - - - - - - - - - GT2 - - - - - - - - - - - - - - - COG2363 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1867 - COG2363 - - - - - - - - - - - - GT2 - - - - - - - - - - - - - - 0003975 - - - - - - COG0472 - - - - - - - - - - - - - - GT4 - - - - - - - - - - - - - - 0004578 - - - - - - GT33 - - - - - - - - - - - - - - - COG0692 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1868 - COG0692 - - - - - - - - - - - - GT29 - - - - - - - - - - - - - - GT29 - - - - - - - - - - - - - - GT29 - - - - - - - - - - - - - - - COG2261 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1869 - COG2261 - - - - - - - - - - - - 0001665 - - - - - - GT29 - - - - - - - - - - - - - - 0004577 - - - - - - GT1 - - - - - - - - - - - - - - 0004577 - - - - - - GT1 - - - - - - - - - - - - - - E - - - METABOLISM - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 187 - Amino acid transport and metabolism - E - - - - - - - - - - - - - COG4468 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1870 - COG4468 - - - - - - - - - - - - 0003828 - - - - - - GT29 - - - - - - - - - - - - - - 0003828 - - - - - - GT29 - - - - - - - - - - - - - - 0003947 - - - - - - GT12 - - - - - - - - - - - - - - 0047915 - - - - - - GT31 - - - - - - - - - - - - - - - COG2837 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1871 - COG2837 - - - - - - - - - - - - 0003836 - - - - - - GT29 - - - - - - - - - - - - - - 0003836 - - - - - - GT29 - - - - - - - - - - - - - - 0008107 - - - - - - GT11 - - - - - - - - - - - - - - - COG0672 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1872 - COG0672 - - - - - - - - - - - - 0047291 - - - - - - GT29 - - - - - - - - - - - - - - 0047277 - - - - - - GT6 - - - - - - - - - - - - - - 0008499 - - - - - - GT31 - - - - - - - - - - - - - - - COG0063 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1873 - COG0063 - - - - - - - - - - - - 0008499 - - - - - - GT31 - - - - - - - - - - - - - - 0008499 - - - - - - GT31 - - - - - - - - - - - - - - 0004380 - - - - - - 0004381 - - - - - - GT6 - - - - - - - - - - - - - - 0050512 - - - - - - GT32 - - - - - - - - - - - - - - - COG2145 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1874 - COG2145 - - - - - - - - - - - - 0047273 - - - - - - GT31 - - - - - - - - - - - - - - 0047787 - - - - - - - - - - - - - - 0047044 - - - - - - - - - - - - - - - COG4895 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1875 - COG4895 - - - - - - - - - - - - 0017060 - - - - - - GT10 - - - - - - - - - - - - - - 0017083 - - - - - - GT10 - - - - - - - - - - - - - - 0046920 - - - - - - GT10 - - - - - - - - - - - - - - - COG1442 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1876 - COG1442 - - - - - - - - - - - - 0046920 - - - - - - GT10 - - - - - - - - - - - - - - 0046920 - - - - - - GT10 - - - - - - - - - - - - - - 0004513 - - - - - - GT29 - - - - - - - - - - - - - - 0008532 - - - - - - GT31 - - - - - - GT49 - - - - - - - - - - - - - - - COG5522 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1877 - COG5522 - - - - - - - - - - - - 0008378 - - - - - - GT31 - - - - - - - - - - - - - - 0008378 - - - - - - GT31 - - - - - - - - - - - - - - 0003831 - - - - - - GT7 - - - - - - - - - - - - - - - COG2234 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1878 - COG2234 - - - - - - - - - - - - 0003831 - - - - - - GT7 - - - - - - - - - - - - - - GT7 - - - - - - - - - - - - - - GT7 - - - - - - - - - - - - - - - COG2357 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1879 - COG2357 - - - - - - - - - - - - 0008109 - - - - - - GT14 - - - - - - - - - - - - - - 0008412 - - - - - - COG0382 - - - - - - - - - - - - - - 0008689 - - - - - - COG2227 - - - - - - - - - - - - - - 0004395 - - - - - - COG2227 - - - - - - - - - - - - - - - COG0069 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 188 - COG0069 - - - - - - - - - - - - - COG0382 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1880 - COG0382 - - - - - - - - - - - - COG0654 - - - - - - - - - - - - - - COG2941 - - - - - - - - - - - - - - 0008681 - - - - - - COG0654 - - - - - - - - - - - - - - - COG1575 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1881 - COG1575 - - - - - - - - - - - - COG0654 - - - - - - - - - - - - - - COG0661 - - - - - - - - - - - - - - 0008694 - - - - - - COG0043 - - - - - - - - - - - - - - - COG1696 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1882 - COG1696 - - - - - - - - - - - - COG2913 - - - - - - - - - - - - - - 0008118 - - - - - - GT29 - - - - - - - - - - - - - - 0003836 - - - - - - GT29 - - - - - - - - - - - - - - 0047256 - - - - - - GT31 - - - - - - - - - - - - - - - COG3966 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1883 - COG3966 - - - - - - - - - - - - 0004307 - - - - - - - - - - - - - - COG1524 - - - - - - - - - - - - - - GT22 - - - - - - - - - - - - - - - COG2273 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1884 - COG2273 - - - - - - - - - - - - 0000030 - - - - - - GT76 - - - - - - - - - - - - - - COG1524 - - - - - - - - - - - - - - 0000030 - - - - - - GT50 - - - - - - - - - - - - - - - COG2094 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1885 - COG2094 - - - - - - - - - - - - - - - - - - - - COG5062 - - - - - - - - - - - - - - 0000225 - - - - - - - - - - - - - - 0017176 - - - - - - GT4 - - - - - - - - - - - - - - - COG1457 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1886 - COG1457 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG4988 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1887 - COG4988 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - COG1881 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1888 - COG1881 - - - - - - - - - - - - 0003827 - - - - - - GT13 - - - - - - - - - - - - - - 0004572 - - - - - - - - - - - - - - 0004571 - - - - - - GH47 - - - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - - COG2195 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1889 - COG2195 - - - - - - - - - - - - 0004579 - - - - - - 0008250 - - - - - - COG1287 - - - - - - GT66 - - - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - M - - - CELLULAR PROCESSES AND SIGNALING - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 189 - Cell wall/membrane/envelope biogenesis - M - - - - - - - - - - - - - COG4894 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1890 - COG4894 - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - - COG3209 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1891 - COG3209 - - - - - - - - - - - - 0008250 - - - - - - - - - - - - - - 0004573 - - - - - - - - - - - - - - GT57 - - - - - - - - - - - - - - GT59 - - - - - - - - - - - - - - - - COG5295 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1892 - COG5295 - - - - - - - - - - - - 0004584 - - - - - - GT22 - - - - - - - - - - - - - - GT57 - - - - - - - - - - - - - - 0008455 - - - - - - GT16 - - - - - - - - - - - - - - W - - - CELLULAR PROCESSES AND SIGNALING - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1893 - Extracellular structures - W - - - - - - - - - - - - 0004653 - - - - - - GT27 - - - - - - - - - - - - - - 0016262 - - - - - - GT41 - - - - - - - - - - - - - - 0001665 - - - - - - GT29 - - - - - - - - - - - - - - - COG2986 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1894 - COG2986 - - - - - - - - - - - - 0016263 - - - - - - GT31 - - - - - - - - - - - - - - GT31 - - - - - - - - - - - - - - 0003829 - - - - - - GT14 - - - - - - - - - - - - - - 0008109 - - - - - - GT14 - - - - - - - - - - - - - - - COG2987 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1895 - COG2987 - - - - - - - - - - - - GT14 - - - - - - - - - - - - - - 0047225 - - - - - - - - - - - - - - 0000009 - - - - - - COG3774 - - - - - - GT32 - - - - - - - - - - - - - - - COG0213 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1896 - COG0213 - - - - - - - - - - - - 0003830 - - - - - - GT17 - - - - - - - - - - - - - - 0008454 - - - - - - GT54 - - - - - - - - - - - - - - 0030144 - - - - - - GT18 - - - - - - - - - - - - - - - COG0274 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1897 - COG0274 - - - - - - - - - - - - GT18 - - - - - - - - - - - - - - 0008424 - - - - - - GT23 - - - - - - - - - - - - - - 0003831 - - - - - - GT7 - - - - - - - - - - - - - - 0003835 - - - - - - GT29 - - - - - - - - - - - - - - - COG3192 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1898 - COG3192 - - - - - - - - - - - - 0050508 - - - - - - GT47 - - - - - - GT64 - - - - - - - - - - - - - - GT47 - - - - - - GT64 - - - - - - - - - - - - - - 0016410 - - - - - - COG1044 - - - - - - - - - - - - - - - COG3049 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1899 - COG3049 - - - - - - - - - - - - 0008758 - - - - - - COG2908 - - - - - - - - - - - - - - 0008759 - - - - - - COG0774 - - - - - - - - - - - - - - 0047220 - - - - - - GT31 - - - - - - - - - - - - - - - COG1686 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 190 - COG1686 - - - - - - - - - - - - - COG3962 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1900 - COG3962 - - - - - - - - - - - - 0046525 - - - - - - GT7 - - - - - - - - - - - - - - 0015018 - - - - - - GT43 - - - - - - - - - - - - - - 0015018 - - - - - - GT43 - - - - - - - - - - - - - - 0015018 - - - - - - GT43 - - - - - - - - - - - - - - - COG3718 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1901 - COG3718 - - - - - - - - - - - - 0015018 - - - - - - GT43 - - - - - - - - - - - - - - 0030158 - - - - - - GT14 - - - - - - - - - - - - - - 0047224 - - - - - - GT31 - - - - - - - - - - - - - - - COG0326 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1902 - COG0326 - - - - - - - - - - - - 0047237 - - - - - - GT7 - - - - - - - - - - - - - - 0050510 - - - - - - GT31 - - - - - - GT7 - - - - - - - - - - - - - - 0050508 - - - - - - 0050509 - - - - - - GT47 - - - - - - GT64 - - - - - - - - - - - - - - - COG2850 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1903 - COG2850 - - - - - - - - - - - - 0050508 - - - - - - 0050509 - - - - - - GT47 - - - - - - GT64 - - - - - - - - - - - - - - 0016740 - - - - - - COG1519 - - - - - - GT30 - - - - - - - - - - - - - - 0008915 - - - - - - COG0763 - - - - - - GT19 - - - - - - - - - - - - - - 0008968 - - - - - - COG0279 - - - - - - - - - - - - - - - COG1520 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1904 - COG1520 - - - - - - - - - - - - COG2870 - - - - - - - - - - - - - - 0009029 - - - - - - COG1663 - - - - - - - - - - - - - - 0019143 - - - - - - COG1778 - - - - - - - - - - - - - - - COG1929 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1905 - COG1929 - - - - - - - - - - - - 0008690 - - - - - - COG1212 - - - - - - - - - - - - - - 0008676 - - - - - - COG2877 - - - - - - - - - - - - - - 0008415 - - - - - - COG1560 - - - - - - - - - - - - - - - COG1802 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1906 - COG1802 - - - - - - - - - - - - 0008415 - - - - - - COG1560 - - - - - - - - - - - - - - 0008712 - - - - - - COG0451 - - - - - - - - - - - - - - 0016788 - - - - - - COG0241 - - - - - - - - - - - - - - 0047750 - - - - - - - - - - - - - - - COG3855 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1907 - COG3855 - - - - - - - - - - - - 0016871 - - - - - - - - - - - - - - Q84PP7 - - - - - - Q9AVJ9 - - - - - - - - - - - - - - 0047016 - - - - - - - - - - - - - - - COG5293 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1908 - COG5293 - - - - - - - - - - - - 0003838 - - - - - - COG0500 - - - - - - - - - - - - - - 0047749 - - - - - - - - - - - - - - 0030750 - - - - - - Q42963 - - - - - - Q9SEH4 - - - - - - Q9SEH5 - - - - - - Q9SEH7 - - - - - - - - - - - - - - - COG1576 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1909 - COG1576 - - - - - - - - - - - - 0050614 - - - - - - - - - - - - - - 0047598 - - - - - - - - - - - - - - 0050046 - - - - - - - - - - - - - - 0004498 - - - - - - - - - - - - - - - COG2022 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 191 - COG2022 - - - - - - - - - - - - - COG4853 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1910 - COG4853 - - - - - - - - - - - - 0008974 - - - - - - COG0572 - - - - - - - - - - - - - - - - - - - - - - 0047793 - - - - - - - - - - - - - - - COG4863 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1911 - COG4863 - - - - - - - - - - - - - - - - - - - - 0050278 - - - - - - - - - - - - - - 0042132 - - - - - - 0050278 - - - - - - COG1494 - - - - - - - - - - - - - - - COG0104 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1912 - COG0104 - - - - - - - - - - - - 0045302 - - - - - - COG3049 - - - - - - - - - - - - - - 0008386 - - - - - - - - - - - - - - 0008111 - - - - - - COG1804 - - - - - - - - - - - - - - 0033791 - - - - - - - - - - - - - - - COG2931 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1913 - COG2931 - - - - - - - - - - - - 0008397 - - - - - - - - - - - - - - 0004508 - - - - - - - - - - - - - - 0004507 - - - - - - 0047783 - - - - - - - - - - - - - - - COG0359 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1914 - COG0359 - - - - - - - - - - - - 0004509 - - - - - - - - - - - - - - 0004507 - - - - - - - - - - - - - - 0003834 - - - - - - - - - - - - - - - COG3887 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1915 - COG3887 - - - - - - - - - - - - 0033759 - - - - - - Q7XZQ8 - - - - - - - - - - - - - - 0004584 - - - - - - GT58 - - - - - - - - - - - - - - 0004584 - - - - - - GT22 - - - - - - - - - - - - - - 0004732 - - - - - - - - - - - - - - - COG1227 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1916 - COG1227 - - - - - - - - - - - - 0047998 - - - - - - P24397 - - - - - - - - - - - - - - 0004633 - - - - - - - - - - - - - - 0050358 - - - - - - P50163 - - - - - - P50164 - - - - - - - - - - - - - - - COG2315 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1917 - COG2315 - - - - - - - - - - - - 0050356 - - - - - - COG1028 - - - - - - - - - - - - - - 0050468 - - - - - - P30986 - - - - - - P93479 - - - - - - - - - - - - - - - - - - - - - - - COG1331 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1918 - COG1331 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0016621 - - - - - - - - - - - - - - - COG0708 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1919 - COG0708 - - - - - - - - - - - - 0018765 - - - - - - - - - - - - - - 0047213 - - - - - - GT1 - - - - - - - - - - - - - - 0047230 - - - - - - GT1 - - - - - - - - - - - - - - - COG0214 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 192 - COG0214 - - - - - - - - - - - - - COG0238 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1920 - COG0238 - - - - - - - - - - - - GT1 - - - - - - - - - - - - - - 0016711 - - - - - - - - - - - - - - 0045551 - - - - - - - - - - - - - - - COG0360 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1921 - COG0360 - - - - - - - - - - - - 0045430 - - - - - - - - - - - - - - 0045552 - - - - - - COG0451 - - - - - - - - - - - - - - 0045486 - - - - - - - - - - - - - - 0045432 - - - - - - - - - - - - - - - COG4481 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1922 - COG4481 - - - - - - - - - - - - 0045431 - - - - - - - - - - - - - - - - - - - - - - 0042409 - - - - - - - - - - - - - - - COG3949 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1923 - COG3949 - - - - - - - - - - - - - - - - - - - - 2.7.7.7 - - - - - - - - - - - - - - 1.1.1.205 - - - - - - - - - - - - - - 4.-.-.- - - - - - - - - - - - - - - 2.6.-.- - - - - - - - - - - - - - - - COG1475 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1924 - COG1475 - - - - - - - - - - - - 6.1.1.11 - - - - - - - - - - - - - - 2.7.4.9 - - - - - - - - - - - - - - 6.1.1.10 - - - - - - - - - - - - - - - COG0357 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1925 - COG0357 - - - - - - - - - - - - 2.7.7.23 - - - - - - - - - - - - - - 2.3.1.157 - - - - - - - - - - - - - - 2.7.6.1 - - - - - - - - - - - - - - 2.4.2.8 - - - - - - - - - - - - - - 2.7.1.33 - - - - - - - - - - - - - - 2.5.1.47 - - - - - - - - - - - - - - - COG0445 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1926 - COG0445 - - - - - - - - - - - - 2.6.1.85 - - - - - - - - - - - - - - 4.1.3.27 - - - - - - - - - - - - - - 4.1.3.38 - - - - - - - - - - - - - - 2.5.1.15 - - - - - - - - - - - - - - 4.1.2.25 - - - - - - - - - - - - - - - COG0486 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1927 - COG0486 - - - - - - - - - - - - 6.1.1.6 - - - - - - - - - - - - - - 6.1.1.24 - - - - - - - - - - - - - - 2.3.1.30 - - - - - - - - - - - - - - - COG1163 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1928 - COG1163 - - - - - - - - - - - - 6.1.1.16 - - - - - - - - - - - - - - 2.7.7.6 - - - - - - - - - - - - - - 2.7.4.3 - - - - - - - - - - - - - - 3.2.1.52 - - - - - - - - - - - - - - - COG1847 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1929 - COG1847 - - - - - - - - - - - - 2.7.1.69 - - - - - - - - - - - - - - 4.2.-.- - - - - - - - - - - - - - - 5.4.2.10 - - - - - - - - - - - - - - 3.5.2.6 - - - - - - - - - - - - - - - COG0518 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 193 - COG0518 - - - - - - - - - - - - - COG0594 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1930 - COG0594 - - - - - - - - - - - - 1.14.-.- - - - - - - - - - - - - - - 3.1.4.46 - - - - - - - - - - - - - - 2.1.2.2 - - - - - - - - - - - - - - 2.7.8.8 - - - - - - - - - - - - - - 4.1.1.65 - - - - - - - - - - - - - - - COG0230 - - - http://www.bacillondex.org/cv/COG - http://www.bacillondex.org/evidenceType/IMPD - 1931 - COG0230 - - - - - - - - - - - - 3.5.99.6 - - - - - - - - - - - - - - 2.6.1.42 - - - - - - - - - - - - - - 2.1.1.10 - - - - - - - - - - - - - - 3.5.1.2 - - - - - - - - - - - - - - 4.2.1.41 - - - - - - - - - - - - - - 1.2.1.3 - - - - - - - - - - - - - - 4.2.1.40 - - - - - - - - - - - - - - 4.2.1.42 - - - - - - - - - - - - - - 3.5.1.1 - - - - - - - - - - - - - - 3.1.1.3 - - - - - - - - - - - - - - 1.1.1.47 - - - - - - - - - - - - - - 3.2.1.10 - - - - - - - - - - - - - - 3.2.1.1 - - - - - - - - - - - - - - 1.1.1.27 - - - - - - - - - - - - - - 6.3.1.5 - - - - - - - - - - - - - - 2.7.1.71 - - - - - - - - - - - - - - 3.1.1.41 - - - - - - - - - - - - - - 1.5.1.12 - - - - - - - - - - - - - - 1.8.1.9 - - - - - - - - - - - - - - 2.1.1.107 - - - - - 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- - - - - - - - - - - - - - 10135 - - - - - - - - - - - - - - - - - - - - 10136 - - - - - - - - - - - - - - - 10137 - - - - - - - - - - - 10138 - - - - - - - - - - - - - 10139 - - - - - - - - - - 10140 - - - - - - - - - - - - - 10141 - - - - - - - - - - - - - - - 10142 - - - - - - - - - - - 10143 - - - - - - - - - - - - - 10144 - - - - - - - - - - - 10145 - - - - - - - - - - 10146 - - - - - - - - - - 10147 - - - - - - - - - - - 10148 - - - - - - - - - - - 10149 - - - - - - - - - - - 10150 - - - - - - - - - - - - - 10151 - - - - - - - - - - - - - - - - 10152 - - - - - - - - - - - - - 10153 - - - - - - - - - - - - - 10154 - - - - - - - - - - - 10155 - - - - - - - - - - - - - - 10156 - - - - - - - - - - - - - 10157 - - - - - - - - - - - - - 10158 - - - - - - - - - - - - - - - - 10159 - - - - - - - - - - - - - - - - 10160 - - - - - - - - - - - - - - - - 10161 - - - - - - - - - - - - - - - - 10162 - - - - - - - - - - - - - - 10163 - - - - - - - - - - - - - - - 10164 - - - - - - - - - - - 10165 - - - - - - - - - - - 10166 - - - - - - - - - - - - - 10167 - - - - - - - - - - - - - - 10168 - - - - - - - - - - - - - 10169 - - - - - - - - - - - - - 10170 - - - - - - - - - - - - 10171 - - - - - - - - - - - - - 10172 - - - - - - - - - - - - - 10173 - - - - - - - - - - - - - 10174 - - - - - - - - - - - - - 10175 - - - - - - - - - - - - - 10176 - - - - - - - - - - - - 10177 - - - - - - - - - - - - - - 10178 - - - - - - - - - - - - - 10179 - - - - - - - - - - - - - 10180 - - - - - - - - - - - - - 10181 - - - - - - - - - - - - - - - - - 10182 - - - - - - - - - - - - - 10183 - - - - - - - - - - - - - 10184 - - - - - - - - - - - - 10185 - - - - - - - - - - - - - 10186 - - - - - - - - - - - - - - 10187 - - - - - - - - - - - - - 10188 - - - - - - - - - - - - - - 10189 - - - - - - - - - - - - - - - - - - - - - - - - - 10190 - - - - - - - - - - - - - - - - 10191 - - - - - - - - - - - - 10192 - - - - - - - - - - - - - - - - 10193 - - - - - - - - - - - - - - 10194 - - - - - - - - - - - - - - - - 10195 - 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- - - - - - - 10775 - - - - - - - - - - - - - - - - - 10776 - - - - - - - - - - - 10777 - - - - - - - - - - - - 10778 - - - - - - - - - - - - - 10779 - - - - - - - - - - - - - 10780 - - - - - - - - - - - - - 10781 - - - - - - - - - - - - - 10782 - - - - - - - - - - - - - - - - 10783 - - - - - - - - - - - - - 10784 - - - - - - - - - - - - - 10785 - - - - - - - - - - - - - 10786 - - - - - - - - - - - - - - - 10787 - - - - - - - - - - - - - 10788 - - - - - - - - - - - - - 10789 - - - - - - - - - - - 10790 - - - - - - - - - - - - - - 10791 - - - - - - - - - - - - 10792 - - - - - - - - - - - - - 10793 - - - - - - - - - - - - - 10794 - - - - - - - - - - - - - - 10795 - - - - - - - - - - - - 10796 - - - - - - - - - - - - - 10797 - - - - - - - - - - - - - 10798 - - - - - - - - - - - - - - - - 10799 - - - - - - - - - - 108 - - - - - - - - - - - 10800 - - - - - - - - - - - - - - - 10801 - - - - - - - - - - - - - 10802 - - - - - - - - - - - - 10803 - - - - - - - - - - - 10804 - - - - - - - - - - - - 10805 - - - - - - - - - - - - - 10806 - - - - - - - - - - - - - 10807 - - - - - - - - - - - - - 10808 - - - - - - - - - - - 10809 - - - - - - - - - - - - - 10810 - - - - - - - - - - - - - 10811 - - - - - - - - - - - - - - 10812 - - - - - - - - - - - - - - 10813 - - - - - - - - - - - - - 10814 - - - - - - - - - - - - - 10815 - - - - - - - - - - 10816 - - - - - - - - - - - - - - - - - 10817 - - - - - - - - - - - - - - - 10818 - - - - - - - - - - - - - 10819 - - - - - - - - - - - - - 10820 - - - - - - - - - - - - - - 10821 - - - - - - - - - - - - - - 10822 - - - - - - - - - - - - 10823 - - - - - - - - - - - - - - - - - 10824 - - - - - - - - - - - - - 10825 - - - - - - - - - - - - 10826 - - - - - - - - - - - - - - - - - 10827 - - - - - - - - - - - - - - - 10828 - - - - - - - - - - - - - 10829 - - - - - - - - - - - - - 10830 - - - - - - - - - - - - - 10831 - - - - - - - - - - - - - - 10832 - - - - - - - - - - - - - - 10833 - - - - - - - - - - - - - - 10834 - - - - - - - - - - - - - - 10835 - - - - - - - - - - - - - - - 10836 - - - - - - - - - - - - - 10837 - - - - - - - - - - - - - - 10838 - - - - - - - - - - - - - 10839 - - - - - - - - - - - - - - - - - - - 10840 - - - - - - - - - - - - - - 10841 - - - - - - - - - - - - - - 10842 - - - - - - - - - - - - - 10843 - - - - - - - - - - - - 10844 - - - - - - - - - - - - - - - 10845 - - - - - - - - - - - - - - 10846 - - - - - - - - - - - - - - 10847 - - - - - - - - - - - - - - - 10848 - - - - - - - - - - - - - - 10849 - - - - - - - - - - - - - 10850 - - - - - - - - - - - - - - - 10851 - - - - - - - - - - - - - - 10852 - - - - - - - - - - - - 10853 - - - - - - - - - - - - - - 10854 - - - - - - - - - - - - - 10855 - - - - - - - - - - - - - 10856 - - - - - - - - - - - - - 10857 - - - - - - - - - - - - 10858 - - - - - - - - - - - - - 10859 - - - - - - - - - - - - - - 10860 - - - - - - - - - - - - - - - - - 10861 - - - - - - - - - - - - - 10862 - - - - - - - - - - - - - - - - 10863 - - - - - - - - - - - - - - 10864 - - - - - - - - - - - - - - 10865 - - - - - - - - - - - - - 10866 - - - - - - - - - - - - - - 10867 - - - - - - - - - - - - - - 10868 - - - - - - - - - - - - - - - 10869 - - - - - - - - - - - - 10870 - - - - - - - - - - - - - 10871 - - - - - - - - - - - - - - 10872 - - - - - - - - - - - - 10873 - - - - - - - - - - - - - - 10874 - - - - - - - - - - - - - 10875 - - - - - - - - - - - - - - - 10876 - - - - - - - - - - - - - 10877 - - - - - - - - - - - - - 10878 - - - - - - - - - - - - 10879 - - - - - - - - - - - - - - - - - 10880 - - - - - - - - - - - - - - - 10881 - - - - - - - - - - - - - - - - 10882 - - - - - - - - - - - - - - 10883 - - - - - - - - - - - - - - 10884 - - - - - - - - - - - - - - 10885 - - - - - - - - - - - - - 10886 - - - - - - - - - - - - - 10887 - - - - - - - - - - - - 10888 - - - - - - - - - - - - - - - - - - - 10889 - - - - - - - - - - - - - - 10890 - - - - - - - - - - - - - - - 10891 - - - - - - - - - - - - - - 10892 - - - - - - - - - - - - - - - - - - - 10893 - - - - - - - - - - - - - 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- - - - - - - - - - 10923 - - - - - - - - - - - - - - - - 10924 - - - - - - - - - - - - - - - - - 10925 - - - - - - - - - - - - - - - - - 10926 - - - - - - - - - - - - - - - - - - - - - - - - 10927 - - - - - - - - - - - - - - - - - - - - 10928 - - - - - - - - - - - - - - - - - - - - 10929 - - - - - - - - - - - - - - - - - - - - - - 10930 - - - - - - - - - - - - - - - - - - 10931 - - - - - - - - - - - - - - - - - 10932 - - - - - - - - - - - - - - - - 10933 - - - - - - - - - - - - 10934 - - - - - - - - - - - - - - 10935 - - - - - - - - - - - - 10936 - - - - - - - - - - - - - 10937 - - - - - - - - - - - - - - - 10938 - - - - - - - - - - - - - 10939 - - - - - - - - - - - - - - 10940 - - - - - - - - - - - - - - - - 10941 - - - - - - - - - - - - - - - - - - - - 10942 - - - - - - - - - - - - - 10943 - - - - - - - - - - - - - - - - - - 10944 - - - - - - - - - - - - - 10945 - - - - - - - - - - - - 10946 - - - - - - - - - - - - - - 10947 - - - - - - - - - - - - - - 10948 - - - - - - - - - - - - - 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- - - - - 10976 - - - - - - - - - - - - - - - - - - - - 10977 - - - - - - - - - - - - - - - 10978 - - - - - - - - - - - - - - - - 10979 - - - - - - - - - - - - - 10980 - - - - - - - - - - - - - - - - - - - - - 10981 - - - - - - - - - - - - - - - - - - - - - - - 10982 - - - - - - - - - - - - - - - - - - - - - - 10983 - - - - - - - - - - - - - - - - - - - 10984 - - - - - - - - - - - - - - - - - - - - - - - - 10985 - - - - - - - - - - - - - - - - - - - 10986 - - - - - - - - - - - - - - 10987 - - - - - - - - - - - - - - - - - - - - - - - - - - - 10988 - - - - - - - - - - - - - - - - - - - - - - - - - 10989 - - - - - - - - - - - - - - - - - - - - - - - - - 10990 - - - - - - - - - - - - - - - - - - - - - 10991 - - - - - - - - - - - - 10992 - - - - - - - - - - - - - - - - - 10993 - - - - - - - - - - - - - - - - - 10994 - - - - - - - - - - - - - - - - 10995 - - - - - - - - - - - 10996 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 10997 - - - - - - - - - - - - - - - - - - - - - - - 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- - - - - 31564 - - - - - - - - - - - - - 31565 - - - - - - - - - - - - - 31566 - - - - - - - - - - - - 31567 - - - - - - - - - - - - - 31568 - - - - - - - - - - - - - 31569 - - - - - - - - - - - 3157 - - - - - - - - - - - - - 31570 - - - - - - - - - - - - - 31571 - - - - - - - - - - - - - 31572 - - - - - - - - - - - - - - - - 31573 - - - - - - - - - - - - - 31574 - - - - - - - - - - - - - - - - 31575 - - - - - - - - - - - - - 31576 - - - - - - - - - - - - 31577 - - - - - - - - - - - - - - 31578 - - - - - - - - - - - - 31579 - - - - - - - - - - - - 3158 - - - - - - - - - - - - - 31580 - - - - - - - - - - - - - - 31581 - - - - - - - - - - - - - 31582 - - - - - - - - - - - - - 31583 - - - - - - - - - - - - - 31584 - - - - - - - - - - - - - 31585 - - - - - - - - - - - - - 31586 - - - - - - - - - - - - - 31587 - - - - - - - - - - - - - - 31588 - - - - - - - - - - - - - 31589 - - - - - - - - - - - - 3159 - - - - - - - - - - - - - 31590 - - - - - - - - - - - - - - 31591 - - - - - - - - - - - - - 31592 - - - - - - - - - - - - - 31593 - - - - - - - - - - - - - 31594 - - - - - - - - - - - - - 31595 - - - - - - - - - - - - - - - - - - 31596 - - - - - - - - - - - - - - 31597 - - - - - - - - - - - - - 31598 - - - - - - - - - - - - 31599 - - - - - - - - - - - 3160 - - - - - - - - - - - - - 31600 - - - - - - - - - - - - - 31601 - - - - - - - - - - - - - - - - - 31602 - - - - - - - - - - - - - - 31603 - - - - - - - - - - - - - - 31604 - - - - - - - - - - - - - 31605 - - - - - - - - - - - - - 31606 - - - - - - - - - - - - - 31607 - - - - - - - - - - - - - - 31608 - - - - - - - - - - - - - 31609 - - - - - - - - - - - - 3161 - - - - - - - - - - - - - 31610 - - - - - - - - - - - - - - 31611 - - - - - - - - - - - - - 31612 - - - - - - - - - - - - - 31613 - - - - - - - - - - - - - 31614 - - - - - - - - - - - - - 31615 - - - - - - - - - - - - - - 31616 - - - - - - - - - - - - - 31617 - - - - - - - - - - - - - 31618 - - - - - - - - - - - - - 31619 - - - - - - - - - - - 3162 - - - - - - - - - - - - - 31620 - - - - - - - - - - - - - 31621 - - - - - - - - - - - - - 31622 - - - - - - - - - - - - - 31623 - - - - - - - - - - - - - 31624 - - - - - - - - - - - - - - - 31625 - - - - - - - - - - - - - 31626 - - - - - - - - - - - - - 31627 - - - - - - - - - - - - - 31628 - - - - - - - - - - - - - 31629 - - - - - - - - - - - - 3163 - - - - - - - - - - - - - 31630 - - - - - - - - - - - - - 31631 - - - - - - - - - - - - - 31632 - - - - - - - - - - - - 31633 - - - - - - - - - - - - - - - 31634 - - - - - - - - - - - - - - 31635 - - - - - - - - - - - - - 31636 - - - - - - - - - - - - - 31637 - - - - - - - - - - - - - 31638 - - - - - - - - - - - - - 31639 - - - - - - - - - - - 3164 - - - - - - - - - - - - - - - - 31640 - - - - - - - - - - - - 31641 - - - - - - - - - - - - - 31642 - - - - - - - - - - - - - 31643 - - - - - - - - - - - - - 31644 - - - - - - - - - - - - - 31645 - - - - - - - - - - - - - 31646 - - - - - - - - - - - - - 31647 - - - - - - - - - - - - - 31648 - - - - - - - - - - - - - 31649 - - - - - - - - - - - 3165 - - - - - - - - - - - - - 31650 - - - - - - - - - - - - - 31651 - - - - - - - - - - - - - 31652 - - - - - - - - - - - - - - - - - 31653 - - - - - - - - - - - - - 31654 - - - - - - - - - - - - - 31655 - - - - - - - - - - - - - 31656 - - - - - - - - - - - - - 31657 - - - - - - - - - - - - - - - - - 31658 - - - - - - - - - - - - - 31659 - - - - - - - - - - - 3166 - - - - - - - - - - - - - 31660 - - - - - - - - - - - - - - 31661 - - - - - - - - - - - - - 31662 - - - - - - - - - - - - - 31663 - - - - - - - - - - - - - 31664 - - - - - - - - - - - - - 31665 - - - - - - - - - - - - - 31666 - - - - - - - - - - - - - 31667 - - - - - - - - - - - - - 31668 - - - - - - - - - - - - - - 31669 - - - - - - - - - - - 3167 - - - - - - - - - - - - - 31670 - - - - - - - - - - - - - 31671 - - - - - - - - - - - - - 31672 - - - - - - - - - - - - - 31673 - - - - - - - - - - - - - 31674 - - - - - - - - - - - - - 31675 - - - - - - - - - - - - - 31676 - - - - - - - - - - - - - 31677 - - - - - - - - - - - - - 31678 - - - - - - - - - - - - - 31679 - - - - - - - - - - - 3168 - - - - - - - - - - - - - 31680 - - - - - - - - - - - - - 31681 - - - - - - - - - - - - - 31682 - - - - - - - - - - - - - 31683 - - - - - - - - - - - - - 31684 - - - - - - - - - - - - - - - - 31685 - - - - - - - - - - - - - 31686 - - - - - - - - - - - - - 31687 - - - - - - - - - - - - - 31688 - - - - - - - - - - - - 31689 - - - - - - - - - - - 3169 - - - - - - - - - - - - - 31690 - - - - - - - - - - - - - 31691 - - - - - - - - - - - - - 31692 - - - - - - - - - - - - - 31693 - - - - - - - - - - - - - 31694 - - - - - - - - - - - - - 31695 - - - - - - - - - - - - - 31696 - - - - - - - - - - - - - 31697 - - - - - - - - - - - - - 31698 - - - - - - - - - - - - - 31699 - - - - - - - - - - - 3170 - - - - - - - - - - - - - 31700 - - - - - - - - - - - - - - 31701 - - - - - - - - - - - - - 31702 - - - - - - - - - - - - - 31703 - - - - - - - - - - - - - 31704 - - - - - - - - - - - - - 31705 - - - - - - - - - - - - - 31706 - - - - - - - - - - - - - 31707 - - - - - - - - - - - - - 31708 - - - - - - - - - - 31709 - - - - - - - - - - - - 3171 - - - - - - - - - - - - - 31710 - - - - - - - - - - - - - - - - - 31711 - - - - - - - - - - - - - 31712 - - - - - - - - - - - - - 31713 - - - - - - - - - - - - - - 31714 - - - - - - - - - - - - - 31715 - - - - - - - - - - - - - - - - 31716 - - - - - - - - - - - - - - 31717 - - - - - - - - - - - - - 31718 - - - - - - - - - - - - - 31719 - - - - - - - - - - - - 3172 - - - - - - - - - - - - - - - 31720 - - - - - - - - - - - - - 31721 - - - - - - - - - - - - - 31722 - - - - - - - - - - - - - 31723 - - - - - - - - - - - - - 31724 - - - - - - - - - - - - - 31725 - - - - - - - - - - - - - - 31726 - - - - - - - - - - - - - 31727 - - - - - - - - - - - - - 31728 - - - - - - - - - - - - - 31729 - - - - - - - - - - - 3173 - - - - - - - - - - - - - - - 31730 - - - - - - - - - - - - - - 31731 - - - - - - - - - - - - - 31732 - - - - - - - - - - - - - 31733 - - - - - - - - - - - - - - - - - - 31734 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 31735 - - - - - - - - - - - - - 31736 - - - - - - - - - - - - - - - - - - - - - 31737 - - - - - - - - - - - - - 31738 - - - - - - - - - - - - - 31739 - - - - - - - - - - - 3174 - - - - - - - - - - - - - - - - - 31740 - - - - - - - - - - - - - 31741 - - - - - - - - - - - - - 31742 - - - - - - - - - - - - - 31743 - - - - - - - - - - - - - - - 31744 - - - - - - - - - - - - - 31745 - - - - - - - - - - - - - 31746 - - - - - - - - - - - - - - - - 31747 - - - - - - - - - - - - - 31748 - - - - - - - - - - - - - - 31749 - - - - - - - - - - - - 3175 - - - - - - - - - - - - - - - - - - - - - 31750 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 31751 - - - - - - - - - - - - - - - - 31752 - - - - - - - - - - - - - 31753 - - - - - - - - - - - - - 31754 - - - - - - - - - - - - - 31755 - - - - - - - - - - - - - - - 31756 - - - - - - - - - - - - - 31757 - - - - - - - - - - - - - 31758 - - - - - - - - - - - - - 31759 - - - - - - - - - - - - 3176 - - - - - - - - - - - - - 31760 - - - - - - - - - - - - - 31761 - - - - - - - - - - - - - 31762 - - - - - - - - - - - - - - - 31763 - - - - - - - - - - - - - 31764 - - - - - - - - - - - - - 31765 - - - - - - - - - - - - - - - - 31766 - - - - - - - - - - - - - - 31767 - - - - - - - - - - - - - 31768 - - - - - - - - - - - - - 31769 - - - - - - - - - - - - 3177 - - - - - - - - - - - - - 31770 - - - - - - - - - - - - - - - - - - - - - - - - - - 31771 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 31772 - - - - - - - - - - - - - - - - - - - - - - 31773 - - - - - - - - - - - - - - 31774 - - - - - - - - - - - - - - - - 31775 - - - - - - - - - - - - - 31776 - - - - - - - - - - - - - - - 31777 - - - - - - - - - - - - - - 31778 - - - - - - - - - - - - - - 31779 - - - - - - - - - - - 3178 - - - - - - - - - - - - - - 31780 - - - - - - - - - - - - - 31781 - - - - - - - - - - - - - 31782 - - - - - - - - - - - - - 31783 - - - - - - - - - - - - - 31784 - - - - - - - - - - - - - 31785 - - - - - - - - - - - - - 31786 - - - - - - - - - - - - - 31787 - - - - - - - - - - - - - 31788 - - - - - - - - - - - - - - 31789 - - - - - - - - - - - 3179 - - - - - - - - - - - - - 31790 - - - - - - - - - - - - - - 31791 - - - - - - - - - - - - - 31792 - - - - - - - - - - - - - - 31793 - - - - - - - - - - - - - - - 31794 - - - - - - - - - - - - - 31795 - - - - - - - - - - - - - 31796 - - - - - - - - - - - - - 31797 - - - - - - - - - - - - - 31798 - - - - - - - - - - - - - 31799 - - - - - - - - - - - 3180 - - - - - - - - - - - - - - - - - 31800 - - - - - - - - - - - - - - - - 31801 - - - - - - - - - - - - - 31802 - - - - - - - - - - - - - 31803 - - - - - - - - - - - - - - 31804 - - - - - - - - - - - - - - - 31805 - - - - - - - - - - - - - 31806 - - - - - - - - - - - - - 31807 - - - - - - - - - - - - - - - - - - - - 31808 - - - - - - - - - - - - - - - 31809 - - - - - - - - - - - 3181 - - - - - - - - - - - - - 31810 - - - - - - - - - - - - - 31811 - - - - - - - - - - - - - 31812 - - - - - - - - - - - - - - - - - - 31813 - - - - - - - - - - - - - 31814 - - - - - - - - - - - - - - 31815 - - - - - - - - - - - - - 31816 - - - - - - - - - - - - - - - - 31817 - - - - - - - - - - - - - 31818 - - - - - - - - - - - - - - - 31819 - - - - - - - - - - - 3182 - - - - - - - - - - - - - - - - - - 31820 - - - - - - - - - - - - - 31821 - - - - - - - - - - - - - 31822 - - - - - - - - - - - - - 31823 - - - - - - - - - - - - - 31824 - - - - - - - - - - - - - 31825 - - - - - - - - - - - - - 31826 - - - - - - - - - - - - - 31827 - - - - - - - - - - - - - 31828 - - - - - - - - - - - - - 31829 - - - - - - - - - - - 3183 - - - - - - - - - - - - - 31830 - - - - - - - - - - - - - 31831 - - - - - - - - - - - - 31832 - - - - - - - - - - - - 31833 - - - - - - - - - - - - - 31834 - - - - - - - - - - - - - 31835 - - - - - - - - - - - - - 31836 - - - - - - - - - - - - - 31837 - - - - - - - - - - - - - 31838 - - - - - - - - - - - - - 31839 - - - - - - - - - - - - 3184 - - - - - - - - - - - - 31840 - - - - - - - - - - - - - 31841 - - - - - - - - - - - - - 31842 - - - - - - - - - - - - - 31843 - - - - - - - - - - - - - 31844 - - - - - - - - - - - - - - 31845 - - - - - - - - - - - - - 31846 - - - - - - - - - - - - 31847 - - - - - - - - - - - - - 31848 - - - - - - - - - - - - 31849 - - - - - - - - - - - 3185 - - - - - - - - - - - - - 31850 - - - - - - - - - - - - - - - - - - 31851 - - - - - - - - - - - - - 31852 - - - - - - - - - - - - - - - 31853 - - - - - - - - - - - - - - - - - 31854 - - - - - - - - - - - - 31855 - - - - - - - - - - - - - 31856 - - - - - - - - - - - - - 31857 - - - - - - - - - - - - - 31858 - - - - - - - - - - - - - 31859 - - - - - - - - - - - 3186 - - - - - - - - - - - - - - 31860 - - - - - - - - - - - - - 31861 - - - - - - - - - - - - - - 31862 - - - - - - - - - - - - - 31863 - - - - - - - - - - - - - 31864 - - - - - - - - - - - - 31865 - - - - - - - - - - - - - - 31866 - - - - - - - - - - - - - 31867 - - - - - - - - - - - - - 31868 - - - - - - - - - - - - - 31869 - - - - - - - - - - - 3187 - - - - - - - - - - - - 31870 - - - - - - - - - - - - - 31871 - - - - - - - - - - - - - 31872 - - - - - - - - - - - - - 31873 - - - - - - - - - - - - - 31874 - - - - - - - - - - - - - - - 31875 - - - - - - - - - - - - - 31876 - - - - - - - - - - - - - 31877 - - - - - - - - - - - - - 31878 - - - - - - - - - - - - - 31879 - - - - - - - - - - - 3188 - - - - - - - - - - - - - 31880 - - - - - - - - - - - - - 31881 - - - - - - - - - - - - - 31882 - - - - - - - - - - - - - 31883 - - - - - - - - - - - - - 31884 - - - - - - - - - - - - - 31885 - - - - - - - - - - - - - 31886 - - - - - - - - - - - - - 31887 - - - - - - - - - - - - - 31888 - - - - - - - - - - - - - 31889 - - - - - - - - - - - 3189 - - - - - - - - - - - - - 31890 - - - - - - - - - - - - - 31891 - - - - - - - - - - - - - 31892 - - - - - - - - - - - - - 31893 - - - - - - - - - - - - - 31894 - - - - - - - - - - - - - 31895 - - - - - - - - - - - - - - - - 31896 - - - - - - - - - - - - - - 31897 - - - - - - - - - - - - - 31898 - - - - - - - - - - - - - 31899 - - - - - - - - - - - 3190 - - - - - - - - - - - - - 31900 - - - - - - - - - - - - - - - 31901 - - - - - - - - - - - - - 31902 - - - - - - - - - - - - - 31903 - - - - - - - - - - - - - 31904 - - - - - - - - - - - - - - 31905 - - - - - - - - - - - - - - 31906 - - - - - - - - - - - - - - 31907 - - - - - - - - - - - - - 31908 - - - - - - - - - - - - - 31909 - - - - - - - - - - - 3191 - - - - - - - - - - - - - 31910 - - - - - - - - - - - - - 31911 - - - - - - - - - - - - - 31912 - - - - - - - - - - - - - 31913 - - - - - - - - - - - - - 31914 - - - - - - - - - - - - - 31915 - - - - - - - - - - - - - 31916 - - - - - - - - - - - - - 31917 - - - - - - - - - - - - 31918 - - - - - - - - - - - - - - - - 31919 - - - - - - - - - - - - 3192 - - - - - - - - - - - - 31920 - - - - - - - - - - - - - 31921 - - - - - 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- - - - - - - - www.bacillondex.org#9860 - - - - - - - - - www.bacillondex.org#9861 - - - - - - - - - www.bacillondex.org#9862 - - - - - - - - - www.bacillondex.org#9863 - - - - - - - - - www.bacillondex.org#9864 - - - - - - - - - www.bacillondex.org#9865 - - - - - - - - - www.bacillondex.org#9866 - - - - - - - - - www.bacillondex.org#9867 - - - - - - - - - www.bacillondex.org#9868 - - - - - - - - - www.bacillondex.org#9869 - - - - - - - - - www.bacillondex.org#9870 - - - - - - - - - www.bacillondex.org#9871 - - - - - - - - - www.bacillondex.org#9872 - - - - - - - - - www.bacillondex.org#9873 - - - - - - - - - www.bacillondex.org#9874 - - - - - - - - - www.bacillondex.org#9875 - - - - - - - - - www.bacillondex.org#9876 - - - - - - - - - www.bacillondex.org#9877 - - - - - - - - - www.bacillondex.org#9878 - - - - - - - - - www.bacillondex.org#9880 - - - - - - - - - www.bacillondex.org#9881 - - - - - - - - - www.bacillondex.org#9882 - - - - - - - - - www.bacillondex.org#9883 - - - - - - - - - www.bacillondex.org#9884 - - - - - - - - - www.bacillondex.org#9885 - - - - - - - - - www.bacillondex.org#9886 - - - - - - - - - www.bacillondex.org#9887 - - - - - - - - - www.bacillondex.org#9888 - - - - - - - - - www.bacillondex.org#9889 - - - - - - - - - www.bacillondex.org#9890 - - - - - - - - - www.bacillondex.org#9892 - - - - - - - - - www.bacillondex.org#9893 - - - - - - - - - www.bacillondex.org#9894 - - - - - - - - - www.bacillondex.org#9897 - - - - - - - - - www.bacillondex.org#9898 - - - - - - - - - www.bacillondex.org#9899 - - - - - - - - - www.bacillondex.org#9900 - - - - - - - - - www.bacillondex.org#9901 - - - - - - - - - www.bacillondex.org#9902 - - - - - - - - - www.bacillondex.org#9903 - - - - - - - - - www.bacillondex.org#9904 - - - - - - - - - www.bacillondex.org#9905 - - - - - - - - - www.bacillondex.org#9907 - - - - - - - - - www.bacillondex.org#9910 - - - - - - - - - www.bacillondex.org#9911 - - - - - - - - - www.bacillondex.org#9912 - - - - - - - - - www.bacillondex.org#9913 - - - - - - - - - www.bacillondex.org#9914 - - - - - - - - - www.bacillondex.org#9915 - - - - - - - - - www.bacillondex.org#9916 - - - - - - - - - www.bacillondex.org#9918 - - - - - - - - - www.bacillondex.org#9919 - - - - - - - - - www.bacillondex.org#9920 - - - - - - - - - www.bacillondex.org#9921 - - - - - - - - - www.bacillondex.org#9922 - - - - - - - - - www.bacillondex.org#9923 - - - - - - - - - www.bacillondex.org#9924 - - - - - - - - - www.bacillondex.org#9925 - - - - - - - - - www.bacillondex.org#9926 - - - - - - - - - www.bacillondex.org#9928 - - - - - - - - - www.bacillondex.org#9929 - - - - - - - - - www.bacillondex.org#9931 - - - - - - - - - www.bacillondex.org#9932 - - - - - - - - - www.bacillondex.org#9934 - - - - - - - - - www.bacillondex.org#9935 - - - - - - - - - www.bacillondex.org#9936 - - - - - - - - - www.bacillondex.org#9937 - - - - - - - - - www.bacillondex.org#9938 - - - - - - - - - www.bacillondex.org#9939 - - - - - - - - - www.bacillondex.org#9940 - - - - - - - - - www.bacillondex.org#9941 - - - - - - - - - www.bacillondex.org#9943 - - - - - - - - - www.bacillondex.org#9944 - - - - - - - - - www.bacillondex.org#9945 - - - - - - - - - www.bacillondex.org#9947 - - - - - - - - - www.bacillondex.org#9950 - - - - - - - - - www.bacillondex.org#9951 - - - - - - - - - www.bacillondex.org#9952 - - - - - - - - - www.bacillondex.org#9953 - - - - - - - - - www.bacillondex.org#9954 - - - - - - - - - www.bacillondex.org#9955 - - - - - - - - - www.bacillondex.org#9957 - - - - - - - - - www.bacillondex.org#9958 - - - - - - - - - www.bacillondex.org#9959 - - - - - - - - - www.bacillondex.org#9960 - - - - - - - - - www.bacillondex.org#9961 - - - - - - - - - www.bacillondex.org#9962 - - - - - - - - - www.bacillondex.org#9963 - - - - - - - - - www.bacillondex.org#9964 - - - - - - - - - www.bacillondex.org#9965 - - - - - - - - - www.bacillondex.org#9966 - - - - - - - - - www.bacillondex.org#9967 - - - - - - - - - www.bacillondex.org#9968 - - - - - - - - - www.bacillondex.org#9969 - - - - - - - - - www.bacillondex.org#9970 - - - - - - - - - www.bacillondex.org#9971 - - - - - - - - - www.bacillondex.org#9972 - - - - - - - - - www.bacillondex.org#9973 - - - - - - - - - www.bacillondex.org#9974 - - - - - - - - - www.bacillondex.org#9975 - - - - - - - - - www.bacillondex.org#9976 - - - - - - - - - www.bacillondex.org#9977 - - - - - - - - - www.bacillondex.org#9978 - - - - - - - - - www.bacillondex.org#9979 - - - - - - - - - www.bacillondex.org#9980 - - - - - - - - - www.bacillondex.org#9981 - - - - - - - - - www.bacillondex.org#9982 - - - - - - - - - www.bacillondex.org#9983 - - - - - - - - - www.bacillondex.org#9984 - - - - - - - - - www.bacillondex.org#9985 - - - - - - - - - www.bacillondex.org#9986 - - - - - - - - - www.bacillondex.org#9987 - - - - - - - - - www.bacillondex.org#9989 - - - - - - - - - www.bacillondex.org#9990 - - - - - - - - - www.bacillondex.org#9991 - - - - - - - - - www.bacillondex.org#9992 - - - - - - - - - www.bacillondex.org#9994 - - - - - - - - - www.bacillondex.org#9995 - - - - - - - - - www.bacillondex.org#9996 - - - - - - - - - www.bacillondex.org#9997 - - - - - - - - - www.bacillondex.org#9999 - - - - - - - - 11546 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00010 - http://www.genome.jp/kegg/pathway/bsu/bsu00010.png - http://www.bacillondex.org/cv/KEGG - 224308 - Glycolysis / Gluconeogenesis - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00020 - 224308 - http://www.bacillondex.org/evidenceType/IMPD - Citrate cycle (TCA cycle) - http://www.genome.jp/kegg/pathway/bsu/bsu00020.png - 11549 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00030.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00030 - 11551 - Pentose phosphate pathway - - - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00040 - http://www.genome.jp/kegg/pathway/bsu/bsu00040.png - Pentose and glucuronate interconversions - http://www.bacillondex.org/evidenceType/IMPD - 11553 - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00051 - http://www.genome.jp/kegg/pathway/bsu/bsu00051.png - 11555 - http://www.bacillondex.org/cv/KEGG - Fructose and mannose metabolism - - - http://www.bacillondex.org/evidenceType/IMPD - 11557 - http://www.bacillondex.org/cv/KEGG - Galactose metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00052.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00052 - 224308 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00053 - Ascorbate and aldarate metabolism - 11559 - http://www.genome.jp/kegg/pathway/bsu/bsu00053.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00061 - Fatty acid biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - 11561 - http://www.genome.jp/kegg/pathway/bsu/bsu00061.png - - - http://www.bacillondex.org/cv/KEGG - 11563 - http://www.genome.jp/kegg/pathway/bsu/bsu00062.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00062 - Fatty acid elongation in mitochondria - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00071 - 11565 - Fatty acid metabolism - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00071.png - 224308 - http://www.bacillondex.org/cv/KEGG - - - Synthesis and degradation of ketone bodies - 11568 - http://www.genome.jp/kegg/pathway/bsu/bsu00072.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00072 - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00130 - http://www.bacillondex.org/cv/KEGG - Ubiquinone and other terpenoid-quinone biosynthesis - 11570 - http://www.genome.jp/kegg/pathway/bsu/bsu00130.png - - - Purine metabolism - 11574 - http://www.genome.jp/kegg/pathway/bsu/bsu00230.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00230 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg/pathway/bsu/bsu00232.png - Caffeine metabolism - http://www.genome.jp/kegg-bin/show_pathway?bsu00232 - 11576 - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg/pathway/bsu/bsu00240.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00240 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Pyrimidine metabolism - 11578 - 224308 - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - Alanine, aspartate and glutamate metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00250.png - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00250 - 11580 - - - 11584 - http://www.genome.jp/kegg/pathway/bsu/bsu00260.png - Glycine, serine and threonine metabolism - http://www.genome.jp/kegg-bin/show_pathway?bsu00260 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00270 - http://www.genome.jp/kegg/pathway/bsu/bsu00270.png - 11586 - Cysteine and methionine metabolism - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 11588 - http://www.genome.jp/kegg-bin/show_pathway?bsu00280 - Valine, leucine and isoleucine degradation - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00280.png - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.genome.jp/kegg/pathway/bsu/bsu00281.png - 11590 - http://www.genome.jp/kegg-bin/show_pathway?bsu00281 - Geraniol degradation - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00290.png - Valine, leucine and isoleucine biosynthesis - 11592 - http://www.genome.jp/kegg-bin/show_pathway?bsu00290 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00300 - 11594 - Lysine biosynthesis - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00300.png - 224308 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00310 - http://www.genome.jp/kegg/pathway/bsu/bsu00310.png - 224308 - Lysine degradation - 11597 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 11599 - http://www.bacillondex.org/cv/KEGG - Penicillin and cephalosporin biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00311 - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00311.png - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00330 - Arginine and proline metabolism - http://www.bacillondex.org/cv/KEGG - 11603 - http://www.genome.jp/kegg/pathway/bsu/bsu00330.png - - - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Histidine metabolism - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00340 - 11605 - http://www.genome.jp/kegg/pathway/bsu/bsu00340.png - - - http://www.bacillondex.org/cv/KEGG - 11607 - http://www.genome.jp/kegg/pathway/bsu/bsu00350.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Tyrosine metabolism - http://www.genome.jp/kegg-bin/show_pathway?bsu00350 - - - 11610 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00360 - Phenylalanine metabolism - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00360.png - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00361 - 224308 - gamma-Hexachlorocyclohexane degradation - http://www.genome.jp/kegg/pathway/bsu/bsu00361.png - 11612 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00362 - 224308 - Benzoate degradation via hydroxylation - http://www.genome.jp/kegg/pathway/bsu/bsu00362.png - http://www.bacillondex.org/evidenceType/IMPD - 11614 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 11618 - 224308 - Tryptophan metabolism - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00380.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00380 - - - Phenylalanine, tyrosine and tryptophan biosynthesis - 11620 - http://www.genome.jp/kegg-bin/show_pathway?bsu00400 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00400.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00401 - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Novobiocin biosynthesis - http://www.genome.jp/kegg/pathway/bsu/bsu00401.png - 11627 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00410 - beta-Alanine metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00410.png - 11629 - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 11631 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00430.png - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00430 - Taurine and hypotaurine metabolism - - - http://www.genome.jp/kegg/pathway/bsu/bsu00440.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00440 - http://www.bacillondex.org/cv/KEGG - Phosphonate and phosphinate metabolism - http://www.bacillondex.org/evidenceType/IMPD - 11633 - 224308 - - - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00450 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Selenoamino acid metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00450.png - 11635 - - - http://www.genome.jp/kegg/pathway/bsu/bsu00460.png - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 224308 - Cyanoamino acid metabolism - 11637 - http://www.genome.jp/kegg-bin/show_pathway?bsu00460 - - - http://www.bacillondex.org/evidenceType/IMPD - 11639 - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00471 - http://www.genome.jp/kegg/pathway/bsu/bsu00471.png - D-Glutamine and D-glutamate metabolism - - - 11642 - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00472 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - D-Arginine and D-ornithine metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00472.png - - - http://www.genome.jp/kegg/pathway/bsu/bsu00473.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00473 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11644 - D-Alanine metabolism - - - 11646 - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00480 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00480.png - Glutathione metabolism - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00500 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11648 - Starch and sucrose metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00500.png - - - http://www.genome.jp/kegg/pathway/bsu/bsu00520.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00520 - Amino sugar and nucleotide sugar metabolism - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11652 - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Streptomycin biosynthesis - 11654 - http://www.genome.jp/kegg/pathway/bsu/bsu00521.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00521 - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00523 - http://www.genome.jp/kegg/pathway/bsu/bsu00523.png - http://www.bacillondex.org/evidenceType/IMPD - Polyketide sugar unit biosynthesis - 224308 - 11656 - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00550.png - 11658 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00550 - Peptidoglycan biosynthesis - - - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00561.png - 11660 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Glycerolipid metabolism - http://www.genome.jp/kegg-bin/show_pathway?bsu00561 - - - http://www.genome.jp/kegg/pathway/bsu/bsu00562.png - 11662 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Inositol phosphate metabolism - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00562 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00564 - http://www.genome.jp/kegg/pathway/bsu/bsu00564.png - Glycerophospholipid metabolism - 224308 - http://www.bacillondex.org/cv/KEGG - 11664 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00590 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00590.png - 224308 - http://www.bacillondex.org/cv/KEGG - Arachidonic acid metabolism - 11667 - - - http://www.bacillondex.org/cv/KEGG - Sphingolipid metabolism - 224308 - http://www.bacillondex.org/evidenceType/IMPD - 11671 - http://www.genome.jp/kegg-bin/show_pathway?bsu00600 - http://www.genome.jp/kegg/pathway/bsu/bsu00600.png - - - Pyruvate metabolism - 11677 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00620.png - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00620 - - - 11679 - http://www.genome.jp/kegg-bin/show_pathway?bsu00624 - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00624.png - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1- and 2-Methylnaphthalene degradation - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00626 - http://www.genome.jp/kegg/pathway/bsu/bsu00626.png - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 11681 - 224308 - Naphthalene and anthracene degradation - - - http://www.bacillondex.org/cv/KEGG - Fluorene degradation - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00628.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00628 - 224308 - 11683 - - - http://www.bacillondex.org/cv/KEGG - 224308 - Glyoxylate and dicarboxylate metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00630.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00630 - http://www.bacillondex.org/evidenceType/IMPD - 11685 - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - 11687 - 1,2-Dichloroethane degradation - http://www.genome.jp/kegg-bin/show_pathway?bsu00631 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00631.png - - - http://www.bacillondex.org/evidenceType/IMPD - 11689 - Benzoate degradation via CoA ligation - http://www.genome.jp/kegg/pathway/bsu/bsu00632.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00632 - http://www.bacillondex.org/cv/KEGG - 224308 - - - Propanoate metabolism - http://www.genome.jp/kegg-bin/show_pathway?bsu00640 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00640.png - 224308 - http://www.bacillondex.org/cv/KEGG - 11693 - - - http://www.bacillondex.org/cv/KEGG - 3-Chloroacrylic acid degradation - http://www.genome.jp/kegg/pathway/bsu/bsu00641.png - 11695 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00641 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00650 - Butanoate metabolism - 11697 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg/pathway/bsu/bsu00650.png - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 11700 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00660.png - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00660 - C5-Branched dibasic acid metabolism - - - http://www.genome.jp/kegg/pathway/bsu/bsu00670.png - 11702 - One carbon pool by folate - http://www.genome.jp/kegg-bin/show_pathway?bsu00670 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - - - 11704 - http://www.genome.jp/kegg/pathway/bsu/bsu00680.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00680 - Methane metabolism - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00730.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00730 - 11706 - 224308 - http://www.bacillondex.org/evidenceType/IMPD - Thiamine metabolism - - - 224308 - 11710 - Riboflavin metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00740.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00740 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.genome.jp/kegg/pathway/bsu/bsu00750.png - http://www.bacillondex.org/cv/KEGG - 11712 - http://www.genome.jp/kegg-bin/show_pathway?bsu00750 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Vitamin B6 metabolism - - - 11714 - http://www.genome.jp/kegg-bin/show_pathway?bsu00760 - http://www.genome.jp/kegg/pathway/bsu/bsu00760.png - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Nicotinate and nicotinamide metabolism - 224308 - - - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00770 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Pantothenate and CoA biosynthesis - http://www.genome.jp/kegg/pathway/bsu/bsu00770.png - 11716 - - - http://www.bacillondex.org/cv/KEGG - 11718 - Biotin metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00780.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00780 - - - 11720 - http://www.genome.jp/kegg-bin/show_pathway?bsu00785 - Lipoic acid metabolism - http://www.genome.jp/kegg/pathway/bsu/bsu00785.png - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.bacillondex.org/evidenceType/IMPD - - - 224308 - Folate biosynthesis - http://www.genome.jp/kegg/pathway/bsu/bsu00790.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00790 - 11722 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00860.png - http://www.bacillondex.org/cv/KEGG - 11724 - http://www.genome.jp/kegg-bin/show_pathway?bsu00860 - 224308 - Porphyrin and chlorophyll metabolism - - - 11726 - Terpenoid backbone biosynthesis - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu00900 - http://www.genome.jp/kegg/pathway/bsu/bsu00900.png - - - http://www.bacillondex.org/cv/KEGG - Limonene and pinene degradation - http://www.genome.jp/kegg/pathway/bsu/bsu00903.png - http://www.genome.jp/kegg-bin/show_pathway?bsu00903 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11732 - - - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg/pathway/bsu/bsu00910.png - Nitrogen metabolism - 11734 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg-bin/show_pathway?bsu00910 - - - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.genome.jp/kegg-bin/show_pathway?bsu00920 - 11736 - http://www.bacillondex.org/cv/KEGG - http://www.genome.jp/kegg/pathway/bsu/bsu00920.png - Sulfur metabolism - - - http://www.genome.jp/kegg-bin/show_pathway?bsu00930 - http://www.bacillondex.org/cv/KEGG - 11739 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Caprolactam degradation - http://www.genome.jp/kegg/pathway/bsu/bsu00930.png - - - http://www.bacillondex.org/cv/KEGG - 11741 - http://www.genome.jp/kegg/pathway/bsu/bsu00970.png - 224308 - http://www.bacillondex.org/evidenceType/IMPD - Aminoacyl-tRNA biosynthesis - http://www.genome.jp/kegg-bin/show_pathway?bsu00970 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu01040 - http://www.bacillondex.org/cv/KEGG - Biosynthesis of unsaturated fatty acids - http://www.genome.jp/kegg/pathway/bsu/bsu01040.png - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11743 - - - Biosynthesis of siderophore group nonribosomal peptides - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.genome.jp/kegg-bin/show_pathway?bsu01053 - http://www.genome.jp/kegg/pathway/bsu/bsu01053.png - 11745 - - - http://www.genome.jp/kegg-bin/show_pathway?bsu01100 - http://www.genome.jp/kegg/pathway/bsu/bsu01100.png - Metabolic pathways - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 11749 - - - http://www.kegg.jp/dbget-bin/www_bget?map00710 - 224308 - Carbon fixation in photosynthetic organisms - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - Carbon fixation in photosynthetic organisms - 11783 - - - Aminosugars metabolism - Aminosugars metabolism - 224308 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?map00530 - 11785 - - - Tetracycline biosynthesis - Tetracycline biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?map00253 - http://www.bacillondex.org/cv/KEGG - 224308 - 11786 - - - Tropane, piperidine and pyridine alkaloid biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - Tropane, piperidine and pyridine alkaloid biosynthesis - http://www.bacillondex.org/cv/KEGG - 224308 - 11787 - http://www.kegg.jp/dbget-bin/www_bget?map00960 - - - http://www.kegg.jp/dbget-bin/www_bget?map00312 - http://www.bacillondex.org/cv/KEGG - beta-Lactam resistance - http://www.bacillondex.org/evidenceType/IMPD - beta-Lactam resistance - 224308 - 11788 - - - http://www.bacillondex.org/cv/KEGG - 11789 - Cephalosporins - parenteral agents - 224308 - http://www.bacillondex.org/evidenceType/IMPD - Cephalosporins - parenteral agents - http://www.kegg.jp/dbget-bin/www_bget?map07012 - - - Isoquinoline alkaloid biosynthesis - 11790 - http://www.kegg.jp/dbget-bin/www_bget?map00950 - Isoquinoline alkaloid biosynthesis - http://www.bacillondex.org/cv/KEGG - 224308 - http://www.bacillondex.org/evidenceType/IMPD - - - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00622 - Toluene and xylene degradation - http://www.bacillondex.org/evidenceType/IMPD - 11792 - http://www.bacillondex.org/cv/KEGG - Toluene and xylene degradation - - - Phenylpropanoid biosynthesis - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11793 - Phenylpropanoid biosynthesis - http://www.kegg.jp/dbget-bin/www_bget?map00940 - - - Benzoxazinone biosynthesis - 11794 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?map00402 - 224308 - Benzoxazinone biosynthesis - - - 224308 - 11795 - Indole alkaloid biosynthesis - http://www.kegg.jp/dbget-bin/www_bget?map00901 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - Indole alkaloid biosynthesis - - - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Acridone alkaloid biosynthesis - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?map01058 - 11796 - Acridone alkaloid biosynthesis - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?map00231 - 224308 - 11797 - http://www.bacillondex.org/cv/KEGG - Puromycin biosynthesis - Puromycin biosynthesis - - - Glutamate metabolism - http://www.bacillondex.org/evidenceType/IMPD - 224308 - 11798 - Glutamate metabolism - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?map00251 - - - Glycosphingolipid biosynthesis - lacto and neolacto series - http://www.bacillondex.org/cv/KEGG - 224308 - 11802 - http://www.bacillondex.org/evidenceType/IMPD - Glycosphingolipid biosynthesis - lacto and neolacto series - http://www.kegg.jp/dbget-bin/www_bget?map00601 - - - http://www.bacillondex.org/cv/KEGG - 224308 - 11803 - http://www.kegg.jp/dbget-bin/www_bget?map00604 - http://www.bacillondex.org/evidenceType/IMPD - Glycosphingolipid biosynthesis - ganglio series - Glycosphingolipid biosynthesis - ganglio series - - - 11804 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00602 - Glycosphingolipid biosynthesis - neo-lactoseries - http://www.bacillondex.org/cv/KEGG - Glycosphingolipid biosynthesis - neo-lactoseries - - - Glycosphingolipid biosynthesis - globo series - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00603 - http://www.bacillondex.org/evidenceType/IMPD - Glycosphingolipid biosynthesis - globo series - http://www.bacillondex.org/cv/KEGG - 11805 - - - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00621 - http://www.bacillondex.org/cv/KEGG - 11806 - Biphenyl degradation - Biphenyl degradation - - - Biosynthesis of type II polyketide backbone - Biosynthesis of type II polyketide backbone - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map01056 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 11808 - - - 11809 - Cysteine metabolism - Cysteine metabolism - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.kegg.jp/dbget-bin/www_bget?map00272 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - Steroid biosynthesis - Steroid biosynthesis - 224308 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?map00100 - 11810 - - - http://www.bacillondex.org/cv/KEGG - 11811 - http://www.kegg.jp/dbget-bin/www_bget?map00906 - Carotenoid biosynthesis - Carotenoid biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - 224308 - - - http://www.bacillondex.org/cv/KEGG - Sesquiterpenoid biosynthesis - http://www.kegg.jp/dbget-bin/www_bget?map00909 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - Sesquiterpenoid biosynthesis - 11813 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?map00902 - Monoterpenoid biosynthesis - 11814 - Monoterpenoid biosynthesis - http://www.bacillondex.org/evidenceType/IMPD - 224308 - - - Reductive carboxylate cycle (CO2 fixation) - Reductive carboxylate cycle (CO2 fixation) - 11815 - http://www.kegg.jp/dbget-bin/www_bget?map00720 - http://www.bacillondex.org/evidenceType/IMPD - 224308 - http://www.bacillondex.org/cv/KEGG - - - 14635 - http://www.kegg.jp/dbget-bin/www_bget?K00114 - E1.1.99.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - alcohol dehydrogenase (acceptor) [EC:1.1.99.8] - - - http://www.kegg.jp/dbget-bin/www_bget?K00844 - hexokinase [EC:2.7.1.1] - http://www.bacillondex.org/evidenceType/IMPD - 14638 - http://www.bacillondex.org/cv/KEGG - HK - - - 14641 - GALM - http://www.kegg.jp/dbget-bin/www_bget?K01785 - aldose 1-epimerase [EC:5.1.3.3] - http://www.bacillondex.org/cv/KEGG - E5.1.3.3 - http://www.bacillondex.org/evidenceType/IMPD - - - glucose-6-phosphatase [EC:3.1.3.9] - G6PC - http://www.kegg.jp/dbget-bin/www_bget?K01084 - 14644 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - glucose-1-phosphatase [EC:3.1.3.10] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01085 - 14647 - http://www.bacillondex.org/evidenceType/IMPD - AGP - - - polyphosphate glucokinase [EC:2.7.1.63] - 14650 - http://www.kegg.jp/dbget-bin/www_bget?K00886 - http://www.bacillondex.org/evidenceType/IMPD - PPGK - http://www.bacillondex.org/cv/KEGG - - - AOR - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03738 - 14653 - http://www.bacillondex.org/cv/KEGG - E1.2.7.5 - aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] - - - GAPN - 14656 - http://www.bacillondex.org/cv/KEGG - E1.2.1.9 - glyceraldehyde-3-phosphate dehydrogenase (NADP) [EC:1.2.1.9] - http://www.kegg.jp/dbget-bin/www_bget?K00131 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00169+K00170+K00171+K00172 - pyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.1] - PORA - http://www.bacillondex.org/evidenceType/IMPD - 14659 - - - pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] - http://www.bacillondex.org/cv/KEGG - PORB - http://www.kegg.jp/dbget-bin/www_bget?K00169+K00170+K00171+K00172 - http://www.bacillondex.org/evidenceType/IMPD - 14662 - - - PORD - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00169+K00170+K00171+K00172 - pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] - 14665 - - - http://www.kegg.jp/dbget-bin/www_bget?K00169+K00170+K00171+K00172 - pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1] - http://www.bacillondex.org/cv/KEGG - PORG - http://www.bacillondex.org/evidenceType/IMPD - 14668 - - - http://www.bacillondex.org/cv/KEGG - aldehyde dehydrogenase (NAD(P)+) [EC:1.2.1.5] - http://www.bacillondex.org/evidenceType/IMPD - 14671 - E1.2.1.5 - http://www.kegg.jp/dbget-bin/www_bget?K00129 - - - http://www.kegg.jp/dbget-bin/www_bget?K00002 - http://www.bacillondex.org/evidenceType/IMPD - 14674 - http://www.bacillondex.org/cv/KEGG - ADH - alcohol dehydrogenase (NADP+) [EC:1.1.1.2] - E1.1.1.2 - - - http://www.bacillondex.org/evidenceType/IMPD - pyruvate decarboxylase [EC:4.1.1.1] - E4.1.1.1 - http://www.kegg.jp/dbget-bin/www_bget?K01568 - 14677 - http://www.bacillondex.org/cv/KEGG - PDC - - - bisphosphoglycerate mutase [EC:5.4.2.4 5.4.2.1 3.1.3.13] - http://www.bacillondex.org/evidenceType/IMPD - 14680 - BPGM - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01837 - - - http://www.bacillondex.org/cv/KEGG - 14683 - http://www.bacillondex.org/evidenceType/IMPD - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] - KORA - http://www.kegg.jp/dbget-bin/www_bget?K00174+K00175+K00176+K00177 - - - http://www.kegg.jp/dbget-bin/www_bget?K00174+K00175+K00176+K00177 - http://www.bacillondex.org/evidenceType/IMPD - KORB - 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] - http://www.bacillondex.org/cv/KEGG - 14686 - - - http://www.kegg.jp/dbget-bin/www_bget?K00174+K00175+K00176+K00177 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - KORD - 14689 - 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] - - - 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14692 - http://www.kegg.jp/dbget-bin/www_bget?K00174+K00175+K00176+K00177 - KORG - - - 14695 - succinate dehydrogenase (ubiquinone) flavoprotein subunit[EC:1.3.5.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - SDHA - SDH1 - http://www.kegg.jp/dbget-bin/www_bget?K00234+K00235+K00236+K00237 - - - http://www.kegg.jp/dbget-bin/www_bget?K00234+K00235+K00236+K00237 - 14698 - succinate dehydrogenase (ubiquinone) iron-sulfur protein[EC:1.3.5.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - SDH2 - SDHB - - - http://www.kegg.jp/dbget-bin/www_bget?K00234+K00235+K00236+K00237 - http://www.bacillondex.org/evidenceType/IMPD - SDH3 - http://www.bacillondex.org/cv/KEGG - SDHC - succinate dehydrogenase (ubiquinone) cytochrome b subunit[EC:1.3.5.1] - 14701 - - - http://www.bacillondex.org/cv/KEGG - 14704 - succinate dehydrogenase (ubiquinone) membrane anchor subunit[EC:1.3.5.1] - SDH4 - http://www.kegg.jp/dbget-bin/www_bget?K00234+K00235+K00236+K00237 - SDHD - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - ATP citrate (pro-S)-lyase [EC:2.3.3.8] - ACLY - 14707 - http://www.kegg.jp/dbget-bin/www_bget?K01648 - http://www.bacillondex.org/evidenceType/IMPD - - - 14710 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - citrate lyase subunit alpha [EC:4.1.3.6] - CITF - http://www.kegg.jp/dbget-bin/www_bget?K01643+K01644+K01646 - - - http://www.kegg.jp/dbget-bin/www_bget?K01643+K01644+K01646 - CITE - http://www.bacillondex.org/evidenceType/IMPD - 14713 - citrate lyase subunit beta [EC:4.1.3.6] - http://www.bacillondex.org/cv/KEGG - - - citrate lyase subunit gamma [EC:4.1.3.6] - http://www.bacillondex.org/cv/KEGG - CITD - 14716 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01643+K01644+K01646 - - - IDH3 - 14719 - http://www.kegg.jp/dbget-bin/www_bget?K00030 - isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - GK - glycerate kinase [EC:2.7.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11529 - 14722 - - - 14725 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00115 - http://www.bacillondex.org/cv/KEGG - glucose dehydrogenase (acceptor) [EC:1.1.99.10] - E1.1.99.10 - - - http://www.kegg.jp/dbget-bin/www_bget?K01053 - E3.1.1.17 - gluconolactonase [EC:3.1.1.17] - 14728 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - quinoprotein glucose dehydrogenase [EC:1.1.5.2] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00117 - E1.1.5.2 - 14731 - http://www.bacillondex.org/evidenceType/IMPD - GCD - - - http://www.bacillondex.org/evidenceType/IMPD - KDGA - 14734 - 2-keto-3-deoxy-gluconate aldolase [EC:4.1.2.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11395 - - - E4.1.2.9 - phosphoketolase [EC:4.1.2.9] - 14737 - http://www.kegg.jp/dbget-bin/www_bget?K01621 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - KGUK - dehydrogluconokinase [EC:2.7.1.13] - http://www.kegg.jp/dbget-bin/www_bget?K11441 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 14740 - - - http://www.bacillondex.org/cv/KEGG - ribose 1,5-bisphosphokinase [EC:2.7.4.23] - http://www.kegg.jp/dbget-bin/www_bget?K05774 - http://www.bacillondex.org/evidenceType/IMPD - PHNN - 14743 - - - 14746 - phosphogluconate dehydratase [EC:4.2.1.12] - EDD - http://www.kegg.jp/dbget-bin/www_bget?K01690 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K05308 - gluconate dehydratase [EC:4.2.1.39] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14749 - GNAD - - - 14752 - http://www.kegg.jp/dbget-bin/www_bget?K06151+K06152 - gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] - E1.1.99.3A - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E1.1.99.3G - gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] - 14755 - http://www.kegg.jp/dbget-bin/www_bget?K06151+K06152 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - aldehyde reductase [EC:1.1.1.21] - AKR1 - 14758 - http://www.kegg.jp/dbget-bin/www_bget?K00011 - E1.1.1.21 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - L-xylulose reductase [EC:1.1.1.10] - http://www.kegg.jp/dbget-bin/www_bget?K03331 - http://www.bacillondex.org/cv/KEGG - 14761 - E1.1.1.10 - - - http://www.kegg.jp/dbget-bin/www_bget?K13247 - CRYL1 - 14764 - L-gulonate 3-dehydrogenase [EC:1.1.1.45] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 14767 - http://www.bacillondex.org/cv/KEGG - glucuronosyltransferase [EC:2.4.1.17] - UGT - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00699 - - - D-arabinitol 4-dehydrogenase [EC:1.1.1.11] - http://www.kegg.jp/dbget-bin/www_bget?K00007 - DALD - http://www.bacillondex.org/evidenceType/IMPD - 14770 - http://www.bacillondex.org/cv/KEGG - - - 14773 - http://www.kegg.jp/dbget-bin/www_bget?K00880 - http://www.bacillondex.org/cv/KEGG - L-xylulokinase [EC:2.7.1.53] - E2.7.1.53 - LYXK - http://www.bacillondex.org/evidenceType/IMPD - - - 14776 - http://www.bacillondex.org/cv/KEGG - E5.3.1.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01820 - - - http://www.kegg.jp/dbget-bin/www_bget?K05351 - http://www.bacillondex.org/cv/KEGG - D-xylulose reductase [EC:1.1.1.9] - http://www.bacillondex.org/evidenceType/IMPD - E1.1.1.9 - 14779 - - - 14782 - http://www.kegg.jp/dbget-bin/www_bget?K03081 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - SGBH - 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01184 - 14785 - polygalacturonase [EC:3.2.1.15] - http://www.bacillondex.org/cv/KEGG - E3.2.1.15 - - - 14788 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01195 - UIDA - beta-glucuronidase [EC:3.2.1.31] - GUSB - E3.2.1.31 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00039 - 14791 - ribitol 2-dehydrogenase [EC:1.1.1.56] - E1.1.1.56 - - - http://www.bacillondex.org/cv/KEGG - hexulose-6-phosphate isomerase [EC:5.-.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K03082 - http://www.bacillondex.org/evidenceType/IMPD - SGBU - 14794 - - - E3.1.1.11 - http://www.bacillondex.org/evidenceType/IMPD - pectinesterase [EC:3.1.1.11] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01051 - 14797 - - - http://www.bacillondex.org/cv/KEGG - E4.2.2.6 - http://www.kegg.jp/dbget-bin/www_bget?K01730 - http://www.bacillondex.org/evidenceType/IMPD - 14800 - oligogalacturonide lyase [EC:4.2.2.6] - - - RHAB - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00848 - rhamnulokinase [EC:2.7.1.5] - 14803 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01629 - http://www.bacillondex.org/evidenceType/IMPD - rhamnulose-1-phosphate aldolase [EC:4.1.2.19] - 14806 - RHAD - - - http://www.kegg.jp/dbget-bin/www_bget?K01213 - galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.2.1.67 - 14809 - - - E1.1.1.57 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00040 - 14812 - UXUB - fructuronate reductase [EC:1.1.1.57] - - - MANC - mannose-1-phosphate guanylyltransferase [EC:2.7.7.22] - 14815 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00971 - E2.7.7.22 - - - http://www.kegg.jp/dbget-bin/www_bget?K00068 - http://www.bacillondex.org/evidenceType/IMPD - sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140] - SRLD - E1.1.1.140 - 14818 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01711 - GMD - E4.2.1.47 - 14821 - GDPmannose 4,6-dehydratase [EC:4.2.1.47] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00966 - E2.7.7.13 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14824 - mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] - - - E2.7.1.90 - http://www.bacillondex.org/cv/KEGG - pyrophosphate--fructose-6-phosphate 1-phosphotransferase[EC:2.7.1.90] - http://www.kegg.jp/dbget-bin/www_bget?K00895 - http://www.bacillondex.org/evidenceType/IMPD - 14827 - PFK - - - PTS-GUT-EIIA - PTS system, glucitol/sorbitol-specific IIA component [EC:2.7.1.69] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02781+K02782+K02783 - http://www.bacillondex.org/cv/KEGG - SRLB - 14830 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02781+K02782+K02783 - http://www.bacillondex.org/cv/KEGG - 14833 - PTS system, glucitol/sorbitol-specific IIB component [EC:2.7.1.69] - SRLE - PTS-GUT-EIIB - - - PTS system, glucitol/sorbitol-specific IIC component - http://www.bacillondex.org/cv/KEGG - 14836 - PTS-GUT-EIIC - SRLA - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02781+K02782+K02783 - - - http://www.bacillondex.org/cv/KEGG - poly(beta-D-mannuronate) lyase [EC:4.2.2.3] - 14839 - ALGL - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01729 - - - 14842 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.1.3.46 - fructose-2,6-bisphosphatase [EC:3.1.3.46] - http://www.kegg.jp/dbget-bin/www_bget?K01103 - - - http://www.kegg.jp/dbget-bin/www_bget?K00900 - E2.7.1.105 - http://www.bacillondex.org/evidenceType/IMPD - 14845 - http://www.bacillondex.org/cv/KEGG - PFK - 6-phosphofructo-2-kinase [EC:2.7.1.105] - - - E2.4.1.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14848 - http://www.kegg.jp/dbget-bin/www_bget?K00754 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00976 - fucose-1-phosphate guanylyltransferase [EC:2.7.7.30] - FPGT - http://www.bacillondex.org/evidenceType/IMPD - 14851 - - - http://www.bacillondex.org/evidenceType/IMPD - GDP-L-fucose synthase [EC:1.1.1.271] - http://www.kegg.jp/dbget-bin/www_bget?K02377 - E1.1.1.271 - FCL - http://www.bacillondex.org/cv/KEGG - 14854 - - - 14857 - D-sorbitol dehydrogenase (acceptor) [EC:1.1.99.21] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K08261 - http://www.bacillondex.org/cv/KEGG - E1.1.99.21 - - - KHK - E2.7.1.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14860 - ketohexokinase [EC:2.7.1.3] - http://www.kegg.jp/dbget-bin/www_bget?K00846 - - - 14863 - http://www.kegg.jp/dbget-bin/www_bget?K01112 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.1.3.- - - - E2.4.1.217 - http://www.bacillondex.org/evidenceType/IMPD - mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217] - http://www.kegg.jp/dbget-bin/www_bget?K05947 - 14866 - http://www.bacillondex.org/cv/KEGG - - - 14869 - http://www.kegg.jp/dbget-bin/www_bget?K01628 - FUCA - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - L-fuculose-phosphate aldolase [EC:4.1.2.17] - - - http://www.kegg.jp/dbget-bin/www_bget?K07026 - http://www.bacillondex.org/evidenceType/IMPD - mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70] - http://www.bacillondex.org/cv/KEGG - 14872 - E3.1.3.70 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02812+K02813+K02814+K02815 - SORF - PTS-SOR-EIIA - http://www.bacillondex.org/evidenceType/IMPD - 14875 - PTS system, sorbose-specific IIA component [EC:2.7.1.69] - - - http://www.kegg.jp/dbget-bin/www_bget?K02812+K02813+K02814+K02815 - 14878 - PTS system, sorbose-specific IIB component [EC:2.7.1.69] - SORB - PTS-SOR-EIIB - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02812+K02813+K02814+K02815 - PTS-SOR-EIIC - http://www.bacillondex.org/cv/KEGG - 14881 - PTS system, sorbose-specific IIC component - SORA - - - 14884 - http://www.kegg.jp/dbget-bin/www_bget?K02812+K02813+K02814+K02815 - http://www.bacillondex.org/cv/KEGG - PTS-SOR-EIID - PTS system, sorbose-specific IID component - http://www.bacillondex.org/evidenceType/IMPD - SORM - - - FUK - fucokinase [EC:2.7.1.52] - 14887 - http://www.kegg.jp/dbget-bin/www_bget?K05305 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 14890 - http://www.kegg.jp/dbget-bin/www_bget?K01818 - FUCI - L-fucose isomerase [EC:5.3.1.25] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - GDP-mannose 6-dehydrogenase [EC:1.1.1.132] - http://www.bacillondex.org/cv/KEGG - 14893 - http://www.kegg.jp/dbget-bin/www_bget?K00066 - ALGD - - - 2-dehydro-3-deoxy-L-rhamnonate aldolase [EC:4.1.2.-] - 14896 - http://www.bacillondex.org/cv/KEGG - YFAU - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12660 - - - http://www.bacillondex.org/cv/KEGG - L-fuculokinase [EC:2.7.1.51] - 14899 - http://www.kegg.jp/dbget-bin/www_bget?K00879 - http://www.bacillondex.org/evidenceType/IMPD - FUCK - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03332 - E3.2.1.80 - http://www.bacillondex.org/cv/KEGG - 14902 - fructan beta-fructosidase [EC:3.2.1.80] - - - 14905 - http://www.kegg.jp/dbget-bin/www_bget?K12661 - YFAW - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - L-rhamnonate dehydratase [EC:4.2.1.90] - - - DGOK - http://www.bacillondex.org/cv/KEGG - 14908 - http://www.kegg.jp/dbget-bin/www_bget?K00883 - E2.7.1.58 - http://www.bacillondex.org/evidenceType/IMPD - 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] - - - http://www.bacillondex.org/cv/KEGG - galactose-1-phosphate uridylyltransferase [EC:2.7.7.10] - GALT - http://www.kegg.jp/dbget-bin/www_bget?K00964 - E2.7.7.10 - 14911 - http://www.bacillondex.org/evidenceType/IMPD - - - 14914 - http://www.bacillondex.org/evidenceType/IMPD - E4.2.1.6 - galactonate dehydratase [EC:4.2.1.6] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01684 - DGOAB - - - http://www.kegg.jp/dbget-bin/www_bget?K06617 - E2.4.1.82 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 14917 - raffinose synthase [EC:2.4.1.82] - - - http://www.bacillondex.org/cv/KEGG - PTS system, N-acetylgalactosamine-specific IIA component[EC:2.7.1.69] - PTS-AGA-EIIA - AGAF - 14920 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02744+K02745+K02746+K02747 - - - http://www.bacillondex.org/cv/KEGG - AGAV - 14923 - PTS system, N-acetylgalactosamine-specific IIB component[EC:2.7.1.69] - http://www.bacillondex.org/evidenceType/IMPD - PTS-AGA-EIIB - http://www.kegg.jp/dbget-bin/www_bget?K02744+K02745+K02746+K02747 - - - http://www.bacillondex.org/evidenceType/IMPD - PTS system, N-acetylgalactosamine-specific IIC component - http://www.kegg.jp/dbget-bin/www_bget?K02744+K02745+K02746+K02747 - 14926 - http://www.bacillondex.org/cv/KEGG - PTS-AGA-EIIC - AGAW - - - PTS system, N-acetylgalactosamine-specific IID component - http://www.bacillondex.org/evidenceType/IMPD - 14929 - AGAE - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02744+K02745+K02746+K02747 - PTS-AGA-EIID - - - http://www.bacillondex.org/cv/KEGG - PTS-GAT-EIIA - http://www.bacillondex.org/evidenceType/IMPD - GATA - http://www.kegg.jp/dbget-bin/www_bget?K02773+K02774+K02775 - 14932 - PTS system, galactitol-specific IIA component [EC:2.7.1.69] - - - PTS system, galactitol-specific IIB component [EC:2.7.1.69] - http://www.kegg.jp/dbget-bin/www_bget?K02773+K02774+K02775 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - PTS-GAT-EIIB - GATB - 14935 - - - http://www.kegg.jp/dbget-bin/www_bget?K02773+K02774+K02775 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14938 - PTS-GAT-EIIC - GATC - PTS system, galactitol-specific IIC component - - - http://www.bacillondex.org/evidenceType/IMPD - GATD - 14941 - http://www.bacillondex.org/cv/KEGG - E1.1.1.251 - galactitol-1-phosphate 5-dehydrogenase [EC:1.1.1.251] - http://www.kegg.jp/dbget-bin/www_bget?K00094 - - - E2.4.1.22 - lactose synthase [EC:2.4.1.22] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 14944 - http://www.kegg.jp/dbget-bin/www_bget?K00704 - - - tagatose 6-phosphate kinase [EC:2.7.1.144] - 14947 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00917 - http://www.bacillondex.org/evidenceType/IMPD - LACC - E2.7.1.144 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - PTS system, lactose-specific IIA component [EC:2.7.1.69] - LACF - 14950 - http://www.kegg.jp/dbget-bin/www_bget?K02786+K02787+K02788 - PTS-LAC-EIIA - - - 14953 - PTS-LAC-EIIB - http://www.bacillondex.org/evidenceType/IMPD - LACE - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02786+K02787+K02788 - PTS system, lactose-specific IIB component [EC:2.7.1.69] - - - PTS system, lactose-specific IIC component - PTS-LAC-EIIC - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - LACE - 14956 - http://www.kegg.jp/dbget-bin/www_bget?K02786+K02787+K02788 - - - http://www.bacillondex.org/cv/KEGG - E2.4.1.67 - http://www.bacillondex.org/evidenceType/IMPD - 14959 - stachyose synthetase [EC:2.4.1.67] - http://www.kegg.jp/dbget-bin/www_bget?K06611 - - - http://www.bacillondex.org/evidenceType/IMPD - E4.1.2.21 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01631 - 14962 - DGOAA - 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] - - - 6-phospho-beta-galactosidase [EC:3.2.1.85] - http://www.kegg.jp/dbget-bin/www_bget?K01220 - http://www.bacillondex.org/evidenceType/IMPD - LACG - http://www.bacillondex.org/cv/KEGG - 14965 - E3.2.1.85 - - - PTS system, galactosamine-specific IIB component [EC:2.7.1.69] - http://www.bacillondex.org/cv/KEGG - 14968 - http://www.kegg.jp/dbget-bin/www_bget?K02744+K10984+K10985+K10986 - AGAB - http://www.bacillondex.org/evidenceType/IMPD - PTS-GAM-EIIB - - - PTS-GAM-EIIC - http://www.kegg.jp/dbget-bin/www_bget?K02744+K10984+K10985+K10986 - 14971 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - AGAC - PTS system, galactosamine-specific IIC component - - - http://www.kegg.jp/dbget-bin/www_bget?K02744+K10984+K10985+K10986 - 14974 - http://www.bacillondex.org/cv/KEGG - PTS-GAM-EIID - PTS system, galactosamine-specific IID component - http://www.bacillondex.org/evidenceType/IMPD - AGAD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01635+K08302 - 14977 - tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] - LACD - http://www.bacillondex.org/cv/KEGG - - - AGAY - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01635+K08302 - http://www.bacillondex.org/evidenceType/IMPD - tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] - GATY - 14980 - - - http://www.bacillondex.org/cv/KEGG - galactose oxidase [EC:1.1.3.9] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04618 - E1.1.3.9 - 14983 - - - E5.3.1.26 - galactose-6-phosphate isomerase [EC:5.3.1.26] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01819 - LACB - LACA - http://www.bacillondex.org/cv/KEGG - 14986 - - - 14989 - http://www.bacillondex.org/evidenceType/IMPD - N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] - AGAA - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02079 - - - AGAI - http://www.kegg.jp/dbget-bin/www_bget?K02080 - galactosamine-6-phosphate isomerase [EC:5.3.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 14992 - - - 14995 - http://www.bacillondex.org/cv/KEGG - ULAF - L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03077 - SGAE - - - http://www.bacillondex.org/evidenceType/IMPD - ULAD - http://www.kegg.jp/dbget-bin/www_bget?K03078 - 14998 - 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] - http://www.bacillondex.org/cv/KEGG - SGAH - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03079 - L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] - http://www.bacillondex.org/cv/KEGG - SGAU - 15001 - ULAE - - - 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] - E4.1.2.20 - http://www.kegg.jp/dbget-bin/www_bget?K01630 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - GARL - 15004 - - - L-galactono-1,4-lactone dehydorogenase [EC:1.3.2.3] - E1.3.2.3 - 15007 - http://www.kegg.jp/dbget-bin/www_bget?K00225 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - ULAG - 15010 - http://www.bacillondex.org/evidenceType/IMPD - L-ascorbate 6-phosphate lactonase [EC:3.1.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K03476 - - - PTS system, ascorbate-specific IIA component [EC:2.7.1.69] - PTS-ULA-EIIA - http://www.kegg.jp/dbget-bin/www_bget?K02821+K02822+K03475 - ULAC - 15013 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - SGAA - - - PTS-ULA-EIIB - PTS system, ascorbate-specific IIB component [EC:2.7.1.69] - ULAB - SGAB - 15016 - http://www.kegg.jp/dbget-bin/www_bget?K02821+K02822+K03475 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - PTS-ULA-EIIC - http://www.bacillondex.org/cv/KEGG - PTS system, ascorbate-specific IIC component - 15019 - SGAT - http://www.bacillondex.org/evidenceType/IMPD - ULAA - http://www.kegg.jp/dbget-bin/www_bget?K02821+K02822+K03475 - - - 15022 - L-galactose 1-phosphate phosphatase [EC:3.1.3.-] - VTC4 - http://www.kegg.jp/dbget-bin/www_bget?K10047 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00064 - D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] - E1.1.1.122 - 15025 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E1.1.3.8 - L-gulonolactone oxidase [EC:1.1.3.8] - 15028 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00103 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K10046 - GME - GDP-D-mannose 3', 5'-epimerase [EC:5.1.3.18 5.1.3.-] - 15031 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.3.3.12 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05276 - 15034 - L-galactonolactone oxidase [EC:1.3.3.12] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 15037 - MIOX - http://www.kegg.jp/dbget-bin/www_bget?K00469 - http://www.bacillondex.org/cv/KEGG - inositol oxygenase [EC:1.13.99.1] - - - http://www.bacillondex.org/cv/KEGG - E1.11.1.11 - 15040 - L-ascorbate peroxidase [EC:1.11.1.11] - http://www.kegg.jp/dbget-bin/www_bget?K00434 - http://www.bacillondex.org/evidenceType/IMPD - - - 15043 - L-ascorbate oxidase [EC:1.10.3.3] - E1.10.3.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00423 - - - http://www.bacillondex.org/cv/KEGG - 15046 - E1.6.5.4 - http://www.kegg.jp/dbget-bin/www_bget?K08232 - http://www.bacillondex.org/evidenceType/IMPD - monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - - - http://www.bacillondex.org/evidenceType/IMPD - FABK - http://www.bacillondex.org/cv/KEGG - 15049 - http://www.kegg.jp/dbget-bin/www_bget?K02371 - enoyl-[acyl carrier protein] reductase II [EC:1.3.1.-] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - FAS1 - http://www.kegg.jp/dbget-bin/www_bget?K00668 - 15052 - fatty acid synthase subunit beta, fungi type [EC:2.3.1.86] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00665 - http://www.bacillondex.org/evidenceType/IMPD - FASN - fatty acid synthase, animal type [EC:2.3.1.85] - 15055 - - - http://www.bacillondex.org/cv/KEGG - fatty acid synthase, bacteria type [EC:2.3.1.-] - 15058 - FAS - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11533 - - - fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K10781 - FATB - 15061 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - DESA1 - 15064 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03921+K03922 - acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2] - - - http://www.bacillondex.org/cv/KEGG - 15067 - http://www.bacillondex.org/evidenceType/IMPD - acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2] - http://www.kegg.jp/dbget-bin/www_bget?K03921+K03922 - DESA2 - - - 15070 - http://www.bacillondex.org/cv/KEGG - FABB - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00647 - 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] - - - FAS2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - fatty acid synthase subunit alpha, fungi type [EC:2.3.1.86] - http://www.kegg.jp/dbget-bin/www_bget?K00667 - 15073 - - - http://www.bacillondex.org/evidenceType/IMPD - oleoyl-[acyl-carrier-protein] hydrolase [EC:3.1.2.14] - http://www.bacillondex.org/cv/KEGG - E3.1.2.14 - http://www.kegg.jp/dbget-bin/www_bget?K01071+K10781 - 15076 - - - 15079 - FATA - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - fatty acyl-ACP thioesterase A [EC:3.1.2.14 3.1.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K01071+K10781+K10782 - - - http://www.bacillondex.org/cv/KEGG - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.60] - http://www.bacillondex.org/evidenceType/IMPD - FABA - 15082 - http://www.kegg.jp/dbget-bin/www_bget?K01716 - - - 15085 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11263 - http://www.bacillondex.org/evidenceType/IMPD - acetyl/propionyl carboxylase subunit alpha - BCCA - - - acetyl-CoA acyltransferase 2 [EC:2.3.1.16] - 15088 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ACAA2 - http://www.kegg.jp/dbget-bin/www_bget?K07508+K07509 - - - 15091 - HADHB - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - acetyl-CoA acyltransferase [EC:2.3.1.16] - http://www.kegg.jp/dbget-bin/www_bget?K07508+K07509 - - - http://www.bacillondex.org/cv/KEGG - mitochondrial trans-2-enoyl-CoA reductase [EC:1.3.1.38] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07512 - MECR - 15094 - NRBF1 - - - enoyl-CoA hydratase [EC:4.2.1.17] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ECHS1 - 15097 - http://www.kegg.jp/dbget-bin/www_bget?K07511+K07515 - - - 15100 - HADHA1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - enoyl-CoA hydratase [EC:4.2.1.17] - http://www.kegg.jp/dbget-bin/www_bget?K07511+K07515 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15103 - long-chain 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.211] - HADHA2 - http://www.kegg.jp/dbget-bin/www_bget?K07510 - - - 15106 - http://www.bacillondex.org/cv/KEGG - palmitoyl-protein thioesterase [EC:3.1.2.22] - http://www.kegg.jp/dbget-bin/www_bget?K01074 - PPT - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 15109 - http://www.kegg.jp/dbget-bin/www_bget?K00249 - http://www.bacillondex.org/cv/KEGG - acyl-CoA dehydrogenase [EC:1.3.99.3] - ACD - E1.3.99.3 - ACADM - - - long-chain-acyl-CoA dehydrogenase [EC:1.3.99.13] - ACADL - http://www.kegg.jp/dbget-bin/www_bget?K00255 - http://www.bacillondex.org/evidenceType/IMPD - E1.3.99.13 - http://www.bacillondex.org/cv/KEGG - 15112 - - - E1.14.15.3 - 15115 - http://www.bacillondex.org/cv/KEGG - alkane 1-monooxygenase [EC:1.14.15.3] - http://www.kegg.jp/dbget-bin/www_bget?K00496 - http://www.bacillondex.org/evidenceType/IMPD - - - 15118 - FADA - http://www.kegg.jp/dbget-bin/www_bget?K00632+K07508+K07509+K07513 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - acetyl-CoA acyltransferase [EC:2.3.1.16] - E2.3.1.16 - - - acetyl-CoA acyltransferase 1 [EC:2.3.1.16] - http://www.bacillondex.org/evidenceType/IMPD - 15121 - ACAA1 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00632+K07508+K07509+K07513 - - - rubredoxin-NAD+ reductase [EC:1.18.1.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05297 - 15124 - http://www.bacillondex.org/cv/KEGG - E1.18.1.1 - - - 3-hydroxybutyryl-CoA epimerase [EC:5.1.2.3] - http://www.kegg.jp/dbget-bin/www_bget?K01782 - 15127 - E5.1.2.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01909 - http://www.bacillondex.org/cv/KEGG - long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:6.2.1.20] - AAS - 15130 - http://www.bacillondex.org/evidenceType/IMPD - E6.2.1.20 - - - E5.3.3.8 - http://www.bacillondex.org/evidenceType/IMPD - FADB - http://www.kegg.jp/dbget-bin/www_bget?K01825+K07514+K13238+K13239 - http://www.bacillondex.org/cv/KEGG - 15133 - dodecenoyl-CoA delta-isomerase [EC:5.3.3.8] - - - http://www.kegg.jp/dbget-bin/www_bget?K01825+K07514+K13238+K13239 - EHHADH - http://www.bacillondex.org/evidenceType/IMPD - enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /3,2-trans-enoyl-CoA isomerase [EC:4.2.1.17 1.1.1.35 5.3.3.8] - http://www.bacillondex.org/cv/KEGG - 15136 - - - http://www.kegg.jp/dbget-bin/www_bget?K01825+K07514+K13238+K13239 - DCI - 15139 - 3,2-trans-enoyl-CoA isomerase, mitochondrial [EC:5.3.3.8] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - peroxisomal 3,2-trans-enoyl-CoA isomerase [EC:5.3.3.8] - 15142 - http://www.kegg.jp/dbget-bin/www_bget?K01825+K07514+K13238+K13239 - http://www.bacillondex.org/evidenceType/IMPD - PECI - - - CPT1 - http://www.kegg.jp/dbget-bin/www_bget?K08765+K08766 - carnitine O-palmitoyltransferase 1 [EC:2.3.1.21] - 15145 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E2.3.1.21I - - - E2.3.1.21II - CPT2 - 15148 - http://www.kegg.jp/dbget-bin/www_bget?K08765+K08766 - http://www.bacillondex.org/cv/KEGG - carnitine O-palmitoyltransferase 2 [EC:2.3.1.21] - http://www.bacillondex.org/evidenceType/IMPD - - - ACOX3 - http://www.kegg.jp/dbget-bin/www_bget?K00232 - ACOX1 - http://www.bacillondex.org/evidenceType/IMPD - 15151 - acyl-CoA oxidase [EC:1.3.3.6] - http://www.bacillondex.org/cv/KEGG - E1.3.3.6 - - - E1.3.99.7 - 15154 - GCDH - glutaryl-CoA dehydrogenase [EC:1.3.99.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00252 - http://www.bacillondex.org/cv/KEGG - - - acetoacetate decarboxylase [EC:4.1.1.4] - ADC - http://www.kegg.jp/dbget-bin/www_bget?K01574 - E4.1.1.4 - 15157 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E2.1.1.95 - 15160 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05928 - tocopherol O-methyltransferase [EC:2.1.1.95] - - - http://www.kegg.jp/dbget-bin/www_bget?K09834 - SXD1 - tocopherol cyclase - VTE1 - 15163 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 4-coumarate--CoA ligase [EC:6.2.1.12] - http://www.kegg.jp/dbget-bin/www_bget?K01904 - 15166 - http://www.bacillondex.org/evidenceType/IMPD - E6.2.1.12 - - - chorismate--pyruvate lyase [EC:4.1.3.40] - UBIC - http://www.bacillondex.org/evidenceType/IMPD - 15169 - http://www.kegg.jp/dbget-bin/www_bget?K03181 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12502 - VTE3 - APG1 - 15172 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - MPBQ/MSBQ methyltransferase - - - 15175 - tyrosine aminotransferase [EC:2.6.1.5] - E2.6.1.5 - http://www.kegg.jp/dbget-bin/www_bget?K00815 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - HST - homogentisate solanesyltransferase - http://www.bacillondex.org/cv/KEGG - 15178 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12501 - - - K11782 - http://www.kegg.jp/dbget-bin/www_bget?K11782 - chorismate futalosine-lyase [EC:4.1.99.-] - http://www.bacillondex.org/cv/KEGG - 15181 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 1,4-dihydroxy-6-naphthoate synthase [EC:1.14.-.-] - K11785 - http://www.kegg.jp/dbget-bin/www_bget?K11785 - http://www.bacillondex.org/cv/KEGG - 15184 - - - homogenitisate phytyltransferase - HPT - http://www.bacillondex.org/cv/KEGG - TPT - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K09833 - 15187 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11784 - K11784 - 15190 - de-hypoxanthine futalosine synthase [EC:1.21.-.-] - http://www.bacillondex.org/evidenceType/IMPD - - - 15193 - MQNB - futalosine hydrolase [EC:3.2.2.26] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11783 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01075 - 15196 - http://www.bacillondex.org/cv/KEGG - 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] - E3.1.2.23 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00457 - 15199 - http://www.bacillondex.org/evidenceType/IMPD - 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] - HPD - HPPD - - - K12073 - http://www.kegg.jp/dbget-bin/www_bget?K12073 - 1,4-dihydroxy-2-naphthoyl-CoA thioesterase [EC:3.1.2.-] - 15202 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E3.1.4.17 - PDE - 15205 - http://www.bacillondex.org/cv/KEGG - 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] - http://www.kegg.jp/dbget-bin/www_bget?K01120 - - - purine nucleosidase [EC:3.2.2.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15208 - IUNH - http://www.kegg.jp/dbget-bin/www_bget?K01239 - E3.2.2.1 - - - 15211 - http://www.bacillondex.org/cv/KEGG - adenylate cyclase [EC:4.6.1.1] - http://www.bacillondex.org/evidenceType/IMPD - E4.6.1.1 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - - - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - CYAA - adenylate cyclase, class 1 [EC:4.6.1.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.6.1.1A - 15214 - - - CYAB - http://www.bacillondex.org/evidenceType/IMPD - adenylate cyclase, class 2 [EC:4.6.1.1] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - 15217 - E4.6.1.1B - - - ADCY1 - adenylate cyclase 1 [EC:4.6.1.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - 15220 - - - 15223 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ADCY2 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - adenylate cyclase 2 [EC:4.6.1.1] - - - adenylate cyclase 3 [EC:4.6.1.1] - 15226 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ADCY3 - - - http://www.bacillondex.org/evidenceType/IMPD - adenylate cyclase 4 [EC:4.6.1.1] - 15229 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - http://www.bacillondex.org/cv/KEGG - ADCY4 - - - 15232 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - adenylate cyclase 5 [EC:4.6.1.1] - ADCY5 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - ADCY6 - http://www.bacillondex.org/evidenceType/IMPD - 15235 - adenylate cyclase 6 [EC:4.6.1.1] - - - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - http://www.bacillondex.org/cv/KEGG - 15238 - ADCY7 - adenylate cyclase 7 [EC:4.6.1.1] - http://www.bacillondex.org/evidenceType/IMPD - - - adenylate cyclase 8 [EC:4.6.1.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15241 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - ADCY8 - - - http://www.bacillondex.org/evidenceType/IMPD - ADCY9 - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - http://www.bacillondex.org/cv/KEGG - 15244 - adenylate cyclase 9 [EC:4.6.1.1] - - - http://www.bacillondex.org/cv/KEGG - 15247 - CYAA - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - anthrax edema toxin adenylate cyclase [EC:4.6.1.1] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K01768+K05851+K05873+K08041+K08042+K08043+K08044+K08045+K08046+K08047+K08048+K08049+K11029+K11265 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15250 - adenylate cyclase 10 [EC:4.6.1.1] - ADCY10 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01475 - 15253 - http://www.bacillondex.org/cv/KEGG - E3.5.2.- - - - apyrase [EC:3.6.1.5] - http://www.bacillondex.org/evidenceType/IMPD - E3.6.1.5 - 15256 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01510 - - - ribonucleoside-triphosphate reductase [EC:1.17.4.2] - http://www.kegg.jp/dbget-bin/www_bget?K00527 - 15259 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - NRDD - - - deoxyadenosine kinase [EC:2.7.1.76] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10353 - 15262 - DAK - http://www.bacillondex.org/evidenceType/IMPD - E2.7.1.76 - - - http://www.kegg.jp/dbget-bin/www_bget?K10213 - http://www.bacillondex.org/evidenceType/IMPD - ribosylpyrimidine nucleosidase [EC:3.2.2.8] - http://www.bacillondex.org/cv/KEGG - RIHB - 15265 - - - ITPA - nucleoside-triphosphate pyrophosphatase [EC:3.6.1.19] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01519+K02428 - http://www.bacillondex.org/cv/KEGG - 15268 - - - 15271 - http://www.bacillondex.org/cv/KEGG - nucleoside-triphosphate pyrophosphatase [EC:3.6.1.19] - http://www.kegg.jp/dbget-bin/www_bget?K01519+K02428 - http://www.bacillondex.org/evidenceType/IMPD - MAZG - - - http://www.bacillondex.org/cv/KEGG - E2.7.7.53 - 15274 - ATP adenylyltransferase [EC:2.7.7.53] - http://www.kegg.jp/dbget-bin/www_bget?K00988 - http://www.bacillondex.org/evidenceType/IMPD - - - bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29] - FHIT - http://www.kegg.jp/dbget-bin/www_bget?K01522 - 15277 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - phosphoribosylaminoimidazole carboxylase /phosphoribosylaminoimidazole-succinocarboxamide synthase[EC:4.1.1.21 6.3.2.6] - http://www.bacillondex.org/evidenceType/IMPD - 15280 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01587+K11808 - PAICS - - - http://www.kegg.jp/dbget-bin/www_bget?K01587+K11808 - phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21] - ADE2 - http://www.bacillondex.org/evidenceType/IMPD - 15283 - http://www.bacillondex.org/cv/KEGG - - - 15286 - xanthine oxidase [EC:1.17.3.2] - http://www.kegg.jp/dbget-bin/www_bget?K00106 - XDH - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01511+K12304+K12305 - ENTPD5_6 - 15289 - ectonucleoside triphosphate diphosphohydrolase 5/6 [EC:3.6.1.6] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 15292 - http://www.kegg.jp/dbget-bin/www_bget?K01511+K12304+K12305 - CANT1 - soluble calcium-activated nucleotidase 1 [EC:3.6.1.6] - http://www.bacillondex.org/cv/KEGG - - - ENTPD4 - LALP70 - http://www.kegg.jp/dbget-bin/www_bget?K01511+K12304+K12305 - ectonucleoside triphosphate diphosphohydrolase 4 [EC:3.6.1.6] - 15295 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - APAH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] - http://www.kegg.jp/dbget-bin/www_bget?K01525 - 15298 - http://www.bacillondex.org/evidenceType/IMPD - - - 15301 - http://www.bacillondex.org/evidenceType/IMPD - 5'-nucleotidase [EC:3.1.3.5] - http://www.kegg.jp/dbget-bin/www_bget?K01081+K03787+K08722+K08723+K11751 - http://www.bacillondex.org/cv/KEGG - E3.1.3.5 - - - http://www.kegg.jp/dbget-bin/www_bget?K01081+K03787+K08722+K08723+K11751 - SURE - 5'-nucleotidase [EC:3.1.3.5] - 15304 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01081+K03787+K08722+K08723+K11751 - 5'-nucleotidase [EC:3.1.3.5] - 15307 - http://www.bacillondex.org/evidenceType/IMPD - YFBR - - - 5'-nucleotidase [EC:3.1.3.5] - http://www.kegg.jp/dbget-bin/www_bget?K01081+K03787+K08722+K08723+K11751 - 15310 - YJJG - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - USHA - http://www.bacillondex.org/evidenceType/IMPD - 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] - 15313 - http://www.kegg.jp/dbget-bin/www_bget?K01081+K03787+K08722+K08723+K11751 - http://www.bacillondex.org/cv/KEGG - - - 15316 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - E4.6.1.2 - guanylate cyclase, other [EC:4.6.1.2] - - - http://www.bacillondex.org/cv/KEGG - guanylate cyclase soluble subunit alpha [EC:4.6.1.2] - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - GUCY1A - http://www.bacillondex.org/evidenceType/IMPD - 15319 - - - http://www.bacillondex.org/cv/KEGG - GUCY1B - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - http://www.bacillondex.org/evidenceType/IMPD - guanylate cyclase soluble subunit beta [EC:4.6.1.2] - 15322 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - heat-stable enterotoxin receptor [EC:4.6.1.2] - http://www.bacillondex.org/cv/KEGG - GUCY2C - 15325 - - - guanylate cyclase 2D/E/F [EC:4.6.1.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - GUCY2D_E_F - 15328 - - - http://www.bacillondex.org/cv/KEGG - NPR1 - atrial natriuretic peptide receptor A [EC:4.6.1.2] - 15331 - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - http://www.bacillondex.org/evidenceType/IMPD - - - 15334 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01769+K12318+K12319+K12320+K12321+K12323+K12324 - NPR2 - atrial natriuretic peptide receptor B [EC:4.6.1.2] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01513 - 15337 - E3.6.1.9 - http://www.bacillondex.org/cv/KEGG - nucleotide pyrophosphatase [EC:3.6.1.9] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00892 - inosine kinase [EC:2.7.1.73] - http://www.bacillondex.org/cv/KEGG - GSK - 15340 - - - 15343 - http://www.bacillondex.org/cv/KEGG - ATP diphosphatase [EC:3.6.1.8] - http://www.kegg.jp/dbget-bin/www_bget?K04765 - http://www.bacillondex.org/evidenceType/IMPD - E3.6.1.8 - - - http://www.kegg.jp/dbget-bin/www_bget?K01936 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15346 - E6.3.4.1 - GMP synthase [EC:6.3.4.1] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01518 - http://www.bacillondex.org/cv/KEGG - bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] - 15349 - E3.6.1.17 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01241 - AMP nucleosidase [EC:3.2.2.4] - 15352 - AMN - - - http://www.kegg.jp/dbget-bin/www_bget?K01488 - ADA - 15355 - E3.5.4.4 - ADD - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - adenosine deaminase [EC:3.5.4.4] - - - E3.5.4.6 - AMPD - 15358 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - AMP deaminase [EC:3.5.4.6] - http://www.kegg.jp/dbget-bin/www_bget?K01490 - - - http://www.kegg.jp/dbget-bin/www_bget?K00856 - 15361 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - adenosine kinase [EC:2.7.1.20] - ADK - E2.7.1.20 - - - DGT - 15364 - dGTPase [EC:3.1.5.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01129 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - deoxyguanosine kinase [EC:2.7.1.113] - 15367 - E2.7.1.113 - DGK - http://www.kegg.jp/dbget-bin/www_bget?K00904 - - - PURP - 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl5'-monophosphate synthetase [EC:6.3.4.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06863 - http://www.bacillondex.org/cv/KEGG - 15370 - - - carbamate kinase [EC:2.7.2.2] - ARCC - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15373 - http://www.kegg.jp/dbget-bin/www_bget?K00926 - - - xanthosine phosphorylase [EC:2.4.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K03815 - XAPA - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15376 - - - http://www.bacillondex.org/cv/KEGG - 15379 - ADP-ribose diphosphatase [EC:3.6.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K08312 - http://www.bacillondex.org/evidenceType/IMPD - NUDE - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - GPPA - 15382 - http://www.kegg.jp/dbget-bin/www_bget?K01524 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase[EC:3.6.1.40] - - - http://www.bacillondex.org/evidenceType/IMPD - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase[EC:3.1.7.2] - 15385 - SPOT - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01139 - - - http://www.bacillondex.org/evidenceType/IMPD - ALLA - http://www.kegg.jp/dbget-bin/www_bget?K01483 - 15388 - http://www.bacillondex.org/cv/KEGG - ureidoglycolate hydrolase [EC:3.5.3.19] - - - ALC - http://www.kegg.jp/dbget-bin/www_bget?K01477 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.5.3.4 - 15391 - allantoicase [EC:3.5.3.4] - ALLC - - - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 1, subfamily A, polypeptide 2 [EC:1.14.14.1] - 15394 - http://www.kegg.jp/dbget-bin/www_bget?K07409 - http://www.bacillondex.org/evidenceType/IMPD - CYP1A2 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12731 - caffeine synthase [EC:2.1.1.160] - http://www.bacillondex.org/cv/KEGG - 15397 - DXMT - - - http://www.kegg.jp/dbget-bin/www_bget?K07409+K07411 - CYP2A - cytochrome P450, family 2, subfamily A [EC:1.14.14.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15400 - - - http://www.bacillondex.org/cv/KEGG - XMT - http://www.kegg.jp/dbget-bin/www_bget?K12729 - http://www.bacillondex.org/evidenceType/IMPD - 7-methylxanthosine synthase [EC:2.1.1.158] - 15403 - - - http://www.kegg.jp/dbget-bin/www_bget?K01240 - E3.2.2.3 - uridine nucleosidase [EC:3.2.2.3] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15406 - - - UDP - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00757 - uridine phosphorylase [EC:2.4.2.3] - E2.4.2.3 - http://www.bacillondex.org/cv/KEGG - 15409 - - - 15412 - http://www.kegg.jp/dbget-bin/www_bget?K01431 - E3.5.1.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - beta-ureidopropionase [EC:3.5.1.6] - - - http://www.bacillondex.org/cv/KEGG - E1.3.1.2 - 15415 - dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - http://www.kegg.jp/dbget-bin/www_bget?K00207 - http://www.bacillondex.org/evidenceType/IMPD - DPYD - - - DPYS - http://www.kegg.jp/dbget-bin/www_bget?K01464 - 15418 - dihydropyrimidinase [EC:3.5.2.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.5.2.2 - - - http://www.bacillondex.org/evidenceType/IMPD - nucleoside-triphosphate--adenylate kinase [EC:2.7.4.10] - 15421 - E2.7.4.10 - http://www.kegg.jp/dbget-bin/www_bget?K00944 - http://www.bacillondex.org/cv/KEGG - - - DCD - E3.5.4.13 - 15424 - http://www.kegg.jp/dbget-bin/www_bget?K01494 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - dCTP deaminase [EC:3.5.4.13] - - - 15427 - http://www.bacillondex.org/cv/KEGG - THY1 - thymidylate synthase (FAD) [EC:2.1.1.148] - http://www.kegg.jp/dbget-bin/www_bget?K03465 - http://www.bacillondex.org/evidenceType/IMPD - THYX - E2.1.1.148 - - - http://www.kegg.jp/dbget-bin/www_bget?K09887 - E3.5.4.30 - dCTP deaminase (dUMP-forming) [EC:3.5.4.30] - http://www.bacillondex.org/evidenceType/IMPD - 15430 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 15433 - E4.2.1.70 - http://www.kegg.jp/dbget-bin/www_bget?K01718 - http://www.bacillondex.org/cv/KEGG - pseudouridylate synthase [EC:4.2.1.70] - - - DHODH - dihydroorotate dehydrogenase [EC:1.3.5.2] - http://www.kegg.jp/dbget-bin/www_bget?K00254 - 15436 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - CODA - cytosine deaminase [EC:3.5.4.1] - http://www.kegg.jp/dbget-bin/www_bget?K01485 - E3.5.4.1 - http://www.bacillondex.org/evidenceType/IMPD - 15439 - - - DEOA - http://www.kegg.jp/dbget-bin/www_bget?K00758 - 15442 - thymidine phosphorylase [EC:2.4.2.4] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E2.4.2.4 - - - http://www.bacillondex.org/evidenceType/IMPD - 15445 - E2.4.2.6 - http://www.bacillondex.org/cv/KEGG - nucleoside deoxyribosyltransferase [EC:2.4.2.6] - http://www.kegg.jp/dbget-bin/www_bget?K08728 - - - 15448 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01508 - E3.6.1.2 - trimetaphosphatase [EC:3.6.1.2] - - - DCK - http://www.bacillondex.org/cv/KEGG - deoxycitidine kinase [EC:2.7.1.74] - http://www.kegg.jp/dbget-bin/www_bget?K00893 - http://www.bacillondex.org/evidenceType/IMPD - 15451 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00827+K00830+K13290 - alanine--glyoxylate transaminase /(R)-3-amino-2-methylpropionate-pyruvate transaminase [EC:2.6.1.442.6.1.40] - http://www.bacillondex.org/evidenceType/IMPD - 15454 - AGXT2 - - - http://www.kegg.jp/dbget-bin/www_bget?K00827+K00830+K13290 - http://www.bacillondex.org/evidenceType/IMPD - alanine--glyoxylate transaminase / serine--pyruvate aminotransferase[EC:2.6.1.44 2.6.1.51] - http://www.bacillondex.org/cv/KEGG - AGXT - 15457 - - - 15460 - alanine-glyoxylate transaminase / serine-glyoxylate transaminase /serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] - AGT1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00827+K00830+K13290 - - - http://www.bacillondex.org/cv/KEGG - alanine transaminase [EC:2.6.1.2] - E2.6.1.2 - GPT - 15463 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00814 - - - D-aspartate oxidase [EC:1.4.3.1] - 15466 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00272 - DDO - - - http://www.bacillondex.org/evidenceType/IMPD - CPS1 - carbamoyl-phosphate synthase (ammonia) [EC:6.3.4.16] - http://www.kegg.jp/dbget-bin/www_bget?K01948 - http://www.bacillondex.org/cv/KEGG - 15469 - - - succinate-semialdehyde dehydrogenase [EC:1.2.1.24] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00139 - 15472 - E1.2.1.24 - - - 15475 - http://www.bacillondex.org/cv/KEGG - aspartate 4-decarboxylase [EC:4.1.1.12] - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.12 - http://www.kegg.jp/dbget-bin/www_bget?K09758 - - - http://www.kegg.jp/dbget-bin/www_bget?K01914 - aspartate--ammonia ligase [EC:6.3.1.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15478 - ASNA - - - E3.5.1.15 - http://www.bacillondex.org/evidenceType/IMPD - 15481 - aspartoacylase [EC:3.5.1.15] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01437 - ASPA - - - aspartate racemase [EC:5.1.1.13] - E5.1.1.13 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01779 - 15484 - - - GADB - 15487 - http://www.bacillondex.org/cv/KEGG - glutamate decarboxylase [EC:4.1.1.15] - http://www.kegg.jp/dbget-bin/www_bget?K01580 - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.15 - - - http://www.bacillondex.org/cv/KEGG - E1.4.1.4 - glutamate dehydrogenase (NADP+) [EC:1.4.1.4] - 15490 - http://www.bacillondex.org/evidenceType/IMPD - GDHA - http://www.kegg.jp/dbget-bin/www_bget?K00262 - - - sarcosine oxidase [EC:1.5.3.1] - 15493 - http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305 - E1.5.3.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305 - 15496 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - sarcosine oxidase, subunit alpha [EC:1.5.3.1] - SOXA - - - http://www.bacillondex.org/cv/KEGG - sarcosine oxidase, subunit beta [EC:1.5.3.1] - SOXB - http://www.bacillondex.org/evidenceType/IMPD - 15499 - http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305 - - - 15502 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - SOXD - http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305 - sarcosine oxidase, subunit delta [EC:1.5.3.1] - - - sarcosine oxidase, subunit gamma [EC:1.5.3.1] - http://www.bacillondex.org/evidenceType/IMPD - 15505 - http://www.bacillondex.org/cv/KEGG - SOXG - http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305 - - - http://www.bacillondex.org/evidenceType/IMPD - 15508 - sarcosine dehydrogenase [EC:1.5.99.1] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00314 - E1.5.99.1 - - - http://www.bacillondex.org/cv/KEGG - phosphoserine phosphatase [EC:3.1.3.3] - http://www.kegg.jp/dbget-bin/www_bget?K01079+K02203 - http://www.bacillondex.org/evidenceType/IMPD - 15511 - E3.1.3.3 - SERB - - - http://www.kegg.jp/dbget-bin/www_bget?K01079+K02203 - THRH - http://www.bacillondex.org/evidenceType/IMPD - phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] - 15514 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 15517 - http://www.kegg.jp/dbget-bin/www_bget?K00273 - http://www.bacillondex.org/cv/KEGG - E1.4.3.3 - D-amino-acid oxidase [EC:1.4.3.3] - DAO - - - LTAA - http://www.kegg.jp/dbget-bin/www_bget?K01620 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E4.1.2.5 - 15520 - threonine aldolase [EC:4.1.2.5] - - - http://www.bacillondex.org/cv/KEGG - guanidinoacetate N-methyltransferase [EC:2.1.1.2] - 15523 - GAMT - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00542 - - - glycerate dehydrogenase [EC:1.1.1.29] - E1.1.1.29 - 15526 - http://www.kegg.jp/dbget-bin/www_bget?K00018 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E1.5.99.2 - 15529 - http://www.kegg.jp/dbget-bin/www_bget?K00315 - dimethylglycine dehydrogenase [EC:1.5.99.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E4.2.1.22 - http://www.kegg.jp/dbget-bin/www_bget?K01697 - cystathionine beta-synthase [EC:4.2.1.22] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - CBS - 15532 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.4.1.1 - 15535 - http://www.kegg.jp/dbget-bin/www_bget?K01758 - cystathionine gamma-lyase [EC:4.4.1.1] - - - serine racemase [EC:5.1.1.18] - SRR - http://www.kegg.jp/dbget-bin/www_bget?K12235 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15538 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.14.15.7 - choline monooxygenase [EC:1.14.15.7] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00499 - 15541 - - - 15544 - GATM - glycine amidinotransferase [EC:2.1.4.1] - http://www.kegg.jp/dbget-bin/www_bget?K00613 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10674 - ectoine hydroxylase [EC:1.14.11.-] - 15547 - ECTD - http://www.bacillondex.org/evidenceType/IMPD - - - 15550 - ECTC - L-ectoine synthase [EC:4.2.1.108] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06720 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00544 - BHMT - 15553 - http://www.bacillondex.org/cv/KEGG - betaine-homocysteine S-methyltransferase [EC:2.1.1.5] - - - http://www.kegg.jp/dbget-bin/www_bget?K00108 - CHDH - E1.1.99.1 - BETA - 15556 - choline dehydrogenase [EC:1.1.99.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - ECTB - http://www.bacillondex.org/cv/KEGG - 15559 - diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] - E2.6.1.76 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00836 - - - serine--glyoxylate transaminase [EC:2.6.1.45] - E2.6.1.45 - http://www.bacillondex.org/evidenceType/IMPD - 15562 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00828+K13290 - - - 15565 - http://www.bacillondex.org/evidenceType/IMPD - ECTA - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K06718 - L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] - - - creatinase [EC:3.5.3.3] - E3.5.3.3 - http://www.kegg.jp/dbget-bin/www_bget?K08688 - 15568 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 15571 - glycine N-methyltransferase [EC:2.1.1.20] - http://www.kegg.jp/dbget-bin/www_bget?K00552 - GNMT - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 5-aminolevulinate synthase [EC:2.3.1.37] - 15574 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E2.3.1.37 - ALAS - http://www.kegg.jp/dbget-bin/www_bget?K00643 - - - http://www.kegg.jp/dbget-bin/www_bget?K00274 - http://www.bacillondex.org/evidenceType/IMPD - 15577 - monoamine oxidase [EC:1.4.3.4] - http://www.bacillondex.org/cv/KEGG - E1.4.3.4 - - - formylmethionine deformylase [EC:3.5.1.31] - DEF - http://www.kegg.jp/dbget-bin/www_bget?K01450 - 15580 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - METH - http://www.bacillondex.org/cv/KEGG - 5-methyltetrahydrofolate--homocysteine methyltransferase[EC:2.1.1.13] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00548 - E2.1.1.13 - 15583 - - - SMS - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00802 - spermine synthase [EC:2.5.1.22] - E2.5.1.22 - http://www.bacillondex.org/evidenceType/IMPD - 15586 - - - http://www.bacillondex.org/evidenceType/IMPD - AHCY - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01251 - adenosylhomocysteinase [EC:3.3.1.1] - E3.3.1.1 - 15589 - - - 15592 - 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] - MTAP - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00772 - http://www.bacillondex.org/evidenceType/IMPD - E2.4.2.28 - - - E4.4.1.14 - http://www.bacillondex.org/cv/KEGG - 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - 15595 - http://www.kegg.jp/dbget-bin/www_bget?K01762 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 15598 - http://www.bacillondex.org/cv/KEGG - E1.14.17.4 - aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] - http://www.kegg.jp/dbget-bin/www_bget?K05933 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00456 - 15601 - cysteine dioxygenase [EC:1.13.11.20] - http://www.bacillondex.org/cv/KEGG - E1.13.11.20 - CDO1 - - - http://www.kegg.jp/dbget-bin/www_bget?K05395 - cystine reductase [EC:1.8.1.6] - E1.8.1.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15604 - - - http://www.bacillondex.org/cv/KEGG - (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05884 - 15607 - E1.1.1.272 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15610 - http://www.kegg.jp/dbget-bin/www_bget?K10150 - E2.5.1.65 - O-phosphoserine sulfhydrylase [EC:2.5.1.65] - - - 15613 - DCYD - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05396 - D-cysteine desulfhydrase [EC:4.4.1.15] - - - E2.8.1.2 - http://www.bacillondex.org/cv/KEGG - 3-mercaptopyruvate sulfurtransferase [EC:2.8.1.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01011 - 15616 - - - http://www.bacillondex.org/cv/KEGG - METX - 15619 - http://www.bacillondex.org/evidenceType/IMPD - E2.3.1.31 - homoserine O-acetyltransferase [EC:2.3.1.31] - http://www.kegg.jp/dbget-bin/www_bget?K00641 - - - METY - 15622 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01740 - O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] - http://www.bacillondex.org/evidenceType/IMPD - E2.5.1.49 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12339 - cysteine synthase B [EC:2.5.1.47] - CYSM - http://www.bacillondex.org/cv/KEGG - 15625 - - - 15628 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01761 - E4.4.1.11 - http://www.bacillondex.org/evidenceType/IMPD - methionine-gamma-lyase [EC:4.4.1.11] - - - http://www.kegg.jp/dbget-bin/www_bget?K09880 - http://www.bacillondex.org/cv/KEGG - MTNC - ENOPH1 - http://www.bacillondex.org/evidenceType/IMPD - 15631 - enolase-phosphatase E1 [EC:3.1.3.77] - - - 15634 - http://www.bacillondex.org/cv/KEGG - E1.8.4.13 - http://www.bacillondex.org/evidenceType/IMPD - methionine (S)-S-oxide reductase [EC:1.8.4.13] - http://www.kegg.jp/dbget-bin/www_bget?K00388 - - - http://www.bacillondex.org/evidenceType/IMPD - 15637 - L-amino-acid oxidase [EC:1.4.3.2] - http://www.kegg.jp/dbget-bin/www_bget?K03334 - http://www.bacillondex.org/cv/KEGG - E1.4.3.2 - - - http://www.bacillondex.org/cv/KEGG - ACADSB - http://www.bacillondex.org/evidenceType/IMPD - short/branched chain acyl-CoA dehydrogenase [EC:1.3.99.12] - http://www.kegg.jp/dbget-bin/www_bget?K09478+K11410 - 15640 - - - http://www.bacillondex.org/cv/KEGG - ACDH - short/branched chain acyl-CoA dehydrogenase [EC:1.3.99.12] - http://www.bacillondex.org/evidenceType/IMPD - 15643 - http://www.kegg.jp/dbget-bin/www_bget?K09478+K11410 - - - http://www.kegg.jp/dbget-bin/www_bget?K05607 - http://www.bacillondex.org/evidenceType/IMPD - 15646 - E4.2.1.18 - http://www.bacillondex.org/cv/KEGG - methylglutaconyl-CoA hydratase [EC:4.2.1.18] - - - 15649 - http://www.bacillondex.org/evidenceType/IMPD - E6.4.1.4 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01967+K01968+K01969 - 3-methylcrotonyl-CoA carboxylase [EC:6.4.1.4] - - - E6.4.1.4A - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] - 15652 - http://www.kegg.jp/dbget-bin/www_bget?K01967+K01968+K01969 - - - http://www.bacillondex.org/cv/KEGG - 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] - E6.4.1.4B - http://www.kegg.jp/dbget-bin/www_bget?K01967+K01968+K01969 - 15655 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00186+K00187+K00188+K00189 - 15658 - 2-oxoisovalerate ferredoxin oxidoreductase, alpha subunit[EC:1.2.7.7] - VORA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 15661 - http://www.kegg.jp/dbget-bin/www_bget?K00186+K00187+K00188+K00189 - 2-oxoisovalerate ferredoxin oxidoreductase, beta subunit[EC:1.2.7.7] - VORB - http://www.bacillondex.org/cv/KEGG - - - 2-oxoisovalerate ferredoxin oxidoreductase, delta subunit[EC:1.2.7.7] - http://www.kegg.jp/dbget-bin/www_bget?K00186+K00187+K00188+K00189 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15664 - VORD - - - http://www.bacillondex.org/cv/KEGG - 2-oxoisovalerate ferredoxin oxidoreductase, gamma subunit[EC:1.2.7.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00186+K00187+K00188+K00189 - 15667 - VORG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00822 - E2.6.1.18 - beta-alanine--pyruvate transaminase [EC:2.6.1.18] - 15670 - - - AOX1 - http://www.bacillondex.org/evidenceType/IMPD - aldehyde oxidase [EC:1.2.3.1] - http://www.bacillondex.org/cv/KEGG - 15673 - http://www.kegg.jp/dbget-bin/www_bget?K00157 - E1.2.3.1 - - - 15676 - MUT - methylmalonyl-CoA mutase [EC:5.4.99.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01847+K01848+K01849+K11942 - - - http://www.bacillondex.org/cv/KEGG - E5.4.99.2A - 15679 - methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] - MCMA1 - http://www.kegg.jp/dbget-bin/www_bget?K01847+K01848+K01849+K11942 - http://www.bacillondex.org/evidenceType/IMPD - - - 15682 - E5.4.99.2B - MCMA2 - http://www.kegg.jp/dbget-bin/www_bget?K01847+K01848+K01849+K11942 - http://www.bacillondex.org/evidenceType/IMPD - methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01847+K01848+K01849+K11942 - methylmalonyl-CoA mutase [EC:5.4.99.2] - E5.4.99.2 - 15685 - http://www.bacillondex.org/cv/KEGG - - - E5.1.99.1 - http://www.kegg.jp/dbget-bin/www_bget?K05606 - methylmalonyl-CoA epimerase [EC:5.1.99.1] - 15688 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - GABT - E2.6.1.22 - http://www.bacillondex.org/evidenceType/IMPD - (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.22] - http://www.kegg.jp/dbget-bin/www_bget?K07250 - 15691 - http://www.bacillondex.org/cv/KEGG - - - 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] - E3.1.2.4 - http://www.kegg.jp/dbget-bin/www_bget?K05605 - http://www.bacillondex.org/evidenceType/IMPD - 15694 - http://www.bacillondex.org/cv/KEGG - - - E6.2.1.- - http://www.bacillondex.org/evidenceType/IMPD - 15697 - http://www.kegg.jp/dbget-bin/www_bget?K01913 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00155 - E1.2.1.- - 15700 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - E2.8.3.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01041 - 15703 - - - 15706 - http://www.bacillondex.org/evidenceType/IMPD - AVTA - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00835 - valine--pyruvate aminotransferase [EC:2.6.1.66] - - - CIMA - D-citramalate synthase [EC:2.3.1.182] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15709 - http://www.kegg.jp/dbget-bin/www_bget?K09011 - - - http://www.kegg.jp/dbget-bin/www_bget?K03918 - L-lysine 6-transaminase [EC:2.6.1.36] - LAT - http://www.bacillondex.org/cv/KEGG - 15712 - http://www.bacillondex.org/evidenceType/IMPD - E2.6.1.36 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00293 - 15715 - http://www.bacillondex.org/evidenceType/IMPD - E1.5.1.10 - saccharopine dehydrogenase (NADP+, L-glutamate forming)[EC:1.5.1.10] - - - saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00290 - 15718 - http://www.bacillondex.org/cv/KEGG - E1.5.1.7 - - - http://www.bacillondex.org/evidenceType/IMPD - 15721 - http://www.kegg.jp/dbget-bin/www_bget?K00291 - saccharopine dehydrogenase (NADP+, L-lysine forming) [EC:1.5.1.8] - http://www.bacillondex.org/cv/KEGG - E1.5.1.8 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00825+K05825 - 2-aminoadipate transaminase [EC:2.6.1.39] - E2.6.1.39 - 15724 - - - http://www.kegg.jp/dbget-bin/www_bget?K00825+K05825 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - LYSN - 15727 - 2-aminoadipate transaminase [EC:2.6.1.-] - - - aminoadipate-semialdehyde dehydrogenase [EC:1.2.1.31] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15730 - http://www.kegg.jp/dbget-bin/www_bget?K00142+K00143+K00144 - E1.2.1.31 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00142+K00143+K00144 - 15733 - aminoadipate-semialdehyde dehydrogenase large subunit [EC:1.2.1.31] - http://www.bacillondex.org/cv/KEGG - E1.2.1.31L - - - aminoadipate-semialdehyde dehydrogenase small subunit [EC:1.2.1.31] - http://www.kegg.jp/dbget-bin/www_bget?K00142+K00143+K00144 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15736 - E1.2.1.31S - - - http://www.bacillondex.org/cv/KEGG - E2.3.3.14 - http://www.kegg.jp/dbget-bin/www_bget?K01655 - http://www.bacillondex.org/evidenceType/IMPD - 15739 - homocitrate synthase [EC:2.3.3.14] - - - http://www.kegg.jp/dbget-bin/www_bget?K01705 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15742 - E4.2.1.36 - homoaconitate hydratase [EC:4.2.1.36] - - - homoisocitrate dehydrogenase [EC:1.1.1.87] - E1.1.1.87 - 15745 - http://www.kegg.jp/dbget-bin/www_bget?K05824 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.4.1.16 - diaminopimelate dehydrogenase [EC:1.4.1.16] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03340 - http://www.bacillondex.org/evidenceType/IMPD - 15748 - - - http://www.bacillondex.org/cv/KEGG - 15751 - http://www.kegg.jp/dbget-bin/www_bget?K00674 - DAPD - http://www.bacillondex.org/evidenceType/IMPD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase[EC:2.3.1.117] - - - 15754 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10206 - E2.6.1.83 - http://www.bacillondex.org/evidenceType/IMPD - LL-diaminopimelate aminotransferase [EC:2.6.1.83] - - - http://www.bacillondex.org/evidenceType/IMPD - acetyl-lysine deacetylase [EC:3.5.1.-] - http://www.bacillondex.org/cv/KEGG - 15757 - http://www.kegg.jp/dbget-bin/www_bget?K05831 - ARGE1 - - - http://www.bacillondex.org/evidenceType/IMPD - 15760 - http://www.bacillondex.org/cv/KEGG - LYSY - N-acetyl-gamma-aminoadipyl-phosphate reductase [EC:1.2.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K05829 - - - http://www.bacillondex.org/cv/KEGG - acetylornithine/acetyl-lysine aminotransferase [EC:2.6.1.11 2.6.1.-] - http://www.bacillondex.org/evidenceType/IMPD - LYSJ - 15763 - http://www.kegg.jp/dbget-bin/www_bget?K05830 - - - 15766 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - LYSW - http://www.kegg.jp/dbget-bin/www_bget?K05826 - lysine biosynthesis protein LysW - - - http://www.kegg.jp/dbget-bin/www_bget?K05828 - http://www.bacillondex.org/evidenceType/IMPD - LYSZ - 15769 - http://www.bacillondex.org/cv/KEGG - acetylaminoadipate kinase [EC:2.7.2.-] - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E1.5.1.9 - http://www.kegg.jp/dbget-bin/www_bget?K00292 - saccharopine dehydrogenase (NAD+, L-glutamate forming) [EC:1.5.1.9] - 15772 - - - http://www.bacillondex.org/cv/KEGG - L-pipecolate oxidase [EC:1.5.3.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00306 - E1.5.3.7 - 15775 - - - http://www.bacillondex.org/evidenceType/IMPD - 15778 - http://www.bacillondex.org/cv/KEGG - ASH1L - histone-lysine N-methyltransferase ASH1L [EC:2.1.1.43] - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - SUV39H - 15781 - histone-lysine N-methyltransferase SUV39H [EC:2.1.1.43] - http://www.bacillondex.org/cv/KEGG - CLR4 - - - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - EHMT - 15784 - euchromatic histone-lysine N-methyltransferase [EC:2.1.1.43] - - - http://www.bacillondex.org/cv/KEGG - SETDB - histone-lysine N-methyltransferase SETDB [EC:2.1.1.43] - 15787 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15790 - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - SET1 - SETD1 - histone-lysine N-methyltransferase SETD1 [EC:2.1.1.43] - - - http://www.bacillondex.org/evidenceType/IMPD - 15793 - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - SET2 - SETD2 - histone-lysine N-methyltransferase SETD2 [EC:2.1.1.43] - http://www.bacillondex.org/cv/KEGG - - - NSD1_2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15796 - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - histone-lysine N-methyltransferase NSD1/2 [EC:2.1.1.43] - - - http://www.bacillondex.org/cv/KEGG - WHSC1L1 - NSD3 - http://www.bacillondex.org/evidenceType/IMPD - histone-lysine N-methyltransferase NSD3 [EC:2.1.1.43] - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - 15799 - - - histone-lysine N-methyltransferase, H3 lysine-79 specific[EC:2.1.1.43] - http://www.bacillondex.org/evidenceType/IMPD - 15802 - DOT1 - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - DOT1L - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - histone-lysine N-methyltransferase SETD8 [EC:2.1.1.43] - SETD8 - 15805 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - histone-lysine N-methyltransferase SUV420H [EC:2.1.1.43] - 15808 - SUV420H - - - histone-lysine N-methyltransferase SETD7 [EC:2.1.1.43] - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - 15811 - SETD7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 15814 - SETMAR - histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] - http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 15817 - PLOD - E1.14.11.4 - http://www.kegg.jp/dbget-bin/www_bget?K00473 - http://www.bacillondex.org/cv/KEGG - procollagen-lysine,2-oxoglutarate 5-dioxygenase [EC:1.14.11.4] - http://www.bacillondex.org/evidenceType/IMPD - - - E6.3.2.27A - 15820 - http://www.kegg.jp/dbget-bin/www_bget?K03894+K03895 - IUCA - aerobactin synthetase subunit alpha [EC:6.3.2.27] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - aerobactin synthetase subunit beta [EC:6.3.2.27] - 15823 - http://www.kegg.jp/dbget-bin/www_bget?K03894+K03895 - IUCC - E6.3.2.27C - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - beta-lysine 5,6-aminomutase [EC:5.4.3.3] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01844 - 15826 - E5.4.3.3 - - - trimethyllysine dioxygenase [EC:1.14.11.8] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00474 - http://www.bacillondex.org/cv/KEGG - 15829 - E1.14.11.8 - - - http://www.kegg.jp/dbget-bin/www_bget?K01423 - E3.4.-.- - 15832 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00471 - E1.14.11.1 - http://www.bacillondex.org/cv/KEGG - gamma-butyrobetaine dioxygenase [EC:1.14.11.1] - http://www.bacillondex.org/evidenceType/IMPD - 15835 - - - 15838 - http://www.bacillondex.org/evidenceType/IMPD - E1.2.1.47 - http://www.kegg.jp/dbget-bin/www_bget?K00149 - 4-trimethylammoniobutyraldehyde dehydrogenase [EC:1.2.1.47] - http://www.bacillondex.org/cv/KEGG - - - acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] - http://www.bacillondex.org/evidenceType/IMPD - IUCB - 15841 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03896 - E2.3.1.102 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03897 - 15844 - IUCD - E1.14.13.59 - http://www.bacillondex.org/evidenceType/IMPD - lysine N6-hydroxylase [EC:1.14.13.59] - - - http://www.bacillondex.org/cv/KEGG - LDCC - CADA - 15847 - http://www.bacillondex.org/evidenceType/IMPD - lysine decarboxylase [EC:4.1.1.18] - E4.1.1.18 - http://www.kegg.jp/dbget-bin/www_bget?K01582 - - - http://www.kegg.jp/dbget-bin/www_bget?K12745 - CEFF - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - deacetoxycephalosporin-C hydroxylase [EC:1.14.11.26] - 15850 - - - http://www.bacillondex.org/evidenceType/IMPD - CEFEF - cephalosporin biosynthesis expandase/hydroxylase [EC:1.14.20.11.14.11.26] - 15853 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12746 - - - CEFE - deacetoxycephalosporin-C synthase [EC:1.14.20.1] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12744 - http://www.bacillondex.org/evidenceType/IMPD - 15856 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - hydroxymethyl cephem carbamoyltransferase [EC:2.1.3.-] - http://www.kegg.jp/dbget-bin/www_bget?K04128 - CMCH - 15859 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15862 - isopenicillin-N synthase [EC:1.21.3.1] - http://www.kegg.jp/dbget-bin/www_bget?K04126 - E1.21.3.1 - - - http://www.bacillondex.org/evidenceType/IMPD - 15865 - penicillin amidase [EC:3.5.1.11] - http://www.kegg.jp/dbget-bin/www_bget?K01434 - http://www.bacillondex.org/cv/KEGG - E3.5.1.11 - - - isopenicillin-N N-acyltransferase [EC:2.3.1.164] - http://www.kegg.jp/dbget-bin/www_bget?K10852 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15868 - E2.3.1.164 - - - http://www.bacillondex.org/cv/KEGG - isopenicillin-N epimerase [EC:5.1.1.17] - 15871 - http://www.kegg.jp/dbget-bin/www_bget?K04127 - http://www.bacillondex.org/evidenceType/IMPD - CEFD - - - N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase[EC:6.3.2.26] - PCBAB - http://www.kegg.jp/dbget-bin/www_bget?K12743 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15874 - - - http://www.kegg.jp/dbget-bin/www_bget?K12747 - 15877 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CEFG - deacetylcephalosporin-C acetyltransferase [EC:2.3.1.175] - - - GCA - glutaryl-7-aminocephalosporanic-acid acylase [EC:3.5.1.93] - http://www.kegg.jp/dbget-bin/www_bget?K12748 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15880 - - - http://www.bacillondex.org/cv/KEGG - 15883 - putrescine aminotransferase [EC:2.6.1.82] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K09251 - E2.6.1.82 - - - KAUB - 15886 - http://www.bacillondex.org/cv/KEGG - 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehydedehydrogenase [EC:1.2.1.54 1.2.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12254 - - - http://www.bacillondex.org/evidenceType/IMPD - SPUC - http://www.kegg.jp/dbget-bin/www_bget?K12256 - http://www.bacillondex.org/cv/KEGG - 15889 - putrescine aminotransferase [EC:2.6.1.-] - - - E3.5.1.54 - http://www.bacillondex.org/cv/KEGG - 15892 - http://www.bacillondex.org/evidenceType/IMPD - allophanate hydrolase [EC:3.5.1.54] - http://www.kegg.jp/dbget-bin/www_bget?K01457 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01478 - http://www.bacillondex.org/evidenceType/IMPD - 15895 - arginine deiminase [EC:3.5.3.6] - E3.5.3.6 - ARCA - - - urea carboxylase [EC:6.3.4.6] - 15898 - E6.3.4.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01941 - - - http://www.bacillondex.org/evidenceType/IMPD - 15901 - OCD - ornithine cyclodeaminase [EC:4.3.1.12] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01750 - E4.3.1.12 - - - http://www.kegg.jp/dbget-bin/www_bget?K00318 - PUTA - http://www.bacillondex.org/cv/KEGG - 15904 - http://www.bacillondex.org/evidenceType/IMPD - E1.5.99.8 - proline dehydrogenase [EC:1.5.99.8] - - - 15907 - D-proline reductase (dithiol) PrdA [EC:1.21.4.1] - http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796 - PRDA - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - D-proline reductase (dithiol) PrdB [EC:1.21.4.1] - PRDB - http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796 - http://www.bacillondex.org/cv/KEGG - 15910 - - - 15913 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796 - http://www.bacillondex.org/cv/KEGG - PRDD - D-proline reductase (dithiol) PrdD [EC:1.21.4.1] - - - http://www.bacillondex.org/cv/KEGG - PRDE - D-proline reductase (dithiol) PrdE [EC:1.21.4.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796 - 15916 - - - http://www.kegg.jp/dbget-bin/www_bget?K11394 - hydroxyproline oxidase [EC:1.5.-.-] - http://www.bacillondex.org/evidenceType/IMPD - 15919 - PRODH2 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - proline racemase [EC:5.1.1.4] - 15922 - E5.1.1.4 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01777 - - - 15925 - E1.14.11.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00472 - prolyl 4-hydroxylase [EC:1.14.11.2] - http://www.bacillondex.org/cv/KEGG - - - proline iminopeptidase [EC:3.4.11.5] - http://www.kegg.jp/dbget-bin/www_bget?K01259+K11142 - 15928 - PIP - E3.4.11.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01259+K11142 - 15931 - cytosol aminopeptidase [EC:3.4.11.1 3.4.11.5] - LAP3 - - - http://www.bacillondex.org/evidenceType/IMPD - 15934 - http://www.kegg.jp/dbget-bin/www_bget?K00316 - E1.5.99.6 - spermidine dehydrogenase [EC:1.5.99.6] - http://www.bacillondex.org/cv/KEGG - - - E3.4.13.3 - aminoacylhistidine dipeptidase [EC:3.4.13.3] - http://www.kegg.jp/dbget-bin/www_bget?K01270 - PEPD - 15937 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 15940 - creatinine amidohydrolase [EC:3.5.2.10] - http://www.bacillondex.org/evidenceType/IMPD - E3.5.2.10 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01470 - - - E2.7.3.3 - http://www.kegg.jp/dbget-bin/www_bget?K00934 - 15943 - arginine kinase [EC:2.7.3.3] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.5.1.19 - 15946 - D-nopaline dehydrogenase [EC:1.5.1.19] - http://www.kegg.jp/dbget-bin/www_bget?K00296 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 15949 - 4-hydroxyproline epimerase [EC:5.1.1.8] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E5.1.1.8 - http://www.kegg.jp/dbget-bin/www_bget?K12658 - - - creatine kinase [EC:2.7.3.2] - 15952 - E2.7.3.2 - http://www.kegg.jp/dbget-bin/www_bget?K00933 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00642 - http://www.bacillondex.org/cv/KEGG - 15955 - glutamate N-acetyltransferase [EC:2.3.1.35] - E2.3.1.35 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12253 - ARUI - http://www.bacillondex.org/cv/KEGG - 15958 - 5-guanidino-2-oxopentanoate decarboxylase [EC:4.1.1.75] - - - guanidinobutyrase [EC:3.5.3.7] - http://www.kegg.jp/dbget-bin/www_bget?K12255 - GBUA - 15961 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - N-methylhydantoinase A [EC:3.5.2.14] - http://www.kegg.jp/dbget-bin/www_bget?K01473+K01474 - HYUA - 15964 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K01473+K01474 - http://www.bacillondex.org/cv/KEGG - N-methylhydantoinase B [EC:3.5.2.14] - HYUB - http://www.bacillondex.org/evidenceType/IMPD - 15967 - - - arginine:pyruvate transaminase [EC:2.6.1.84] - http://www.kegg.jp/dbget-bin/www_bget?K12252 - 15970 - http://www.bacillondex.org/cv/KEGG - ARUH - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E3.5.1.4 - AMIE - 15973 - http://www.kegg.jp/dbget-bin/www_bget?K01426 - http://www.bacillondex.org/cv/KEGG - amidase [EC:3.5.1.4] - - - http://www.kegg.jp/dbget-bin/www_bget?K08687 - http://www.bacillondex.org/cv/KEGG - 15976 - E3.5.1.59 - http://www.bacillondex.org/evidenceType/IMPD - N-carbamoylsarcosine amidase [EC:3.5.1.59] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12251 - 15979 - http://www.bacillondex.org/evidenceType/IMPD - N-carbamoylputrescine amidase [EC:3.5.1.53] - AGUB - - - ASTA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 15982 - arginine N-succinyltransferase [EC:2.3.1.109] - http://www.kegg.jp/dbget-bin/www_bget?K00673 - - - http://www.kegg.jp/dbget-bin/www_bget?K10536 - http://www.bacillondex.org/evidenceType/IMPD - E3.5.3.12 - 15985 - http://www.bacillondex.org/cv/KEGG - agmatine deiminase [EC:3.5.3.12] - - - ASTD - http://www.bacillondex.org/cv/KEGG - succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06447 - 15988 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05526 - 15991 - http://www.bacillondex.org/evidenceType/IMPD - ASTE - succinylglutamate desuccinylase [EC:3.5.1.96] - - - ASTB - http://www.kegg.jp/dbget-bin/www_bget?K01484 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 15994 - succinylarginine dihydrolase [EC:3.5.3.23] - - - ASTC - http://www.bacillondex.org/evidenceType/IMPD - 15997 - succinylornithine aminotransferase [EC:2.6.1.81] - http://www.kegg.jp/dbget-bin/www_bget?K00840 - http://www.bacillondex.org/cv/KEGG - - - PUUA - http://www.bacillondex.org/evidenceType/IMPD - gamma-glutamylputrescine synthase [EC:6.3.1.11] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09470 - 16000 - - - PUUB - 16003 - ORDL - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09471 - gamma-glutamylputrescine oxidase [EC:1.4.3.-] - - - http://www.bacillondex.org/cv/KEGG - PUUD - http://www.bacillondex.org/evidenceType/IMPD - gamma-glutamyl-gamma-aminobutyrate hydrolase [EC:3.5.1.94] - 16006 - http://www.kegg.jp/dbget-bin/www_bget?K09473 - - - http://www.kegg.jp/dbget-bin/www_bget?K03343 - http://www.bacillondex.org/evidenceType/IMPD - putrescine oxidase [EC:1.4.3.10] - http://www.bacillondex.org/cv/KEGG - E1.4.3.10 - 16009 - - - SPEF - SPEC - http://www.bacillondex.org/evidenceType/IMPD - ornithine decarboxylase [EC:4.1.1.17] - http://www.bacillondex.org/cv/KEGG - ODC1 - 16012 - http://www.kegg.jp/dbget-bin/www_bget?K01581 - E4.1.1.17 - - - ABP1 - diamine oxidase [EC:1.4.3.22] - 16015 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11182 - AOC1 - - - 16018 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E2.1.1.8 - HNMT - histamine N-methyltransferase [EC:2.1.1.8] - http://www.kegg.jp/dbget-bin/www_bget?K00546 - - - 16021 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - formimidoylglutamate deiminase [EC:3.5.3.13] - http://www.kegg.jp/dbget-bin/www_bget?K05603 - E3.5.3.13 - - - 16024 - http://www.bacillondex.org/evidenceType/IMPD - E1.14.13.- - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00492 - - - http://www.bacillondex.org/cv/KEGG - glutamate formiminotransferase [EC:2.1.2.5] - http://www.bacillondex.org/evidenceType/IMPD - 16027 - http://www.kegg.jp/dbget-bin/www_bget?K00603 - E2.1.2.5 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01458 - E3.5.1.68 - 16030 - N-formylglutamate deformylase [EC:3.5.1.68] - - - DDC - http://www.kegg.jp/dbget-bin/www_bget?K01593 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16033 - aromatic-L-amino-acid decarboxylase [EC:4.1.1.28] - E4.1.1.28 - - - thyroid peroxidase [EC:1.11.1.8] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00431 - TPO - http://www.bacillondex.org/cv/KEGG - 16036 - - - http://www.kegg.jp/dbget-bin/www_bget?K01592 - E4.1.1.25 - http://www.bacillondex.org/cv/KEGG - 16039 - http://www.bacillondex.org/evidenceType/IMPD - tyrosine decarboxylase [EC:4.1.1.25] - - - http://www.bacillondex.org/cv/KEGG - acylpyruvate hydrolase [EC:3.7.1.5] - 16042 - E3.7.1.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01557 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00450 - gentisate 1,2-dioxygenase [EC:1.13.11.4] - 16045 - E1.13.11.4 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - E5.2.1.4 - http://www.kegg.jp/dbget-bin/www_bget?K01801 - 16048 - http://www.bacillondex.org/cv/KEGG - maleylpyruvate isomerase [EC:5.2.1.4] - - - http://www.kegg.jp/dbget-bin/www_bget?K00545 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - COMT - catechol O-methyltransferase [EC:2.1.1.6] - 16051 - - - http://www.bacillondex.org/cv/KEGG - 16054 - E2.1.1.28 - http://www.bacillondex.org/evidenceType/IMPD - PNMT - phenylethanolamine N-methyltransferase [EC:2.1.1.28] - http://www.kegg.jp/dbget-bin/www_bget?K00553 - - - http://www.kegg.jp/dbget-bin/www_bget?K00503 - dopamine beta-monooxygenase [EC:1.14.17.1] - http://www.bacillondex.org/evidenceType/IMPD - E1.14.17.1 - http://www.bacillondex.org/cv/KEGG - 16057 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01827 - dopachrome tautomerase [EC:5.3.3.12] - 16060 - http://www.bacillondex.org/cv/KEGG - E5.3.3.12 - DCT - - - http://www.kegg.jp/dbget-bin/www_bget?K01555 - 16063 - FAH - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - fumarylacetoacetase [EC:3.7.1.2] - E3.7.1.2 - - - http://www.bacillondex.org/cv/KEGG - 16066 - http://www.bacillondex.org/evidenceType/IMPD - E1.13.12.- - http://www.kegg.jp/dbget-bin/www_bget?K00468 - - - HPAH - 16069 - http://www.kegg.jp/dbget-bin/www_bget?K02509 - 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 16072 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase /2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] - http://www.kegg.jp/dbget-bin/www_bget?K05921 - HPAG - - - TYNA - E1.4.3.21 - http://www.kegg.jp/dbget-bin/www_bget?K00276 - 16075 - primary-amine oxidase [EC:1.4.3.21] - AOC2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - AOC3 - - - E1.14.18.1 - 16078 - tyrosinase [EC:1.14.18.1] - http://www.kegg.jp/dbget-bin/www_bget?K00505 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E1.10.3.1 - http://www.kegg.jp/dbget-bin/www_bget?K00422 - polyphenol oxidase [EC:1.10.3.1] - 16081 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 16084 - http://www.kegg.jp/dbget-bin/www_bget?K00506 - http://www.bacillondex.org/cv/KEGG - tyrosinase-related protein 1 [EC:1.14.18.-] - TYRP1 - - - http://www.kegg.jp/dbget-bin/www_bget?K00055 - 16087 - E1.1.1.90 - http://www.bacillondex.org/cv/KEGG - aryl-alcohol dehydrogenase [EC:1.1.1.90] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - HPAE - E1.2.1.60 - http://www.kegg.jp/dbget-bin/www_bget?K00151 - 16090 - http://www.bacillondex.org/evidenceType/IMPD - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase[EC:1.2.1.60] - - - tyrosine phenol-lyase [EC:4.1.99.2] - E4.1.99.2 - http://www.kegg.jp/dbget-bin/www_bget?K01668 - 16093 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] - http://www.bacillondex.org/cv/KEGG - 16096 - E5.3.3.10 - http://www.kegg.jp/dbget-bin/www_bget?K01826 - HPAF - http://www.bacillondex.org/evidenceType/IMPD - - - E4.1.1.68 - 16099 - http://www.kegg.jp/dbget-bin/www_bget?K01614+K05921 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase [EC:4.1.1.68] - - - http://www.bacillondex.org/cv/KEGG - 16102 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K02510 - http://www.bacillondex.org/evidenceType/IMPD - HPAI - - - TH - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00501 - tyrosine 3-monooxygenase [EC:1.14.16.2] - 16105 - http://www.bacillondex.org/cv/KEGG - - - E5.2.1.2 - 16108 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01800 - MAIA - maleylacetoacetate isomerase [EC:5.2.1.2] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00455 - HPAD - E1.13.11.15 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] - http://www.bacillondex.org/evidenceType/IMPD - 16111 - - - 16114 - http://www.bacillondex.org/cv/KEGG - HMGA - http://www.kegg.jp/dbget-bin/www_bget?K00451 - homogentisate 1,2-dioxygenase [EC:1.13.11.5] - E1.13.11.5 - http://www.bacillondex.org/evidenceType/IMPD - - - E2.3.1.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00680 - 16117 - - - http://www.kegg.jp/dbget-bin/www_bget?K07253 - 16120 - http://www.bacillondex.org/evidenceType/IMPD - phenylpyruvate tautomerase [EC:5.3.2.1] - http://www.bacillondex.org/cv/KEGG - MIF - - - phenylpyruvate decarboxylase [EC:4.1.1.-] - http://www.bacillondex.org/cv/KEGG - 16123 - http://www.kegg.jp/dbget-bin/www_bget?K12732 - ARO10 - http://www.bacillondex.org/evidenceType/IMPD - - - phenylalanine-4-hydroxylase [EC:1.14.16.1] - http://www.kegg.jp/dbget-bin/www_bget?K00500 - PAH - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16126 - PHHA - - - 16129 - FEAB - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - phenylacetaldehyde dehydrogenase [EC:1.2.1.39] - http://www.kegg.jp/dbget-bin/www_bget?K00146 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00285 - DADA - http://www.bacillondex.org/cv/KEGG - D-amino-acid dehydrogenase [EC:1.4.99.1] - 16132 - - - http://www.kegg.jp/dbget-bin/www_bget?K00529+K05708+K05709+K05710 - 16135 - ferredoxin--NAD+ reductase [EC:1.18.1.3] - HCAD - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - HCAA1 - large terminal subunit of phenylpropionate dioxygenase[EC:1.14.12.19] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00529+K05708+K05709+K05710 - 16138 - HCAE - - - HCAF - http://www.bacillondex.org/evidenceType/IMPD - HCAA2 - 16141 - http://www.bacillondex.org/cv/KEGG - small terminal subunit of phenylpropionate dioxygenase[EC:1.14.12.19] - http://www.kegg.jp/dbget-bin/www_bget?K00529+K05708+K05709+K05710 - - - HCAC - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ferredoxin subunit of phenylpropionate dioxygenase - 16144 - http://www.kegg.jp/dbget-bin/www_bget?K00529+K05708+K05709+K05710 - - - peroxidase [EC:1.11.1.7] - 16147 - E1.11.1.7 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00430 - - - http://www.bacillondex.org/cv/KEGG - phenylacetate 2-hydroxylase [EC:1.14.13.-] - http://www.kegg.jp/dbget-bin/www_bget?K10437 - 16150 - http://www.bacillondex.org/evidenceType/IMPD - PHACA - - - http://www.kegg.jp/dbget-bin/www_bget?K01666 - E4.1.3.39 - MHPE - 16153 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] - - - http://www.kegg.jp/dbget-bin/www_bget?K01912 - PAAK - 16156 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E6.2.1.30 - phenylacetate-CoA ligase [EC:6.2.1.30] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00270 - PDH - http://www.bacillondex.org/evidenceType/IMPD - phenylalanine dehydrogenase [EC:1.4.1.20] - 16159 - - - E4.3.1.24 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - phenylalanine ammonia-lyase [EC:4.3.1.24] - http://www.kegg.jp/dbget-bin/www_bget?K10775 - 16162 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16165 - http://www.kegg.jp/dbget-bin/www_bget?K05712 - MHPA - 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.-] - - - http://www.bacillondex.org/evidenceType/IMPD - MHPB - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05713 - 16168 - 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] - - - MHPC - http://www.bacillondex.org/cv/KEGG - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase [EC:3.7.1.-] - 16171 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05714 - - - http://www.bacillondex.org/cv/KEGG - 2-enoate reductase [EC:1.3.1.31] - 16174 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10797 - E1.3.1.31 - - - http://www.kegg.jp/dbget-bin/www_bget?K05711 - http://www.bacillondex.org/evidenceType/IMPD - 16177 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase [EC:1.3.1.-] - http://www.bacillondex.org/cv/KEGG - HCAB - - - http://www.kegg.jp/dbget-bin/www_bget?K02554 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2-keto-4-pentenoate hydratase [EC:4.2.1.80] - 16180 - MHPD - - - http://www.bacillondex.org/cv/KEGG - hippurate hydrolase [EC:3.5.1.32] - http://www.kegg.jp/dbget-bin/www_bget?K01451 - http://www.bacillondex.org/evidenceType/IMPD - HIPO - 16183 - E3.5.1.32 - - - http://www.bacillondex.org/cv/KEGG - 16186 - trans-cinnamate 4-monooxygenase [EC:1.14.13.11] - http://www.bacillondex.org/evidenceType/IMPD - CYP73A - http://www.kegg.jp/dbget-bin/www_bget?K00487 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01061 - carboxymethylenebutenolidase [EC:3.1.1.45] - http://www.bacillondex.org/cv/KEGG - E3.1.1.45 - 16189 - - - http://www.bacillondex.org/evidenceType/IMPD - E5.5.1.7 - 16192 - chloromuconate cycloisomerase [EC:5.5.1.7] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01860 - - - 16195 - E1.1.-.- - http://www.kegg.jp/dbget-bin/www_bget?K00120 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.14.12.- - http://www.bacillondex.org/cv/KEGG - 16198 - http://www.kegg.jp/dbget-bin/www_bget?K03384 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - catechol 1,2-dioxygenase [EC:1.13.11.1] - E1.13.11.1 - 16201 - CATA - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03381 - - - 16204 - maleylacetate reductase [EC:1.3.1.32] - E1.3.1.32 - http://www.kegg.jp/dbget-bin/www_bget?K00217 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 16207 - aryldialkylphosphatase [EC:3.1.8.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01140 - E3.1.8.1 - - - http://www.kegg.jp/dbget-bin/www_bget?K05300 - E1.4.-.- - 16210 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.13.11.39 - biphenyl-2,3-diol 1,2-dioxygenase [EC:1.13.11.39] - http://www.kegg.jp/dbget-bin/www_bget?K00462 - 16213 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 16216 - phenol 2-monooxygenase [EC:1.14.13.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E1.14.13.7 - http://www.kegg.jp/dbget-bin/www_bget?K03380 - - - E3.8.1.5 - 16219 - haloalkane dehalogenase [EC:3.8.1.5] - http://www.kegg.jp/dbget-bin/www_bget?K01563 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - DHAA - - - http://www.kegg.jp/dbget-bin/www_bget?K10216 - 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] - E3.7.1.9 - 16222 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01607 - 16225 - PCAC - http://www.bacillondex.org/cv/KEGG - 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] - E4.1.1.44 - - - http://www.kegg.jp/dbget-bin/www_bget?K01857 - E5.5.1.2 - PCAB - 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] - http://www.bacillondex.org/cv/KEGG - 16228 - http://www.bacillondex.org/evidenceType/IMPD - - - 16231 - E1.14.99.- - http://www.kegg.jp/dbget-bin/www_bget?K00516 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 16234 - E1.13.11.2 - http://www.kegg.jp/dbget-bin/www_bget?K00446 - catechol 2,3-dioxygenase [EC:1.13.11.2] - http://www.bacillondex.org/evidenceType/IMPD - - - E1.2.1.28 - http://www.bacillondex.org/evidenceType/IMPD - XYLC - benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] - 16237 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00141 - - - 4-oxalocrotonate decarboxylase [EC:4.1.1.77] - http://www.bacillondex.org/cv/KEGG - E4.1.1.77 - http://www.kegg.jp/dbget-bin/www_bget?K01617 - http://www.bacillondex.org/evidenceType/IMPD - 16240 - - - http://www.bacillondex.org/cv/KEGG - muconolactone D-isomerase [EC:5.3.3.4] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03464 - E5.3.3.4 - 16243 - CATC - - - 16246 - http://www.bacillondex.org/cv/KEGG - muconate cycloisomerase [EC:5.5.1.1] - http://www.bacillondex.org/evidenceType/IMPD - E5.5.1.1 - http://www.kegg.jp/dbget-bin/www_bget?K01856 - - - 3-oxoadipate enol-lactonase [EC:3.1.1.24] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01055 - http://www.bacillondex.org/cv/KEGG - E3.1.1.24 - 16249 - PCAD - - - 16252 - http://www.kegg.jp/dbget-bin/www_bget?K10217 - http://www.bacillondex.org/evidenceType/IMPD - aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32] - http://www.bacillondex.org/cv/KEGG - E1.2.1.32 - - - E1.2.1.45 - http://www.bacillondex.org/cv/KEGG - 16255 - http://www.bacillondex.org/evidenceType/IMPD - LIGC - http://www.kegg.jp/dbget-bin/www_bget?K10219 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase[EC:1.2.1.45] - - - http://www.kegg.jp/dbget-bin/www_bget?K01559 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16258 - E3.7.1.- - - - http://www.bacillondex.org/evidenceType/IMPD - E1.13.11.37 - hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37] - 16261 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04098 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10221 - 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] - http://www.bacillondex.org/cv/KEGG - E3.1.1.57 - LIGI - 16264 - - - 16267 - 4-oxalmesaconate hydratase [EC:4.2.1.83] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - LIGJ - http://www.kegg.jp/dbget-bin/www_bget?K10220 - E4.2.1.83 - - - http://www.kegg.jp/dbget-bin/www_bget?K04100+K04101 - http://www.bacillondex.org/cv/KEGG - LIGA - http://www.bacillondex.org/evidenceType/IMPD - 16270 - E1.13.11.8A - protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8] - - - http://www.bacillondex.org/evidenceType/IMPD - protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] - 16273 - http://www.bacillondex.org/cv/KEGG - E1.13.11.8B - LIGB - http://www.kegg.jp/dbget-bin/www_bget?K04100+K04101 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16276 - E1.3.1.25 - http://www.kegg.jp/dbget-bin/www_bget?K05783 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase[EC:1.3.1.25] - BEND - - - http://www.kegg.jp/dbget-bin/www_bget?K00481 - 16279 - POBA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] - E1.14.13.2 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01726 - E4.2.1.- - http://www.bacillondex.org/evidenceType/IMPD - 16282 - - - E4.1.3.17 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] - 16285 - LIGK - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10218 - - - PCAI - 16288 - E2.8.3.6A - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] - http://www.kegg.jp/dbget-bin/www_bget?K01031+K01032 - - - 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E2.8.3.6B - 16291 - PCAJ - http://www.kegg.jp/dbget-bin/www_bget?K01031+K01032 - - - benzoylformate decarboxylase [EC:4.1.1.7] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - MDLC - E4.1.1.7 - http://www.kegg.jp/dbget-bin/www_bget?K01576 - 16294 - - - http://www.kegg.jp/dbget-bin/www_bget?K00119 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16297 - E1.1.99.- - - - E5.1.2.2 - mandelate racemase [EC:5.1.2.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01781 - http://www.bacillondex.org/cv/KEGG - 16300 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E1.14.13.12 - http://www.kegg.jp/dbget-bin/www_bget?K07824 - 16303 - benzoate 4-monooxygenase [EC:1.14.13.12] - - - http://www.kegg.jp/dbget-bin/www_bget?K00448+K00449 - PCAG - protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] - 16306 - E1.13.11.3A - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] - http://www.bacillondex.org/evidenceType/IMPD - PCAH - 16309 - E1.13.11.3B - http://www.kegg.jp/dbget-bin/www_bget?K00448+K00449 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00486 - http://www.bacillondex.org/evidenceType/IMPD - 16312 - E1.14.13.9 - kynurenine 3-monooxygenase [EC:1.14.13.9] - http://www.bacillondex.org/cv/KEGG - - - E3.7.1.3 - http://www.bacillondex.org/cv/KEGG - 16315 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01556 - kynureninase [EC:3.7.1.3] - - - 16318 - 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] - http://www.kegg.jp/dbget-bin/www_bget?K00452 - E1.13.11.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - HAAO - - - http://www.kegg.jp/dbget-bin/www_bget?K01432 - http://www.bacillondex.org/evidenceType/IMPD - AFMID - http://www.bacillondex.org/cv/KEGG - arylformamidase [EC:3.5.1.9] - 16321 - - - TPH - http://www.kegg.jp/dbget-bin/www_bget?K00502 - http://www.bacillondex.org/evidenceType/IMPD - 16324 - tryptophan 5-monooxygenase [EC:1.14.16.4] - E1.14.16.4 - http://www.bacillondex.org/cv/KEGG - - - E4.1.99.1 - tryptophanase [EC:4.1.99.1] - http://www.bacillondex.org/evidenceType/IMPD - TNAA - http://www.kegg.jp/dbget-bin/www_bget?K01667 - http://www.bacillondex.org/cv/KEGG - 16327 - - - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 71, subfamily A, polypeptide 13(indoleacetaldoxime dehydratase) [EC:4.99.1.6] - CYP71A13 - 16330 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11868 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.14.16.- - http://www.kegg.jp/dbget-bin/www_bget?K03393 - http://www.bacillondex.org/cv/KEGG - 16333 - aromatic amino acid hydroxylase [EC:1.14.16.-] - - - 16336 - YUCCA - YUCCA family monooxygenase [EC:1.14.13.-] - http://www.kegg.jp/dbget-bin/www_bget?K11816 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 16339 - http://www.kegg.jp/dbget-bin/www_bget?K11819 - ROOTY/SUPERROOT1 [EC:4.4.1.-] - RTY - http://www.bacillondex.org/evidenceType/IMPD - SUR1 - - - 16342 - cytochrome P450, family 83, subfamily B, polypeptide 1 [EC:1.14.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K11818 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - CYP83B1 - - - INDO - http://www.kegg.jp/dbget-bin/www_bget?K00463 - indoleamine 2,3-dioxygenase [EC:1.13.11.52] - 16345 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K03392 - ACMSD - aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] - 16348 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E4.1.1.45 - - - indolepyruvate decarboxylase [EC:4.1.1.74] - http://www.kegg.jp/dbget-bin/www_bget?K04103 - E4.1.1.74 - IPDC - http://www.bacillondex.org/evidenceType/IMPD - 16351 - http://www.bacillondex.org/cv/KEGG - - - E2.1.1.4 - ASMT - http://www.kegg.jp/dbget-bin/www_bget?K00543 - acetylserotonin N-methyltransferase [EC:2.1.1.4] - 16354 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - arylalkylamine N-acetyltransferase [EC:2.3.1.87] - http://www.bacillondex.org/evidenceType/IMPD - AANAT - http://www.kegg.jp/dbget-bin/www_bget?K00669 - 16357 - E2.3.1.87 - http://www.bacillondex.org/cv/KEGG - - - 16360 - http://www.kegg.jp/dbget-bin/www_bget?K11821 - desulfoglucosinolate sulfotransferase A/B/C [EC:2.8.2.-] - http://www.bacillondex.org/evidenceType/IMPD - ST5A_B_C - http://www.bacillondex.org/cv/KEGG - - - 16363 - N-hydroxythioamide S-beta-glucosyltransferase [EC:2.4.1.195] - http://www.kegg.jp/dbget-bin/www_bget?K11820 - UGT74B1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - CYP79B2 - http://www.bacillondex.org/cv/KEGG - 16366 - http://www.kegg.jp/dbget-bin/www_bget?K11812+K11813 - cytochrome P450, family 79, subfamily B, polypeptide 2[EC:1.14.13.-] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 16369 - http://www.kegg.jp/dbget-bin/www_bget?K11812+K11813 - http://www.bacillondex.org/cv/KEGG - CYP79B3 - cytochrome P450, family 79, subfamily B, polypeptide 3[EC:1.14.13.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K00562 - amine N-methyltransferase [EC:2.1.1.49] - http://www.bacillondex.org/cv/KEGG - E2.1.1.49 - http://www.bacillondex.org/evidenceType/IMPD - 16372 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01721 - http://www.bacillondex.org/evidenceType/IMPD - E4.2.1.84 - nitrile hydratase [EC:4.2.1.84] - 16375 - - - 16378 - http://www.bacillondex.org/cv/KEGG - E3.5.5.1 - nitrilase [EC:3.5.5.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01501 - - - http://www.kegg.jp/dbget-bin/www_bget?K01237 - 16381 - E3.2.1.147 - myrosinase [EC:3.2.1.147] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 16384 - http://www.bacillondex.org/evidenceType/IMPD - AAO1 - indole-3-acetaldehyde oxidase [EC:1.2.3.7] - http://www.kegg.jp/dbget-bin/www_bget?K11817 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00816 - kynurenine-oxoglutarate transaminase [EC:2.6.1.7] - http://www.bacillondex.org/cv/KEGG - E2.6.1.7 - 16387 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00466 - http://www.bacillondex.org/cv/KEGG - tryptophan 2-monooxygenase [EC:1.13.12.3] - 16390 - http://www.bacillondex.org/evidenceType/IMPD - E1.13.12.3 - - - aromatic-amino-acid transaminase [EC:2.6.1.57] - http://www.bacillondex.org/evidenceType/IMPD - TYRB - 16393 - http://www.kegg.jp/dbget-bin/www_bget?K00832 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - aromatic amino acid aminotransferase I [EC:2.6.1.57] - ARO8 - 16396 - - - 16399 - aromatic amino acid aminotransferase II [EC:2.6.1.57] - ARO9 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - TYR1 - http://www.kegg.jp/dbget-bin/www_bget?K00211 - 16402 - E1.3.1.13 - prephenate dehydrogenase (NADP+) [EC:1.3.1.13] - - - K11646 - http://www.kegg.jp/dbget-bin/www_bget?K11646 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - dehydroquinate synthase II [EC:1.4.1.-] - 16405 - - - http://www.kegg.jp/dbget-bin/www_bget?K09483 - QUIC - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3-dehydroshikimate dehydratase [EC:4.2.1.-] - 16408 - - - E1.1.99.25 - quinate dehydrogenase (pyrroloquinoline-quinone) [EC:1.1.99.25] - 16411 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05358 - QUIA - - - QUIB - QA-3 - 16414 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - quinate dehydrogenase [EC:1.1.1.24] - http://www.kegg.jp/dbget-bin/www_bget?K09484 - - - http://www.bacillondex.org/evidenceType/IMPD - 16417 - http://www.kegg.jp/dbget-bin/www_bget?K11645 - K11645 - http://www.bacillondex.org/cv/KEGG - 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid synthase[EC:4.1.2.-] - - - http://www.bacillondex.org/evidenceType/IMPD - NOVL - 16420 - http://www.kegg.jp/dbget-bin/www_bget?K12709 - http://www.bacillondex.org/cv/KEGG - novobiocin biosynthesis protein NovL - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16423 - http://www.kegg.jp/dbget-bin/www_bget?K12706 - NOVC - novobiocin biosynthesis protein NovC - - - http://www.kegg.jp/dbget-bin/www_bget?K12705 - 16426 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - NOVO - novobiocin biosynthesis protein NovO - - - novobiocin biosynthesis protein NovJ - http://www.bacillondex.org/evidenceType/IMPD - 16429 - http://www.bacillondex.org/cv/KEGG - NOVJ - http://www.kegg.jp/dbget-bin/www_bget?K12703 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - NOVI - http://www.kegg.jp/dbget-bin/www_bget?K12702 - novobiocin biosynthesis protein NovI - 16432 - - - http://www.kegg.jp/dbget-bin/www_bget?K12701 - http://www.bacillondex.org/cv/KEGG - NOVH - novobiocin biosynthesis protein NovH - http://www.bacillondex.org/evidenceType/IMPD - 16435 - - - NOVR - http://www.kegg.jp/dbget-bin/www_bget?K12708 - 16438 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - novobiocin biosynthesis protein NovR - - - coumermycin A biosynthesis protein CouN2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12728 - 16441 - COUN2 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12725 - http://www.bacillondex.org/evidenceType/IMPD - coumermycin A biosynthesis protein CouL - 16444 - COUL - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12727 - coumermycin A biosynthesis protein CouP - 16447 - http://www.bacillondex.org/evidenceType/IMPD - COUP - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CLON6 - http://www.kegg.jp/dbget-bin/www_bget?K12722 - 16450 - clorobiocin biosynthesis protein CloN6 - - - 16453 - http://www.bacillondex.org/evidenceType/IMPD - novobiocin biosynthesis protein NovN - http://www.kegg.jp/dbget-bin/www_bget?K12713 - NOVN - http://www.bacillondex.org/cv/KEGG - - - CLOHAL - http://www.bacillondex.org/evidenceType/IMPD - 16456 - clorobiocin biosynthesis protein Clo-hal - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12714 - - - CLOU - http://www.kegg.jp/dbget-bin/www_bget?K12716 - clorobiocin biosynthesis protein CloU - http://www.bacillondex.org/evidenceType/IMPD - 16459 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 16462 - http://www.kegg.jp/dbget-bin/www_bget?K12717 - clorobiocin biosynthesis protein CloM - http://www.bacillondex.org/evidenceType/IMPD - CLOM - - - http://www.bacillondex.org/evidenceType/IMPD - clorobiocin biosynthesis protein CloL - CLOL - http://www.kegg.jp/dbget-bin/www_bget?K12715 - http://www.bacillondex.org/cv/KEGG - 16465 - - - 16468 - http://www.kegg.jp/dbget-bin/www_bget?K12718 - http://www.bacillondex.org/evidenceType/IMPD - CLOP - clorobiocin biosynthesis protein CloP - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - clorobiocin biosynthesis protein CloN3 - http://www.kegg.jp/dbget-bin/www_bget?K12721 - 16471 - http://www.bacillondex.org/evidenceType/IMPD - CLON3 - - - http://www.kegg.jp/dbget-bin/www_bget?K12724 - 16474 - CLON7 - clorobiocin biosynthesis protein CloN7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - novobiocin biosynthesis protein NovM - NOVM - 16477 - http://www.kegg.jp/dbget-bin/www_bget?K12711 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 16480 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12712 - novobiocin biosynthesis protein NovP - NOVP - - - cyclohexadienyl dehydrogenase [EC:1.3.1.43] - http://www.kegg.jp/dbget-bin/www_bget?K00220 - TYRC - E1.3.1.43 - http://www.bacillondex.org/evidenceType/IMPD - 16483 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12707 - NOVQ - 16486 - novobiocin biosynthesis protein NovQ - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 16489 - http://www.bacillondex.org/evidenceType/IMPD - clorobiocin biosynthesis protein CloN4 - CLON4 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12719 - - - aminobutyraldehyde dehydrogenase [EC:1.2.1.19] - 16492 - E1.2.1.19 - http://www.kegg.jp/dbget-bin/www_bget?K00137 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 16495 - MLYCD - malonyl-CoA decarboxylase [EC:4.1.1.9] - http://www.kegg.jp/dbget-bin/www_bget?K01578 - E4.1.1.9 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 16498 - CNDP1 - http://www.bacillondex.org/evidenceType/IMPD - beta-Ala-His dipeptidase [EC:3.4.13.20] - http://www.kegg.jp/dbget-bin/www_bget?K05604 - - - http://www.bacillondex.org/evidenceType/IMPD - 16501 - taurine-pyruvate aminotransferase [EC:2.6.1.77] - http://www.bacillondex.org/cv/KEGG - E2.6.1.77 - http://www.kegg.jp/dbget-bin/www_bget?K03851 - - - 16504 - http://www.bacillondex.org/cv/KEGG - sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] - E2.3.3.15 - http://www.kegg.jp/dbget-bin/www_bget?K03852 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07255+K07256 - http://www.bacillondex.org/evidenceType/IMPD - 16507 - taurine dehydrogenase small subunit [EC:1.4.2.-] - TAUX - - - http://www.kegg.jp/dbget-bin/www_bget?K07255+K07256 - TAUY - http://www.bacillondex.org/cv/KEGG - taurine dehydrogenase large subunit [EC:1.4.2.-] - http://www.bacillondex.org/evidenceType/IMPD - 16510 - - - http://www.kegg.jp/dbget-bin/www_bget?K10712 - http://www.bacillondex.org/evidenceType/IMPD - cysteamine dioxygenase [EC:1.13.11.19] - ADO - http://www.bacillondex.org/cv/KEGG - E1.13.11.19 - 16513 - - - http://www.kegg.jp/dbget-bin/www_bget?K05888 - E1.1.2.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16516 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - taurine dioxygenase [EC:1.14.11.17] - http://www.kegg.jp/dbget-bin/www_bget?K03119 - E1.14.11.17 - 16519 - TAUD - - - bile acid-CoA:amino acid N-acyltransferase [EC:2.3.1.65 3.1.2.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16522 - BAAT - http://www.kegg.jp/dbget-bin/www_bget?K00659 - - - http://www.bacillondex.org/evidenceType/IMPD - 16525 - PHNW - http://www.bacillondex.org/cv/KEGG - 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] - http://www.kegg.jp/dbget-bin/www_bget?K03430 - - - http://www.bacillondex.org/cv/KEGG - PHPI - http://www.bacillondex.org/evidenceType/IMPD - 16528 - http://www.kegg.jp/dbget-bin/www_bget?K12909 - carboxyphosphoenolpyruvate mutase - - - http://www.kegg.jp/dbget-bin/www_bget?K12910 - http://www.bacillondex.org/cv/KEGG - 16531 - 2-phosphinomethylmalic acid synthase - http://www.bacillondex.org/evidenceType/IMPD - PMS - - - peptide synthetase PhsA - http://www.kegg.jp/dbget-bin/www_bget?K12911 - K12911 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16534 - PHSA - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12914 - PHPK - p-methyltransferase - 16537 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12915 - phosphinothricin tripeptide acetyl hydrolase - 16540 - DEA - - - 16543 - http://www.kegg.jp/dbget-bin/www_bget?K12908 - PHPF - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - phosphinothricin biosynthesis protein PhpF - - - 16546 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12907 - aldehyde dehydrogenase - PHPJ - - - http://www.bacillondex.org/evidenceType/IMPD - D-3-phosphoglycerate dehydrogenase - PHPE - http://www.bacillondex.org/cv/KEGG - 16549 - http://www.kegg.jp/dbget-bin/www_bget?K12906 - - - CHPT1 - diacylglycerol cholinephosphotransferase [EC:2.7.8.2] - http://www.bacillondex.org/evidenceType/IMPD - CPT1 - 16552 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00994 - - - FOMC - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16555 - http://www.kegg.jp/dbget-bin/www_bget?K12901 - phosphonoacetaldehyde reductase - - - http://www.kegg.jp/dbget-bin/www_bget?K00968 - E2.7.7.15 - PCYT1 - 16558 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - choline-phosphate cytidylyltransferase [EC:2.7.7.15] - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ethanolaminephosphotransferase [EC:2.7.8.1] - http://www.kegg.jp/dbget-bin/www_bget?K00993 - E2.7.8.1 - 16561 - - - phosphonoacetaldehyde hydrolase [EC:3.11.1.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05306 - 16564 - PHNX - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K06193 - http://www.bacillondex.org/evidenceType/IMPD - PHNA - 16567 - phosphonoacetate hydrolase [EC:3.11.1.2] - - - E4.1.1.82 - http://www.bacillondex.org/cv/KEGG - 16570 - http://www.kegg.jp/dbget-bin/www_bget?K09459 - http://www.bacillondex.org/evidenceType/IMPD - phosphonopyruvate decarboxylase [EC:4.1.1.82] - - - http://www.bacillondex.org/evidenceType/IMPD - 16573 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01841 - E5.4.2.9 - phosphoenolpyruvate phosphomutase [EC:5.4.2.9] - - - PCYT2 - http://www.bacillondex.org/evidenceType/IMPD - 16576 - ethanolamine-phosphate cytidylyltransferase [EC:2.7.7.14] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00967 - E2.7.7.14 - - - FOM3 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12902 - 16579 - http://www.bacillondex.org/evidenceType/IMPD - phosphonoacetaldehyde methylase - - - http://www.kegg.jp/dbget-bin/www_bget?K12903 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - FOM4 - 2-hydroxypropylphosphonate epoxidase - 16582 - - - 16585 - http://www.bacillondex.org/evidenceType/IMPD - phosphinothricin biosynthesis protein PhpD - http://www.kegg.jp/dbget-bin/www_bget?K12905 - PHPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K08247 - E2.1.1.12 - methionine S-methyltransferase [EC:2.1.1.12] - http://www.bacillondex.org/evidenceType/IMPD - 16588 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01008 - http://www.bacillondex.org/cv/KEGG - 16591 - selenide, water dikinase [EC:2.7.9.3] - E2.7.9.3 - SELD - http://www.bacillondex.org/evidenceType/IMPD - - - L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] - http://www.bacillondex.org/cv/KEGG - 16594 - http://www.bacillondex.org/evidenceType/IMPD - SELA - http://www.kegg.jp/dbget-bin/www_bget?K01042 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - SIR - 16597 - sulfite reductase (ferredoxin) [EC:1.8.7.1] - E1.8.7.1 - http://www.kegg.jp/dbget-bin/www_bget?K00392 - - - 16600 - adenylylsulfate reductase, subunit A [EC:1.8.99.2] - http://www.kegg.jp/dbget-bin/www_bget?K00394+K00395 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - APRA - - - adenylylsulfate reductase, subunit B [EC:1.8.99.2] - APRB - http://www.kegg.jp/dbget-bin/www_bget?K00394+K00395 - 16603 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47 4.4.1.9] - 16606 - ATCYSC1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K13034 - - - 16609 - NIT4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K13035 - http://www.bacillondex.org/cv/KEGG - beta-cyano-L-alanine hydratase/nitrilase [EC:3.5.5.1 3.5.5.4] - - - cyanide hydratase [EC:4.2.1.66] - E4.2.1.66 - http://www.kegg.jp/dbget-bin/www_bget?K10675 - 16612 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 16615 - phenylacetaldoxime dehydratase [EC:4.99.1.7] - http://www.kegg.jp/dbget-bin/www_bget?K10566 - OXDB - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E4.2.1.65 - 16618 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K13036 - 3-cyanoalanine hydratase [EC:4.2.1.65] - - - http://www.kegg.jp/dbget-bin/www_bget?K13031 - 16621 - http://www.bacillondex.org/cv/KEGG - amygdalin beta-glucosidase [EC:3.2.1.117] - http://www.bacillondex.org/evidenceType/IMPD - AH - - - PH - prunasin beta-glucosidase [EC:3.2.1.118] - http://www.kegg.jp/dbget-bin/www_bget?K13032 - 16624 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K13028 - OXDA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16627 - aldoxime dehydratase [EC:4.99.1.5] - - - CYP71E1 - 4-hydroxyphenylacetaldehyde oxime monooxygenase [EC:1.14.13.68] - 16630 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K13029 - - - http://www.bacillondex.org/evidenceType/IMPD - glutamin-(asparagin-)ase [EC:3.5.1.38] - 16633 - E3.5.1.38 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05597 - - - 16636 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11207 - TDPX - glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-] - http://www.bacillondex.org/evidenceType/IMPD - - - trypanothione synthetase/amidase [EC:6.3.1.9 3.5.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K01833 - http://www.bacillondex.org/cv/KEGG - TRYS - 16639 - http://www.bacillondex.org/evidenceType/IMPD - - - GSHB - E6.3.2.3 - glutathione synthase [EC:6.3.2.3] - http://www.kegg.jp/dbget-bin/www_bget?K01920 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16642 - - - http://www.bacillondex.org/evidenceType/IMPD - glutamate--cysteine ligase [EC:6.3.2.2] - GSHA - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205 - 16645 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - glutamate--cysteine ligase catalytic subunit [EC:6.3.2.2] - 16648 - GCLC - http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205 - - - http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16651 - GCLM - glutamate--cysteine ligase regulatory subunit - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E3.5.2.9 - 16654 - 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] - http://www.kegg.jp/dbget-bin/www_bget?K01469 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00682 - 16657 - GGCT - http://www.bacillondex.org/cv/KEGG - gamma-glutamylcyclotransferase [EC:2.3.2.4] - - - http://www.kegg.jp/dbget-bin/www_bget?K00799+K04097 - E2.5.1.18 - 16660 - glutathione S-transferase [EC:2.5.1.18] - GST - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 16663 - GST - glutathione S-transferase [EC:2.5.1.18] - http://www.kegg.jp/dbget-bin/www_bget?K00799+K04097 - http://www.bacillondex.org/evidenceType/IMPD - - - pyrimidodiazepine synthase [EC:1.5.4.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00310 - 16666 - E1.5.4.1 - - - GOR - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00383 - GSR - 16669 - glutathione reductase (NADPH) [EC:1.8.1.7] - E1.8.1.7 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05361 - phospholipid-hydroperoxide glutathione peroxidase [EC:1.11.1.12] - 16672 - E1.11.1.12 - - - phosphogluconate 2-dehydrogenase [EC:1.1.1.43] - 16675 - E1.1.1.43 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00032 - - - 16678 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - TRYP - http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186 - cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15] - - - http://www.bacillondex.org/evidenceType/IMPD - mitochondrial tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15] - 16681 - http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186 - http://www.bacillondex.org/cv/KEGG - MTRYP - - - http://www.kegg.jp/dbget-bin/www_bget?K04283 - http://www.bacillondex.org/evidenceType/IMPD - TRYR - 16684 - http://www.bacillondex.org/cv/KEGG - trypanothione-disulfide reductase [EC:1.8.1.12] - - - http://www.kegg.jp/dbget-bin/www_bget?K10807+K10808 - http://www.bacillondex.org/cv/KEGG - ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] - http://www.bacillondex.org/evidenceType/IMPD - 16687 - RRM1 - - - http://www.bacillondex.org/evidenceType/IMPD - ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] - http://www.bacillondex.org/cv/KEGG - RRM2 - http://www.kegg.jp/dbget-bin/www_bget?K10807+K10808 - 16690 - - - E5.1.3.6 - UDP-glucuronate 4-epimerase [EC:5.1.3.6] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K08679 - 16693 - - - PGM2L1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11809 - glucose-1,6-bisphosphate synthase [EC:2.7.1.106] - 16696 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - GYS - glycogen(starch) synthase [EC:2.4.1.11] - 16699 - http://www.kegg.jp/dbget-bin/www_bget?K00693 - - - http://www.bacillondex.org/evidenceType/IMPD - OTSA - E2.4.1.15 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00697 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15] - 16702 - - - 16705 - http://www.bacillondex.org/evidenceType/IMPD - sucrose synthase [EC:2.4.1.13] - http://www.kegg.jp/dbget-bin/www_bget?K00695 - E2.4.1.13 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K00706 - 1,3-beta-glucan synthase [EC:2.4.1.34] - E2.4.1.34 - http://www.bacillondex.org/evidenceType/IMPD - 16708 - http://www.bacillondex.org/cv/KEGG - - - 16711 - http://www.kegg.jp/dbget-bin/www_bget?K00694 - BCSA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - cellulose synthase (UDP-forming) [EC:2.4.1.12] - - - http://www.bacillondex.org/evidenceType/IMPD - 16714 - sucrose-phosphate synthase [EC:2.4.1.14] - http://www.bacillondex.org/cv/KEGG - E2.4.1.14 - http://www.kegg.jp/dbget-bin/www_bget?K00696 - - - RFBF - http://www.kegg.jp/dbget-bin/www_bget?K00978 - 16717 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] - - - http://www.kegg.jp/dbget-bin/www_bget?K00770 - E2.4.2.24 - 1,4-beta-D-xylan synthase [EC:2.4.2.24] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16720 - - - http://www.bacillondex.org/cv/KEGG - E3.2.1.39 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01199 - glucan endo-1,3-beta-D-glucosidase [EC:3.2.1.39] - 16723 - - - 16726 - UXS1 - http://www.bacillondex.org/evidenceType/IMPD - UDP-glucuronate decarboxylase [EC:4.1.1.35] - http://www.kegg.jp/dbget-bin/www_bget?K08678 - http://www.bacillondex.org/cv/KEGG - - - E5.4.99.16 - http://www.kegg.jp/dbget-bin/www_bget?K05343 - maltose alpha-D-glucosyltransferase [EC:5.4.99.16] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16729 - - - 16732 - glucoamylase [EC:3.2.1.3] - http://www.kegg.jp/dbget-bin/www_bget?K01178+K12047 - E3.2.1.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - MGAM - maltase-glucoamylase [EC:3.2.1.20 3.2.1.3] - http://www.kegg.jp/dbget-bin/www_bget?K01178+K12047 - 16735 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 16738 - E3.2.1.58 - http://www.kegg.jp/dbget-bin/www_bget?K01210 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - glucan 1,3-beta-glucosidase [EC:3.2.1.58] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E2.4.1.7 - 16741 - http://www.kegg.jp/dbget-bin/www_bget?K00690 - sucrose phosphorylase [EC:2.4.1.7] - - - E2.4.1.25 - 4-alpha-glucanotransferase [EC:2.4.1.25] - MALQ - 16744 - http://www.kegg.jp/dbget-bin/www_bget?K00705 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - E2.4.1.4 - 16747 - amylosucrase [EC:2.4.1.4] - http://www.kegg.jp/dbget-bin/www_bget?K05341 - http://www.bacillondex.org/evidenceType/IMPD - - - E2.4.1.5 - dextransucrase [EC:2.4.1.5] - http://www.kegg.jp/dbget-bin/www_bget?K00689 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16750 - - - 16753 - http://www.kegg.jp/dbget-bin/www_bget?K00702 - http://www.bacillondex.org/cv/KEGG - E2.4.1.20 - cellobiose phosphorylase [EC:2.4.1.20] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K01225 - 16756 - http://www.bacillondex.org/cv/KEGG - E3.2.1.91 - http://www.bacillondex.org/evidenceType/IMPD - cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] - - - E2.4.1.64 - http://www.bacillondex.org/cv/KEGG - alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] - http://www.kegg.jp/dbget-bin/www_bget?K05342 - http://www.bacillondex.org/evidenceType/IMPD - 16759 - - - beta-amylase [EC:3.2.1.2] - E3.2.1.2 - 16762 - http://www.kegg.jp/dbget-bin/www_bget?K01177 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - OTSB - http://www.bacillondex.org/evidenceType/IMPD - 16765 - trehalose-phosphatase [EC:3.1.3.12] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01087 - E3.1.3.12 - - - 16768 - http://www.bacillondex.org/cv/KEGG - cyclomaltodextrinase [EC:3.2.1.54] - http://www.kegg.jp/dbget-bin/www_bget?K01208 - E3.2.1.54 - http://www.bacillondex.org/evidenceType/IMPD - - - E3.2.1.28 - http://www.bacillondex.org/cv/KEGG - alpha,alpha-trehalase [EC:3.2.1.28] - http://www.bacillondex.org/evidenceType/IMPD - 16771 - http://www.kegg.jp/dbget-bin/www_bget?K01194 - TREA - - - E3.2.1.33 - http://www.kegg.jp/dbget-bin/www_bget?K01196 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - amylo-1,6-glucosidase [EC:3.2.1.33] - 16774 - - - UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - http://www.bacillondex.org/evidenceType/IMPD - RHM - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12450 - 16777 - - - 16780 - E2.7.7.43 - N-acylneuraminate cytidylyltransferase [EC:2.7.7.43] - CMAS - NEUA - http://www.kegg.jp/dbget-bin/www_bget?K00983 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12448 - UXE - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16783 - UDP-arabinose 4-epimerase [EC:5.1.3.5] - - - http://www.kegg.jp/dbget-bin/www_bget?K01639 - NPL - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16786 - N-acetylneuraminate lyase [EC:4.1.3.3] - E4.1.3.3 - NANA - - - N-acylmannosamine kinase [EC:2.7.1.60] - http://www.bacillondex.org/evidenceType/IMPD - 16789 - http://www.bacillondex.org/cv/KEGG - E2.7.1.60 - http://www.kegg.jp/dbget-bin/www_bget?K00885+K12409 - NANK - - - GNE - 16792 - http://www.kegg.jp/dbget-bin/www_bget?K00885+K12409 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosaminekinase [EC:5.1.3.14 2.7.1.60] - - - http://www.bacillondex.org/cv/KEGG - 16795 - http://www.kegg.jp/dbget-bin/www_bget?K01452 - CDA1 - http://www.bacillondex.org/evidenceType/IMPD - chitin deacetylase [EC:3.5.1.41] - E3.5.1.41 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05304 - sialic acid synthase [EC:2.5.1.56 2.5.1.57] - 16798 - NANS - SAS - - - 16801 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12451 - http://www.bacillondex.org/evidenceType/IMPD - UER1 - 3,5-epimerase/4-reductase [EC:5.1.3.- 1.1.1.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K01097 - NANP - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16804 - N-acylneuraminate-9-phosphatase [EC:3.1.3.29] - - - http://www.bacillondex.org/cv/KEGG - RFBG - http://www.kegg.jp/dbget-bin/www_bget?K01709 - http://www.bacillondex.org/evidenceType/IMPD - 16807 - CDP-glucose 4,6-dehydratase [EC:4.2.1.45] - - - http://www.bacillondex.org/evidenceType/IMPD - NAGK - http://www.bacillondex.org/cv/KEGG - N-acetylglucosamine kinase [EC:2.7.1.59] - 16810 - http://www.kegg.jp/dbget-bin/www_bget?K00884 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - phosphoacetylglucosamine mutase [EC:5.4.2.3] - 16813 - http://www.kegg.jp/dbget-bin/www_bget?K01836 - E5.4.2.3 - - - AXS - http://www.bacillondex.org/cv/KEGG - UDP-apiose/xylose synthase - 16816 - http://www.kegg.jp/dbget-bin/www_bget?K12449 - http://www.bacillondex.org/evidenceType/IMPD - - - RFBJ - http://www.bacillondex.org/cv/KEGG - 16819 - CDP-abequose synthase [EC:4.2.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12455 - - - CDP-paratose synthetase [EC:1.-.-.-] - 16822 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - RFBS - http://www.kegg.jp/dbget-bin/www_bget?K12453 - - - SQD1 - http://www.bacillondex.org/evidenceType/IMPD - 16825 - http://www.kegg.jp/dbget-bin/www_bget?K06118 - SQDB - http://www.bacillondex.org/cv/KEGG - UDP-sulfoquinovose synthase [EC:3.13.1.1] - E3.13.1.1 - - - http://www.bacillondex.org/cv/KEGG - RENBP - http://www.kegg.jp/dbget-bin/www_bget?K01787 - 16828 - http://www.bacillondex.org/evidenceType/IMPD - N-acylglucosamine 2-epimerase [EC:5.1.3.8] - - - http://www.bacillondex.org/cv/KEGG - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.-] - http://www.bacillondex.org/evidenceType/IMPD - WECC - 16831 - http://www.kegg.jp/dbget-bin/www_bget?K02472 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02473 - http://www.bacillondex.org/cv/KEGG - E5.1.3.7 - 16834 - WBPP - UDP-N-acetylglucosamine 4-epimerase [EC:5.1.3.7] - - - 16837 - http://www.bacillondex.org/evidenceType/IMPD - PMRH - http://www.kegg.jp/dbget-bin/www_bget?K07806 - http://www.bacillondex.org/cv/KEGG - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase[EC:2.6.1.-] - ARNB - - - UDP-GlcUA decarboxylase/UDP-L-Ara4N formyltransferase[EC:1.1.1.- 2.1.2.-] - http://www.bacillondex.org/cv/KEGG - ARNA - PMRI - http://www.bacillondex.org/evidenceType/IMPD - 16840 - http://www.kegg.jp/dbget-bin/www_bget?K10011 - - - 16843 - ARNC - http://www.bacillondex.org/cv/KEGG - PMRF - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10012 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase[EC:2.7.8.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K12446 - http://www.bacillondex.org/evidenceType/IMPD - L-arabinokinase [EC:2.7.1.46] - 16846 - ARA1 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12447 - UDP-sugar pyrophosphorylase [EC:2.7.7.64] - USP - 16849 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K12454 - RFBE - http://www.bacillondex.org/evidenceType/IMPD - CDP-paratose 2-epimerase [EC:5.1.3.10] - http://www.bacillondex.org/cv/KEGG - 16852 - - - http://www.bacillondex.org/cv/KEGG - E3.2.1.14 - chitinase [EC:3.2.1.14] - http://www.kegg.jp/dbget-bin/www_bget?K01183 - http://www.bacillondex.org/evidenceType/IMPD - 16855 - - - 16858 - http://www.kegg.jp/dbget-bin/www_bget?K00621 - glucosamine-phosphate N-acetyltransferase [EC:2.3.1.4] - E2.3.1.4 - http://www.bacillondex.org/evidenceType/IMPD - GNA1 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - cytochrome-b5 reductase [EC:1.6.2.2] - E1.6.2.2 - http://www.bacillondex.org/cv/KEGG - 16861 - http://www.kegg.jp/dbget-bin/www_bget?K00326 - - - http://www.kegg.jp/dbget-bin/www_bget?K08080 - 16864 - CMP-N-acetylneuraminate monooxygenase [EC:1.14.18.2] - CMAH - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K01788 - 16867 - N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] - NANE - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 16870 - N-acetylneuraminate synthase [EC:2.5.1.56] - http://www.kegg.jp/dbget-bin/www_bget?K01654+K05304 - E2.5.1.56 - http://www.bacillondex.org/evidenceType/IMPD - NEUB - http://www.bacillondex.org/cv/KEGG - - - UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02474 - WBPO - http://www.bacillondex.org/cv/KEGG - 16873 - - - http://www.kegg.jp/dbget-bin/www_bget?K01789 - LPSL - UDP-glucuronate 5'-epimerase [EC:5.1.3.12] - 16876 - http://www.bacillondex.org/cv/KEGG - E5.1.3.12 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - CHS1 - 16879 - chitin synthase [EC:2.4.1.16] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00698 - - - http://www.kegg.jp/dbget-bin/www_bget?K04340 - STRB1 - scyllo-inosamine-4-phosphate amidinotransferase 1 [EC:2.1.4.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16882 - - - 16885 - STSC - http://www.kegg.jp/dbget-bin/www_bget?K05957 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - L-glutamine:scyllo-inosose aminotransferase [EC:2.6.1.50] - - - http://www.kegg.jp/dbget-bin/www_bget?K12570 - streptomycin 6-kinase [EC:2.7.1.72] - STRA - 16888 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K04342 - 16891 - streptomycin-6-phosphatase [EC:3.1.3.39] - http://www.bacillondex.org/evidenceType/IMPD - STRK - http://www.bacillondex.org/cv/KEGG - - - E5.5.1.4 - myo-inositol-1-phosphate synthase [EC:5.5.1.4] - http://www.kegg.jp/dbget-bin/www_bget?K01858 - 16894 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - INO1 - - - http://www.kegg.jp/dbget-bin/www_bget?K04341 - http://www.bacillondex.org/evidenceType/IMPD - 16897 - dTDP-dihydrostreptose-streptidine-6-phosphatedihydrostreptosyltransferase [EC:2.4.2.27] - E2.4.2.27 - http://www.bacillondex.org/cv/KEGG - - - scyllo-inosamine 4-kinase [EC:2.7.1.65] - http://www.bacillondex.org/cv/KEGG - 16900 - http://www.kegg.jp/dbget-bin/www_bget?K04339 - http://www.bacillondex.org/evidenceType/IMPD - STSE - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K11693 - 16903 - FMHB - http://www.bacillondex.org/evidenceType/IMPD - FEMX - peptidoglycan pentaglycine glycine transferase (the first glycine)[EC:2.3.2.-] - - - peptidoglycan pentaglycine glycine transferase (the fourth and fifthglycine) [EC:2.3.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K11695 - FEMB - http://www.bacillondex.org/evidenceType/IMPD - 16906 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 16909 - http://www.bacillondex.org/cv/KEGG - FEMA - peptidoglycan pentaglycine glycine transferase (the second and thirdglycine) [EC:2.3.2.-] - http://www.kegg.jp/dbget-bin/www_bget?K11694 - - - http://www.bacillondex.org/cv/KEGG - serine/alanine adding enzyme [EC:2.3.2.10] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05363 - 16912 - MURM - - - undecaprenol kinase [EC:2.7.1.66] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E2.7.1.66 - http://www.kegg.jp/dbget-bin/www_bget?K00887 - 16915 - - - MURE - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase[EC:6.3.2.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05362 - E6.3.2.7 - 16918 - - - http://www.kegg.jp/dbget-bin/www_bget?K05364 - http://www.bacillondex.org/evidenceType/IMPD - 16921 - http://www.bacillondex.org/cv/KEGG - peptidoglycan glycosyltransferase [EC:2.4.1.129] - E2.4.1.129 - - - http://www.kegg.jp/dbget-bin/www_bget?K12554 - http://www.bacillondex.org/cv/KEGG - MURN - 16924 - http://www.bacillondex.org/evidenceType/IMPD - alanine adding enzyme [EC:2.3.2.-] - - - 16927 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.2.1.30L - glycerol dehydratase large subunit [EC:4.2.1.30] - http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122 - PDUC - - - http://www.bacillondex.org/evidenceType/IMPD - glycerol dehydratase medium subunit [EC:4.2.1.30] - http://www.bacillondex.org/cv/KEGG - E4.2.1.30M - http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122 - 16930 - PDUD - - - E4.2.1.30S - 16933 - PDUE - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122 - glycerol dehydratase small subunit [EC:4.2.1.30] - - - http://www.kegg.jp/dbget-bin/www_bget?K01059 - LPL - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 16936 - lipoprotein lipase [EC:3.1.1.34] - - - E2.7.8.20 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01002 - MDOB - http://www.bacillondex.org/evidenceType/IMPD - phosphoglycerol transferase [EC:2.7.8.20] - 16939 - - - http://www.kegg.jp/dbget-bin/www_bget?K00005 - E1.1.1.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - GLDA - glycerol dehydrogenase [EC:1.1.1.6] - 16942 - - - 1,3-propanediol dehydrogenase [EC:1.1.1.202] - E1.1.1.202 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - DHAT - 16945 - http://www.kegg.jp/dbget-bin/www_bget?K00086 - - - http://www.bacillondex.org/cv/KEGG - diol dehydratase [EC:4.2.1.28] - 16948 - http://www.kegg.jp/dbget-bin/www_bget?K01699 - http://www.bacillondex.org/evidenceType/IMPD - E4.2.1.28 - - - http://www.bacillondex.org/evidenceType/IMPD - 16951 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K06119 - sulfoquinovosyltransferase [EC:2.4.1.-] - SQD2 - - - http://www.kegg.jp/dbget-bin/www_bget?K00679 - 16954 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - phospholipid:diacylglycerol acyltransferase [EC:2.3.1.158] - E2.3.1.158 - - - digalactosyldiacylglycerol synthase [EC:2.4.1.241] - http://www.bacillondex.org/evidenceType/IMPD - E2.4.1.241 - 16957 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09480 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03715 - E2.4.1.46 - 1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46] - 16960 - - - diacylglycerol O-acyltransferase [EC:2.3.1.20] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00635+K11155+K11156+K11160 - E2.3.1.20 - http://www.bacillondex.org/evidenceType/IMPD - 16963 - - - http://www.bacillondex.org/evidenceType/IMPD - diacylglycerol O-acyltransferase 1 [EC:2.3.1.20 2.3.1.76] - http://www.kegg.jp/dbget-bin/www_bget?K00635+K11155+K11156+K11160 - http://www.bacillondex.org/cv/KEGG - DGAT1 - 16966 - - - 16969 - http://www.bacillondex.org/evidenceType/IMPD - DGAT2L4 - http://www.kegg.jp/dbget-bin/www_bget?K00635+K11155+K11156+K11160 - diacylglycerol O-acyltransferase 2-like protein 4 [EC:2.3.1.76] - MFAT - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 16972 - http://www.kegg.jp/dbget-bin/www_bget?K00635+K11155+K11156+K11160 - diacylglycerol O-acyltransferase 2 [EC:2.3.1.20 2.3.1.76] - DGAT2 - - - 16975 - http://www.bacillondex.org/cv/KEGG - E2.7.1.29 - DAK1 - http://www.bacillondex.org/evidenceType/IMPD - DAK2 - http://www.kegg.jp/dbget-bin/www_bget?K00863+K05878+K05879 - dihydroxyacetone kinase [EC:2.7.1.29] - - - http://www.bacillondex.org/evidenceType/IMPD - dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-] - 16978 - http://www.bacillondex.org/cv/KEGG - DHAK - http://www.kegg.jp/dbget-bin/www_bget?K00863+K05878+K05879 - - - 16981 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00863+K05878+K05879 - dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-] - http://www.bacillondex.org/cv/KEGG - DHAL - - - acylglycerol lipase [EC:3.1.1.23] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01054 - http://www.bacillondex.org/evidenceType/IMPD - 16984 - E3.1.1.23 - - - http://www.bacillondex.org/cv/KEGG - glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] - E2.3.1.15 - http://www.kegg.jp/dbget-bin/www_bget?K00629+K00630+K00631 - http://www.bacillondex.org/evidenceType/IMPD - 16987 - - - glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] - http://www.kegg.jp/dbget-bin/www_bget?K00629+K00630+K00631 - http://www.bacillondex.org/cv/KEGG - E2.3.1.15A - http://www.bacillondex.org/evidenceType/IMPD - 16990 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00629+K00630+K00631 - http://www.bacillondex.org/cv/KEGG - 16993 - glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] - E2.3.1.15B - PLSB - - - 16996 - AGK - http://www.kegg.jp/dbget-bin/www_bget?K09881 - acylglycerol kinase [EC:2.7.1.94] - E2.7.1.94 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] - E2.3.1.51 - PLSC - http://www.kegg.jp/dbget-bin/www_bget?K00655 - 16999 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - PPAP2 - 17002 - E3.1.3.4 - http://www.kegg.jp/dbget-bin/www_bget?K01080 - phosphatidate phosphatase [EC:3.1.3.4] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - GPP1 - http://www.kegg.jp/dbget-bin/www_bget?K06116+K06117 - glycerol 3-phosphatase 1 [EC:3.1.3.21] - 17005 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - glycerol 3-phosphatase 2 [EC:3.1.3.21] - GPP2 - http://www.kegg.jp/dbget-bin/www_bget?K06116+K06117 - 17008 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase[EC:3.1.4.11] - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - 17011 - http://www.bacillondex.org/evidenceType/IMPD - E3.1.4.11 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - phospholipase C, delta [EC:3.1.4.11] - 17014 - PLCD - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 17017 - PLCB - phospholipase C, beta [EC:3.1.4.11] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - - - 17020 - phospholipase C, gamma [EC:3.1.4.11] - PLCG - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17023 - phospholipase C, epsilon - PLCE - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - PLCZ - http://www.bacillondex.org/cv/KEGG - 17026 - phospholipase C, zeta - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01116+K05857+K05858+K05859+K05860+K05861 - - - E2.7.1.153 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00922 - phosphatidylinositol-4,5-bisphosphate 3-kinase [EC:2.7.1.153] - PIK3C - 17029 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - IPPK - inositol-pentakisphosphate 2-kinase [EC:2.7.1.158] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10572 - 17032 - - - E1.2.1.18 - http://www.kegg.jp/dbget-bin/www_bget?K00136 - http://www.bacillondex.org/cv/KEGG - malonate-semialdehyde dehydrogenase (acetylating) [EC:1.2.1.18] - http://www.bacillondex.org/evidenceType/IMPD - 17035 - - - E2.7.1.67 - http://www.bacillondex.org/cv/KEGG - 17038 - phosphatidylinositol 4-kinase [EC:2.7.1.67] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00888 - - - PLCC - phospholipase C [EC:3.1.4.3] - 17041 - http://www.kegg.jp/dbget-bin/www_bget?K01114 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E2.7.1.149 - 17044 - PIP4K - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00920 - 1-phosphatidylinositol-5-phosphate 4-kinase [EC:2.7.1.149] - - - http://www.bacillondex.org/cv/KEGG - 17047 - PTEN - http://www.kegg.jp/dbget-bin/www_bget?K01110 - http://www.bacillondex.org/evidenceType/IMPD - E3.1.3.67 - phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [EC:3.1.3.67] - - - 17050 - http://www.bacillondex.org/cv/KEGG - 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68] - E2.7.1.68 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00889 - PIP5K - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00328 - inositol-polyphosphate multikinase [EC:2.7.1.151] - E2.7.1.151 - IPMK - 17053 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - phosphatidylinositol-3-phosphatase [EC:3.1.3.64] - http://www.kegg.jp/dbget-bin/www_bget?K01108 - 17056 - E3.1.3.64 - - - 17059 - E3.1.3.36 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01099 - http://www.bacillondex.org/cv/KEGG - phosphatidylinositol-bisphosphatase [EC:3.1.3.36] - - - http://www.bacillondex.org/cv/KEGG - phosphatidylinositol 3-kinase [EC:2.7.1.137] - http://www.kegg.jp/dbget-bin/www_bget?K00914 - PIK3C3 - VPS34 - 17062 - http://www.bacillondex.org/evidenceType/IMPD - E2.7.1.137 - - - 17065 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01106 - inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56] - E3.1.3.56 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03103 - 17068 - multiple inositol-polyphosphate phosphatase [EC:3.1.3.62] - MINPP1 - - - 17071 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01107 - INPP1 - inositol polyphosphate 1-phosphatase [EC:3.1.3.57] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00915 - E2.7.1.140 - http://www.bacillondex.org/evidenceType/IMPD - 17074 - 1D-myo-Inositol-tetrakisphosphate 5-kinase [EC:2.7.1.140] - - - http://www.kegg.jp/dbget-bin/www_bget?K00913 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ITPK1 - 17077 - 1D-myo-Inositol-trisphosphate 6-kinase [EC:2.7.1.134] - - - http://www.bacillondex.org/evidenceType/IMPD - 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] - http://www.kegg.jp/dbget-bin/www_bget?K01093 - http://www.bacillondex.org/cv/KEGG - APPA - 17080 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - inositol polyphosphate-4-phosphatase [EC:3.1.3.66] - http://www.kegg.jp/dbget-bin/www_bget?K01109 - 17083 - INPP4 - - - http://www.bacillondex.org/cv/KEGG - 17086 - phosphatidylinositol-4-phosphate 3-kinase [EC:2.7.1.154] - PIK3C2 - http://www.bacillondex.org/evidenceType/IMPD - E2.7.1.154 - http://www.kegg.jp/dbget-bin/www_bget?K00923 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CDP-diacylglycerol--inositol 3-phosphatidyltransferase [EC:2.7.8.11] - 17089 - E2.7.8.11 - http://www.kegg.jp/dbget-bin/www_bget?K00999 - - - http://www.bacillondex.org/evidenceType/IMPD - E2.7.1.127 - http://www.kegg.jp/dbget-bin/www_bget?K00911 - 17092 - http://www.bacillondex.org/cv/KEGG - 1D-myo-inositol-triphosphate 3-kinase [EC:2.7.1.127] - ITPK - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - FAB1 - 17095 - E2.7.1.150 - http://www.kegg.jp/dbget-bin/www_bget?K00921 - 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - - - http://www.bacillondex.org/cv/KEGG - 17098 - http://www.kegg.jp/dbget-bin/www_bget?K01047 - PLA2G - http://www.bacillondex.org/evidenceType/IMPD - phospholipase A2 [EC:3.1.1.4] - - - http://www.bacillondex.org/evidenceType/IMPD - phospholipase D [EC:3.1.4.4] - E3.1.4.4 - 17101 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01115 - PLD - - - http://www.bacillondex.org/evidenceType/IMPD - phosphoethanolamine/phosphocholine phosphatase [EC:3.1.3.75] - PHOSPHO1 - E3.1.3.75 - 17104 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K06124 - - - http://www.bacillondex.org/cv/KEGG - 17107 - PLDA - phospholipase A1 [EC:3.1.1.32] - http://www.kegg.jp/dbget-bin/www_bget?K01058 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00623 - http://www.bacillondex.org/cv/KEGG - choline O-acetyltransferase [EC:2.3.1.6] - E2.3.1.6 - 17110 - http://www.bacillondex.org/evidenceType/IMPD - CHAT - - - http://www.bacillondex.org/evidenceType/IMPD - ethanolamine kinase [EC:2.7.1.82] - http://www.bacillondex.org/cv/KEGG - E2.7.1.82 - EKI1 - 17113 - http://www.kegg.jp/dbget-bin/www_bget?K00894 - - - http://www.kegg.jp/dbget-bin/www_bget?K08729 - phosphatidylserine synthase 1 [EC:2.7.8.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - PTDSS1 - 17116 - - - PTDSS2 - phosphatidylserine synthase 2 [EC:2.7.8.-] - http://www.kegg.jp/dbget-bin/www_bget?K08730 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17119 - - - E1.1.3.21 - http://www.bacillondex.org/cv/KEGG - 17122 - alpha-glycerophosphate oxidase [EC:1.1.3.21] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00105 - - - glyceronephosphate O-acyltransferase [EC:2.3.1.42] - E2.3.1.42 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00649 - GNPAT - 17125 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01004 - 17128 - PCS - E2.7.8.24 - phosphatidylcholine synthase [EC:2.7.8.24] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - ACHE - acetylcholinesterase [EC:3.1.1.7] - http://www.kegg.jp/dbget-bin/www_bget?K01049 - E3.1.1.7 - http://www.bacillondex.org/evidenceType/IMPD - 17131 - http://www.bacillondex.org/cv/KEGG - - - CHK - choline kinase [EC:2.7.1.32] - 17134 - http://www.kegg.jp/dbget-bin/www_bget?K00866 - E2.7.1.32 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] - E3.6.1.26 - http://www.kegg.jp/dbget-bin/www_bget?K01521 - 17137 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CDH - - - 17140 - http://www.bacillondex.org/evidenceType/IMPD - E3.6.1.16 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01517 - CDPglycerol pyrophosphatase [EC:3.6.1.16] - - - E2.1.1.71 - http://www.kegg.jp/dbget-bin/www_bget?K00570 - phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.71] - 17143 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - AAS - E2.3.1.40 - http://www.kegg.jp/dbget-bin/www_bget?K05939 - 17146 - acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase[EC:2.3.1.40] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - lysophospholipase I [EC:3.1.1.5] - http://www.bacillondex.org/evidenceType/IMPD - 17149 - http://www.kegg.jp/dbget-bin/www_bget?K06128+K06129 - http://www.bacillondex.org/cv/KEGG - LYPLA1 - - - LYPLA3 - 17152 - lysophospholipase III [EC:3.1.1.5] - http://www.kegg.jp/dbget-bin/www_bget?K06128+K06129 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 17155 - http://www.kegg.jp/dbget-bin/www_bget?K00551 - PEMT - phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17] - E2.1.1.17 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 17158 - http://www.bacillondex.org/evidenceType/IMPD - lysophospholipase II [EC:3.1.1.5] - LYPLA2 - http://www.kegg.jp/dbget-bin/www_bget?K06130 - - - http://www.kegg.jp/dbget-bin/www_bget?K05929 - E2.1.1.103 - phosphoethanolamine N-methyltransferase [EC:2.1.1.103] - NMT - http://www.bacillondex.org/cv/KEGG - 17161 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K06123 - http://www.bacillondex.org/cv/KEGG - E1.1.1.101 - 1-acylglycerone phosphate reductase [EC:1.1.1.101] - http://www.bacillondex.org/evidenceType/IMPD - AYR1 - 17164 - - - lecithin-cholesterol acyltransferase [EC:2.3.1.43] - http://www.bacillondex.org/cv/KEGG - E2.3.1.43 - LCAT - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00650 - 17167 - - - http://www.bacillondex.org/cv/KEGG - E3.1.4.13 - serine-ethanolaminephosphate phosphodiesterase [EC:3.1.4.13] - 17170 - http://www.kegg.jp/dbget-bin/www_bget?K05980 - http://www.bacillondex.org/evidenceType/IMPD - - - GPD1 - E1.1.1.8 - 17173 - http://www.kegg.jp/dbget-bin/www_bget?K00006 - glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17176 - http://www.bacillondex.org/evidenceType/IMPD - phosphatidylglycerophosphatase A [EC:3.1.3.27] - PGPA - http://www.kegg.jp/dbget-bin/www_bget?K01095+K01096 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01095+K01096 - http://www.bacillondex.org/cv/KEGG - 17179 - http://www.bacillondex.org/evidenceType/IMPD - PGPB - phosphatidylglycerophosphatase B [EC:3.1.3.27] - - - E4.3.1.7L - http://www.bacillondex.org/cv/KEGG - 17182 - ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] - http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019 - http://www.bacillondex.org/evidenceType/IMPD - EUTB - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] - http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019 - EUTC - 17185 - E4.3.1.7S - - - ethanolamine utilization protein EutA - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019 - http://www.bacillondex.org/cv/KEGG - EUTA - 17188 - - - http://www.kegg.jp/dbget-bin/www_bget?K08726 - soluble epoxide hydrolase [EC:3.3.2.10] - 17191 - E3.3.2.10 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - EPHX2 - - - http://www.bacillondex.org/cv/KEGG - carbonyl reductase (NADPH) [EC:1.1.1.184] - E1.1.1.184 - http://www.kegg.jp/dbget-bin/www_bget?K00079 - http://www.bacillondex.org/evidenceType/IMPD - 17194 - CBR - - - 17197 - E5.3.99.2 - prostaglandin-H2 D-isomerase [EC:5.3.99.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - PTGDS - http://www.kegg.jp/dbget-bin/www_bget?K01830 - - - E1.1.1.188 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04119 - 17200 - prostaglandin-F synthase [EC:1.1.1.188] - - - TBXAS1 - 17203 - http://www.kegg.jp/dbget-bin/www_bget?K01832 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 5, subfamily A (thromboxane-A synthase)[EC:5.3.99.5] - CYP5A - - - 17206 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - prostaglandin-E synthase [EC:5.3.99.3] - PTGES - E5.3.99.3 - http://www.kegg.jp/dbget-bin/www_bget?K05309 - - - http://www.bacillondex.org/evidenceType/IMPD - CYP8A - http://www.kegg.jp/dbget-bin/www_bget?K01831 - PTGIS - cytochrome P450, family 8, subfamily A (Prostacyclin synthase)[EC:5.3.99.4] - 17209 - http://www.bacillondex.org/cv/KEGG - - - PTGS1 - 17212 - http://www.kegg.jp/dbget-bin/www_bget?K00509+K11987 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - COX1 - prostaglandin-endoperoxide synthase 1 [EC:1.14.99.1] - - - http://www.bacillondex.org/cv/KEGG - prostaglandin-endoperoxide synthase 2 [EC:1.14.99.1] - COX2 - 17215 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00509+K11987 - PTGS2 - - - http://www.bacillondex.org/cv/KEGG - 17218 - http://www.kegg.jp/dbget-bin/www_bget?K00458 - http://www.bacillondex.org/evidenceType/IMPD - arachidonate 12-lipoxygenase [EC:1.13.11.31] - E1.13.11.31 - ALOX12 - - - ALOX5 - http://www.kegg.jp/dbget-bin/www_bget?K00461 - arachidonate 5-lipoxygenase [EC:1.13.11.34] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17221 - E1.13.11.34 - - - E1.13.11.33 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17224 - http://www.kegg.jp/dbget-bin/www_bget?K00460+K08022 - ALOX15 - arachidonate 15-lipoxygenase [EC:1.13.11.33] - - - http://www.bacillondex.org/cv/KEGG - arachidonate 15-lipoxygenase (second type) / 8-lipoxygenase (S-type)[EC:1.13.11.33 1.13.11.-] - ALOX15B - http://www.bacillondex.org/evidenceType/IMPD - 17227 - http://www.kegg.jp/dbget-bin/www_bget?K00460+K08022 - - - http://www.kegg.jp/dbget-bin/www_bget?K00490 - http://www.bacillondex.org/evidenceType/IMPD - 17230 - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 4, subfamily F (leukotriene-B420-monooxygenase) [EC:1.14.13.30] - CYP4F - - - LTC4S - http://www.bacillondex.org/evidenceType/IMPD - E4.4.1.20 - http://www.kegg.jp/dbget-bin/www_bget?K00807 - leukotriene-C4 synthase [EC:4.4.1.20] - 17233 - http://www.bacillondex.org/cv/KEGG - - - leukotriene-A4 hydrolase [EC:3.3.2.6] - http://www.bacillondex.org/evidenceType/IMPD - LTA4H - 17236 - http://www.bacillondex.org/cv/KEGG - E3.3.2.6 - http://www.kegg.jp/dbget-bin/www_bget?K01254 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07422 - cytochrome P450, family 2, subfamily U - 17239 - http://www.bacillondex.org/evidenceType/IMPD - CYP2U - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K08021 - ALOX12B - 17242 - http://www.bacillondex.org/evidenceType/IMPD - arachidonate 12-lipoxygenase (R-type) [EC:1.13.11.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07413 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 2, subfamily C [EC:1.14.14.1] - 17245 - CYP2C - - - cytochrome P450, family 2, subfamily J [EC:1.14.14.1] - CYP2J - http://www.kegg.jp/dbget-bin/www_bget?K07413+K07418 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17248 - - - 17251 - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 2, subfamily B [EC:1.14.14.1] - CYP2B - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07412+K07413+K07418 - - - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 4, subfamily A [EC:1.14.15.3] - 17254 - http://www.bacillondex.org/evidenceType/IMPD - CYP4A - http://www.kegg.jp/dbget-bin/www_bget?K07412+K07413+K07418+K07425 - - - SGMS - http://www.bacillondex.org/evidenceType/IMPD - shingomyelin synthase [EC:2.7.8.27] - 17257 - http://www.kegg.jp/dbget-bin/www_bget?K04714 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - serine palmitoyltransferase [EC:2.3.1.50] - E2.3.1.50 - 17260 - http://www.kegg.jp/dbget-bin/www_bget?K00654 - http://www.bacillondex.org/cv/KEGG - - - 3-dehydrosphinganine reductase [EC:1.1.1.102] - http://www.kegg.jp/dbget-bin/www_bget?K04708 - http://www.bacillondex.org/evidenceType/IMPD - E1.1.1.102 - 17263 - http://www.bacillondex.org/cv/KEGG - - - 17266 - GAL3ST1 - http://www.kegg.jp/dbget-bin/www_bget?K01019 - galactosylceramide sulfotransferase [EC:2.8.2.11] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E3.2.1.45 - glucosylceramidase [EC:3.2.1.45] - SRFJ - GBA - 17269 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01201 - - - 17272 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04628 - CGT - UDP-galactose ceramide galactosyltransferase [EC:2.4.1.47] - UGT8 - http://www.bacillondex.org/cv/KEGG - - - NEU1 - sialidase-1 [EC:3.2.1.18] - 17275 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357 - http://www.bacillondex.org/cv/KEGG - - - sialidase-2/3/4 [EC:3.2.1.18] - http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357 - 17278 - NEU2_3_4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - acid ceramidase [EC:3.5.1.23] - 17281 - http://www.kegg.jp/dbget-bin/www_bget?K12348+K12349 - ASAH1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17284 - http://www.kegg.jp/dbget-bin/www_bget?K12348+K12349 - ASAH2 - neutral ceramidase [EC:3.5.1.23] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 17287 - http://www.kegg.jp/dbget-bin/www_bget?K04716+K04717 - SGPP1 - sphingosine-1-phosphate phosphatase 1 [EC:3.1.3.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04716+K04717 - http://www.bacillondex.org/evidenceType/IMPD - sphingosine-1-phosphate phosphotase 2 [EC:3.1.3.-] - SGPP2 - 17290 - - - LAG1 - Acyl-CoA-dependent ceramide synthase [EC:2.3.1.24] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04709+K04710 - 17293 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K04709+K04710 - http://www.bacillondex.org/cv/KEGG - LAC1 - Acyl-CoA-dependent ceramide synthase [EC:2.3.1.24] - http://www.bacillondex.org/evidenceType/IMPD - 17296 - - - B4GALT6 - beta-1,4-galactosyltransferase 6 [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07553 - 17299 - - - http://www.kegg.jp/dbget-bin/www_bget?K01123 - http://www.bacillondex.org/cv/KEGG - sphingomyelin phosphodiesterase D [EC:3.1.4.41] - E3.1.4.41 - http://www.bacillondex.org/evidenceType/IMPD - 17302 - - - ASLA - http://www.bacillondex.org/evidenceType/IMPD - arylsulfatase [EC:3.1.6.1] - E3.1.6.1 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01130 - 17305 - - - E3.1.4.12 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - sphingomyelin phosphodiesterase [EC:3.1.4.12] - 17308 - - - http://www.bacillondex.org/cv/KEGG - ASM - sphingomyelin phosphodiesterase [EC:3.1.4.12] - 17311 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - SMPD1 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - 17314 - SMPD2 - http://www.bacillondex.org/cv/KEGG - sphingomyelin phosphodiesterase 2 [EC:3.1.4.12] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - http://www.bacillondex.org/cv/KEGG - 17317 - SMPD3 - sphingomyelin phosphodiesterase 3 [EC:3.1.4.12] - - - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - http://www.bacillondex.org/evidenceType/IMPD - SMPD4 - http://www.bacillondex.org/cv/KEGG - 17320 - sphingomyelin phosphodiesterase 4 [EC:3.1.4.12] - - - http://www.bacillondex.org/cv/KEGG - 17323 - ectonucleotide pyrophosphatase/phosphodiesterase family member 7[EC:3.1.4.12] - ENPP7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01117+K12350+K12351+K12352+K12353+K12354 - - - http://www.kegg.jp/dbget-bin/www_bget?K04713 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17326 - C4-hydroxylase [EC:1.14.-.-] - SUR2 - - - http://www.bacillondex.org/evidenceType/IMPD - E2.7.1.138 - http://www.kegg.jp/dbget-bin/www_bget?K04715 - http://www.bacillondex.org/cv/KEGG - 17329 - CERK - ceramide kinase [EC:2.7.1.138] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - sphingosine kinase [EC:2.7.1.91] - 17332 - E2.7.1.91 - http://www.kegg.jp/dbget-bin/www_bget?K04718 - - - ACER - 17335 - alkaline ceramidase [EC:3.5.1.23] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ASAH3 - http://www.kegg.jp/dbget-bin/www_bget?K01441+K12348+K12349 - - - 17338 - UGCG - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00720 - ceramide glucosyltransferase [EC:2.4.1.80] - - - http://www.bacillondex.org/evidenceType/IMPD - DEGS - 17341 - http://www.bacillondex.org/cv/KEGG - sphingolipid delta-4 desaturase [EC:1.14.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K04712 - - - http://www.kegg.jp/dbget-bin/www_bget?K01634 - 17344 - E4.1.2.27 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - sphinganine-1-phosphate aldolase [EC:4.1.2.27] - - - http://www.bacillondex.org/cv/KEGG - 17347 - http://www.bacillondex.org/evidenceType/IMPD - GALC - http://www.kegg.jp/dbget-bin/www_bget?K01202 - galactosylceramidase [EC:3.2.1.46] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - glyoxylate reductase (NADP+) [EC:1.1.1.79] - E1.1.1.79 - http://www.kegg.jp/dbget-bin/www_bget?K00049+K12972 - 17350 - - - GHRA - gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17353 - http://www.kegg.jp/dbget-bin/www_bget?K00049+K12972 - - - http://www.kegg.jp/dbget-bin/www_bget?K00028 - malate dehydrogenase (decarboxylating) [EC:1.1.1.39] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E1.1.1.39 - 17356 - - - OADA - http://www.bacillondex.org/cv/KEGG - E4.1.1.3A - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573 - 17359 - oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3] - - - OADB - http://www.bacillondex.org/evidenceType/IMPD - 17362 - http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573 - http://www.bacillondex.org/cv/KEGG - E4.1.1.3B - oxaloacetate decarboxylase, beta subunit [EC:4.1.1.3] - - - http://www.bacillondex.org/evidenceType/IMPD - oxaloacetate decarboxylase, gamma subunit [EC:4.1.1.3] - http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573 - E4.1.1.3G - 17365 - http://www.bacillondex.org/cv/KEGG - OADG - - - PFLD - formate C-acetyltransferase [EC:2.3.1.54] - http://www.bacillondex.org/evidenceType/IMPD - 17368 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00656 - E2.3.1.54 - - - E1.1.1.40 - MAEB - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)[EC:1.1.1.40] - 17371 - http://www.kegg.jp/dbget-bin/www_bget?K00029 - - - http://www.bacillondex.org/cv/KEGG - malate dehydrogenase (acceptor) [EC:1.1.99.16] - 17374 - http://www.kegg.jp/dbget-bin/www_bget?K00116 - MQO - E1.1.99.16 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E1.1.1.82 - http://www.bacillondex.org/cv/KEGG - malate dehydrogenase (NADP+) [EC:1.1.1.82] - http://www.kegg.jp/dbget-bin/www_bget?K00051 - 17377 - - - http://www.kegg.jp/dbget-bin/www_bget?K01663 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17380 - E4.1.3.- - - - 17383 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00048 - lactaldehyde reductase [EC:1.1.1.77] - http://www.bacillondex.org/evidenceType/IMPD - FUCO - - - DLD - http://www.kegg.jp/dbget-bin/www_bget?K03777+K03778 - http://www.bacillondex.org/cv/KEGG - 17386 - D-lactate dehydrogenase [EC:1.1.1.28] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03777+K03778 - 17389 - D-lactate dehydrogenase [EC:1.1.1.28] - http://www.bacillondex.org/cv/KEGG - LDHA - - - http://www.bacillondex.org/evidenceType/IMPD - 17392 - E1.1.2.4 - http://www.bacillondex.org/cv/KEGG - DLD - http://www.kegg.jp/dbget-bin/www_bget?K00102 - D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] - - - GLOB - hydroxyacylglutathione hydrolase [EC:3.1.2.6] - E3.1.2.6 - http://www.bacillondex.org/evidenceType/IMPD - 17395 - http://www.kegg.jp/dbget-bin/www_bget?K01069 - http://www.bacillondex.org/cv/KEGG - - - lactaldehyde dehydrogenase [EC:1.2.1.22] - 17398 - ALDB - http://www.kegg.jp/dbget-bin/www_bget?K00138 - E1.2.1.22 - ALDA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01905 - 17401 - E6.2.1.13 - acetyl-CoA synthetase (ADP-forming) [EC:6.2.1.13] - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01026 - propionate CoA-transferase [EC:2.8.3.1] - E2.8.3.1 - 17404 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 17407 - PPDK - http://www.bacillondex.org/evidenceType/IMPD - pyruvate,orthophosphate dikinase [EC:2.7.9.1] - http://www.kegg.jp/dbget-bin/www_bget?K01006 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.2.1.10 - 17410 - http://www.kegg.jp/dbget-bin/www_bget?K00132+K04021+K04072+K04073 - acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] - http://www.bacillondex.org/cv/KEGG - - - 17413 - http://www.bacillondex.org/evidenceType/IMPD - EUTE - aldehyde dehydrogenase - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00132+K04021+K04072+K04073 - - - acetaldehyde dehydrogenase [EC:1.2.1.10] - ADHE - 17416 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00132+K04021+K04072+K04073 - http://www.bacillondex.org/evidenceType/IMPD - E1.2.1.10A - - - http://www.bacillondex.org/cv/KEGG - acetaldehyde dehydrogenase [EC:1.2.1.10] - MHPF - http://www.kegg.jp/dbget-bin/www_bget?K00132+K04021+K04072+K04073 - http://www.bacillondex.org/evidenceType/IMPD - 17419 - E1.2.1.10M - - - LLDD - 17422 - E1.1.2.3 - http://www.bacillondex.org/evidenceType/IMPD - L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00101 - - - http://www.bacillondex.org/evidenceType/IMPD - GLCB - malate synthase [EC:2.3.3.9] - 17425 - E2.3.3.9 - ACEB - http://www.kegg.jp/dbget-bin/www_bget?K01638 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01595 - 17428 - http://www.bacillondex.org/cv/KEGG - phosphoenolpyruvate carboxylase [EC:4.1.1.31] - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.31 - PPC - - - http://www.bacillondex.org/cv/KEGG - ACH1 - E3.1.2.1 - http://www.kegg.jp/dbget-bin/www_bget?K01067 - http://www.bacillondex.org/evidenceType/IMPD - 17431 - acetyl-CoA hydrolase [EC:3.1.2.1] - - - http://www.bacillondex.org/cv/KEGG - E1.13.12.4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00467 - lactate 2-monooxygenase [EC:1.13.12.4] - 17434 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00156 - E1.2.2.2 - pyruvate dehydrogenase (cytochrome) [EC:1.2.2.2] - http://www.bacillondex.org/cv/KEGG - POXB - 17437 - - - 17440 - E1.13.-.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05915 - - - http://www.bacillondex.org/cv/KEGG - salicylate hydroxylase [EC:1.14.13.1] - E1.14.13.1 - 17443 - http://www.kegg.jp/dbget-bin/www_bget?K00480 - http://www.bacillondex.org/evidenceType/IMPD - - - 17446 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E4.1.99.- - http://www.kegg.jp/dbget-bin/www_bget?K01670 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.2.1.65 - 17449 - http://www.bacillondex.org/cv/KEGG - salicylaldehyde dehydrogenase [EC:1.2.1.65] - http://www.kegg.jp/dbget-bin/www_bget?K00152 - - - http://www.bacillondex.org/evidenceType/IMPD - benzene 1,2-dioxygenase [EC:1.14.12.3] - http://www.kegg.jp/dbget-bin/www_bget?K03268 - http://www.bacillondex.org/cv/KEGG - E1.14.12.3 - 17452 - - - hydratase-aldolase [EC:4.1.2.-] - http://www.bacillondex.org/cv/KEGG - 17455 - PHDG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11946 - - - PAH dioxygenase large subunit [EC:1.13.11.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17458 - NIDA - http://www.kegg.jp/dbget-bin/www_bget?K11943+K11944 - - - PAH dioxygenase small subunit [EC:1.13.11.-] - 17461 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11943+K11944 - http://www.bacillondex.org/cv/KEGG - NIDB - - - PHDF - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17464 - http://www.kegg.jp/dbget-bin/www_bget?K11945 - extradiol dioxygenase [EC:1.13.11.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K11948 - 17467 - http://www.bacillondex.org/cv/KEGG - 1-hydroxy-2-naphthoate dioxygenase [EC:1.13.11.38] - http://www.bacillondex.org/evidenceType/IMPD - PHDI - - - E1.13.11.- - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00465 - 17470 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - PHDJ - 17473 - http://www.bacillondex.org/cv/KEGG - 4-(2-carboxyphenyl)-2-oxobut-3-enoate aldolase [EC:4.1.2.34] - http://www.kegg.jp/dbget-bin/www_bget?K11949 - - - 17476 - aldehyde dehydrogenase [EC:1.2.1.-] - NIDD - http://www.kegg.jp/dbget-bin/www_bget?K11947 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - BPHD - 17479 - E3.7.1.8 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10222 - 2,6-dioxo-6-phenylhexa-3-enoate hydrolase [EC:3.7.1.8] - - - E1.3.1.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17482 - http://www.kegg.jp/dbget-bin/www_bget?K00224 - - - E1.12.1.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17485 - hydrogen dehydrogenase [EC:1.12.1.2] - http://www.kegg.jp/dbget-bin/www_bget?K00436 - - - http://www.kegg.jp/dbget-bin/www_bget?K00532+K00533+K00534+K06441 - http://www.bacillondex.org/evidenceType/IMPD - E1.12.7.2 - http://www.bacillondex.org/cv/KEGG - ferredoxin hydrogenase [EC:1.12.7.2] - 17488 - - - ferredoxin hydrogenase large subunit [EC:1.12.7.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00532+K00533+K00534+K06441 - 17491 - E1.12.7.2L - - - E1.12.7.2S - ferredoxin hydrogenase small subunit [EC:1.12.7.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17494 - http://www.kegg.jp/dbget-bin/www_bget?K00532+K00533+K00534+K06441 - - - E1.12.7.2G - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00532+K00533+K00534+K06441 - 17497 - ferredoxin hydrogenase gamma subunit [EC:1.12.7.2] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - E1.2.2.1 - http://www.bacillondex.org/evidenceType/IMPD - 17500 - http://www.kegg.jp/dbget-bin/www_bget?K04509 - formate dehydrogenase (cytochrome) [EC:1.2.2.1] - - - http://www.bacillondex.org/cv/KEGG - ALDB - 17503 - E1.2.1.21 - http://www.kegg.jp/dbget-bin/www_bget?K07248 - http://www.bacillondex.org/evidenceType/IMPD - glycolaldehyde dehydrogenase [EC:1.2.1.21] - ALDA - - - oxalyl-CoA decarboxylase [EC:4.1.1.8] - OXC - http://www.kegg.jp/dbget-bin/www_bget?K01577 - 17506 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17509 - http://www.kegg.jp/dbget-bin/www_bget?K00015 - E1.1.1.26 - glyoxylate reductase [EC:1.1.1.26] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E5.3.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17512 - http://www.kegg.jp/dbget-bin/www_bget?K01816 - GIP - hydroxypyruvate isomerase [EC:5.3.1.22] - - - http://www.bacillondex.org/cv/KEGG - isocitrate lyase [EC:4.1.3.1] - http://www.bacillondex.org/evidenceType/IMPD - E4.1.3.1 - ACEA - 17515 - http://www.kegg.jp/dbget-bin/www_bget?K01637 - - - http://www.kegg.jp/dbget-bin/www_bget?K01445 - E3.5.1.27 - N-formylmethionylaminoacyl-tRNA deformylase [EC:3.5.1.27] - 17518 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - E3.5.1.56 - N,N-dimethylformamidase [EC:3.5.1.56] - http://www.kegg.jp/dbget-bin/www_bget?K03418 - http://www.bacillondex.org/cv/KEGG - 17521 - - - http://www.kegg.jp/dbget-bin/www_bget?K01455 - 17524 - E3.5.1.49 - formamidase [EC:3.5.1.49] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01938 - 17527 - formate--tetrahydrofolate ligase [EC:6.3.4.3] - FHS - E6.3.4.3 - http://www.bacillondex.org/evidenceType/IMPD - - - 17530 - http://www.kegg.jp/dbget-bin/www_bget?K01601+K01602 - RBCL - ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.39S - RBCS - ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] - http://www.kegg.jp/dbget-bin/www_bget?K01601+K01602 - 17533 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01091 - GPH - E3.1.3.18 - phosphoglycolate phosphatase [EC:3.1.3.18] - 17536 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 17539 - http://www.kegg.jp/dbget-bin/www_bget?K03779+K03780 - http://www.bacillondex.org/evidenceType/IMPD - L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] - TTDA - - - L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32] - TTDB - http://www.bacillondex.org/evidenceType/IMPD - 17542 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03779+K03780 - - - 17545 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K08691 - http://www.bacillondex.org/cv/KEGG - E4.1.3.24 - malyl-CoA lyase [EC:4.1.3.24] - - - http://www.kegg.jp/dbget-bin/www_bget?K01608 - GCL - tartronate-semialdehyde synthase [EC:4.1.1.47] - 17548 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - malate-CoA ligase [EC:6.2.1.9] - E6.2.1.9 - http://www.kegg.jp/dbget-bin/www_bget?K08692 - 17551 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115 - BADD - E1.3.99.15D - 17554 - benzoyl-CoA reductase subunit [EC:1.3.99.15] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 17557 - http://www.bacillondex.org/cv/KEGG - E1.3.99.15E - BADE - benzoyl-CoA reductase subunit [EC:1.3.99.15] - http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115 - - - E1.3.99.15F - BADF - benzoyl-CoA reductase subunit [EC:1.3.99.15] - http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115 - 17560 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - BADG - E1.3.99.15G - http://www.bacillondex.org/evidenceType/IMPD - 17563 - benzoyl-CoA reductase subunit [EC:1.3.99.15] - http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10215 - monooxygenase [EC:1.14.13.-] - ETHA - http://www.bacillondex.org/evidenceType/IMPD - 17566 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E5.5.1.- - 17569 - http://www.kegg.jp/dbget-bin/www_bget?K03463 - - - 17572 - acetate CoA-transferase alpha subunit [EC:2.8.3.8] - http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035 - ATOD - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035 - http://www.bacillondex.org/cv/KEGG - ATOA - acetate CoA-transferase beta subunit [EC:2.8.3.8] - 17575 - http://www.bacillondex.org/evidenceType/IMPD - - - 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-] - 17578 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - BADI - http://www.kegg.jp/dbget-bin/www_bget?K07536 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04110 - http://www.bacillondex.org/cv/KEGG - BADA - E6.2.1.25 - 17581 - benzoate-CoA ligase [EC:6.2.1.25] - - - http://www.kegg.jp/dbget-bin/www_bget?K08686 - http://www.bacillondex.org/evidenceType/IMPD - 2-chlorobenzoate 1,2-dioxygenase [EC:1.14.12.13] - E1.14.12.13 - http://www.bacillondex.org/cv/KEGG - 17584 - - - 2-aminobenzoate-CoA ligase [EC:6.2.1.32] - http://www.bacillondex.org/cv/KEGG - 17587 - http://www.kegg.jp/dbget-bin/www_bget?K08295 - ABMG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - E4.2.1.100 - cyclohexa-1,5-dienecarbonyl-CoA hydratase [EC:4.2.1.100] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07537 - 17590 - - - 17593 - BBSG - http://www.kegg.jp/dbget-bin/www_bget?K07545 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - (R)-benzylsuccinyl-CoA dehydro genase [EC:1.3.99.21] - E1.3.99.21 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - BBSC - 17596 - 2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase BbsC subunit[EC:1.1.1.35] - http://www.kegg.jp/dbget-bin/www_bget?K07547+K07548 - - - 17599 - 2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase BbsD subunit[EC:1.1.1.35] - BBSD - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07547+K07548 - - - BADH - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07535 - 17602 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07534 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17605 - BADK - cyclohex-1-ene-1-carboxyl-CoA hydratase [EC:4.2.1.-] - - - 17608 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.61 - 4-hydroxybenzoate decarboxylase [EC:4.1.1.61] - http://www.kegg.jp/dbget-bin/www_bget?K01612 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17611 - benzylsuccinate synthase [EC:4.1.99.11] - http://www.kegg.jp/dbget-bin/www_bget?K07540 - E4.1.99.11 - - - 17614 - http://www.kegg.jp/dbget-bin/www_bget?K07549+K07550 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - BBSA - benzoylsuccinyl-CoA thiolase BbsA subunit [EC:2.3.1.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07549+K07550 - http://www.bacillondex.org/evidenceType/IMPD - 17617 - benzoylsuccinyl-CoA thiolase BbsB subunit [EC:2.3.1.-] - BBSB - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04104 - E6.4.1.- - 17620 - - - http://www.bacillondex.org/cv/KEGG - E1.3.99.20B - 4-hydroxybenzoyl-CoA reductase subunit 1 [EC:1.3.99.20] - http://www.kegg.jp/dbget-bin/www_bget?K04107+K04108+K04109 - http://www.bacillondex.org/evidenceType/IMPD - 17623 - HBAB - - - http://www.kegg.jp/dbget-bin/www_bget?K04107+K04108+K04109 - http://www.bacillondex.org/evidenceType/IMPD - 4-hydroxybenzoyl-CoA reductase subunit 2 [EC:1.3.99.20] - E1.3.99.20C - http://www.bacillondex.org/cv/KEGG - HBAC - 17626 - - - 17629 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04107+K04108+K04109 - HBAD - 4-hydroxybenzoyl-CoA reductase subunit 3 [EC:1.3.99.20] - http://www.bacillondex.org/cv/KEGG - E1.3.99.20D - - - benzylsuccinate CoA-transferase BbsE subunit [EC:2.8.3.15] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17632 - http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544 - E2.8.3.15E - BBSE - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544 - E2.8.3.15F - BBSF - 17635 - http://www.bacillondex.org/evidenceType/IMPD - benzylsuccinate CoA-transferase BbsF subunit [EC:2.8.3.15] - - - cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-] - 17638 - http://www.kegg.jp/dbget-bin/www_bget?K04117 - http://www.bacillondex.org/cv/KEGG - ALIB - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 17641 - http://www.kegg.jp/dbget-bin/www_bget?K04116 - ALIA - http://www.bacillondex.org/cv/KEGG - cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07546 - BBSH - E-phenylitaconyl-CoA hydratase [EC:4.2.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17644 - - - http://www.bacillondex.org/cv/KEGG - 4-hydroxybenzoate-CoA ligase [EC:6.2.1.27] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04105 - HBAA - E6.2.1.27 - 17647 - - - pimeloyl-CoA dehydrogenase [EC:1.3.1.62] - E1.3.1.62 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04118 - http://www.bacillondex.org/evidenceType/IMPD - 17650 - - - http://www.bacillondex.org/evidenceType/IMPD - 6-oxo-cyclohex-1-ene-carbonyl-CoA hydrolase [EC:3.7.1.-] - OAH - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07539 - 17653 - - - http://www.kegg.jp/dbget-bin/www_bget?K07538 - 17656 - HAD - 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase [EC:1.1.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 17659 - E4.1.1.70 - http://www.kegg.jp/dbget-bin/www_bget?K01615 - glutaconyl-CoA decarboxylase [EC:4.1.1.70] - http://www.bacillondex.org/evidenceType/IMPD - - - 17662 - succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - http://www.kegg.jp/dbget-bin/www_bget?K01899+K01900 - LSC1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - succinyl-CoA synthetase beta subunit [EC:6.2.1.4 6.2.1.5] - LSC2 - http://www.kegg.jp/dbget-bin/www_bget?K01899+K01900 - 17665 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K03417 - 17668 - http://www.bacillondex.org/cv/KEGG - PRPB - E4.1.3.30 - methylisocitrate lyase [EC:4.1.3.30] - http://www.bacillondex.org/evidenceType/IMPD - - - 2-methylcitrate synthase [EC:2.3.3.5] - http://www.bacillondex.org/cv/KEGG - PRPC - http://www.bacillondex.org/evidenceType/IMPD - 17671 - E2.3.3.5 - http://www.kegg.jp/dbget-bin/www_bget?K01659 - - - 2-methylisocitrate dehydratase [EC:4.2.1.99] - E4.2.1.99 - http://www.bacillondex.org/evidenceType/IMPD - 17674 - http://www.kegg.jp/dbget-bin/www_bget?K05608 - http://www.bacillondex.org/cv/KEGG - - - 17677 - http://www.bacillondex.org/evidenceType/IMPD - TDCD - E2.7.2.15 - http://www.bacillondex.org/cv/KEGG - propionate kinase [EC:2.7.2.15] - PDUW - http://www.kegg.jp/dbget-bin/www_bget?K00932 - - - http://www.kegg.jp/dbget-bin/www_bget?K01908 - E6.2.1.17 - propionyl-CoA synthetase [EC:6.2.1.17] - 17680 - http://www.bacillondex.org/evidenceType/IMPD - PRPE - http://www.bacillondex.org/cv/KEGG - - - E2.1.3.1 - 17683 - methylmalonyl-CoA carboxyltransferase [EC:2.1.3.1] - http://www.kegg.jp/dbget-bin/www_bget?K03416 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - E4.1.1.41 - http://www.kegg.jp/dbget-bin/www_bget?K01603+K01604+K01605+K01606+K11264 - 17686 - methylmalonyl-CoA decarboxylase [EC:4.1.1.41] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 17689 - E4.1.1.41A - methylmalonyl-CoA decarboxylase alpha chain [EC:4.1.1.41] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01603+K01604+K01605+K01606+K11264 - MMDA - - - MMDB - methylmalonyl-CoA decarboxylase beta chain [EC:4.1.1.41] - E4.1.1.41B - http://www.kegg.jp/dbget-bin/www_bget?K01603+K01604+K01605+K01606+K11264 - 17692 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - MMDC - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.1.1.41G - 17695 - http://www.kegg.jp/dbget-bin/www_bget?K01603+K01604+K01605+K01606+K11264 - methylmalonyl-CoA decarboxylase gamma chain [EC:4.1.1.41] - - - http://www.kegg.jp/dbget-bin/www_bget?K01603+K01604+K01605+K01606+K11264 - methylmalonyl-CoA decarboxylase [EC:4.1.1.41] - http://www.bacillondex.org/cv/KEGG - MMCD - http://www.bacillondex.org/evidenceType/IMPD - 17698 - - - http://www.kegg.jp/dbget-bin/www_bget?K01505 - http://www.bacillondex.org/evidenceType/IMPD - 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] - E3.5.99.7 - 17701 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - medium-chain acyl-CoA synthetase [EC:6.2.1.2] - ACSM - http://www.kegg.jp/dbget-bin/www_bget?K01896 - 17704 - - - maleate isomerase [EC:5.2.1.1] - E5.2.1.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01799 - 17707 - - - 17710 - E1.1.1.61 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00043 - 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] - http://www.bacillondex.org/cv/KEGG - - - E1.3.99.2 - butyryl-CoA dehydrogenase [EC:1.3.99.2] - http://www.bacillondex.org/evidenceType/IMPD - 17713 - http://www.kegg.jp/dbget-bin/www_bget?K00248 - http://www.bacillondex.org/cv/KEGG - BCD - - - hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07518 - 17716 - E3.1.1.22 - - - ACSA - AACS - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01907 - 17719 - http://www.bacillondex.org/evidenceType/IMPD - acetoacetyl-CoA synthetase [EC:6.2.1.16] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00109 - 17722 - 2-hydroxyglutarate dehydrogenase [EC:1.1.99.2] - E1.1.99.2 - - - http://www.kegg.jp/dbget-bin/www_bget?K01039+K01040 - E2.8.3.12A - 17725 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - GCTA - glutaconate CoA-transferase, subunit A [EC:2.8.3.12] - - - http://www.kegg.jp/dbget-bin/www_bget?K01039+K01040 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - GCTB - glutaconate CoA-transferase, subunit B [EC:2.8.3.12] - 17728 - E2.8.3.12B - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03821 - 17731 - polyhydroxyalkanoate synthase [EC:2.3.1.-] - http://www.bacillondex.org/evidenceType/IMPD - PHAC - PHBC - - - poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] - PHAZ - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05973 - E3.1.1.75 - 17734 - - - acetoacetyl-CoA reductase [EC:1.1.1.36] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17737 - http://www.kegg.jp/dbget-bin/www_bget?K00023 - PHBB - E1.1.1.36 - - - E4.2.1.55 - 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] - CRT - http://www.bacillondex.org/cv/KEGG - 17740 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01715 - - - (R,R)-butanediol dehydrogenase [EC:1.1.1.4] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00004 - http://www.bacillondex.org/evidenceType/IMPD - 17743 - E1.1.1.4 - - - 17746 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E4.3.1.2 - http://www.kegg.jp/dbget-bin/www_bget?K04835 - methylaspartate ammonia-lyase [EC:4.3.1.2] - - - http://www.kegg.jp/dbget-bin/www_bget?K01846 - http://www.bacillondex.org/evidenceType/IMPD - 17749 - http://www.bacillondex.org/cv/KEGG - E5.4.99.1 - methylaspartate mutase [EC:5.4.99.1] - - - FTHFD - http://www.kegg.jp/dbget-bin/www_bget?K00289 - E1.5.1.6 - http://www.bacillondex.org/cv/KEGG - formyltetrahydrofolate dehydrogenase [EC:1.5.1.6] - http://www.bacillondex.org/evidenceType/IMPD - 17752 - - - E1.5.1.15 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00295 - http://www.bacillondex.org/evidenceType/IMPD - methylenetetrahydrofolate dehydrogenase (NAD+) [EC:1.5.1.15] - 17755 - - - http://www.kegg.jp/dbget-bin/www_bget?K01746 - E4.3.1.4 - http://www.bacillondex.org/evidenceType/IMPD - formiminotetrahydrofolate cyclodeaminase [EC:4.3.1.4] - http://www.bacillondex.org/cv/KEGG - 17758 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.4.99.3 - 17761 - http://www.kegg.jp/dbget-bin/www_bget?K08685 - http://www.bacillondex.org/cv/KEGG - amine dehydrogenase [EC:1.4.99.3] - - - carbon-monoxide dehydrogenase alpha subunit [EC:1.2.99.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17764 - CDHA - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - E1.2.99.2A - - - http://www.bacillondex.org/cv/KEGG - CDHC - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - E1.2.99.2B - 17767 - http://www.bacillondex.org/evidenceType/IMPD - carbon-monoxide dehydrogenase beta subunit [EC:1.2.99.2] - - - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - carbon-monoxide dehydrogenase delta subunit [EC:1.2.99.2] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - CDHD - 17770 - E1.2.99.2D - - - http://www.bacillondex.org/evidenceType/IMPD - 17773 - E1.2.99.2E - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - carbon-monoxide dehydrogenase epsilon subunit [EC:1.2.99.2] - http://www.bacillondex.org/cv/KEGG - CDHB - - - COOF - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - carbon-monoxide dehydrogenase iron sulfur subunit - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E1.2.99.2F - 17776 - - - http://www.bacillondex.org/cv/KEGG - E1.2.99.2G - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - http://www.bacillondex.org/evidenceType/IMPD - carbon-monoxide dehydrogenase gamma subunit [EC:1.2.99.2] - 17779 - CDHE - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.99.2] - COOS - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - E1.2.99.2C - 17782 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.2.99.2S - COXS - carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2] - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - http://www.bacillondex.org/cv/KEGG - 17785 - - - carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] - 17788 - E1.2.99.2M - CUTM - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - COXM - - - carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2] - http://www.bacillondex.org/cv/KEGG - 17791 - http://www.kegg.jp/dbget-bin/www_bget?K00192+K00193+K00194+K00195+K00196+K00197+K00198+K03518+K03519+K03520 - COXL - http://www.bacillondex.org/evidenceType/IMPD - E1.2.99.2L - CUTL - - - 17794 - E1.14.13.25 - methane monooxygenase [EC:1.14.13.25] - http://www.kegg.jp/dbget-bin/www_bget?K08684 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K11174 - http://www.bacillondex.org/cv/KEGG - E1.2.7.4 - 17797 - carbon-monoxide dehydrogenase (ferredoxin) [EC:1.2.7.4] - - - E2.3.1.169 - CO-methylating acetyl-CoA synthase [EC:2.3.1.169] - 17800 - http://www.kegg.jp/dbget-bin/www_bget?K00191 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - formate dehydrogenase (NADP+) [EC:1.2.1.43] - 17803 - http://www.kegg.jp/dbget-bin/www_bget?K05299 - E1.2.1.43 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03396 - S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22] - http://www.bacillondex.org/cv/KEGG - 17806 - E4.4.1.22 - - - methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] - http://www.bacillondex.org/evidenceType/IMPD - MTDB - http://www.bacillondex.org/cv/KEGG - 17809 - http://www.kegg.jp/dbget-bin/www_bget?K10714 - - - http://www.kegg.jp/dbget-bin/www_bget?K00352 - trimethylamine-N-oxide reductase [EC:1.6.6.9] - 17812 - http://www.bacillondex.org/cv/KEGG - E1.6.6.9 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - trimethylamine dehydrogenase [EC:1.5.8.2] - http://www.kegg.jp/dbget-bin/www_bget?K00317 - http://www.bacillondex.org/evidenceType/IMPD - E1.5.8.2 - 17815 - - - FAE - 17818 - http://www.bacillondex.org/evidenceType/IMPD - formaldehyde-activating enzyme [EC:4.3.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K10713 - http://www.bacillondex.org/cv/KEGG - - - 17821 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01070 - S-formylglutathione hydrolase [EC:3.1.2.12] - http://www.bacillondex.org/evidenceType/IMPD - E3.1.2.12 - - - MCH - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01499 - 17824 - E3.5.4.27 - http://www.bacillondex.org/evidenceType/IMPD - methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] - - - E1.1.1.244 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00093 - methanol dehydrogenase [EC:1.1.1.244] - 17827 - http://www.bacillondex.org/evidenceType/IMPD - - - E1.2.1.46 - glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17830 - http://www.kegg.jp/dbget-bin/www_bget?K00148 - - - http://www.bacillondex.org/evidenceType/IMPD - FTR - formylmethanofuran--tetrahydromethanopterin N-formyltransferase[EC:2.3.1.101] - E2.3.1.101 - 17833 - http://www.kegg.jp/dbget-bin/www_bget?K00672 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - thiamine-triphosphatase [EC:3.6.1.28] - E3.6.1.28 - http://www.kegg.jp/dbget-bin/www_bget?K05307 - http://www.bacillondex.org/evidenceType/IMPD - 17836 - - - THIK - thiamine kinase [EC:2.7.1.89] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07251 - 17839 - - - thiamine pyridinylase [EC:2.5.1.2] - 17842 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10811 - E2.5.1.2 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 17845 - http://www.kegg.jp/dbget-bin/www_bget?K00768 - COBT - http://www.bacillondex.org/cv/KEGG - COBU - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase [EC:2.4.2.21] - E2.4.2.21 - - - http://www.kegg.jp/dbget-bin/www_bget?K01078+K01093+K03788+K09474 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 17848 - E3.1.3.2 - acid phosphatase [EC:3.1.3.2] - - - http://www.bacillondex.org/cv/KEGG - 17851 - APHA - http://www.kegg.jp/dbget-bin/www_bget?K01078+K01093+K03788+K09474 - acid phosphatase (class B) [EC:3.1.3.2] - http://www.bacillondex.org/evidenceType/IMPD - - - PHON - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - acid phosphatase (class A) [EC:3.1.3.2] - http://www.kegg.jp/dbget-bin/www_bget?K01078+K01093+K03788+K09474 - 17854 - - - 17857 - http://www.bacillondex.org/evidenceType/IMPD - RFK - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07732 - riboflavin kinase, archaea type [EC:2.7.1.161] - - - http://www.kegg.jp/dbget-bin/www_bget?K00275 - http://www.bacillondex.org/cv/KEGG - PDXH - PNPO - 17860 - http://www.bacillondex.org/evidenceType/IMPD - pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] - - - http://www.bacillondex.org/cv/KEGG - pyridoxine 4-dehydrogenase [EC:1.1.1.65] - 17863 - E1.1.1.65 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05275 - - - http://www.kegg.jp/dbget-bin/www_bget?K03474 - pyridoxine 5-phosphate synthase [EC:2.6.99.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17866 - PDXJ - - - pyridoxal phosphatase [EC:3.1.3.74] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07758+K13248 - PDXP - http://www.bacillondex.org/cv/KEGG - 17869 - - - pyridoxal phosphate phosphatase PHOSPHO2 [EC:3.1.3.74] - 17872 - http://www.bacillondex.org/cv/KEGG - PHOSPHO2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07758+K13248 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - PDXK - pyridoxine kinase [EC:2.7.1.35] - 17875 - PDXY - http://www.kegg.jp/dbget-bin/www_bget?K00868 - - - 17878 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] - PDXB - http://www.kegg.jp/dbget-bin/www_bget?K03473 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03472 - D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] - http://www.bacillondex.org/cv/KEGG - EPD - 17881 - - - http://www.bacillondex.org/cv/KEGG - 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] - http://www.bacillondex.org/evidenceType/IMPD - PDXA - http://www.kegg.jp/dbget-bin/www_bget?K00097 - 17884 - - - http://www.bacillondex.org/cv/KEGG - E2.1.1.1 - http://www.kegg.jp/dbget-bin/www_bget?K00541 - NNMT - http://www.bacillondex.org/evidenceType/IMPD - nicotinamide N-methyltransferase [EC:2.1.1.1] - 17887 - - - 17890 - E3.2.2.5 - http://www.kegg.jp/dbget-bin/www_bget?K01242 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - NAD+ nucleosidase [EC:3.2.2.5] - - - NAD+ diphosphatase [EC:3.6.1.22] - http://www.bacillondex.org/evidenceType/IMPD - 17893 - http://www.kegg.jp/dbget-bin/www_bget?K03426 - http://www.bacillondex.org/cv/KEGG - NUDC - NUDT12 - E3.6.1.22 - - - NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] - PNTA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17896 - E1.6.1.2A - http://www.kegg.jp/dbget-bin/www_bget?K00324+K00325 - - - PNTB - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00324+K00325 - 17899 - NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] - E1.6.1.2B - http://www.bacillondex.org/evidenceType/IMPD - - - nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] - http://www.bacillondex.org/evidenceType/IMPD - 17902 - http://www.kegg.jp/dbget-bin/www_bget?K00952+K06210 - E2.7.7.1 - http://www.bacillondex.org/cv/KEGG - NADR - - - 17905 - http://www.kegg.jp/dbget-bin/www_bget?K00952+K06210 - K06210 - ribosylnicotinamide kinase domain of NadR - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K03462 - E2.4.2.12 - nicotinamide phosphoribosyltransferase [EC:2.4.2.12] - 17908 - http://www.bacillondex.org/evidenceType/IMPD - PBEF1 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - NADSYN1 - E6.3.5.1 - NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] - NADE - http://www.bacillondex.org/evidenceType/IMPD - 17911 - http://www.kegg.jp/dbget-bin/www_bget?K01950 - QNS1 - - - http://www.kegg.jp/dbget-bin/www_bget?K01440 - 17914 - http://www.bacillondex.org/evidenceType/IMPD - nicotinamidase [EC:3.5.1.19] - E3.5.1.19 - http://www.bacillondex.org/cv/KEGG - - - nicotinamide riboside kinase 1 [EC:2.7.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K10524 - NRK1 - 17917 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17920 - acyl carrier protein phosphodiesterase [EC:3.1.4.14] - http://www.kegg.jp/dbget-bin/www_bget?K08682 - http://www.bacillondex.org/evidenceType/IMPD - E3.1.4.14 - ACPH - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K08069 - pantetheine hydrolase [EC:3.5.1.92] - E3.5.1.92 - VNN1 - 17923 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - biotin--protein ligase [EC:6.3.4.9 6.3.4.10 6.3.4.11 6.3.4.15] - 17926 - http://www.kegg.jp/dbget-bin/www_bget?K01942 - HLCS - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 17929 - BTD - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01435 - biotinidase [EC:3.5.1.12] - - - 17932 - LIPB - http://www.kegg.jp/dbget-bin/www_bget?K03801 - lipoyl(octanoyl) transferase [EC:2.3.1.181] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 17935 - methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1] - MCRA - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - methyl coenzyme M reductase system, component A2 - http://www.bacillondex.org/cv/KEGG - 17938 - K00400 - - - methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - MCRB - 17941 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - MCRG - methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1] - 17944 - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - methyl-coenzyme M reductase subunit C - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - http://www.bacillondex.org/evidenceType/IMPD - MCRC - 17947 - - - methyl-coenzyme M reductase subunit D - 17950 - MCRD - http://www.kegg.jp/dbget-bin/www_bget?K00399+K00400+K00401+K00402+K03421+K03422 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K01307 - GGH - 17953 - http://www.bacillondex.org/cv/KEGG - E3.4.19.9 - http://www.bacillondex.org/evidenceType/IMPD - gamma-glutamyl hydrolase [EC:3.4.19.9] - - - SPR - http://www.bacillondex.org/cv/KEGG - 17956 - sepiapterin reductase [EC:1.1.1.153] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00072 - E1.1.1.153 - - - E1.5.99.9 - http://www.bacillondex.org/cv/KEGG - 17959 - http://www.bacillondex.org/evidenceType/IMPD - methylenetetrahydromethanopterin dehydrogenase [EC:1.5.99.9] - MTD - http://www.kegg.jp/dbget-bin/www_bget?K00319 - - - http://www.kegg.jp/dbget-bin/www_bget?K03388+K03389+K03390+K08264+K08265 - heterodisulfide reductase subunit A [EC:1.8.98.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 17962 - E1.8.98.1A - - - http://www.bacillondex.org/evidenceType/IMPD - heterodisulfide reductase subunit B [EC:1.8.98.1] - E1.8.98.1B - 17965 - http://www.kegg.jp/dbget-bin/www_bget?K03388+K03389+K03390+K08264+K08265 - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K03388+K03389+K03390+K08264+K08265 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E1.8.98.1C - 17968 - heterodisulfide reductase subunit C [EC:1.8.98.1] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03388+K03389+K03390+K08264+K08265 - 17971 - http://www.bacillondex.org/evidenceType/IMPD - heterodisulfide reductase subunit D [EC:1.8.98.1] - E1.8.98.1D - - - 17974 - http://www.bacillondex.org/evidenceType/IMPD - heterodisulfide reductase subunit E [EC:1.8.98.1] - E1.8.98.1E - http://www.kegg.jp/dbget-bin/www_bget?K03388+K03389+K03390+K08264+K08265 - http://www.bacillondex.org/cv/KEGG - - - tetrahydromethanopterin S-methyltransferase subunit A [EC:2.1.1.86] - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - http://www.bacillondex.org/evidenceType/IMPD - E2.1.1.86A - 17977 - http://www.bacillondex.org/cv/KEGG - MTRA - - - tetrahydromethanopterin S-methyltransferase subunit B [EC:2.1.1.86] - 17980 - E2.1.1.86B - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - MTRB - - - http://www.bacillondex.org/cv/KEGG - 17983 - MTRC - tetrahydromethanopterin S-methyltransferase subunit C [EC:2.1.1.86] - E2.1.1.86C - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - E2.1.1.86D - 17986 - MTRD - tetrahydromethanopterin S-methyltransferase subunit D [EC:2.1.1.86] - - - 17989 - tetrahydromethanopterin S-methyltransferase subunit E [EC:2.1.1.86] - MTRE - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - http://www.bacillondex.org/cv/KEGG - E2.1.1.86E - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - tetrahydromethanopterin S-methyltransferase subunit F [EC:2.1.1.86] - MTRF - 17992 - E2.1.1.86F - http://www.bacillondex.org/evidenceType/IMPD - - - MTRG - http://www.bacillondex.org/cv/KEGG - 17995 - E2.1.1.86G - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - http://www.bacillondex.org/evidenceType/IMPD - tetrahydromethanopterin S-methyltransferase subunit G [EC:2.1.1.86] - - - MTRH - http://www.kegg.jp/dbget-bin/www_bget?K00577+K00578+K00579+K00580+K00581+K00582+K00583+K00584 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - tetrahydromethanopterin S-methyltransferase subunit H [EC:2.1.1.86] - 17998 - E2.1.1.86H - - - dihydrofolate synthase [EC:6.3.2.12] - 18001 - http://www.kegg.jp/dbget-bin/www_bget?K01927+K11754 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E6.3.2.12 - - - 18004 - dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.126.3.2.17] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01927+K11754 - http://www.bacillondex.org/evidenceType/IMPD - FOLC - - - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - http://www.bacillondex.org/cv/KEGG - E1.2.99.5A - formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] - http://www.bacillondex.org/evidenceType/IMPD - FMDA - 18007 - FWDA - - - formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] - E1.2.99.5B - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - FMDB - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - FWDB - 18010 - - - FWDC - FMDC - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18013 - E1.2.99.5C - formylmethanofuran dehydrogenase subunit C [EC:1.2.99.5] - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - - - formylmethanofuran dehydrogenase subunit D [EC:1.2.99.5] - http://www.bacillondex.org/evidenceType/IMPD - FWDD - FMDD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - 18016 - E1.2.99.5D - - - formylmethanofuran dehydrogenase subunit H [EC:1.2.99.5] - FWDH - 18019 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - E1.2.99.5H - http://www.bacillondex.org/evidenceType/IMPD - - - FMDF - http://www.bacillondex.org/cv/KEGG - FWDF - http://www.bacillondex.org/evidenceType/IMPD - 18022 - E1.2.99.5F - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - formylmethanofuran dehydrogenase subunit F [EC:1.2.99.5] - - - http://www.bacillondex.org/evidenceType/IMPD - FWDG - formylmethanofuran dehydrogenase subunit G [EC:1.2.99.5] - 18025 - E1.2.99.5G - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - E1.2.99.5E - 18028 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00200+K00201+K00202+K00203+K00204+K00205+K11260+K11261 - formylmethanofuran dehydrogenase subunit E [EC:1.2.99.5] - FMDE - - - FRHA - E1.12.98.1A - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - coenzyme F420 hydrogenase alpha subunit [EC:1.12.98.1] - http://www.kegg.jp/dbget-bin/www_bget?K00440+K00441+K00442+K00443 - 18031 - - - FRHB - http://www.bacillondex.org/cv/KEGG - coenzyme F420 hydrogenase beta subunit [EC:1.12.98.1] - http://www.kegg.jp/dbget-bin/www_bget?K00440+K00441+K00442+K00443 - 18034 - http://www.bacillondex.org/evidenceType/IMPD - E1.12.98.1B - - - http://www.kegg.jp/dbget-bin/www_bget?K00440+K00441+K00442+K00443 - E1.12.98.1D - http://www.bacillondex.org/evidenceType/IMPD - FRHD - coenzyme F420 hydrogenase delta subunit - http://www.bacillondex.org/cv/KEGG - 18037 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00440+K00441+K00442+K00443 - coenzyme F420 hydrogenase gamma subunit [EC:1.12.98.1] - E1.12.98.1G - 18040 - http://www.bacillondex.org/cv/KEGG - FRHG - - - 18043 - HMD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00320 - E1.5.99.11 - coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterinreductase [EC:1.5.99.11] - http://www.bacillondex.org/evidenceType/IMPD - - - ferroxidase [EC:1.16.3.1] - http://www.bacillondex.org/cv/KEGG - E1.16.3.1 - CP - 18046 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00522 - - - E1.3.1.33 - POR - 18049 - protochlorophyllide reductase [EC:1.3.1.33] - http://www.kegg.jp/dbget-bin/www_bget?K00218 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 18052 - light-independent protochlorophyllide reductase subunit L[EC:1.18.-.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04037+K04038+K04039 - CHLL - - - light-independent protochlorophyllide reductase subunit N[EC:1.18.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K04037+K04038+K04039 - CHLN - 18055 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K04037+K04038+K04039 - 18058 - light-independent protochlorophyllide reductase subunit B[EC:1.18.-.-] - CHLB - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.3.7.4 - http://www.bacillondex.org/evidenceType/IMPD - 18061 - http://www.kegg.jp/dbget-bin/www_bget?K08101 - http://www.bacillondex.org/cv/KEGG - phytochromobilin:ferredoxin oxidoreductase [EC:1.3.7.4] - - - http://www.bacillondex.org/evidenceType/IMPD - 18064 - http://www.kegg.jp/dbget-bin/www_bget?K01764 - http://www.bacillondex.org/cv/KEGG - E4.4.1.17 - cytochrome c heme-lyase [EC:4.4.1.17] - - - adenosylcobinamide kinase / adenosylcobinamide-phosphateguanylyltransferase [EC:2.7.1.156 2.7.7.62] - COBU - COBP - http://www.kegg.jp/dbget-bin/www_bget?K02231 - 18067 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - E4.1.1.81 - http://www.kegg.jp/dbget-bin/www_bget?K04720 - 18070 - http://www.bacillondex.org/evidenceType/IMPD - COBD - threonine-phosphate decarboxylase [EC:4.1.1.81] - - - COBV - adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] - COBS - 18073 - E2.7.8.26 - http://www.kegg.jp/dbget-bin/www_bget?K02233 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - COBC2 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02226 - 18076 - alpha-ribazole phosphatase [EC:3.1.3.73] - COBC - PHPB - http://www.bacillondex.org/evidenceType/IMPD - - - ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.17] - 18079 - EUTT - http://www.kegg.jp/dbget-bin/www_bget?K04032 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - divinyl protochlorophyllide a 8-vinyl-reductase [EC:1.-.-.-] - BCHJ - http://www.kegg.jp/dbget-bin/www_bget?K04036 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18082 - - - anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase[EC:4.-.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K04034 - BCHE - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18085 - - - http://www.bacillondex.org/evidenceType/IMPD - CHLE - ACSF - E1.14.13.81 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04035 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase[EC:1.14.13.81] - 18088 - - - 18091 - COBC - cobalamin biosynthetic protein CobC - http://www.kegg.jp/dbget-bin/www_bget?K02225+K02227 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - COBC1 - - - http://www.bacillondex.org/cv/KEGG - CBIB - 18094 - E6.3.1.10 - http://www.bacillondex.org/evidenceType/IMPD - COBD - http://www.kegg.jp/dbget-bin/www_bget?K02225+K02227 - adenosylcobinamide-phosphate synthase CobD [EC:6.3.1.10] - - - 18097 - magnesium chelatase [EC:6.6.1.1] - CHLH - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03403+K03404+K03405 - - - 18100 - http://www.bacillondex.org/evidenceType/IMPD - magnesium chelatase subunit ChlD [EC:6.6.1.1] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03403+K03404+K03405 - CHLD - - - CHLI - magnesium chelatase subunit ChlI [EC:6.6.1.1] - http://www.bacillondex.org/cv/KEGG - 18103 - http://www.kegg.jp/dbget-bin/www_bget?K03403+K03404+K03405 - http://www.bacillondex.org/evidenceType/IMPD - - - CHLM - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18106 - magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11] - E2.1.1.11 - http://www.kegg.jp/dbget-bin/www_bget?K03428 - - - precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase[EC:2.1.1.132 1.-.-.-] - 18109 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00595 - COBL - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02189 - http://www.bacillondex.org/cv/KEGG - 18112 - CBIG - cobalamin biosynthesis protein CbiG - - - 18115 - http://www.bacillondex.org/cv/KEGG - CBID - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02188 - cobalamin biosynthesis protein CbiD - - - E2.1.1.133 - precorrin-4 C11-methyltransferase [EC:2.1.1.133] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - COBM - CBIF - 18118 - http://www.kegg.jp/dbget-bin/www_bget?K05936 - - - http://www.kegg.jp/dbget-bin/www_bget?K05934 - http://www.bacillondex.org/evidenceType/IMPD - 18121 - E2.1.1.131 - COBJ - http://www.bacillondex.org/cv/KEGG - CBIH - precorrin-3B C17-methyltransferase [EC:2.1.1.131] - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03394 - cobalt-factor-2 C20-methyltransferase [EC:2.1.1.151] - 18124 - CBIL - - - http://www.kegg.jp/dbget-bin/www_bget?K02190+K03795 - 18127 - CBIK - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - sirohydrochlorin cobaltochelatase [EC:4.99.1.3] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02190+K03795 - CBIX - 18130 - http://www.bacillondex.org/evidenceType/IMPD - sirohydrochlorin cobaltochelatase [EC:4.99.1.3] - - - EARS - 18133 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - glutamyl-tRNA synthetase [EC:6.1.1.17] - GLTX - http://www.kegg.jp/dbget-bin/www_bget?K01885 - - - E1.14.99.3 - 18136 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00510 - heme oxygenase [EC:1.14.99.3] - - - http://www.bacillondex.org/cv/KEGG - E1.3.1.54 - CBIJ - precorrin-6X reductase [EC:1.3.1.54] - http://www.kegg.jp/dbget-bin/www_bget?K05895 - http://www.bacillondex.org/evidenceType/IMPD - 18139 - COBK - - - E2.1.1.152 - COBF - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02228 - 18142 - precorrin-6A synthase [EC:2.1.1.152] - - - E5.4.1.2 - http://www.kegg.jp/dbget-bin/www_bget?K06042 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18145 - precorrin-8X methylmutase [EC:5.4.1.2] - CBIC - COBH - - - CBIE - http://www.bacillondex.org/evidenceType/IMPD - precorrin-6Y C5,15-methyltransferase [EC:2.1.1.132] - http://www.bacillondex.org/cv/KEGG - 18148 - http://www.kegg.jp/dbget-bin/www_bget?K03399 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18151 - CBIT - precorrin-8W decarboxylase [EC:1.-.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K02191 - - - http://www.bacillondex.org/cv/KEGG - COBI - http://www.bacillondex.org/evidenceType/IMPD - 18154 - http://www.kegg.jp/dbget-bin/www_bget?K00593 - precorrin-2 C20-methyltransferase [EC:2.1.1.130] - - - http://www.bacillondex.org/evidenceType/IMPD - 18157 - http://www.kegg.jp/dbget-bin/www_bget?K02229 - http://www.bacillondex.org/cv/KEGG - COBG - E1.14.13.83 - precorrin-3B synthase [EC:1.14.13.83] - - - http://www.kegg.jp/dbget-bin/www_bget?K00798 - cob(I)alamin adenosyltransferase [EC:2.5.1.17] - E2.5.1.17 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - COBO - 18160 - BTUR - - - E1.16.8.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K04719 - cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.1] - 18163 - - - http://www.kegg.jp/dbget-bin/www_bget?K08260 - http://www.bacillondex.org/cv/KEGG - E3.5.1.90 - adenosylcobinamide hydrolase [EC:3.5.1.90] - CBIZ - 18166 - http://www.bacillondex.org/evidenceType/IMPD - - - E6.3.5.10 - http://www.kegg.jp/dbget-bin/www_bget?K02232 - http://www.bacillondex.org/evidenceType/IMPD - CBIP - adenosylcobyric acid synthase [EC:6.3.5.10] - http://www.bacillondex.org/cv/KEGG - COBQ - 18169 - - - http://www.bacillondex.org/evidenceType/IMPD - 18172 - http://www.bacillondex.org/cv/KEGG - COBN - http://www.kegg.jp/dbget-bin/www_bget?K02230 - cobaltochelatase CobN [EC:6.6.1.2] - - - 18175 - COBB - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02224 - hydrogenobyrinic acid a,c-diamide synthase [EC:6.3.5.9] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 18178 - cobyrinic acid a,c-diamide synthase [EC:6.3.1.-] - CBIA - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03401 - - - 18181 - bilirubin oxidase [EC:1.3.3.5] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E1.3.3.5 - http://www.kegg.jp/dbget-bin/www_bget?K08100 - - - http://www.bacillondex.org/evidenceType/IMPD - phycoerythrobilin:ferredoxin oxidoreductase [EC:1.3.7.3] - 18184 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05370 - E1.3.7.3 - PEBB - - - http://www.kegg.jp/dbget-bin/www_bget?K05369 - 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [EC:1.3.7.2] - 18187 - http://www.bacillondex.org/evidenceType/IMPD - PEBA - http://www.bacillondex.org/cv/KEGG - E1.3.7.2 - - - http://www.bacillondex.org/cv/KEGG - CHLG - http://www.kegg.jp/dbget-bin/www_bget?K04040 - http://www.bacillondex.org/evidenceType/IMPD - chlorophyll synthase [EC:2.5.1.62] - 18190 - - - E3.1.1.14 - http://www.kegg.jp/dbget-bin/www_bget?K08099 - http://www.bacillondex.org/evidenceType/IMPD - 18193 - chlorophyllase [EC:3.1.1.14] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 18196 - UBIB - FRE - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05368 - aquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.31.5.1.29] - - - phycocyanobilin:ferredoxin oxidoreductase [EC:1.3.7.5] - http://www.kegg.jp/dbget-bin/www_bget?K05371 - E1.3.7.5 - 18199 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - HEMF - http://www.kegg.jp/dbget-bin/www_bget?K00228 - coproporphyrinogen III oxidase [EC:1.3.3.3] - E1.3.3.3 - 18202 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 18205 - http://www.bacillondex.org/evidenceType/IMPD - ISPB - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02523 - octaprenyl-diphosphate synthase [EC:2.5.1.-] - - - E2.5.1.29 - http://www.kegg.jp/dbget-bin/www_bget?K00804 - geranylgeranyl pyrophosphate synthetase [EC:2.5.1.29] - http://www.bacillondex.org/cv/KEGG - 18208 - http://www.bacillondex.org/evidenceType/IMPD - - - 18211 - MVK - E2.7.1.36 - mevalonate kinase [EC:2.7.1.36] - http://www.kegg.jp/dbget-bin/www_bget?K00869 - MVAK1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 18214 - E1.1.1.88 - hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00054 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00021 - 18217 - HMG1 - http://www.bacillondex.org/cv/KEGG - 3-hydroxy-3-methylglutaryl-CoA reductase [EC:1.1.1.34] - E1.1.1.34 - - - COQ1 - trans-pentaprenyltranstransferase [EC:2.5.1.33] - http://www.kegg.jp/dbget-bin/www_bget?K05355 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18220 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10960 - CHLP - BCHP - http://www.bacillondex.org/evidenceType/IMPD - geranylgeranyl reductase [EC:1.3.1.83] - 18223 - - - 18226 - http://www.bacillondex.org/cv/KEGG - DHDDS - http://www.bacillondex.org/evidenceType/IMPD - cis-prenyltransferase, dehydrodolichyl diphosphate synthase[EC:2.5.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K11778 - - - decaprenyl-diphosphate synthase subunit 1 [EC:2.5.1.-] - http://www.bacillondex.org/evidenceType/IMPD - PDSS1 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12504+K12505 - 18229 - - - PDSS2 - 18232 - http://www.bacillondex.org/evidenceType/IMPD - decaprenyl-diphosphate synthase subunit 2 [EC:2.5.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12504+K12505 - - - SDS - http://www.bacillondex.org/cv/KEGG - trans-octaprenyltranstransferase [EC:2.5.1.11] - 18235 - http://www.kegg.jp/dbget-bin/www_bget?K05356 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18238 - short-chain Z-isoprenyl diphosphate synthetase [EC:2.5.1.68] - http://www.kegg.jp/dbget-bin/www_bget?K12503 - E2.5.1.68 - - - E2.5.1.1 - http://www.bacillondex.org/evidenceType/IMPD - dimethylallyltranstransferase [EC:2.5.1.1] - http://www.kegg.jp/dbget-bin/www_bget?K00787 - 18241 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - isoprene synthase [EC:4.2.3.27] - http://www.kegg.jp/dbget-bin/www_bget?K12742 - http://www.bacillondex.org/cv/KEGG - 18244 - ISPS - - - 18247 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01597 - http://www.bacillondex.org/evidenceType/IMPD - MVAD - diphosphomevalonate decarboxylase [EC:4.1.1.33] - E4.1.1.33 - - - http://www.kegg.jp/dbget-bin/www_bget?K00938+K13273 - MVAK2 - http://www.bacillondex.org/cv/KEGG - phosphomevalonate kinase [EC:2.7.4.2] - http://www.bacillondex.org/evidenceType/IMPD - 18250 - E2.7.4.2 - - - http://www.bacillondex.org/evidenceType/IMPD - 18253 - http://www.bacillondex.org/cv/KEGG - phosphomevalonate kinase [EC:2.7.4.2] - PMVK - http://www.kegg.jp/dbget-bin/www_bget?K00938+K13273 - - - (R)-limonene 6-monooxygenase [EC:1.14.13.80] - E1.14.13.80 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18256 - http://www.kegg.jp/dbget-bin/www_bget?K07383 - - - 18259 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E1.14.13.48 - http://www.kegg.jp/dbget-bin/www_bget?K07381 - (S)-limonene 6-monooxygenase [EC:1.14.13.48] - - - (S)-limonene 7-monooxygenase [EC:1.14.13.49] - http://www.bacillondex.org/cv/KEGG - E1.14.13.49 - http://www.kegg.jp/dbget-bin/www_bget?K07382 - 18262 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00206 - 18265 - E1.2.-.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 18268 - http://www.kegg.jp/dbget-bin/www_bget?K00258 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - E1.3.-.- - - - limonene-1,2-epoxide hydrolase [EC:3.3.2.8] - E3.3.2.8 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10533 - 18271 - - - (+)-trans-carveol dehydrogenase [EC:1.1.1.275] - http://www.bacillondex.org/evidenceType/IMPD - E1.1.1.275 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12466 - 18274 - - - http://www.kegg.jp/dbget-bin/www_bget?K00531+K02586+K02588+K02591 - E1.18.6.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18277 - nitrogenase [EC:1.18.6.1] - - - http://www.kegg.jp/dbget-bin/www_bget?K00531+K02586+K02588+K02591 - http://www.bacillondex.org/evidenceType/IMPD - nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] - 18280 - http://www.bacillondex.org/cv/KEGG - NIFD - - - http://www.kegg.jp/dbget-bin/www_bget?K00531+K02586+K02588+K02591 - nitrogenase iron protein NifH [EC:1.18.6.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18283 - NIFH - - - http://www.bacillondex.org/cv/KEGG - nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] - NIFK - http://www.bacillondex.org/evidenceType/IMPD - 18286 - http://www.kegg.jp/dbget-bin/www_bget?K00531+K02586+K02588+K02591 - - - NIRA - http://www.bacillondex.org/evidenceType/IMPD - ferredoxin-nitrite reductase [EC:1.7.7.1] - 18289 - http://www.bacillondex.org/cv/KEGG - E1.7.7.1 - http://www.kegg.jp/dbget-bin/www_bget?K00366 - - - http://www.kegg.jp/dbget-bin/www_bget?K00376 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - NOSZ - nitrous-oxide reductase [EC:1.7.99.6] - 18292 - - - E1.19.6.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - nitrogenase (flavodoxin) [EC:1.19.6.1] - http://www.kegg.jp/dbget-bin/www_bget?K00536 - 18295 - - - http://www.bacillondex.org/cv/KEGG - nitric-oxide reductase NorE protein [EC:1.7.99.7] - 18298 - http://www.bacillondex.org/evidenceType/IMPD - NORE - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - - - http://www.bacillondex.org/evidenceType/IMPD - 18301 - nitric-oxide reductase, cytochrome c-containing subunit II[EC:1.7.99.7] - NORC - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - - - nitric-oxide reductase NorD protein [EC:1.7.99.7] - NORD - http://www.bacillondex.org/evidenceType/IMPD - 18304 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - - - http://www.bacillondex.org/cv/KEGG - nitric-oxide reductase, cytochrome b-containing subunit I[EC:1.7.99.7] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - NORB - 18307 - - - http://www.bacillondex.org/cv/KEGG - 18310 - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - http://www.bacillondex.org/evidenceType/IMPD - NORF - nitric-oxide reductase NorF protein [EC:1.7.99.7] - - - http://www.bacillondex.org/evidenceType/IMPD - NORQ - nitric-oxide reductase NorQ protein [EC:1.7.99.7] - http://www.bacillondex.org/cv/KEGG - 18313 - http://www.kegg.jp/dbget-bin/www_bget?K02164+K02305+K02448+K04561+K04747+K04748 - - - 18316 - NIAD - http://www.kegg.jp/dbget-bin/www_bget?K10534 - nitrate reductase (NADPH) [EC:1.7.1.3] - E1.7.1.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00367 - NARB - 18319 - E1.7.7.2 - http://www.bacillondex.org/evidenceType/IMPD - ferredoxin-nitrate reductase [EC:1.7.7.2] - - - http://www.kegg.jp/dbget-bin/www_bget?K00284 - 18322 - http://www.bacillondex.org/evidenceType/IMPD - GLTS - glutamate synthase (ferredoxin) [EC:1.4.7.1] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10774 - tyrosine ammonia-lyase [EC:4.3.1.23] - 18325 - E4.3.1.23 - http://www.bacillondex.org/cv/KEGG - - - 2-nitropropane dioxygenase [EC:1.13.11.32] - E1.13.11.32 - http://www.kegg.jp/dbget-bin/www_bget?K00459 - 18328 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - E1.7.99.1 - http://www.kegg.jp/dbget-bin/www_bget?K05601 - http://www.bacillondex.org/evidenceType/IMPD - hydroxylamine reductase [EC:1.7.99.1] - 18331 - http://www.bacillondex.org/cv/KEGG - - - ammonia monooxygenase subunit A [EC:1.13.12.-] - http://www.kegg.jp/dbget-bin/www_bget?K10944+K10945+K10946 - AMOA - 18334 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 18337 - http://www.bacillondex.org/evidenceType/IMPD - AMOB - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10944+K10945+K10946 - ammonia monooxygenase subunit B [EC:1.13.12.-] - - - ammonia monooxygenase subunit C [EC:1.13.12.-] - 18340 - http://www.kegg.jp/dbget-bin/www_bget?K10944+K10945+K10946 - AMOC - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 18343 - http://www.kegg.jp/dbget-bin/www_bget?K03385 - NRFA - formate-dependent nitrite reductase, periplasmic cytochrome c552subunit [EC:1.7.2.2] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 18346 - http://www.kegg.jp/dbget-bin/www_bget?K00360 - E1.7.1.1 - http://www.bacillondex.org/evidenceType/IMPD - nitrate reductase (NADH) [EC:1.7.1.1] - - - http://www.bacillondex.org/evidenceType/IMPD - 18349 - http://www.bacillondex.org/cv/KEGG - hydroxylamine oxidase [EC:1.7.3.4] - http://www.kegg.jp/dbget-bin/www_bget?K10535 - E1.7.3.4 - - - http://www.kegg.jp/dbget-bin/www_bget?K01725 - cyanate lyase [EC:4.2.1.104] - CYNS - E4.2.1.104 - http://www.bacillondex.org/cv/KEGG - 18352 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01015 - alcohol sulfotransferase [EC:2.8.2.2] - SULT2B1 - http://www.bacillondex.org/evidenceType/IMPD - 18355 - - - 18358 - http://www.bacillondex.org/cv/KEGG - E2.8.2.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01014 - SULT1A - aryl sulfotransferase [EC:2.8.2.1] - - - estrone sulfotransferase [EC:2.8.2.4] - SULT1E1 - 18361 - http://www.kegg.jp/dbget-bin/www_bget?K01016 - http://www.bacillondex.org/cv/KEGG - STE - http://www.bacillondex.org/evidenceType/IMPD - - - 18364 - http://www.kegg.jp/dbget-bin/www_bget?K05301 - http://www.bacillondex.org/evidenceType/IMPD - sulfite dehydrogenase [EC:1.8.2.1] - http://www.bacillondex.org/cv/KEGG - E1.8.2.1 - - - http://www.bacillondex.org/cv/KEGG - sulfite oxidase [EC:1.8.3.1] - E1.8.3.1 - 18367 - SUOX - http://www.kegg.jp/dbget-bin/www_bget?K00387 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - E2.7.7.5 - 18370 - sulfate adenylyltransferase (ADP) [EC:2.7.7.5] - http://www.kegg.jp/dbget-bin/www_bget?K00959 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01082 - E3.1.3.7 - 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] - 18373 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - chondroitin 4-sulfotransferase 11 [EC:2.8.2.5] - http://www.kegg.jp/dbget-bin/www_bget?K01017+K04742+K07779 - CHST11 - http://www.bacillondex.org/cv/KEGG - 18376 - - - 18379 - http://www.kegg.jp/dbget-bin/www_bget?K01017+K04742+K07779 - http://www.bacillondex.org/cv/KEGG - CHST12 - http://www.bacillondex.org/evidenceType/IMPD - chondroitin 4-sulfotransferase 12 [EC:2.8.2.5] - - - http://www.bacillondex.org/cv/KEGG - chondroitin 4-sulfotransferase 13 [EC:2.8.2.5] - http://www.kegg.jp/dbget-bin/www_bget?K01017+K04742+K07779 - CHST13 - http://www.bacillondex.org/evidenceType/IMPD - 18382 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03379 - 18385 - http://www.bacillondex.org/cv/KEGG - cyclohexanone monooxygenase [EC:1.14.13.22] - E1.14.13.22 - - - http://www.kegg.jp/dbget-bin/www_bget?K06446 - acyl-CoA dehydrogenase [EC:1.3.99.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18388 - DCAA - - - http://www.bacillondex.org/cv/KEGG - QARS - glutaminyl-tRNA synthetase [EC:6.1.1.18] - 18391 - GLNS - http://www.kegg.jp/dbget-bin/www_bget?K01886 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03341 - 18394 - http://www.bacillondex.org/evidenceType/IMPD - O-phosphoseryl-tRNA(Sec) selenium transferase [EC:2.9.1.-] - SEPSECS - - - PSTK - O-phosphoseryl-tRNA(Sec) kinase [EC:2.7.1.-] - 18397 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10837 - - - http://www.bacillondex.org/evidenceType/IMPD - 18400 - SEPCYSS - http://www.bacillondex.org/cv/KEGG - Sep-tRNA:Cys-tRNA synthetase - http://www.kegg.jp/dbget-bin/www_bget?K06868 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18403 - http://www.kegg.jp/dbget-bin/www_bget?K07587 - O-phosphoseryl-tRNA synthetase [EC:6.1.1.-] - SEPRS - - - 18406 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09759 - http://www.bacillondex.org/evidenceType/IMPD - nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] - ASPC - - - 18409 - pyrrolysyl-tRNA synthetase [EC:6.1.1.26] - http://www.bacillondex.org/evidenceType/IMPD - PYLS - http://www.kegg.jp/dbget-bin/www_bget?K11627 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - palmitoyl-CoA hydrolase [EC:3.1.2.2] - http://www.kegg.jp/dbget-bin/www_bget?K01068 - E3.1.2.2 - 18412 - - - http://www.kegg.jp/dbget-bin/www_bget?K10226 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18415 - FADS2 - fatty acid desaturase 2 (delta-6 desaturase) [EC:1.14.19.-] - - - TESB - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10805 - 18418 - http://www.bacillondex.org/cv/KEGG - acyl-CoA thioesterase II [EC:3.1.2.-] - - - acyl-CoA thioesterase YciA [EC:3.1.2.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10806 - 18421 - http://www.bacillondex.org/cv/KEGG - YCIA - - - http://www.bacillondex.org/evidenceType/IMPD - salicylate synthetase [EC:5.4.4.2 4.1.3.-] - MBTI - 18424 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04781+K04782 - IRP9 - YBTS - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K04781+K04782 - isochorismate pyruvate-lyase [EC:4.1.3.-] - PCHB - 18427 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K04120 - http://www.bacillondex.org/cv/KEGG - E5.5.1.13 - http://www.bacillondex.org/evidenceType/IMPD - 18430 - ent-copalyl diphosphate synthase [EC:5.5.1.13] - - - http://www.bacillondex.org/evidenceType/IMPD - 18433 - cyanuric acid amidohydrolase [EC:3.5.2.15] - http://www.kegg.jp/dbget-bin/www_bget?K03383 - E3.5.2.15 - http://www.bacillondex.org/cv/KEGG - - - N-isopropylammelide isopropylaminohydrolase [EC:3.5.99.4] - E3.5.99.4 - ATZC - http://www.kegg.jp/dbget-bin/www_bget?K08710 - http://www.bacillondex.org/evidenceType/IMPD - 18436 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03382 - http://www.bacillondex.org/evidenceType/IMPD - hydroxyatrazine ethylaminohydrolase [EC:3.5.99.3] - 18439 - E3.5.99.3 - - - http://www.bacillondex.org/cv/KEGG - 18442 - ATZA - atrazine chlorohydrolase [EC:3.8.1.8] - http://www.kegg.jp/dbget-bin/www_bget?K05394 - http://www.bacillondex.org/evidenceType/IMPD - E3.8.1.8 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05549+K05550+K05784 - benzoate 1,2-dioxygenase alpha subunit [EC:1.14.12.10] - BENA - http://www.bacillondex.org/cv/KEGG - 18445 - - - 18448 - http://www.kegg.jp/dbget-bin/www_bget?K05549+K05550+K05784 - http://www.bacillondex.org/evidenceType/IMPD - BENB - http://www.bacillondex.org/cv/KEGG - benzoate 1,2-dioxygenase beta subunit [EC:1.14.12.10] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05549+K05550+K05784 - benzoate 1,2-dioxygenase electron transfer component - 18451 - http://www.bacillondex.org/evidenceType/IMPD - BENC - - - E3.2.1.105 - 18454 - strictosidine beta-D-glucosidase [EC:3.2.1.105] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12693 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - strictosidine synthase [EC:4.3.3.2] - http://www.kegg.jp/dbget-bin/www_bget?K01757 - E4.3.3.2 - 18457 - http://www.bacillondex.org/cv/KEGG - - - 18460 - http://www.bacillondex.org/evidenceType/IMPD - arylesterase [EC:3.1.1.2] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01045 - E3.1.1.2 - - - http://www.kegg.jp/dbget-bin/www_bget?K10526 - OPC-8:0 CoA ligase 1 [EC:6.2.1.-] - OPCL1 - http://www.bacillondex.org/evidenceType/IMPD - 18463 - http://www.bacillondex.org/cv/KEGG - - - lipoxygenase [EC:1.13.11.12] - E1.13.11.12 - 18466 - http://www.kegg.jp/dbget-bin/www_bget?K00454 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 18469 - E4.2.1.92 - http://www.kegg.jp/dbget-bin/www_bget?K01723 - http://www.bacillondex.org/cv/KEGG - hydroperoxide dehydratase [EC:4.2.1.92] - - - http://www.kegg.jp/dbget-bin/www_bget?K10525 - AOC - 18472 - allene oxide cyclase [EC:5.3.99.6] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E5.3.99.6 - - - 12-oxophytodienoic acid reductase [EC:1.3.1.42] - 18475 - E1.3.1.42 - http://www.kegg.jp/dbget-bin/www_bget?K05894 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - linoleoyl-CoA desaturase [EC:1.14.19.3] - E1.14.19.3 - 18478 - http://www.kegg.jp/dbget-bin/www_bget?K00508 - http://www.bacillondex.org/evidenceType/IMPD - - - cytochrome P450, family 2, subfamily E [EC:1.14.14.1] - 18481 - CYP2E - http://www.kegg.jp/dbget-bin/www_bget?K07409+K07413+K07415+K07418+K07424 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - CYP3A - http://www.kegg.jp/dbget-bin/www_bget?K07409+K07413+K07415+K07418+K07424 - cytochrome P450, family 3, subfamily A [EC:1.14.14.1] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18484 - - - ABA2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K09841 - E1.1.1.288 - xanthoxin dehydrogenase [EC:1.1.1.288] - 18487 - - - http://www.kegg.jp/dbget-bin/www_bget?K09840 - E1.13.11.51 - 18490 - http://www.bacillondex.org/evidenceType/IMPD - 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - http://www.bacillondex.org/cv/KEGG - NCED - - - CRTR - http://www.kegg.jp/dbget-bin/www_bget?K02294 - 18493 - CRTZ - beta-carotene hydroxylase [EC:1.14.13.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 18496 - CRTY - lycopene beta cyclase [EC:1.14.-.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06443 - http://www.bacillondex.org/cv/KEGG - CRTL1 - LCYB - - - http://www.bacillondex.org/cv/KEGG - lycopene epsilon cyclase [EC:1.14.-.-] - 18499 - CRTL2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K06444 - LCYE - - - carotenoid epsilon-ring hydroxylase - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18502 - http://www.kegg.jp/dbget-bin/www_bget?K09837 - LUT1 - - - http://www.bacillondex.org/evidenceType/IMPD - 18505 - zeta-carotene desaturase [EC:1.14.99.30] - CRTQ - http://www.bacillondex.org/cv/KEGG - E1.14.99.30 - http://www.kegg.jp/dbget-bin/www_bget?K00514+K09835+K10027 - ZDS - - - http://www.kegg.jp/dbget-bin/www_bget?K00514+K09835+K10027 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18508 - carotenoid isomerase [EC:5.-.-.-] - CRTH - CRTISO - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00514+K09835+K10027 - 18511 - phytoene dehydrogenase [EC:1.14.99.-] - http://www.bacillondex.org/evidenceType/IMPD - CRTI - - - IPT - adenylate isopentenyltransferase (cytokinin synthase) - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10760 - 18514 - - - cytokinin trans-hydroxylase - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10717 - 18517 - CYP735A - - - CRTP - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18520 - phytoene dehydrogenase, phytoene desaturase [EC:1.14.99.-] - http://www.kegg.jp/dbget-bin/www_bget?K02293+K10027 - PDS - - - http://www.bacillondex.org/cv/KEGG - TPS-CIN - 18523 - http://www.kegg.jp/dbget-bin/www_bget?K07385 - http://www.bacillondex.org/evidenceType/IMPD - 1,8-cineole synthase [EC:4.2.3.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07384 - 18526 - http://www.bacillondex.org/cv/KEGG - pinene synthase [EC:4.2.3.14] - http://www.bacillondex.org/evidenceType/IMPD - E4.2.3.14 - - - http://www.kegg.jp/dbget-bin/www_bget?K04102 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18529 - 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55] - E4.1.1.55 - - - E4.2.3.19 - http://www.bacillondex.org/evidenceType/IMPD - 18532 - http://www.kegg.jp/dbget-bin/www_bget?K04121 - http://www.bacillondex.org/cv/KEGG - ent-kaurene synthase [EC:4.2.3.19] - - - http://www.bacillondex.org/cv/KEGG - E1.14.12.7 - phthalate 4,5-dioxygenase [EC:1.14.12.7] - http://www.bacillondex.org/evidenceType/IMPD - 18535 - http://www.kegg.jp/dbget-bin/www_bget?K07519 - - - 18538 - http://www.kegg.jp/dbget-bin/www_bget?K09591 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - probable steroid reductase DET2 [EC:1.3.99.-] - DET2 - - - http://www.bacillondex.org/evidenceType/IMPD - abscisic-aldehyde oxidase [EC:1.2.3.14] - AAO3 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09842 - E1.2.3.14 - 18541 - - - DWF4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 90, subfamily B, polypeptide 1 (steroid22-alpha-hydroxylase) [EC:1.14.13.-] - http://www.kegg.jp/dbget-bin/www_bget?K09587 - CYP90B1 - 18544 - - - http://www.kegg.jp/dbget-bin/www_bget?K12637+K12638 - ROT3 - http://www.bacillondex.org/cv/KEGG - CYP90C1 - cytochrome P450, family 90, subfamily C, polypeptide 1 [EC:1.14.-.-] - http://www.bacillondex.org/evidenceType/IMPD - 18547 - - - 18550 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CYP90D1 - cytochrome P450, family 90, subfamily D, polypeptide 1 [EC:1.14.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K12637+K12638 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K10775+K13064 - 18553 - PTAL - http://www.bacillondex.org/cv/KEGG - phenylalanine/tyrosine ammonia-lyase [EC:4.3.1.25] - - - http://www.kegg.jp/dbget-bin/www_bget?K00249+K00253 - IVD - http://www.bacillondex.org/evidenceType/IMPD - 18556 - E1.3.99.10 - isovaleryl-CoA dehydrogenase [EC:1.3.99.10] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10700 - 18559 - EDB - http://www.bacillondex.org/evidenceType/IMPD - E1.17.99.2 - ethylbenzene hydroxylase [EC:1.17.99.2] - - - CYP51 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - cytochrome P450, family 51, subfamily A (sterol 14-demethylase)[EC:1.14.13.70] - 18562 - http://www.kegg.jp/dbget-bin/www_bget?K05917 - - - http://www.bacillondex.org/evidenceType/IMPD - 18565 - lanosterol synthase [EC:5.4.99.7] - E5.4.99.7 - ERG7 - http://www.kegg.jp/dbget-bin/www_bget?K01852 - LSS - http://www.bacillondex.org/cv/KEGG - - - methylsterol monooxygenase [EC:1.14.13.72] - SC4MOL - http://www.kegg.jp/dbget-bin/www_bget?K07750 - ERG25 - http://www.bacillondex.org/evidenceType/IMPD - 18568 - http://www.bacillondex.org/cv/KEGG - E1.14.13.72 - - - ERG24 - http://www.bacillondex.org/cv/KEGG - 18571 - E1.3.1.70 - http://www.kegg.jp/dbget-bin/www_bget?K00222 - http://www.bacillondex.org/evidenceType/IMPD - TM7SF2 - delta14-sterol reductase [EC:1.3.1.70] - - - http://www.kegg.jp/dbget-bin/www_bget?K09827 - http://www.bacillondex.org/cv/KEGG - 18574 - 3-keto steroid reductase [EC:1.1.1.270] - http://www.bacillondex.org/evidenceType/IMPD - E1.1.1.270 - ERG27 - - - http://www.bacillondex.org/evidenceType/IMPD - NSDHL - sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)[EC:1.1.1.170] - http://www.kegg.jp/dbget-bin/www_bget?K07748 - http://www.bacillondex.org/cv/KEGG - 18577 - ERG26 - E1.1.1.170 - - - http://www.kegg.jp/dbget-bin/www_bget?K00801 - http://www.bacillondex.org/evidenceType/IMPD - 18580 - E2.5.1.21 - farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] - http://www.bacillondex.org/cv/KEGG - FDFT1 - - - E1.14.99.7 - http://www.bacillondex.org/cv/KEGG - squalene monooxygenase [EC:1.14.99.7] - http://www.kegg.jp/dbget-bin/www_bget?K00511 - 18583 - http://www.bacillondex.org/evidenceType/IMPD - SQLE - - - http://www.kegg.jp/dbget-bin/www_bget?K00539 - 18586 - E1.97.1.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - TFDB - 18589 - http://www.kegg.jp/dbget-bin/www_bget?K10676 - 2,4-dichlorophenol 6-monooxygenase [EC:1.14.13.20] - E1.14.13.20 - http://www.bacillondex.org/cv/KEGG - - - 18592 - E1.14.13.50 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03391 - pentachlorophenol monooxygenase [EC:1.14.13.50] - http://www.bacillondex.org/cv/KEGG - - - 2-aminoethylphosphonate-pyruvate transaminase - http://www.bacillondex.org/evidenceType/IMPD - AEPZ - http://www.kegg.jp/dbget-bin/www_bget?K03430+K09469 - 18595 - http://www.bacillondex.org/cv/KEGG - - - tryptophan 2,3-dioxygenase [EC:1.13.11.11] - TDO2 - 18598 - http://www.kegg.jp/dbget-bin/www_bget?K00453+K00463 - E1.13.11.11 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 18601 - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 7, subfamily A (cholesterol7alpha-monooxygenase) [EC:1.14.13.17] - http://www.kegg.jp/dbget-bin/www_bget?K00489 - CYP7A1 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00223 - 18604 - delta24(24(1))-sterol reductase [EC:1.3.1.71] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ERG4 - - - E4.1.1.22 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01590+K01593 - HDC - http://www.bacillondex.org/evidenceType/IMPD - histidine decarboxylase [EC:4.1.1.22] - 18607 - - - http://www.kegg.jp/dbget-bin/www_bget?K05826+K05827 - lysine biosynthesis protein LysX - LYSX - 18610 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01580+K01594 - 18613 - sulfinoalanine decarboxylase [EC:4.1.1.29] - http://www.bacillondex.org/cv/KEGG - E4.1.1.29 - CSAD - - - http://www.bacillondex.org/cv/KEGG - 6-pyruvoyltetrahydropterin 2'-reductase [EC:1.1.1.220] - 18616 - E1.1.1.220 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00072+K04071 - - - http://www.bacillondex.org/cv/KEGG - SCP2 - http://www.kegg.jp/dbget-bin/www_bget?K08764 - SCPX - sterol carrier protein 2 [EC:2.3.1.176] - 18619 - http://www.bacillondex.org/evidenceType/IMPD - - - SLC27A5 - http://www.kegg.jp/dbget-bin/www_bget?K08748 - FATP5 - solute carrier family 27 (fatty acid transporter), member 5[EC:6.2.1.7] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18622 - - - http://www.bacillondex.org/evidenceType/IMPD - E2.5.1.26 - http://www.bacillondex.org/cv/KEGG - AGPS - alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] - 18625 - http://www.kegg.jp/dbget-bin/www_bget?K00803 - - - HSD17B4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K12405 - 3-hydroxyacyl-CoA dehydrogenase /3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase [EC:1.1.1.354.2.1.107] - 18628 - - - http://www.bacillondex.org/cv/KEGG - ERG2 - http://www.kegg.jp/dbget-bin/www_bget?K09829 - 18631 - http://www.bacillondex.org/evidenceType/IMPD - C-8 sterol isomerase [EC:5.-.-.-] - - - C-5 sterol desaturase [EC:1.3.3.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09830 - 18634 - ERG3 - - - http://www.bacillondex.org/evidenceType/IMPD - C-22 sterol desaturase [EC:1.14.14.-] - ERG5 - 18637 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09831 - - - 18640 - http://www.kegg.jp/dbget-bin/www_bget?K00747 - N-Acetylgalactosaminyltransferase II [EC:2.4.1.175] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - E2.4.1.175 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00079+K00081 - 18643 - http://www.bacillondex.org/evidenceType/IMPD - prostaglandin-E2 9-reductase [EC:1.1.1.189] - E1.1.1.189 - - - germacradienol/germacrene-D synthase [EC:4.2.3.22] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18646 - E4.2.3.22 - http://www.kegg.jp/dbget-bin/www_bget?K10187 - - - isobutyryl-CoA dehydrogenase [EC:1.3.99.-] - http://www.kegg.jp/dbget-bin/www_bget?K00248+K00249+K09478+K11410+K11538 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ACAD8 - 18649 - - - http://www.kegg.jp/dbget-bin/www_bget?K01472+K01473+K01474 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18652 - abstract ko concept - - - http://www.bacillondex.org/cv/KEGG - 18655 - http://www.kegg.jp/dbget-bin/www_bget?K00677 - http://www.bacillondex.org/evidenceType/IMPD - LPXA - UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] - - - 18658 - http://www.bacillondex.org/cv/KEGG - 4-cresol dehydrogenase (hydroxylating) [EC:1.17.99.1] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05797 - E1.17.99.1 - - - http://www.bacillondex.org/evidenceType/IMPD - cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase [EC:1.3.1.56] - http://www.kegg.jp/dbget-bin/www_bget?K08690 - E1.3.1.56 - 18661 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 18664 - http://www.bacillondex.org/cv/KEGG - dolichol-phosphate mannosyltransferase [EC:2.4.1.83] - DPM1 - http://www.kegg.jp/dbget-bin/www_bget?K00721+K09658+K09659 - - - http://www.kegg.jp/dbget-bin/www_bget?K00721+K09658+K09659 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - DPM2 - 18667 - dolichyl-phosphate mannosyltransferase polypeptide 2, regulatorysubunit - - - dolichyl-phosphate mannosyltransferase polypeptide 3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - DPM3 - http://www.kegg.jp/dbget-bin/www_bget?K00721+K09658+K09659 - 18670 - - - http://www.bacillondex.org/evidenceType/IMPD - UDP-N-acetylglucosamine--dolichyl-phosphateN-acetylglucosaminephosphotransferase [EC:2.7.8.15] - ALG7 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01001 - 18673 - - - alpha-1,3/alpha-1,6-mannosyltransferase [EC:2.4.1.132 2.4.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ALG2 - http://www.kegg.jp/dbget-bin/www_bget?K03843 - 18676 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18679 - http://www.kegg.jp/dbget-bin/www_bget?K03842 - beta-1,4-mannosyltransferase [EC:2.4.1.142] - ALG1 - - - http://www.kegg.jp/dbget-bin/www_bget?K03373+K03374+K03375+K03376 - 18682 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - SIAT7C - N-acetylgalactosaminide alpha-2,6-sialyltransferase(sialyltransferase 7C) [EC:2.4.99.-] - ST6GALNAC III - - - http://www.bacillondex.org/evidenceType/IMPD - 18685 - http://www.kegg.jp/dbget-bin/www_bget?K03373+K03374+K03375+K03376 - ST6GALNAC IV - N-acetylgalactosaminide alpha-2,6-sialyltransferase(sialyltransferase 7D) [EC:2.4.99.7] - http://www.bacillondex.org/cv/KEGG - SIAT7D - - - SIAT7E - http://www.bacillondex.org/evidenceType/IMPD - N-acetylgalactosaminide alpha-2,6-sialyltransferase(sialyltransferase 7E) [EC:2.4.99.-] - 18688 - http://www.kegg.jp/dbget-bin/www_bget?K03373+K03374+K03375+K03376 - ST6GALNAC V - http://www.bacillondex.org/cv/KEGG - - - SIAT7F - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03373+K03374+K03375+K03376 - ST6GALNAC VI - 18691 - N-acetylgalactosaminide alpha-2,6-sialyltransferase(sialyltransferase 7F) [EC:2.4.99.-] - - - http://www.kegg.jp/dbget-bin/www_bget?K07432+K07441 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18694 - beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141] - ALG13 - - - http://www.bacillondex.org/evidenceType/IMPD - 18697 - beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141] - ALG14 - http://www.kegg.jp/dbget-bin/www_bget?K07432+K07441 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - SIAT8E - alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase(sialyltransferase 8E) [EC:2.4.99.-] - 18700 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03369 - - - http://www.bacillondex.org/cv/KEGG - SIAT8A - alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase(sialyltransferase 8A) [EC:2.4.99.8] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03369+K03371 - 18703 - - - 18706 - (N-Acetylneuraminyl)-galactosylglucosylceramideN-acetylgalactosaminyltransferase [EC:2.4.1.92] - GALGT - http://www.kegg.jp/dbget-bin/www_bget?K00725 - B4GALNT1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - B3GALT4 - ganglioside galactosyltransferase [EC:2.4.1.62] - http://www.kegg.jp/dbget-bin/www_bget?K00715 - 18709 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 18712 - SIAT4A - beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4A)[EC:2.4.99.4] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00780+K03368 - - - beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4B)[EC:2.4.99.4] - http://www.kegg.jp/dbget-bin/www_bget?K00780+K03368 - 18715 - SIAT4B - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - FUT2 - http://www.kegg.jp/dbget-bin/www_bget?K00718 - 18718 - FUT1 - galactoside 2-L-fucosyltransferase [EC:2.4.1.69] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - SIAT9 - http://www.bacillondex.org/cv/KEGG - 18721 - lactosylceramide alpha-2,3-sialyltransferase (sialyltransferase 9)[EC:2.4.99.9] - http://www.kegg.jp/dbget-bin/www_bget?K03370 - - - 18724 - GBGT1 - http://www.kegg.jp/dbget-bin/www_bget?K00722 - globoside alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.88] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03877+K07819+K07820 - 18727 - B3GALT5 - beta-1,3-galactosyltransferase 5 [EC:2.4.1.-] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K03877+K07819+K07820 - beta-1,3-galactosyltransferase 1 [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - 18730 - http://www.bacillondex.org/evidenceType/IMPD - B3GALT1 - - - 18733 - beta-1,3-galactosyltransferase 2 [EC:2.4.1.-] - B3GALT2 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03877+K07819+K07820 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K00709 - ABO - histo-blood group ABO system transferase [EC:2.4.1.40 2.4.1.37] - 18736 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - lactosylceramide 4-alpha-galactosyltransferase [EC:2.4.1.228] - http://www.bacillondex.org/cv/KEGG - A4GALT - http://www.bacillondex.org/evidenceType/IMPD - 18739 - http://www.kegg.jp/dbget-bin/www_bget?K01988 - - - B3GALT3 - galactosylgalactosylglucosylceramidebeta-D-acetylgalactosaminyltransferase [EC:2.4.1.79] - 18742 - http://www.bacillondex.org/cv/KEGG - B3GALNT1 - http://www.kegg.jp/dbget-bin/www_bget?K00719 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 18745 - http://www.bacillondex.org/cv/KEGG - 3-oxo-5-beta-steroid 4-dehydrogenase [EC:1.3.1.3] - http://www.kegg.jp/dbget-bin/www_bget?K00251 - AKR1D1 - - - http://www.bacillondex.org/cv/KEGG - 18748 - 3alpha(or 20beta)-hydroxysteroid dehydrogenase [EC:1.1.1.53] - http://www.kegg.jp/dbget-bin/www_bget?K00038 - E1.1.1.53 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - galactoside 3(4)-fucosyltransferase 3 [EC:2.4.1.65] - http://www.bacillondex.org/evidenceType/IMPD - FUT3 - http://www.kegg.jp/dbget-bin/www_bget?K00716+K03663+K07632+K07633+K07634 - 18751 - - - http://www.kegg.jp/dbget-bin/www_bget?K00716+K03663+K07632+K07633+K07634 - 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase[EC:2.4.1.152] - http://www.bacillondex.org/cv/KEGG - FUT9 - http://www.bacillondex.org/evidenceType/IMPD - 18754 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - galactoside alpha-1,3-fucosyltransferase 4 [EC:2.4.1.-] - FUT4 - http://www.kegg.jp/dbget-bin/www_bget?K00716+K03663+K07632+K07633+K07634 - 18757 - - - 18760 - galactoside alpha-1,3-fucosyltransferase 5 [EC:2.4.1.65] - http://www.kegg.jp/dbget-bin/www_bget?K00716+K03663+K07632+K07633+K07634 - FUT5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - galactoside alpha-1,3-fucosyltransferase 6 [EC:2.4.1.65] - http://www.bacillondex.org/evidenceType/IMPD - 18763 - FUT6 - http://www.kegg.jp/dbget-bin/www_bget?K00716+K03663+K07632+K07633+K07634 - - - beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 10)[EC:2.4.99.10] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18766 - SIAT10 - http://www.kegg.jp/dbget-bin/www_bget?K03792 - - - N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase[EC:2.4.1.149] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00741+K07970+K07971 - 18769 - http://www.bacillondex.org/cv/KEGG - B3GNT1 - B3GNT2 - - - 18772 - beta-1,3-N-acetylglucosaminyltransferase 3 [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - B3GNT3 - http://www.kegg.jp/dbget-bin/www_bget?K00741+K07970+K07971 - - - http://www.bacillondex.org/cv/KEGG - beta-1,3-N-acetylglucosaminyltransferase 4 [EC:2.4.1.-] - 18775 - B3GNT4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00741+K07970+K07971 - - - http://www.kegg.jp/dbget-bin/www_bget?K07966+K07967+K07968+K07969 - B4GALT1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18778 - beta-1,4-galactosyltransferase 1 [EC:2.4.1.-] - - - http://www.bacillondex.org/evidenceType/IMPD - B4GALT2 - beta-1,4-galactosyltransferase 2 [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - 18781 - http://www.kegg.jp/dbget-bin/www_bget?K07966+K07967+K07968+K07969 - - - beta-1,4-galactosyltransferase 3 [EC:2.4.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18784 - http://www.kegg.jp/dbget-bin/www_bget?K07966+K07967+K07968+K07969 - B4GALT3 - - - http://www.bacillondex.org/cv/KEGG - 18787 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07966+K07967+K07968+K07969 - B4GALT4 - beta-1,4-galactosyltransferase 4 [EC:2.4.1.-] - - - http://www.bacillondex.org/cv/KEGG - 18790 - N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase[EC:2.4.1.150] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00742 - GCNT2 - - - 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] - http://www.bacillondex.org/evidenceType/IMPD - 18793 - http://www.bacillondex.org/cv/KEGG - UBIA - http://www.kegg.jp/dbget-bin/www_bget?K03179+K06152 - - - UBIG - http://www.bacillondex.org/evidenceType/IMPD - 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.- 2.1.1.64] - 18796 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00568+K00591 - - - http://www.bacillondex.org/cv/KEGG - hexaprenyldihydroxybenzoate methyltransferase [EC:2.1.1.114] - http://www.bacillondex.org/evidenceType/IMPD - 18799 - http://www.kegg.jp/dbget-bin/www_bget?K00568+K00591 - COQ3 - - - UBIF - 18802 - http://www.kegg.jp/dbget-bin/www_bget?K03184+K06134 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase[EC:1.14.13.-] - - - http://www.bacillondex.org/evidenceType/IMPD - 18805 - http://www.kegg.jp/dbget-bin/www_bget?K03184+K06134 - http://www.bacillondex.org/cv/KEGG - ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-] - COQ7 - - - http://www.kegg.jp/dbget-bin/www_bget?K03185+K06126 - UBIH - http://www.bacillondex.org/cv/KEGG - 18808 - http://www.bacillondex.org/evidenceType/IMPD - 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - COQ6 - ubiquinone biosynthesis monooxygenase Coq6 [EC:1.14.13.-] - 18811 - http://www.kegg.jp/dbget-bin/www_bget?K03185+K06126 - - - AARF - http://www.bacillondex.org/evidenceType/IMPD - UBIB - ubiquinone biosynthesis protein - http://www.bacillondex.org/cv/KEGG - 18814 - http://www.kegg.jp/dbget-bin/www_bget?K03688 - - - 18817 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K03182+K06186 - http://www.bacillondex.org/cv/KEGG - UBID - - - small protein A - SMPA - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18820 - http://www.kegg.jp/dbget-bin/www_bget?K03182+K06186 - - - 18823 - http://www.bacillondex.org/cv/KEGG - SIAT6 - http://www.kegg.jp/dbget-bin/www_bget?K00781+K03494 - N-acetyllactosaminide alpha-2,3-sialyltransferase (sialyltransferase6) [EC:2.4.99.6] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00781+K03494 - beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4C)[EC:2.4.99.4] - 18826 - http://www.bacillondex.org/cv/KEGG - SIAT4C - - - 18829 - http://www.kegg.jp/dbget-bin/www_bget?K03766 - B3GNT5 - beta-1,3-N-acetylglucosaminyltransferase 5 [EC:2.4.1.206] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - phosphatidylinositol glycan, class F [EC:2.7.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K05287+K05288 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18832 - PIGF - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05287+K05288 - phosphatidylinositol glycan, class O - PIGO - http://www.bacillondex.org/evidenceType/IMPD - 18835 - - - 18838 - http://www.kegg.jp/dbget-bin/www_bget?K05286 - phosphatidylinositol glycan, class B [EC:2.4.1.-] - http://www.bacillondex.org/evidenceType/IMPD - PIGB - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K07542 - phosphatidylinositol glycan, class V [EC:2.4.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18841 - PIGV - - - http://www.kegg.jp/dbget-bin/www_bget?K05285 - 18844 - PIGN - http://www.bacillondex.org/evidenceType/IMPD - phosphatidylinositol glycan, class N [EC:2.7.-.-] - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K05284+K07541 - phosphatidylinositol glycan, class M [EC:2.4.1.-] - PIGM - 18847 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.kegg.jp/dbget-bin/www_bget?K05284+K07541 - 18850 - PIGX - http://www.bacillondex.org/evidenceType/IMPD - phosphatidylinositol glycan, class X - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - phosphatidylinositol glycan, class W [EC:2.3.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K05283 - http://www.bacillondex.org/cv/KEGG - PIGW - 18853 - - - 18856 - N-acetylglucosaminylphosphatidylinositol deacetylase [EC:3.5.1.89] - http://www.kegg.jp/dbget-bin/www_bget?K03434 - E3.5.1.89 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - phosphatidylinositol glycan, class A [EC:2.4.1.198] - http://www.bacillondex.org/cv/KEGG - GPI3 - PIGA - 18859 - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - http://www.bacillondex.org/evidenceType/IMPD - - - phosphatidylinositol glycan, class H - PIGH - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - 18862 - GPI15 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 18865 - PIGC - GPI2 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - phosphatidylinositol glycan, class C - http://www.bacillondex.org/evidenceType/IMPD - - - phosphatidylinositol glycan, class Q - 18868 - PIGQ - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - GPI1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - PIGP - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - 18871 - http://www.bacillondex.org/evidenceType/IMPD - DSCR5 - GPI19 - phosphatidylinositol glycan, class P - - - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - phosphatidylinositol glycan anchor biosynthesis, class Y - 18874 - PIGY - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - GPI-N-acetylglucosaminyltransferase - ERI1 - 18877 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03857+K03858+K03859+K03860+K03861+K09658+K11001+K11002 - - - alpha-1,3-mannosyl-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.101] - http://www.kegg.jp/dbget-bin/www_bget?K00726 - 18880 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - MGAT1 - - - http://www.bacillondex.org/cv/KEGG - MAN2A - alpha-mannosidase II [EC:3.2.1.114] - http://www.kegg.jp/dbget-bin/www_bget?K01231 - http://www.bacillondex.org/evidenceType/IMPD - E3.2.1.114 - 18883 - - - mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113] - http://www.kegg.jp/dbget-bin/www_bget?K01230 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - MAN1A - 18886 - E3.2.1.113 - - - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - http://www.bacillondex.org/evidenceType/IMPD - OST4 - http://www.bacillondex.org/cv/KEGG - oligosaccharyl transferase complex subunit OST4 - 18889 - - - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - 18892 - dolichyl-diphosphooligosaccharide--protein glycosyltransferase[EC:2.4.1.119] - STT3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18895 - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - OST1 - RPN1 - oligosaccharyltransferase complex subunit alpha (ribophorin I) - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18898 - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - oligosaccharyltransferase complex subunit delta (ribophorin II) - SWP1 - RPN2 - - - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - http://www.bacillondex.org/evidenceType/IMPD - OST2 - 18901 - oligosaccharyltransferase complex subunit epsilon - http://www.bacillondex.org/cv/KEGG - DAD1 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - http://www.bacillondex.org/evidenceType/IMPD - 18904 - oligosaccharyltransferase complex subunit gamma - OST6 - OST3 - - - 18907 - oligosaccharyltransferase complex subunit beta - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - WBP1 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00730+K07151+K12666+K12667+K12668+K12669+K12670+K12691 - oligosaccharyl transferase complex subunit OST5 - OST5 - http://www.bacillondex.org/cv/KEGG - 18910 - - - 18913 - GCS1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - mannosyl-oligosaccharide glucosidase [EC:3.2.1.106] - http://www.kegg.jp/dbget-bin/www_bget?K01228 - - - http://www.kegg.jp/dbget-bin/www_bget?K03849 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - alpha-1,3-glucosyltransferase [EC:2.4.1.-] - 18916 - ALG8 - - - alpha-1,2-glucosyltransferase [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ALG10 - 18919 - http://www.kegg.jp/dbget-bin/www_bget?K03850 - - - alpha-1,2-mannosyltransferase [EC:2.4.1.-] - ALG9 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18922 - http://www.kegg.jp/dbget-bin/www_bget?K03846 - - - http://www.kegg.jp/dbget-bin/www_bget?K03848 - alpha-1,3-glucosyltransferase [EC:2.4.1.-] - ALG6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 18925 - - - http://www.kegg.jp/dbget-bin/www_bget?K00736 - http://www.bacillondex.org/cv/KEGG - 18928 - http://www.bacillondex.org/evidenceType/IMPD - alpha-1,6-mannosyl-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143] - MGAT2 - - - http://www.kegg.jp/dbget-bin/www_bget?K00710+K09667 - polypeptide N-acetylgalactosaminyltransferase [EC:2.4.1.41] - 18931 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - GALNT - - - 18934 - http://www.kegg.jp/dbget-bin/www_bget?K00710+K09667 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - polypeptide N-acetylglucosaminyltransferase [EC:2.4.1.41] - OGT - - - http://www.bacillondex.org/evidenceType/IMPD - 18937 - SIAT7A - http://www.bacillondex.org/cv/KEGG - ST6GALNAC I - alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase(sialyltransferase 7A) [EC:2.4.99.3] - http://www.kegg.jp/dbget-bin/www_bget?K03479 - - - 18940 - http://www.kegg.jp/dbget-bin/www_bget?K00731+K09653 - C1GALT1 - http://www.bacillondex.org/evidenceType/IMPD - glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase[EC:2.4.1.122] - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00731+K09653 - C1GALT1-specific chaperone 1 [EC:2.4.1.-] - C1GALT1C1 - C1GALT2 - 18943 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00727+K09662+K09663 - beta-1,3-galactosyl-O-glycosyl-glycoproteinbeta-1,6-N-acetylglucosaminyltransferase [EC:2.4.1.102] - GCNT1 - http://www.bacillondex.org/cv/KEGG - 18946 - - - 18949 - GCNT3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - N-acetylglucosaminyltransferase 3, mucin type [EC:2.4.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K00727+K09662+K09663 - - - beta-1,6-N-acetylglucosaminyltransferase 4 [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - 18952 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00727+K09662+K09663 - GCNT4 - - - 18955 - acetylgalactosaminyl-0-glycosyl-glycoproteinbeta-1,6-N-acetylglucosaminyltransferase [EC:2.4.1.148] - http://www.bacillondex.org/cv/KEGG - E2.4.1.148 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00740+K09662 - - - OCH1 - http://www.bacillondex.org/evidenceType/IMPD - alpha 1,6-mannosyltransferase [EC:2.4.1.232] - 18958 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05528 - - - 18961 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00737 - http://www.bacillondex.org/cv/KEGG - MGAT3 - beta-1,4-mannosyl-glycoproteinbeta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.144] - - - http://www.bacillondex.org/cv/KEGG - alpha-1,3-mannosylglycoproteinbeta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.145] - http://www.bacillondex.org/evidenceType/IMPD - 18964 - MGAT4 - http://www.kegg.jp/dbget-bin/www_bget?K00738 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00744+K09661 - alpha-1,3(6)-mannosylglycoproteinbeta-1,6-N-acetyl-glucosaminyltransferase [EC:2.4.1.155] - http://www.bacillondex.org/evidenceType/IMPD - 18967 - MGAT5 - - - mannosyl alpha-1,6-glycoproteinbeta-1,6-N-acetyl-glucosaminyltransferase, isozyme B [EC:2.4.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - MGAT5B - 18970 - http://www.kegg.jp/dbget-bin/www_bget?K00744+K09661 - - - http://www.bacillondex.org/evidenceType/IMPD - FUT8 - http://www.bacillondex.org/cv/KEGG - glycoprotein 6-alpha-L-fucosyltransferase [EC:2.4.1.68] - 18973 - http://www.kegg.jp/dbget-bin/www_bget?K00717 - - - 18976 - beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase[EC:2.4.1.38] - E2.4.1.38 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00708 - - - http://www.kegg.jp/dbget-bin/www_bget?K00778 - beta-galactoside alpha-2,6-sialyltransferase (sialyltransferase 1)[EC:2.4.99.1] - 18979 - SIAT1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 18982 - http://www.bacillondex.org/evidenceType/IMPD - alpha-1,4-N-acetylglucosaminyltransferase EXTL1 [EC:2.4.1.224] - EXTL1 - http://www.kegg.jp/dbget-bin/www_bget?K02368+K02370 - http://www.bacillondex.org/cv/KEGG - - - alpha-1,4-N-acetylglucosaminyltransferase EXTL3 [EC:2.4.1.2232.4.1.224] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 18985 - http://www.kegg.jp/dbget-bin/www_bget?K02368+K02370 - EXTL3 - - - http://www.kegg.jp/dbget-bin/www_bget?K02536 - 18988 - LPXD - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase[EC:2.3.1.-] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.-] - http://www.bacillondex.org/evidenceType/IMPD - LPXH - http://www.kegg.jp/dbget-bin/www_bget?K03269 - 18991 - - - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase[EC:3.5.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K02535 - LPXC - http://www.bacillondex.org/cv/KEGG - 18994 - http://www.bacillondex.org/evidenceType/IMPD - - - 18997 - galactosylxylosylprotein 3-beta-galactosyltransferase [EC:2.4.1.134] - http://www.bacillondex.org/cv/KEGG - B3GALT6 - http://www.kegg.jp/dbget-bin/www_bget?K00734 - http://www.bacillondex.org/evidenceType/IMPD - - - xylosylprotein 4-beta-galactosyltransferase [EC:2.4.1.133] - http://www.kegg.jp/dbget-bin/www_bget?K00733 - 19000 - B4GALT7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 19003 - B3GAT1 - http://www.kegg.jp/dbget-bin/www_bget?K00735+K10157+K10158+K10812 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1[EC:2.4.1.135] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - B3GAT2 - 19006 - http://www.kegg.jp/dbget-bin/www_bget?K00735+K10157+K10158+K10812 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2[EC:2.4.1.135] - http://www.bacillondex.org/evidenceType/IMPD - - - B3GAT3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00735+K10157+K10158+K10812 - http://www.bacillondex.org/cv/KEGG - 19009 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3[EC:2.4.1.135] - - - E2.4.1.135 - http://www.kegg.jp/dbget-bin/www_bget?K00735+K10157+K10158+K10812 - http://www.bacillondex.org/cv/KEGG - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase[EC:2.4.1.135] - http://www.bacillondex.org/evidenceType/IMPD - 19012 - - - XYLT - http://www.bacillondex.org/cv/KEGG - protein xylosyltransferase [EC:2.4.2.26] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00771 - 19015 - - - 19018 - acetylgalactosaminyl-0-glycosyl-glycoproteinbeta-1,3-N-acetylglucosaminyltransferase [EC:2.4.1.147] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00739 - http://www.bacillondex.org/evidenceType/IMPD - B3GNT6 - - - E2.4.1.174 - N-acetylgalactosaminyltransferase I [EC:2.4.1.174] - 19021 - http://www.kegg.jp/dbget-bin/www_bget?K00746 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K03419 - 19024 - E2.4.1.226 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase[EC:2.4.1.226] - - - glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.2242.4.1.225] - http://www.kegg.jp/dbget-bin/www_bget?K02366+K02367 - http://www.bacillondex.org/cv/KEGG - 19027 - http://www.bacillondex.org/evidenceType/IMPD - EXT1 - - - 19030 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K02366+K02367 - glucuronyl/N-acetylglucosaminyl transferase EXT2 [EC:2.4.1.2242.4.1.225] - http://www.bacillondex.org/evidenceType/IMPD - EXT2 - - - http://www.kegg.jp/dbget-bin/www_bget?K02527 - http://www.bacillondex.org/evidenceType/IMPD - 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.-.-.-] - 19033 - http://www.bacillondex.org/cv/KEGG - KDTA - - - http://www.bacillondex.org/evidenceType/IMPD - lipid-A-disaccharide synthase [EC:2.4.1.182] - LPXB - http://www.bacillondex.org/cv/KEGG - 19036 - http://www.kegg.jp/dbget-bin/www_bget?K00748 - - - 19039 - GMHA - http://www.kegg.jp/dbget-bin/www_bget?K03271 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - phosphoheptose isomerase [EC:5.-.-.-] - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K03272 - RFAE - HLDE - WAAE - GMHC - http://www.bacillondex.org/evidenceType/IMPD - 19042 - D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphateadenosyltransferase [EC:2.7.1.- 2.7.7.-] - - - LPXK - 19045 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] - http://www.kegg.jp/dbget-bin/www_bget?K00912 - - - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-Pphosphatase) [EC:3.1.3.45] - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - KDSC - 19048 - http://www.kegg.jp/dbget-bin/www_bget?K03270 - - - KDSB - 19051 - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00979 - 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)[EC:2.7.7.38] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K01627 - 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)[EC:2.5.1.55] - KDSA - http://www.bacillondex.org/evidenceType/IMPD - 19054 - - - 19057 - lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K02517 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - HTRB - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - lipid A biosynthesis (KDO)2-(lauroyl)-lipid iva acyltransferase[EC:2.3.1.-] - http://www.kegg.jp/dbget-bin/www_bget?K02560 - MSBB - 19060 - - - ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - RFAD - http://www.kegg.jp/dbget-bin/www_bget?K03274 - 19063 - - - http://www.bacillondex.org/cv/KEGG - 19066 - http://www.kegg.jp/dbget-bin/www_bget?K03273 - GMHB - http://www.bacillondex.org/evidenceType/IMPD - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.-] - - - EBP - E5.3.3.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19069 - cholestenol delta-isomerase [EC:5.3.3.5] - http://www.kegg.jp/dbget-bin/www_bget?K01824 - - - cycloartenol synthase [EC:5.4.99.8] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K01853 - 19072 - http://www.bacillondex.org/cv/KEGG - E5.4.99.8 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19075 - theobromine synthase [EC:2.1.1.159] - http://www.kegg.jp/dbget-bin/www_bget?K12730+K12731 - MXMT - - - http://www.bacillondex.org/cv/KEGG - HSD3B7 - 19078 - http://www.kegg.jp/dbget-bin/www_bget?K12408 - http://www.bacillondex.org/evidenceType/IMPD - cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase [EC:1.1.1.181] - - - http://www.bacillondex.org/evidenceType/IMPD - SMT1 - sterol 24-C-methyltransferase [EC:2.1.1.41] - http://www.kegg.jp/dbget-bin/www_bget?K00559 - http://www.bacillondex.org/cv/KEGG - 19081 - E2.1.1.41 - ERG6 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00488 - cytochrome P450, family 27, subfamily A (cholestanetriol26-monooxygenase) [EC:1.14.13.15] - 19084 - CYP27A - - - http://www.kegg.jp/dbget-bin/www_bget?K05353 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - PMT - putrescine N-methyltransferase [EC:2.1.1.53] - 19087 - - - delta24-sterol reductase [EC:1.3.1.72] - DHCR24 - 19090 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K09828 - - - 19093 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - DHCR7 - 7-dehydrocholesterol reductase [EC:1.3.1.21] - http://www.kegg.jp/dbget-bin/www_bget?K00213 - - - http://www.bacillondex.org/evidenceType/IMPD - E1.14.21.6 - SC5DL - http://www.bacillondex.org/cv/KEGG - 19096 - http://www.kegg.jp/dbget-bin/www_bget?K00227 - lathosterol oxidase [EC:1.14.21.6] - - - 19099 - CYP27B - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K07438 - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 27, subfamily B (25-hydroxyvitamin D31alpha-hydroxylase) [EC:1.14.13.13] - - - phosphoribulokinase [EC:2.7.1.19] - PRKB - http://www.bacillondex.org/cv/KEGG - 19102 - E2.7.1.19 - http://www.kegg.jp/dbget-bin/www_bget?K00855 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - cytochrome P450, family 724, subfamily B, polypeptide 1[EC:1.14.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K12639 - 19105 - CYP724B1 - http://www.bacillondex.org/cv/KEGG - D11 - - - cycloeucalenol cycloisomerase [EC:5.5.1.9] - E5.5.1.9 - 19108 - http://www.kegg.jp/dbget-bin/www_bget?K08246 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - CYP19A - http://www.kegg.jp/dbget-bin/www_bget?K07434 - http://www.bacillondex.org/evidenceType/IMPD - 19111 - http://www.bacillondex.org/cv/KEGG - cytochrome P450, family 19, subfamily A [EC:1.14.14.1] - - - 19114 - http://www.kegg.jp/dbget-bin/www_bget?K01100+K11532 - sedoheptulose-bisphosphatase [EC:3.1.3.37] - E3.1.3.37 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - GLPX-SEBP - http://www.kegg.jp/dbget-bin/www_bget?K01100+K11532 - fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase[EC:3.1.3.11 3.1.3.37] - 19117 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 19120 - http://www.bacillondex.org/evidenceType/IMPD - choloylglycine hydrolase [EC:3.5.1.24] - http://www.kegg.jp/dbget-bin/www_bget?K01442 - http://www.bacillondex.org/cv/KEGG - E3.5.1.24 - - - http://www.kegg.jp/dbget-bin/www_bget?K00498 - cytochrome P450, family 11, subfamily A (cholesterol monooxygenase(side-chain-cleaving)) [EC:1.14.15.6] - CYP11A - 19123 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - alpha-methylacyl-CoA racemase [EC:5.1.99.4] - MCR - E5.1.99.4 - 19126 - http://www.kegg.jp/dbget-bin/www_bget?K01796 - AMACR - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - ACOX2 - 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA24-hydroxylase [EC:1.17.99.3] - 19129 - http://www.kegg.jp/dbget-bin/www_bget?K10214 - http://www.bacillondex.org/cv/KEGG - - - 19132 - cytochrome P450, family 8, subfamily B (sterol 12-alpha-hydroxylase)[EC:1.14.13.95] - http://www.kegg.jp/dbget-bin/www_bget?K07431 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - CYP8B - - - 19135 - http://www.kegg.jp/dbget-bin/www_bget?K00512 - CYP17 - cytochrome P450, family 17, subfamily A (steroid17alpha-monooxygenase) [EC:1.14.99.9] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K07433 - 19138 - cytochrome P450, family 11, subfamily B2 (steroid11beta-monooxygenase / corticosterone 18-monooxygenase)[EC:1.14.15.4 1.14.15.5] - CYP11B2 - http://www.bacillondex.org/evidenceType/IMPD - - - 19141 - CYP21 - cytochrome P450, family 21, subfamily A (steroid 21-monooxygenase)[EC:1.14.99.10] - http://www.kegg.jp/dbget-bin/www_bget?K00513 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - CYP11B1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - cytochrome P450, family 11, subfamily B1 (steroid11beta-monooxygenase) [EC:1.14.15.4] - 19144 - http://www.kegg.jp/dbget-bin/www_bget?K00497 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00515 - BCMO1 - BCDO1 - http://www.bacillondex.org/evidenceType/IMPD - beta-carotene 15,15'-monooxygenase [EC:1.14.99.36] - 19147 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K13077 - 19150 - FNSI - flavone synthase [EC:1.14.11.22] - http://www.bacillondex.org/evidenceType/IMPD - - - 19153 - http://www.kegg.jp/dbget-bin/www_bget?K03845 - alpha-1,3-mannosyltransferase [EC:2.4.1.130] - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - ALG3 - - - 19156 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - ALG12 - http://www.kegg.jp/dbget-bin/www_bget?K03847 - alpha-1,6-mannosyltransferase [EC:2.4.1.130] - - - E1.2.3.8 - http://www.bacillondex.org/cv/KEGG - 19159 - pyridoxal oxidase [EC:1.2.3.8] - http://www.kegg.jp/dbget-bin/www_bget?K00157+K00159 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19162 - http://www.kegg.jp/dbget-bin/www_bget?K12692 - hyoscyamine (6S)-dioxygenase [EC:1.14.11.11] - http://www.bacillondex.org/evidenceType/IMPD - H6H - - - http://www.bacillondex.org/evidenceType/IMPD - COAC - http://www.kegg.jp/dbget-bin/www_bget?K01598 - PPCDC - 19165 - http://www.bacillondex.org/cv/KEGG - phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36] - - - TR2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K05354+K08081 - 19168 - tropinone reductase [EC:1.1.1.236] - - - E1.1.1.206 - http://www.kegg.jp/dbget-bin/www_bget?K05354+K08081 - 19171 - http://www.bacillondex.org/cv/KEGG - tropine dehydrogenase [EC:1.1.1.206] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00307 - E1.21.3.3 - 19174 - reticuline oxidase [EC:1.21.3.3] - http://www.bacillondex.org/evidenceType/IMPD - - - CYP85A1 - 19177 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - cytochrome P450, family 85, subfamily A, polypeptide 1(brassinosteroid-6-oxidase 1) [EC:1.14.-.-] - BR6OX1 - http://www.kegg.jp/dbget-bin/www_bget?K09590+K12640 - - - http://www.bacillondex.org/evidenceType/IMPD - CYP85A2 - 19180 - cytochrome P450, family 85, subfamily A, polypeptide 2(brassinosteroid-6-oxidase 2) [EC:1.14.-.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K09590+K12640 - BR6OX2 - - - 19183 - http://www.kegg.jp/dbget-bin/www_bget?K09589 - CYP90D2 - http://www.bacillondex.org/cv/KEGG - D2 - cytochrome P450, family 90, subfamily D, polypeptide 2 (steroid3-oxidase) [EC:1.14.-.-] - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - CYP90A1 - cytochrome P450, family 90, subfamily A, polypeptide 1 [EC:1.14.-.-] - http://www.kegg.jp/dbget-bin/www_bget?K09588 - http://www.bacillondex.org/evidenceType/IMPD - CPD - 19186 - - - cinnamoyl-CoA reductase [EC:1.2.1.44] - http://www.kegg.jp/dbget-bin/www_bget?K09753 - 19189 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - CCR - - - http://www.bacillondex.org/evidenceType/IMPD - ETBD - 2-hydroxy-6-oxohepta-2,4-dienoate hydroxylase [EC:3.7.1.-] - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K10702 - 19192 - - - http://www.bacillondex.org/cv/KEGG - anthocyanidin 3-O-glucosyltransferase [EC:2.4.1.115] - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K12930 - 19195 - BZ1 - - - http://www.bacillondex.org/cv/KEGG - 19198 - E2.4.1.159 - http://www.bacillondex.org/evidenceType/IMPD - flavonol-3-O-glucoside L-rhamnosyltransferase [EC:2.4.1.159] - http://www.kegg.jp/dbget-bin/www_bget?K00724 - - - E2.4.1.91 - http://www.bacillondex.org/cv/KEGG - flavonol 3-O-glucosyltransferase [EC:2.4.1.91] - http://www.bacillondex.org/evidenceType/IMPD - 19201 - http://www.kegg.jp/dbget-bin/www_bget?K10757 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K05280 - flavonoid 3'-monooxygenase [EC:1.14.13.21] - 19204 - E1.14.13.21 - - - http://www.bacillondex.org/cv/KEGG - http://www.kegg.jp/dbget-bin/www_bget?K00083 - http://www.bacillondex.org/evidenceType/IMPD - cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] - E1.1.1.195 - 19207 - - - http://www.kegg.jp/dbget-bin/www_bget?K01859 - http://www.bacillondex.org/cv/KEGG - 19210 - http://www.bacillondex.org/evidenceType/IMPD - E5.5.1.6 - chalcone isomerase [EC:5.5.1.6] - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00091 - 19213 - dihydroflavonol-4-reductase [EC:1.1.1.219] - http://www.bacillondex.org/cv/KEGG - E1.1.1.219 - - - E1.14.11.9 - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K00475 - naringenin 3-dioxygenase [EC:1.14.11.9] - 19216 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - leucoanthocyanidin dioxygenase [EC:1.14.11.19] - http://www.kegg.jp/dbget-bin/www_bget?K05277 - 19219 - http://www.bacillondex.org/evidenceType/IMPD - E1.14.11.19 - - - E1.14.11.23 - http://www.kegg.jp/dbget-bin/www_bget?K05278 - http://www.bacillondex.org/cv/KEGG - flavonol synthase [EC:1.14.11.23] - http://www.bacillondex.org/evidenceType/IMPD - FLS - 19222 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.kegg.jp/dbget-bin/www_bget?K09755 - F5H - http://www.bacillondex.org/cv/KEGG - ferulate-5-hydroxylase [EC:1.14.-.-] - 19225 - CYP84A - - - caffeoyl-CoA O-methyltransferase [EC:2.1.1.104] - E2.1.1.104 - http://www.kegg.jp/dbget-bin/www_bget?K00588 - 19228 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.kegg.jp/dbget-bin/www_bget?K09754 - 19231 - http://www.bacillondex.org/cv/KEGG - p-coumarate 3-hydroxylase [EC:1.14.13.-] - http://www.bacillondex.org/evidenceType/IMPD - C3H - CYP98A - - - http://www.bacillondex.org/cv/KEGG - 2.7.7.7 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19233 - - - 19235 - 1.1.1.205 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19237 - http://www.bacillondex.org/cv/KEGG - 4.-.-.- - - - parsed ec from gene annotation - 2.6.-.- - http://www.bacillondex.org/evidenceType/IMPD - 19239 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 6.1.1.11 - 19241 - - - http://www.bacillondex.org/cv/KEGG - 2.7.4.9 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19244 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19247 - 6.1.1.10 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 19250 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 2.7.7.23 - - - http://www.bacillondex.org/evidenceType/IMPD - 19251 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 2.3.1.157 - - - parsed ec from gene annotation - 19253 - 2.7.6.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 2.4.2.8 - 19255 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 2.7.1.33 - 19257 - http://www.bacillondex.org/evidenceType/IMPD - - - 19259 - 2.5.1.47 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19261 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.85 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.27 - parsed ec from gene annotation - 19263 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19265 - 4.1.3.38 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 19267 - 2.5.1.15 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 4.1.2.25 - 19269 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 19272 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 6.1.1.6 - http://www.bacillondex.org/cv/KEGG - - - 6.1.1.24 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19276 - - - 19278 - 2.3.1.30 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19280 - parsed ec from gene annotation - 6.1.1.16 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.7.7.6 - http://www.bacillondex.org/cv/KEGG - 19282 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.4.3 - 19285 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19288 - 3.2.1.52 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - 19290 - parsed ec from gene annotation - 2.7.1.69 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.2.-.- - 19292 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19294 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 5.4.2.10 - - - 19298 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.2.6 - parsed ec from gene annotation - - - 1.14.-.- - http://www.bacillondex.org/evidenceType/IMPD - 19300 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 19302 - http://www.bacillondex.org/evidenceType/IMPD - 3.1.4.46 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 19304 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.1.2.2 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19306 - parsed ec from gene annotation - 2.7.8.8 - - - 19308 - parsed ec from gene annotation - 4.1.1.65 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 3.5.99.6 - http://www.bacillondex.org/cv/KEGG - 19311 - - - parsed ec from gene annotation - 19313 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.42 - - - 2.1.1.10 - 19315 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 3.5.1.2 - 19317 - - - 4.2.1.41 - 19319 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.3 - 19321 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19323 - 4.2.1.40 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 4.2.1.42 - http://www.bacillondex.org/evidenceType/IMPD - 19325 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 3.5.1.1 - 19327 - http://www.bacillondex.org/evidenceType/IMPD - - - 19329 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.1.1.3 - parsed ec from gene annotation - - - 19331 - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.47 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - 3.2.1.10 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19333 - - - parsed ec from gene annotation - 19335 - 3.2.1.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19337 - parsed ec from gene annotation - 1.1.1.27 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19339 - 6.3.1.5 - - - http://www.bacillondex.org/cv/KEGG - 19341 - 2.7.1.71 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19343 - 3.1.1.41 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.5.1.12 - parsed ec from gene annotation - 19345 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.8.1.9 - http://www.bacillondex.org/cv/KEGG - 19347 - - - 2.1.1.107 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19349 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.7.1.4 - 19351 - - - http://www.bacillondex.org/cv/KEGG - 1.7.99.4 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19354 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.21 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19357 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.27 - 19359 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19361 - 4.1.2.43 - - - 19363 - 3.1.2.- - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.2.4 - 19365 - - - 19367 - parsed ec from gene annotation - 2.6.1.19 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19369 - 1.2.1.16 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.17 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19373 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19375 - 1.1.1.93 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.2.3.3 - 19377 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 6.3.2.4 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19379 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 19382 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 2.7.8.7 - - - 19384 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.1.1.1 - - - parsed ec from gene annotation - 19386 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.1 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19389 - 2.7.1.4 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 5.3.1.8 - http://www.bacillondex.org/evidenceType/IMPD - 19391 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19393 - 3.2.1.78 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19395 - http://www.bacillondex.org/cv/KEGG - 2.7.4.16 - - - parsed ec from gene annotation - 19397 - 2.1.1.37 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19400 - 1.1.1.14 - http://www.bacillondex.org/evidenceType/IMPD - - - 6.3.5.2 - 19403 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.3.2.2 - http://www.bacillondex.org/evidenceType/IMPD - 19407 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - 19410 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.3.5.3 - - - http://www.bacillondex.org/cv/KEGG - 2.4.2.14 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19414 - - - http://www.bacillondex.org/evidenceType/IMPD - 19416 - http://www.bacillondex.org/cv/KEGG - 6.3.3.1 - parsed ec from gene annotation - - - parsed ec from gene annotation - 19420 - 6.3.4.13 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.2 - parsed ec from gene annotation - 19422 - - - http://www.bacillondex.org/cv/KEGG - 1.4.1.13 - 19424 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.- - parsed ec from gene annotation - 19429 - http://www.bacillondex.org/cv/KEGG - - - 19431 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.23 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 19433 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.6.2.4 - - - http://www.bacillondex.org/cv/KEGG - 19435 - http://www.bacillondex.org/evidenceType/IMPD - 3.8.1.2 - parsed ec from gene annotation - - - 4.2.2.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19437 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.13.39 - parsed ec from gene annotation - 19439 - - - 19441 - 3.6.1.7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19445 - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.93 - - - 19447 - http://www.bacillondex.org/cv/KEGG - 3.1.4.16 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.1.1.31 - 19449 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.8.1.4 - 19455 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.122 - 19457 - - - http://www.bacillondex.org/cv/KEGG - 1.3.1.- - http://www.bacillondex.org/evidenceType/IMPD - 19460 - parsed ec from gene annotation - - - 5.4.3.8 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19462 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19465 - 1.11.1.6 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.30 - 19468 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.5.3 - 19470 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19472 - parsed ec from gene annotation - 5.4.2.2 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19475 - 2.3.3.1 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.6.1.1 - 19477 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19480 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.1.- - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19482 - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.21 - - - http://www.bacillondex.org/cv/KEGG - 4.2.1.17 - 19485 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.6.1.52 - 19487 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 4.1.1.37 - 19489 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 4.99.1.1 - http://www.bacillondex.org/cv/KEGG - 19491 - - - parsed ec from gene annotation - 1.3.3.4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19493 - - - http://www.bacillondex.org/cv/KEGG - 19495 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.180 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 2.7.7.63 - http://www.bacillondex.org/evidenceType/IMPD - 19497 - - - 19499 - parsed ec from gene annotation - 6.2.1.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 5.4.2.1 - 19501 - - - parsed ec from gene annotation - 2.3.1.9 - 19503 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 6.3.5.4 - parsed ec from gene annotation - 19505 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 19507 - 2.5.1.32 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19509 - 2.7.7.4 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 1.8.4.8 - 19511 - - - parsed ec from gene annotation - 1.2.1.38 - http://www.bacillondex.org/evidenceType/IMPD - 19514 - http://www.bacillondex.org/cv/KEGG - - - 2.7.2.8 - 19517 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 19519 - http://www.bacillondex.org/cv/KEGG - 2.6.1.11 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 19521 - 6.3.5.5 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 2.1.3.3 - 19524 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 2.3.1.179 - 19527 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19529 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 6.1.1.2 - - - 19531 - http://www.bacillondex.org/evidenceType/IMPD - 2.7.6.5 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 2.7.1.23 - 19533 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.5.99.2 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19535 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 19537 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 1.4.3.19 - - - parsed ec from gene annotation - 2.7.7.- - 19540 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 19542 - 2.7.1.49 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 19544 - 1.3.1.9 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 2.5.1.48 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19546 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.4.1.8 - 19548 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - 2.5.1.- - parsed ec from gene annotation - 19552 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.2.1.2 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19554 - - - 19557 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 4.2.1.75 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19559 - 5.3.1.12 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.37 - http://www.bacillondex.org/cv/KEGG - 19561 - parsed ec from gene annotation - - - 19563 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.- - http://www.bacillondex.org/cv/KEGG - - - 4.2.1.8 - http://www.bacillondex.org/cv/KEGG - 19565 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 19567 - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.58 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.7 - http://www.bacillondex.org/cv/KEGG - 19569 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 1.5.1.2 - 19571 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19573 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.1.31 - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.1.10 - 19575 - - - parsed ec from gene annotation - 19577 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.2.11 - - - 19579 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.2.1.41 - - - http://www.bacillondex.org/cv/KEGG - 3.5.4.3 - 19581 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 19584 - http://www.bacillondex.org/cv/KEGG - 5.3.1.23 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.7.1.100 - http://www.bacillondex.org/cv/KEGG - 19586 - - - parsed ec from gene annotation - 19588 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.- - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.109 - 19592 - parsed ec from gene annotation - - - 19595 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 4.2.3.12 - - - parsed ec from gene annotation - 19599 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.1.89 - - - parsed ec from gene annotation - 19601 - 3.5.1.47 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 2.7.1.56 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19603 - - - 1.1.1.169 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19606 - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.19 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19613 - - - http://www.bacillondex.org/cv/KEGG - 3.1.3.25 - parsed ec from gene annotation - 19615 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19618 - 6.4.1.1 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.3 - http://www.bacillondex.org/cv/KEGG - 19622 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 6.3.2.9 - 19627 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.158 - parsed ec from gene annotation - 19630 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.16 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19632 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 6.1.1.5 - http://www.bacillondex.org/cv/KEGG - 19634 - - - 3.5.2.3 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19638 - - - 19642 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.3.3.1 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19644 - 4.1.1.23 - http://www.bacillondex.org/cv/KEGG - - - 2.4.2.10 - parsed ec from gene annotation - 19646 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 2.7.1.25 - 19650 - http://www.bacillondex.org/evidenceType/IMPD - - - 4.99.1.4 - 19653 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 2.7.4.8 - 19656 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 19660 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.2.9 - - - parsed ec from gene annotation - 5.1.3.1 - 19662 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19664 - 2.7.6.2 - http://www.bacillondex.org/evidenceType/IMPD - - - 19666 - 4.3.1.17 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 19669 - http://www.bacillondex.org/cv/KEGG - 2.3.1.39 - parsed ec from gene annotation - - - parsed ec from gene annotation - 19671 - 1.1.1.100 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19673 - http://www.bacillondex.org/cv/KEGG - 6.2.1.5 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19676 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.4.22 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19678 - 2.5.1.31 - - - 19680 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.41 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 6.1.1.15 - http://www.bacillondex.org/evidenceType/IMPD - 19683 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.26 - parsed ec from gene annotation - 19686 - - - http://www.bacillondex.org/cv/KEGG - 19688 - 2.7.7.8 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 1.2.1.11 - 19690 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19693 - parsed ec from gene annotation - 4.2.1.52 - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.103 - 19697 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 19699 - 2.3.1.29 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19701 - http://www.bacillondex.org/evidenceType/IMPD - 2.3.3.10 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19707 - http://www.bacillondex.org/evidenceType/IMPD - 6.3.1.2 - - - 19709 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.37 - - - http://www.bacillondex.org/cv/KEGG - 19711 - 5.3.1.5 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19713 - parsed ec from gene annotation - 2.7.1.17 - - - 3.6.1.23 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19716 - - - parsed ec from gene annotation - 2.1.1.45 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19718 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19720 - http://www.bacillondex.org/evidenceType/IMPD - 2.2.1.1 - - - 19722 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.3 - parsed ec from gene annotation - - - 3.2.1.4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19724 - - - 19726 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.9 - - - 6.4.1.3 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19728 - - - parsed ec from gene annotation - 19731 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.4 - - - parsed ec from gene annotation - 19733 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.3.4.14 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19735 - 2.3.2.2 - - - 19737 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.1 - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.95 - 19743 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19747 - 4.1.1.2 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.9.2 - parsed ec from gene annotation - 19750 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 1.2.4.2 - http://www.bacillondex.org/cv/KEGG - 19754 - - - 2.4.2.1 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19756 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19758 - http://www.bacillondex.org/evidenceType/IMPD - 5.4.3.2 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19761 - 3.1.3.8 - - - 19768 - parsed ec from gene annotation - 4.3.1.19 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19770 - parsed ec from gene annotation - 1.5.1.3 - http://www.bacillondex.org/evidenceType/IMPD - - - 4.2.1.9 - http://www.bacillondex.org/cv/KEGG - 19773 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 1.11.1.9 - 19775 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.3.1.46 - http://www.bacillondex.org/cv/KEGG - 19777 - - - 19779 - parsed ec from gene annotation - 2.4.1.157 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 19781 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.1.74 - - - http://www.bacillondex.org/cv/KEGG - 2.4.2.22 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19783 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19786 - 2.7.1.45 - http://www.bacillondex.org/cv/KEGG - - - 19789 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 1.1.1.125 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 6.1.1.22 - 19792 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 19795 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 4.1.1.11 - - - 6.3.2.1 - parsed ec from gene annotation - 19797 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 19801 - 4.2.3.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 19803 - 1.3.1.26 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 19805 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.19 - parsed ec from gene annotation - - - 1.3.1.12 - http://www.bacillondex.org/cv/KEGG - 19807 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 19809 - http://www.bacillondex.org/cv/KEGG - 2.6.1.9 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 19811 - 4.2.1.20 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.24 - http://www.bacillondex.org/cv/KEGG - 19814 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.48 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19816 - - - 2.4.2.18 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19818 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.4.99.5 - parsed ec from gene annotation - 19821 - - - http://www.bacillondex.org/evidenceType/IMPD - 19823 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 4.2.3.4 - - - parsed ec from gene annotation - 4.2.3.5 - http://www.bacillondex.org/evidenceType/IMPD - 19825 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19827 - parsed ec from gene annotation - 2.7.4.6 - - - 2.5.1.30 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19829 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 19833 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 3.5.4.16 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.94 - parsed ec from gene annotation - 19835 - - - parsed ec from gene annotation - 19837 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.3.3.2 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19839 - 2.7.4.14 - - - http://www.bacillondex.org/cv/KEGG - 1.4.1.2 - 19841 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 19844 - parsed ec from gene annotation - 4.2.1.10 - - - 19847 - parsed ec from gene annotation - 3.5.4.25 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.9 - http://www.bacillondex.org/cv/KEGG - 19849 - - - 4.1.1.20 - http://www.bacillondex.org/cv/KEGG - 19852 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19855 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 5.4.2.7 - - - 19858 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 4.3.1.1 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 3.6.1.13 - 19861 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.3.1.18 - 19864 - - - 1.1.1.49 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19867 - - - 19869 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.44 - parsed ec from gene annotation - - - 2.7.2.7 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19876 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 19878 - 1.4.1.9 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19880 - 2.3.1.19 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.79 - parsed ec from gene annotation - 19882 - - - 19885 - 1.3.99.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19887 - 1.1.1.157 - http://www.bacillondex.org/cv/KEGG - - - 19891 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.2.1.7 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19893 - 2.5.1.10 - - - http://www.bacillondex.org/evidenceType/IMPD - 19895 - parsed ec from gene annotation - 1.5.1.5 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19901 - http://www.bacillondex.org/evidenceType/IMPD - 1.4.4.2 - - - 19904 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.1.2.10 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19906 - 2.7.1.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 6.3.3.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19908 - - - 6.1.1.14 - parsed ec from gene annotation - 19912 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 19915 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 3.5.4.5 - http://www.bacillondex.org/evidenceType/IMPD - - - 19917 - 2.7.1.107 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 3.5.4.12 - 19921 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 19923 - http://www.bacillondex.org/cv/KEGG - 2.7.7.18 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 19925 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.1.1.25 - - - 2.3.1.57 - http://www.bacillondex.org/cv/KEGG - 19928 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 5.1.1.3 - 19930 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 19932 - parsed ec from gene annotation - 3.2.1.132 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.2.1.65 - 19935 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.1.48 - http://www.bacillondex.org/evidenceType/IMPD - 19946 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - 6.1.1.7 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 19948 - - - http://www.bacillondex.org/cv/KEGG - 2.8.1.7 - http://www.bacillondex.org/evidenceType/IMPD - 19950 - parsed ec from gene annotation - - - 6.1.1.12 - http://www.bacillondex.org/cv/KEGG - 19952 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 19954 - 6.1.1.21 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.4.2.7 - 19957 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.18 - 19959 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.5.1.72 - 19961 - - - 19964 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 1.4.3.16 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.51 - parsed ec from gene annotation - 19967 - - - 19970 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 6.3.2.17 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 19972 - http://www.bacillondex.org/evidenceType/IMPD - 6.1.1.9 - parsed ec from gene annotation - - - 19975 - http://www.bacillondex.org/cv/KEGG - 4.2.1.24 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 2.5.1.61 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 19978 - - - 19980 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.2.1.70 - parsed ec from gene annotation - - - 1.1.1.85 - http://www.bacillondex.org/cv/KEGG - 19984 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 19986 - 2.3.3.13 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.1.1.86 - 19988 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.2.1.6 - http://www.bacillondex.org/cv/KEGG - 19990 - parsed ec from gene annotation - - - 3.6.1.15 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 19993 - - - 1.3.99.1 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 19996 - - - 20001 - parsed ec from gene annotation - 3.2.1.55 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 6.1.1.20 - http://www.bacillondex.org/cv/KEGG - 20005 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 20008 - http://www.bacillondex.org/cv/KEGG - 1.1.3.15 - parsed ec from gene annotation - - - 5.1.3.4 - 20012 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 20014 - http://www.bacillondex.org/cv/KEGG - 2.7.1.16 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20016 - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.4 - - - http://www.bacillondex.org/evidenceType/IMPD - 20018 - 6.1.1.3 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 20020 - 4.1.1.50 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.12 - 20022 - http://www.bacillondex.org/cv/KEGG - - - 20024 - 2.7.1.24 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 1.1.1.42 - 20028 - - - 20031 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.1.40 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.1.11 - parsed ec from gene annotation - 20033 - - - 20041 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 4.3.2.1 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.4.5 - 20043 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20045 - http://www.bacillondex.org/cv/KEGG - 2.7.2.1 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20048 - 6.2.1.1 - - - http://www.bacillondex.org/cv/KEGG - 20052 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 3.1.3.15 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20054 - parsed ec from gene annotation - 6.1.1.1 - - - 2.5.1.54 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20057 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20059 - 6.3.2.8 - - - 20063 - 3.5.1.18 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 20066 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.8.1.6 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 20068 - 6.3.3.3 - - - 2.3.1.47 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 20070 - - - parsed ec from gene annotation - 6.2.1.14 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20073 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20075 - 3.2.1.22 - - - 20077 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 6.1.1.4 - - - 20080 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.5.1.6 - parsed ec from gene annotation - - - parsed ec from gene annotation - 20082 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.49 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.4.1.21 - 20084 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20086 - 4.2.1.1 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20088 - 4.2.1.113 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20090 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 6.2.1.26 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.36 - 20092 - - - http://www.bacillondex.org/evidenceType/IMPD - 20096 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 5.4.4.2 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20099 - 1.1.1.22 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 20101 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.1 - - - 20103 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.4.1.21 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 2.7.7.27 - 20105 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20108 - 2.4.1.18 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.2.1.8 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20111 - - - 20113 - parsed ec from gene annotation - 3.6.1.27 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 20115 - http://www.bacillondex.org/cv/KEGG - 5.3.1.14 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 3.2.1.20 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20117 - - - 5.3.1.9 - 20119 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 2.4.2.11 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 20122 - - - 20124 - parsed ec from gene annotation - 1.4.1.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20126 - 3.3.2.1 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 3.4.11.1 - 20130 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.7.1.7 - 20133 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20135 - http://www.bacillondex.org/cv/KEGG - 5.1.1.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 2.7.1.39 - http://www.bacillondex.org/cv/KEGG - 20137 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 20139 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.3.1 - parsed ec from gene annotation - - - 20141 - parsed ec from gene annotation - 1.1.1.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 2.8.1.8 - 20143 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20145 - 3.5.2.5 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 20147 - 1.7.3.3 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20149 - 1.17.1.4 - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20154 - http://www.bacillondex.org/cv/KEGG - 3.5.3.9 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20158 - parsed ec from gene annotation - 1.1.1.35 - - - http://www.bacillondex.org/cv/KEGG - 4.2.1.2 - 20160 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 4.2.1.11 - 20165 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.1 - 20168 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 2.7.2.3 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20170 - - - 20174 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.- - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.10 - parsed ec from gene annotation - 20176 - - - parsed ec from gene annotation - 20178 - http://www.bacillondex.org/evidenceType/IMPD - 5.4.2.6 - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.8 - http://www.bacillondex.org/cv/KEGG - 20181 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.215 - 20184 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.1.5 - 20186 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 20190 - 4.1.3.- - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - 2.4.2.- - 20193 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 20195 - 4.2.1.19 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 1.1.1.23 - 20197 - - - 20199 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.4.2.17 - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.25 - 20202 - - - http://www.bacillondex.org/cv/KEGG - 20207 - parsed ec from gene annotation - 5.1.3.14 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.7.39 - 20210 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.15 - 20213 - http://www.bacillondex.org/cv/KEGG - - - 20215 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.5 - - - 20220 - http://www.bacillondex.org/cv/KEGG - 4.2.1.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 20222 - 2.3.1.183 - - - 2.7.8.- - http://www.bacillondex.org/evidenceType/IMPD - 20224 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 20226 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.1.5 - - - 20231 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 2.4.2.9 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.1.2.1 - parsed ec from gene annotation - 20233 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 20235 - parsed ec from gene annotation - 5.3.1.6 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 2.7.1.21 - 20238 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.1.3.11 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20240 - - - http://www.bacillondex.org/cv/KEGG - 2.2.1.2 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20243 - - - 20245 - parsed ec from gene annotation - 4.1.2.13 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 20247 - 6.3.4.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20257 - 6.1.1.19 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.5.3.11 - http://www.bacillondex.org/cv/KEGG - 20259 - parsed ec from gene annotation - - - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.16 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - 20261 - - - 20263 - parsed ec from gene annotation - 5.3.2.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20266 - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.8 - parsed ec from gene annotation - - - 5.1.3.13 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20270 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.133 - parsed ec from gene annotation - 20272 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from gene annotation - 4.2.1.46 - 20274 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.7.24 - 20276 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20279 - 2.7.4.7 - parsed ec from gene annotation - - - parsed ec from gene annotation - 3.2.1.26 - 20281 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 20285 - http://www.bacillondex.org/cv/KEGG - 2.7.1.6 - parsed ec from gene annotation - - - 2.5.1.3 - http://www.bacillondex.org/evidenceType/IMPD - 20287 - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 2.7.1.50 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20289 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.1.1.13 - parsed ec from gene annotation - 20294 - - - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20298 - http://www.bacillondex.org/cv/KEGG - 3.2.1.86 - - - http://www.bacillondex.org/cv/KEGG - 5.1.3.2 - 20302 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - - - 20304 - 1.1.1.30 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - - - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20306 - 2.8.3.5 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.3.1.3 - 20311 - parsed ec from gene annotation - - - 4.2.1.49 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20313 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - 20315 - http://www.bacillondex.org/evidenceType/IMPD - 3.5.2.7 - parsed ec from gene annotation - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20317 - 3.5.3.8 - - - 20319 - http://www.bacillondex.org/evidenceType/IMPD - 2.4.2.2 - parsed ec from gene annotation - http://www.bacillondex.org/cv/KEGG - - - parsed ec from gene annotation - 4.1.2.4 - 20321 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20325 - http://www.bacillondex.org/cv/KEGG - 4.2.1.44 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.1.92 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20328 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20330 - 5.3.1.- - - - parsed ec from gene annotation - 1.2.1.27 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20332 - - - http://www.bacillondex.org/cv/KEGG - 20336 - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.31 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20338 - 2.7.1.12 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 20344 - http://www.bacillondex.org/cv/KEGG - 3.5.3.1 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from gene annotation - 2.6.1.13 - http://www.bacillondex.org/cv/KEGG - 20346 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - 20348 - http://www.bacillondex.org/evidenceType/IMPD - 6.3.4.4 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from gene annotation - http://www.bacillondex.org/evidenceType/IMPD - 20350 - 4.4.1.5 - - - 1.1.99.8 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20371 - http://www.bacillondex.org/cv/KEGG - - - 3.1.3.10 - http://www.bacillondex.org/cv/KEGG - 20373 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 20377 - parsed ec from reaction file - 5.1.3.15 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.59 - parsed ec from reaction file - 20382 - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.13 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20383 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.71 - 20386 - http://www.bacillondex.org/cv/KEGG - - - 4.1.1.1 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20389 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.4.2.4 - http://www.bacillondex.org/cv/KEGG - 20391 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.63 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20393 - - - 20395 - parsed ec from reaction file - 1.2.7.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.2.7.5 - parsed ec from reaction file - 20396 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20398 - 2.3.1.12 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.2.4.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20400 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.5 - http://www.bacillondex.org/cv/KEGG - 20402 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.4 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20403 - - - http://www.bacillondex.org/cv/KEGG - 20410 - 3.1.3.13 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 4.1.1.32 - parsed ec from reaction file - 20412 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20415 - http://www.bacillondex.org/cv/KEGG - 3.1.3.9 - - - 20418 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.1 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 20420 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.1.9 - - - http://www.bacillondex.org/cv/KEGG - 5.1.3.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20422 - - - http://www.bacillondex.org/evidenceType/IMPD - 20425 - 1.2.7.1 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 20431 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.4.2.5 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.2 - parsed ec from reaction file - 20435 - - - 2.7.1.41 - 20437 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.3.6 - 20444 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.61 - 20446 - parsed ec from reaction file - - - 1.3.5.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20450 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 20452 - 2.3.3.3 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.3.8 - parsed ec from reaction file - 20454 - - - 20457 - http://www.bacillondex.org/cv/KEGG - 6.2.1.4 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.2.7.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20462 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.286 - 20464 - - - 1.1.1.41 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20465 - parsed ec from reaction file - - - 4.2.1.4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20467 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.4.23 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20476 - - - 20484 - 1.1.99.10 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20486 - 3.1.1.17 - - - parsed ec from reaction file - 20488 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.39 - - - 20490 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.1.99.3 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20492 - parsed ec from reaction file - 4.1.2.14 - - - http://www.bacillondex.org/cv/KEGG - 4.1.2.- - http://www.bacillondex.org/evidenceType/IMPD - 20493 - parsed ec from reaction file - - - 20501 - parsed ec from reaction file - 4.1.2.9 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 20502 - 4.1.2.22 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20505 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.12 - - - 2.7.1.- - parsed ec from reaction file - 20507 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20509 - http://www.bacillondex.org/cv/KEGG - 1.1.1.43 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.3.1.9 - parsed ec from reaction file - 20516 - - - http://www.bacillondex.org/cv/KEGG - 20518 - 1.1.3.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.3.5 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20519 - - - 20521 - parsed ec from reaction file - 1.1.5.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20525 - parsed ec from reaction file - 2.7.1.13 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.130 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20527 - - - parsed ec from reaction file - 20533 - 1.1.1.127 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.2.2.6 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20535 - - - http://www.bacillondex.org/cv/KEGG - 20538 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.17 - - - 1.1.1.57 - 20540 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 5.1.3.22 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20543 - - - parsed ec from reaction file - 5.-.-.- - 20544 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.45 - 20547 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20549 - parsed ec from reaction file - 4.1.2.28 - - - 2.7.1.43 - 20551 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20553 - http://www.bacillondex.org/cv/KEGG - 4.1.2.19 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20556 - parsed ec from reaction file - 2.7.7.40 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20558 - http://www.bacillondex.org/cv/KEGG - 3.2.1.67 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.15 - http://www.bacillondex.org/cv/KEGG - 20559 - parsed ec from reaction file - - - 1.1.1.21 - 20562 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 3.2.1.31 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20564 - - - 20568 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.13 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20570 - http://www.bacillondex.org/cv/KEGG - 2.7.1.47 - - - http://www.bacillondex.org/evidenceType/IMPD - 20573 - 1.1.1.137 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 1.1.1.175 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20577 - parsed ec from reaction file - - - 1.1.1.121 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20578 - - - 20580 - http://www.bacillondex.org/cv/KEGG - 1.1.1.19 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 20584 - http://www.bacillondex.org/cv/KEGG - 1.1.1.10 - parsed ec from reaction file - - - 4.1.1.34 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 20586 - - - 1.1.1.56 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20588 - - - http://www.bacillondex.org/cv/KEGG - 1.1.2.2 - 20590 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20593 - parsed ec from reaction file - 2.4.1.17 - - - parsed ec from reaction file - 20595 - 4.2.1.82 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.44 - http://www.bacillondex.org/cv/KEGG - 20597 - parsed ec from reaction file - - - 20600 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.1.53 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20602 - parsed ec from reaction file - 2.7.1.5 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20604 - http://www.bacillondex.org/cv/KEGG - 1.1.1.12 - - - parsed ec from reaction file - 3.1.1.68 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20606 - - - http://www.bacillondex.org/cv/KEGG - 20611 - 1.1.1.11 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 20613 - 4.1.1.85 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 4.2.2.9 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20616 - - - 3.1.1.11 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20619 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.15 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20621 - - - 1.1.1.9 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20623 - - - 20626 - parsed ec from reaction file - 5.3.1.15 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.2.1.80 - 20628 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.3.1.7 - 20630 - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.217 - parsed ec from reaction file - 20634 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 20638 - 3.1.1.65 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 20640 - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.67 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 20642 - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.90 - http://www.bacillondex.org/cv/KEGG - - - 20644 - parsed ec from reaction file - 4.1.2.18 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20647 - 2.7.1.51 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20649 - 2.7.7.22 - - - 3.6.1.21 - parsed ec from reaction file - 20651 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.6.1.- - 20652 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 20654 - 1.1.1.132 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 4.2.1.47 - http://www.bacillondex.org/evidenceType/IMPD - 20656 - - - 20658 - parsed ec from reaction file - 2.7.1.28 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20660 - 2.7.7.13 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.1.99.21 - parsed ec from reaction file - 20662 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.- - 20664 - - - 5.3.1.25 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20667 - - - 20668 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.3.1.3 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.7.1.52 - 20671 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20674 - 3.1.3.46 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 20676 - 3.1.3.54 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.2.1.77 - parsed ec from reaction file - 20681 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20683 - 2.7.1.105 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20685 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.33 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.271 - parsed ec from reaction file - 20688 - - - parsed ec from reaction file - 1.1.1.140 - 20690 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20692 - 3.1.3.70 - http://www.bacillondex.org/cv/KEGG - - - 4.1.2.17 - 20694 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20698 - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.22 - parsed ec from reaction file - - - 2.7.1.90 - http://www.bacillondex.org/evidenceType/IMPD - 20700 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.30 - http://www.bacillondex.org/cv/KEGG - 20702 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 5.4.2.8 - 20707 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 20709 - http://www.bacillondex.org/cv/KEGG - 3.1.3.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 20711 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.138 - parsed ec from reaction file - - - parsed ec from reaction file - 3.2.1.137 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20713 - - - 3.2.1.25 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 20716 - - - 4.2.2.11 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20719 - - - 4.2.2.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20720 - parsed ec from reaction file - - - 1.1.1.187 - 20722 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.281 - 20723 - parsed ec from reaction file - - - 20726 - 2.7.1.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20728 - http://www.bacillondex.org/cv/KEGG - 1.1.1.135 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20731 - 1.1.1.173 - - - http://www.bacillondex.org/cv/KEGG - 20733 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.67 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.3 - http://www.bacillondex.org/cv/KEGG - 20737 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 20739 - 4.1.2.40 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20741 - parsed ec from reaction file - 4.1.2.21 - - - http://www.bacillondex.org/cv/KEGG - 20744 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.2.1.108 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 20746 - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.251 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.58 - http://www.bacillondex.org/cv/KEGG - 20750 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20752 - http://www.bacillondex.org/cv/KEGG - 5.3.1.26 - - - 20754 - 2.7.7.10 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20760 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.48 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20763 - http://www.bacillondex.org/cv/KEGG - 2.7.7.12 - - - 2.4.1.123 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20767 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.4.1.22 - 20772 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20774 - 2.4.1.82 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.16 - 20776 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20778 - 2.7.1.101 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20781 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.120 - - - 20784 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.1.3.9 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.1.144 - 20789 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20791 - 3.2.1.48 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.2.1.6 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20796 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.67 - http://www.bacillondex.org/cv/KEGG - 20798 - - - 3.1.1.25 - 20800 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20806 - 3.2.1.85 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.2.20 - http://www.bacillondex.org/cv/KEGG - 20808 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.3.2.3 - 20810 - - - 1.1.1.129 - 20812 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 20814 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.- - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20817 - 5.1.3.18 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.8.5.1 - 20819 - parsed ec from reaction file - - - parsed ec from reaction file - 1.13.11.13 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20821 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 20823 - 1.1.3.8 - - - 20825 - http://www.bacillondex.org/cv/KEGG - 1.3.3.12 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 20827 - 1.11.1.11 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 20830 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.1.19 - - - http://www.bacillondex.org/evidenceType/IMPD - 20832 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.10.3.3 - - - 3.1.1.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20835 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.6.5.4 - parsed ec from reaction file - 20837 - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.46 - http://www.bacillondex.org/evidenceType/IMPD - 20839 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.13.99.1 - 20841 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 20844 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.25 - parsed ec from reaction file - - - parsed ec from reaction file - 3.7.1.- - 20846 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.2.1.26 - parsed ec from reaction file - 20848 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20853 - parsed ec from reaction file - 5.1.3.- - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.7.-.- - 20859 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 20861 - 3.1.1.15 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.122 - parsed ec from reaction file - 20863 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20868 - 1.1.1.20 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20872 - 4.2.1.43 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 6.4.1.2 - 20876 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 20878 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.86 - - - 20879 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.85 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.58 - 20882 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.1.60 - 20883 - http://www.bacillondex.org/cv/KEGG - - - 4.2.1.61 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 20884 - http://www.bacillondex.org/cv/KEGG - - - 20886 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.1.2.14 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 20889 - parsed ec from reaction file - 1.3.1.10 - http://www.bacillondex.org/evidenceType/IMPD - - - 20891 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.41 - parsed ec from reaction file - - - parsed ec from reaction file - 20898 - 3.1.2.21 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 20907 - 2.3.1.38 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20912 - parsed ec from reaction file - 1.14.19.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 20933 - parsed ec from reaction file - 2.3.1.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.2.1.59 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20939 - parsed ec from reaction file - - - 20943 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.16 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.211 - 20945 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 20948 - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.74 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.3.1.38 - 20950 - http://www.bacillondex.org/evidenceType/IMPD - - - 1.3.1.8 - parsed ec from reaction file - 20951 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 20959 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.155 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20965 - 3.1.2.2 - http://www.bacillondex.org/cv/KEGG - - - 3.1.2.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 20966 - parsed ec from reaction file - - - 2.3.1.21 - 20976 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 1.2.99.6 - http://www.bacillondex.org/evidenceType/IMPD - 20980 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 20981 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.2.99.3 - parsed ec from reaction file - - - 1.2.99.7 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20982 - parsed ec from reaction file - - - 1.14.14.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20984 - parsed ec from reaction file - - - 1.3.99.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20987 - parsed ec from reaction file - - - 1.3.3.6 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 20988 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 20989 - http://www.bacillondex.org/cv/KEGG - 1.3.99.13 - - - http://www.bacillondex.org/evidenceType/IMPD - 20991 - http://www.bacillondex.org/cv/KEGG - 1.3.99.2 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.18.1.4 - parsed ec from reaction file - 20993 - - - http://www.bacillondex.org/cv/KEGG - 1.18.1.1 - 20994 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.14.15.3 - http://www.bacillondex.org/evidenceType/IMPD - 20998 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.99.20 - 21000 - - - 21006 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.3.3.8 - http://www.bacillondex.org/cv/KEGG - - - 21012 - http://www.bacillondex.org/cv/KEGG - 1.2.1.48 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 6.2.1.6 - 21014 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21016 - 6.2.1.20 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 21018 - 1.1.1.192 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.164 - parsed ec from reaction file - 21019 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21021 - 5.1.2.3 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.3.99.7 - http://www.bacillondex.org/evidenceType/IMPD - 21024 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.4 - http://www.bacillondex.org/cv/KEGG - 21030 - - - 21033 - 2.1.1.95 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 2.1.1.64 - http://www.bacillondex.org/evidenceType/IMPD - 21035 - - - parsed ec from reaction file - 2.5.1.39 - http://www.bacillondex.org/cv/KEGG - 21038 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.3.40 - 21040 - - - 21045 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.5 - http://www.bacillondex.org/cv/KEGG - - - 2.6.1.57 - 21046 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21052 - 1.1.1.222 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.237 - 21053 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.14.13.- - 21056 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21058 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.2.1.9 - - - http://www.bacillondex.org/cv/KEGG - 21060 - 4.2.99.20 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 2.1.1.114 - http://www.bacillondex.org/evidenceType/IMPD - 21062 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21066 - http://www.bacillondex.org/cv/KEGG - 4.1.99.- - - - 6.2.1.12 - 21068 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.21.-.- - http://www.bacillondex.org/cv/KEGG - 21080 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21085 - 3.2.2.26 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.13.11.27 - http://www.bacillondex.org/cv/KEGG - 21089 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21107 - 3.1.2.23 - parsed ec from reaction file - - - 21113 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.3.5 - parsed ec from reaction file - - - 3.2.2.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21116 - - - http://www.bacillondex.org/cv/KEGG - 21117 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.2.2.1 - - - 2.7.1.76 - http://www.bacillondex.org/cv/KEGG - 21119 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 21123 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.2.15 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21125 - 3.6.1.19 - - - 2.4.2.4 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21129 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.5.4.8 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21131 - - - 2.7.1.113 - parsed ec from reaction file - 21134 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.3.6 - 21136 - http://www.bacillondex.org/cv/KEGG - - - 21138 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.2.- - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 3.1.7.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21142 - - - 21144 - 2.1.2.4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21146 - http://www.bacillondex.org/cv/KEGG - 2.7.4.12 - - - 21149 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.17.3.2 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21151 - 3.6.5.1 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.5.3 - 21152 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 3.6.5.2 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21153 - - - 21154 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.5 - - - http://www.bacillondex.org/cv/KEGG - 3.6.5.5 - 21155 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.6.5.4 - 21156 - - - 3.6.5.6 - parsed ec from reaction file - 21157 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21160 - http://www.bacillondex.org/cv/KEGG - 3.5.3.- - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21163 - http://www.bacillondex.org/cv/KEGG - 2.7.7.19 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21164 - 2.7.7.48 - - - 4.6.1.1 - 21166 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 4.6.1.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21167 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.1.99.3 - 21170 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.2.2 - http://www.bacillondex.org/cv/KEGG - 21173 - - - 21176 - parsed ec from reaction file - 1.17.4.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.2.2.2 - parsed ec from reaction file - 21178 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 21182 - parsed ec from reaction file - 3.6.1.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21183 - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.42 - - - parsed ec from reaction file - 21187 - http://www.bacillondex.org/cv/KEGG - 3.2.2.7 - http://www.bacillondex.org/evidenceType/IMPD - - - 5.4.99.18 - 21189 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 6.3.4.18 - 21191 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.5.3.19 - 21194 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.4.1 - 21205 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.4.35 - 21207 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 3.1.4.17 - http://www.bacillondex.org/cv/KEGG - 21208 - parsed ec from reaction file - - - parsed ec from reaction file - 3.6.1.3 - 21210 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.6.3.12 - 21211 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.6.3.11 - 21212 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.10 - 21213 - - - http://www.bacillondex.org/cv/KEGG - 3.6.1.8 - parsed ec from reaction file - 21214 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.6.3.7 - 21215 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.6 - parsed ec from reaction file - 21216 - - - 21217 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.9 - parsed ec from reaction file - - - 3.6.3.8 - http://www.bacillondex.org/evidenceType/IMPD - 21218 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.15 - 21219 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21220 - http://www.bacillondex.org/cv/KEGG - 3.6.3.16 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.50 - 21221 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 21222 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.6.3.1 - - - 21223 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.51 - parsed ec from reaction file - - - 3.6.3.14 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21224 - - - http://www.bacillondex.org/cv/KEGG - 3.6.3.52 - parsed ec from reaction file - 21225 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.6.3.3 - http://www.bacillondex.org/evidenceType/IMPD - 21226 - parsed ec from reaction file - - - 3.6.3.19 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21227 - parsed ec from reaction file - - - 21228 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.6.3.53 - - - 3.6.3.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21229 - parsed ec from reaction file - - - parsed ec from reaction file - 3.6.3.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21230 - - - parsed ec from reaction file - 3.6.3.17 - http://www.bacillondex.org/evidenceType/IMPD - 21231 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21232 - 3.6.3.4 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.18 - 21233 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 21234 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.21 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21235 - 3.6.3.20 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21236 - parsed ec from reaction file - 3.6.3.23 - - - 3.6.3.22 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21237 - - - http://www.bacillondex.org/cv/KEGG - 21238 - 3.6.3.24 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21239 - 3.6.3.25 - parsed ec from reaction file - - - 21240 - http://www.bacillondex.org/cv/KEGG - 3.6.3.26 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 3.6.3.27 - http://www.bacillondex.org/evidenceType/IMPD - 21241 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 3.6.3.28 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21242 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.29 - 21243 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 21244 - http://www.bacillondex.org/cv/KEGG - 3.6.3.34 - parsed ec from reaction file - - - 3.6.3.33 - 21245 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 3.6.3.32 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21246 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21247 - 3.6.4.10 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21248 - 3.6.3.31 - - - http://www.bacillondex.org/cv/KEGG - 21249 - 3.6.4.11 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21250 - 3.6.3.30 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21251 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.6.4.6 - - - http://www.bacillondex.org/evidenceType/IMPD - 21252 - http://www.bacillondex.org/cv/KEGG - 3.6.4.5 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.4.8 - 21253 - parsed ec from reaction file - - - 21254 - http://www.bacillondex.org/cv/KEGG - 3.6.4.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 21255 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.4.9 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.6.3.39 - http://www.bacillondex.org/cv/KEGG - 21256 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21257 - 3.6.3.37 - - - 21258 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.6.4.2 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.38 - parsed ec from reaction file - 21259 - - - 3.6.4.1 - http://www.bacillondex.org/cv/KEGG - 21260 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 21261 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.35 - parsed ec from reaction file - - - 21262 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.4.4 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21263 - parsed ec from reaction file - 3.6.3.36 - - - 3.6.4.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21264 - - - 21265 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.3.43 - parsed ec from reaction file - - - 21266 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.42 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.6.3.44 - 21267 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21268 - http://www.bacillondex.org/cv/KEGG - 3.6.3.41 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21269 - 3.6.3.40 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21270 - 3.6.3.46 - parsed ec from reaction file - - - 3.6.3.47 - 21271 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.6.3.48 - 21272 - - - http://www.bacillondex.org/cv/KEGG - 21273 - http://www.bacillondex.org/evidenceType/IMPD - 3.6.3.49 - parsed ec from reaction file - - - 21276 - 3.6.1.17 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.14 - 21278 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21281 - http://www.bacillondex.org/cv/KEGG - 2.7.7.53 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.41 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21283 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21285 - 3.2.2.12 - - - http://www.bacillondex.org/cv/KEGG - 21287 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.2.3 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.5.4.10 - http://www.bacillondex.org/evidenceType/IMPD - 21288 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21290 - parsed ec from reaction file - 3.6.1.40 - - - 3.6.1.11 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21291 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.1.5.1 - http://www.bacillondex.org/cv/KEGG - 21294 - - - parsed ec from reaction file - 3.5.4.4 - 21300 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 21306 - 2.7.1.73 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.6.1.20 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21313 - - - 4.3.2.3 - 21320 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21322 - parsed ec from reaction file - 3.2.2.4 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.4.17 - 21324 - - - parsed ec from reaction file - 21325 - 3.5.4.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.6.1.29 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21327 - - - parsed ec from reaction file - 2.7.1.74 - 21331 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.7.1.20 - 21332 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21334 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.3.4.7 - - - http://www.bacillondex.org/cv/KEGG - 21336 - parsed ec from reaction file - 2.4.2.16 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21338 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.4.- - - - 21343 - parsed ec from reaction file - 3.6.1.9 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21344 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.6.2.2 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21346 - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.21 - - - 3.1.4.53 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21350 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.2.6 - parsed ec from reaction file - 21369 - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.154 - 21371 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.3.5 - 21374 - parsed ec from reaction file - - - 21377 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.17.4.1 - - - 3.5.2.17 - 21386 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.4.11 - 21390 - parsed ec from reaction file - - - 3.5.3.4 - 21392 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21395 - parsed ec from reaction file - 1.13.12.- - - - http://www.bacillondex.org/cv/KEGG - 1.17.5.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21405 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21411 - http://www.bacillondex.org/cv/KEGG - 2.1.1.160 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21412 - 2.1.1.159 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.2.2.25 - http://www.bacillondex.org/evidenceType/IMPD - 21415 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21417 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.158 - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.95 - 21430 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 21433 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.2.1 - - - 3.1.3.35 - parsed ec from reaction file - 21436 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21441 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.14 - - - parsed ec from reaction file - 21446 - 1.3.5.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 21451 - 3.6.1.39 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21455 - parsed ec from reaction file - 3.6.1.12 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 2.7.4.4 - 21461 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21466 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.1.2.8 - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.6 - 21468 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 21470 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.52 - - - parsed ec from reaction file - 21474 - 2.7.4.10 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 2.4.2.3 - 21476 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21483 - http://www.bacillondex.org/cv/KEGG - 2.4.2.23 - - - 3.5.4.14 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21485 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21494 - 3.5.2.2 - - - 21503 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.2.2.10 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21506 - http://www.bacillondex.org/cv/KEGG - 2.7.1.83 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.1.45 - 21522 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.1.3.2 - 21526 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 21528 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.70 - http://www.bacillondex.org/cv/KEGG - - - 21530 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.2 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.13 - parsed ec from reaction file - 21534 - - - 3.2.2.3 - parsed ec from reaction file - 21541 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.1.1.148 - 21543 - http://www.bacillondex.org/cv/KEGG - - - 21545 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.5.4.30 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.17.99.4 - parsed ec from reaction file - 21550 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21553 - 1.3.1.1 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21555 - 1.3.1.2 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 21557 - 3.5.4.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.4.2.6 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21570 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.5.1.3 - 21576 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 21578 - 2.6.1.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21580 - 2.6.1.12 - - - parsed ec from reaction file - 1.4.1.14 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21582 - - - parsed ec from reaction file - 6.3.1.1 - http://www.bacillondex.org/cv/KEGG - 21585 - http://www.bacillondex.org/evidenceType/IMPD - - - 3.5.1.7 - 21587 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.5.1.38 - 21589 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.3.1.17 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21591 - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.24 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21593 - http://www.bacillondex.org/cv/KEGG - - - 2.6.1.15 - 21596 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21599 - 1.4.3.2 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.3.1 - http://www.bacillondex.org/cv/KEGG - 21601 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.4.3.15 - 21602 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.15 - http://www.bacillondex.org/cv/KEGG - 21604 - parsed ec from reaction file - - - 1.4.1.3 - http://www.bacillondex.org/cv/KEGG - 21606 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21610 - 1.4.1.4 - - - parsed ec from reaction file - 21613 - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.12 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21617 - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.16 - parsed ec from reaction file - - - 5.1.1.13 - 21619 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 6.3.4.16 - 21622 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.6.1.14 - parsed ec from reaction file - 21626 - - - 21628 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.1.15 - - - 21630 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.44 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.2.5 - 21634 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21638 - 3.1.3.3 - http://www.bacillondex.org/cv/KEGG - - - 3.5.3.3 - http://www.bacillondex.org/evidenceType/IMPD - 21640 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21643 - 2.6.1.51 - parsed ec from reaction file - - - 1.1.99.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21646 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.37 - 21648 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.1.3.17 - http://www.bacillondex.org/cv/KEGG - 21650 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21653 - parsed ec from reaction file - 2.1.1.5 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.76 - parsed ec from reaction file - 21655 - - - 1.1.1.79 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21659 - - - 1.1.1.81 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21660 - parsed ec from reaction file - - - 21662 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.2 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21664 - 2.6.1.45 - - - 1.14.15.7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21666 - - - 5.1.1.10 - http://www.bacillondex.org/cv/KEGG - 21668 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 5.1.1.18 - http://www.bacillondex.org/evidenceType/IMPD - 21669 - - - 4.2.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21671 - - - 21678 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.29 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21679 - http://www.bacillondex.org/cv/KEGG - 1.1.1.26 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21681 - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.178 - - - 21683 - http://www.bacillondex.org/cv/KEGG - 1.14.11.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21685 - http://www.bacillondex.org/cv/KEGG - 1.4.2.1 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21687 - 4.2.1.108 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 21689 - http://www.bacillondex.org/evidenceType/IMPD - 2.7.3.5 - http://www.bacillondex.org/cv/KEGG - - - 1.4.3.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21691 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.5.3.1 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21693 - - - 1.5.99.1 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21695 - - - 1.5.99.2 - 21698 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 4.4.1.1 - 21702 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.1.3.38 - 21705 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 21710 - 2.6.1.4 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.4.3.4 - 21717 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.4.3.21 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21718 - - - parsed ec from reaction file - 1.1.1.75 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21723 - - - 2.1.4.1 - 21725 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 2.1.1.156 - parsed ec from reaction file - 21727 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21728 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.162 - - - 21729 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.20 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.31 - http://www.bacillondex.org/cv/KEGG - 21733 - - - http://www.bacillondex.org/cv/KEGG - 21739 - 2.5.1.65 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 4.4.1.24 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21742 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.4.1.25 - http://www.bacillondex.org/cv/KEGG - 21744 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21746 - http://www.bacillondex.org/cv/KEGG - 2.1.1.14 - - - 2.5.1.22 - 21750 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21753 - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.49 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21755 - parsed ec from reaction file - 1.8.4.3 - - - http://www.bacillondex.org/evidenceType/IMPD - 21757 - http://www.bacillondex.org/cv/KEGG - 4.4.1.15 - parsed ec from reaction file - - - 3.3.1.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21759 - parsed ec from reaction file - - - 1.8.1.6 - 21767 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.8.4.1 - http://www.bacillondex.org/evidenceType/IMPD - 21769 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.13.11.20 - http://www.bacillondex.org/cv/KEGG - 21771 - - - 21773 - 1.8.4.4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21775 - 3.2.2.9 - parsed ec from reaction file - - - 21778 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.8.4.13 - - - 1.8.4.14 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21779 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21781 - 2.6.1.3 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21786 - 1.4.1.- - parsed ec from reaction file - - - 1.8.1.10 - 21788 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 3.1.3.77 - 21793 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.4.1.10 - http://www.bacillondex.org/cv/KEGG - 21795 - - - http://www.bacillondex.org/cv/KEGG - 21800 - 1.14.17.4 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21805 - 2.1.1.13 - - - 21808 - 3.5.1.31 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 21810 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.4.1.11 - - - http://www.bacillondex.org/cv/KEGG - 21813 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.4.13.12 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.272 - parsed ec from reaction file - 21817 - http://www.bacillondex.org/cv/KEGG - - - 21820 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.13.11.53 - http://www.bacillondex.org/cv/KEGG - - - 2.8.1.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21822 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 21824 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.54 - - - parsed ec from reaction file - 21828 - http://www.bacillondex.org/cv/KEGG - 4.4.1.14 - http://www.bacillondex.org/evidenceType/IMPD - - - 3.2.2.16 - parsed ec from reaction file - 21832 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.4.2.28 - parsed ec from reaction file - 21834 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 21838 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.1.18 - - - 21841 - 1.2.7.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 21845 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.3.99.12 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.3.99.10 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21847 - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.168 - 21849 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 1.1.1.178 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21852 - - - 21856 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.2.3.1 - - - http://www.bacillondex.org/cv/KEGG - 5.4.99.2 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21858 - - - 2.6.1.6 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21860 - http://www.bacillondex.org/cv/KEGG - - - 5.1.99.1 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 21863 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.6.1.18 - http://www.bacillondex.org/cv/KEGG - 21866 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.67 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 21868 - - - parsed ec from reaction file - 5.4.3.7 - 21870 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21872 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.22 - - - http://www.bacillondex.org/cv/KEGG - 21875 - 1.2.4.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21877 - http://www.bacillondex.org/evidenceType/IMPD - 6.4.1.4 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 3.1.2.4 - 21889 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 21894 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.4.1.5 - - - http://www.bacillondex.org/cv/KEGG - 6.2.1.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21896 - - - 1.2.1.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21898 - - - 21903 - 5.2.1.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.1.1.183 - http://www.bacillondex.org/cv/KEGG - 21905 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.8.3.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21907 - - - 21909 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.1.57 - - - http://www.bacillondex.org/cv/KEGG - 4.1.3.26 - 21917 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 21919 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.182 - - - http://www.bacillondex.org/evidenceType/IMPD - 21925 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 4.2.1.35 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.6.1.66 - 21928 - - - 5.4.99.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21930 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.1.33 - http://www.bacillondex.org/cv/KEGG - 21937 - - - 1.4.1.16 - parsed ec from reaction file - 21947 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.117 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 21955 - - - parsed ec from reaction file - 2.6.1.83 - 21959 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.5.1.7 - http://www.bacillondex.org/evidenceType/IMPD - 21961 - http://www.bacillondex.org/cv/KEGG - - - 6.3.2.13 - 21963 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.5.1.8 - parsed ec from reaction file - 21968 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21971 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.2.- - - - http://www.bacillondex.org/evidenceType/IMPD - 21974 - 1.1.1.87 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21976 - 2.6.1.17 - http://www.bacillondex.org/evidenceType/IMPD - - - 21978 - 1.5.1.10 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 21980 - parsed ec from reaction file - 2.6.1.36 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21982 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.31 - - - 4.2.1.36 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 21984 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 21986 - http://www.bacillondex.org/cv/KEGG - 2.6.1.39 - - - 21990 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.3.2.10 - - - 2.3.3.14 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 21992 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 21996 - 1.5.1.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.5.1.21 - http://www.bacillondex.org/cv/KEGG - 21997 - - - 21999 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.59 - http://www.bacillondex.org/cv/KEGG - - - 1.13.12.2 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22001 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 22003 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.60 - - - 22004 - http://www.bacillondex.org/cv/KEGG - 2.1.1.59 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 2.1.1.43 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22005 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.20 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22008 - - - parsed ec from reaction file - 1.14.11.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22010 - - - 3.5.1.17 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22012 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 1.4.3.14 - 22014 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 1.5.1.16 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22016 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22018 - 1.2.1.47 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.50 - 22023 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 22025 - http://www.bacillondex.org/cv/KEGG - 1.5.1.9 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.4.- - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22027 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22029 - 2.3.1.102 - - - http://www.bacillondex.org/cv/KEGG - 22031 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.3.2.27 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.4.-.- - http://www.bacillondex.org/cv/KEGG - 22033 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 1.14.11.4 - http://www.bacillondex.org/cv/KEGG - 22035 - parsed ec from reaction file - - - parsed ec from reaction file - 1.5.99.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22037 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22039 - 1.5.3.7 - parsed ec from reaction file - - - 22042 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.1.81 - - - 22044 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.4.3.3 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.32 - http://www.bacillondex.org/cv/KEGG - 22048 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.4.1.11 - 22051 - parsed ec from reaction file - - - 22054 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.6.1.65 - - - 22057 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.1.12 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.1.1.9 - http://www.bacillondex.org/cv/KEGG - 22059 - - - 22060 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.1.1.5 - parsed ec from reaction file - - - 3.5.1.63 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22064 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22066 - parsed ec from reaction file - 3.5.1.30 - - - 22068 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.18 - - - 22070 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.6.1.48 - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22072 - 1.14.11.8 - - - 22074 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 5.4.3.4 - - - parsed ec from reaction file - 1.14.11.26 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22077 - - - http://www.bacillondex.org/cv/KEGG - 22079 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.175 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22081 - parsed ec from reaction file - 2.6.1.74 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22084 - http://www.bacillondex.org/cv/KEGG - 3.5.1.93 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22088 - http://www.bacillondex.org/cv/KEGG - 1.21.3.1 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.3.2.26 - parsed ec from reaction file - 22090 - - - 5.1.1.17 - http://www.bacillondex.org/cv/KEGG - 22092 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22094 - 3.5.1.11 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.3.7 - http://www.bacillondex.org/cv/KEGG - 22096 - - - 22101 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.164 - http://www.bacillondex.org/cv/KEGG - - - 22104 - parsed ec from reaction file - 1.14.20.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 22113 - parsed ec from reaction file - 1.2.1.19 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.94 - parsed ec from reaction file - 22116 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22118 - http://www.bacillondex.org/cv/KEGG - 1.5.99.8 - - - parsed ec from reaction file - 22121 - 3.5.4.22 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 22124 - 2.3.1.35 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 22126 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.109 - - - http://www.bacillondex.org/cv/KEGG - 2.6.1.23 - 22128 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 22132 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.4.21 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.21.4.1 - 22134 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.5.3.6 - 22137 - - - http://www.bacillondex.org/cv/KEGG - 1.4.3.- - 22139 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22141 - 2.7.3.2 - http://www.bacillondex.org/evidenceType/IMPD - - - 22143 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 6.3.1.11 - - - http://www.bacillondex.org/evidenceType/IMPD - 22146 - http://www.bacillondex.org/cv/KEGG - 3.5.2.10 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.4.3.10 - 22149 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.4.3.22 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22150 - - - 3.5.1.53 - http://www.bacillondex.org/cv/KEGG - 22152 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.6.1.29 - 22155 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.6.1.82 - http://www.bacillondex.org/cv/KEGG - 22156 - - - 22158 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.1.62 - parsed ec from reaction file - - - 22160 - 3.5.3.7 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.4.13.3 - 22162 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 22164 - http://www.bacillondex.org/cv/KEGG - 6.3.2.11 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 2.3.1.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22166 - parsed ec from reaction file - - - parsed ec from reaction file - 22168 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.3.1 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22170 - http://www.bacillondex.org/cv/KEGG - 3.5.1.54 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22172 - parsed ec from reaction file - 4.1.1.3 - - - 22173 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.16 - parsed ec from reaction file - - - parsed ec from reaction file - 22179 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.5.99.6 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.17 - http://www.bacillondex.org/cv/KEGG - 22182 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 22184 - http://www.bacillondex.org/cv/KEGG - 4.3.1.12 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.14 - parsed ec from reaction file - 22188 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.4.11.5 - 22190 - - - 22192 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.5.-.- - parsed ec from reaction file - - - parsed ec from reaction file - 1.1.1.104 - 22194 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 5.1.1.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22197 - parsed ec from reaction file - - - 6.3.4.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22199 - - - 22206 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.1.1.4 - - - 1.14.11.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22208 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22214 - 4.1.1.75 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 22216 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.2.1.54 - - - 1.5.1.19 - parsed ec from reaction file - 22218 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.6.1.81 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22220 - - - http://www.bacillondex.org/cv/KEGG - 1.5.1.11 - 22222 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 3.5.1.59 - 22224 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22227 - 1.13.12.1 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.6.1.84 - http://www.bacillondex.org/evidenceType/IMPD - 22231 - http://www.bacillondex.org/cv/KEGG - - - 2.7.3.3 - 22233 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.5.3.12 - parsed ec from reaction file - 22235 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.5.2.14 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22237 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.96 - 22239 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 3.5.3.23 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22241 - - - 22243 - parsed ec from reaction file - 3.5.1.4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.71 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22250 - - - http://www.bacillondex.org/cv/KEGG - 3.5.3.13 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22259 - - - 2.1.2.5 - parsed ec from reaction file - 22262 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 22264 - http://www.bacillondex.org/evidenceType/IMPD - 3.4.13.20 - http://www.bacillondex.org/cv/KEGG - - - 22268 - http://www.bacillondex.org/cv/KEGG - 4.1.1.28 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.22 - http://www.bacillondex.org/evidenceType/IMPD - 22269 - - - http://www.bacillondex.org/evidenceType/IMPD - 22275 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.1.1.44 - - - 3.4.13.5 - http://www.bacillondex.org/evidenceType/IMPD - 22278 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 22280 - parsed ec from reaction file - 2.1.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.6.1.38 - 22282 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22286 - 6.3.4.8 - parsed ec from reaction file - - - parsed ec from reaction file - 1.14.13.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22288 - - - 2.1.1.8 - http://www.bacillondex.org/cv/KEGG - 22293 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 22296 - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.87 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.6.1.31 - 22298 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 22300 - http://www.bacillondex.org/cv/KEGG - 3.5.4.19 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.3.5 - parsed ec from reaction file - 22302 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22310 - 5.3.1.16 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.5.1.68 - 22315 - - - http://www.bacillondex.org/cv/KEGG - 22317 - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.8 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.3.2.1 - parsed ec from reaction file - 22320 - - - parsed ec from reaction file - 22322 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.80 - - - 4.1.1.25 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22324 - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.53 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22326 - - - http://www.bacillondex.org/cv/KEGG - 22327 - 1.2.1.29 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.13.3 - 22329 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.11.1.8 - parsed ec from reaction file - 22331 - - - parsed ec from reaction file - 22336 - http://www.bacillondex.org/evidenceType/IMPD - 3.7.1.2 - http://www.bacillondex.org/cv/KEGG - - - 5.2.1.4 - parsed ec from reaction file - 22338 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22339 - 5.2.1.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 5.3.3.12 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22341 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22344 - 1.14.18.1 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22346 - 1.10.3.1 - http://www.bacillondex.org/cv/KEGG - - - 1.14.18.- - http://www.bacillondex.org/evidenceType/IMPD - 22348 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 22353 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.4.3.6 - - - 2.1.1.6 - parsed ec from reaction file - 22356 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22359 - 4.3.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 1.14.17.1 - parsed ec from reaction file - 22362 - http://www.bacillondex.org/cv/KEGG - - - 22364 - parsed ec from reaction file - 4.1.1.62 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.6.1.49 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22369 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.30 - http://www.bacillondex.org/cv/KEGG - 22371 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.29 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22373 - - - parsed ec from reaction file - 22376 - 5.3.3.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22383 - 4.1.99.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.13.11.4 - parsed ec from reaction file - 22386 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 4.1.1.68 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22390 - http://www.bacillondex.org/cv/KEGG - - - 22392 - 1.13.11.15 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 22396 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.99.4 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22398 - http://www.bacillondex.org/cv/KEGG - 2.3.1.14 - - - 22401 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.90 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.27 - 22406 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22408 - parsed ec from reaction file - 2.3.1.140 - - - 22411 - http://www.bacillondex.org/cv/KEGG - 1.2.1.45 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22412 - 1.2.1.60 - - - http://www.bacillondex.org/cv/KEGG - 22414 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.7.1.5 - - - 22419 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.13.18 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 22421 - 1.13.11.5 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 5.3.3.10 - 22433 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 22437 - http://www.bacillondex.org/cv/KEGG - 1.14.16.2 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22441 - 2.1.1.28 - parsed ec from reaction file - - - 1.2.3.13 - 22451 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22457 - http://www.bacillondex.org/cv/KEGG - 1.2.1.58 - - - http://www.bacillondex.org/cv/KEGG - 22459 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.71 - - - 2.3.1.53 - 22461 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 22465 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.13.12.9 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.31 - 22467 - http://www.bacillondex.org/cv/KEGG - - - 1.14.13.14 - 22470 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.14.13.11 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22472 - parsed ec from reaction file - - - 22475 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.1.3.39 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22478 - http://www.bacillondex.org/cv/KEGG - 4.2.1.80 - - - 22481 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.2.1.30 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22483 - http://www.bacillondex.org/cv/KEGG - 1.2.1.39 - - - 3.5.1.32 - parsed ec from reaction file - 22488 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 5.1.1.11 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22490 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.1.20 - 22493 - - - parsed ec from reaction file - 1.13.11.16 - http://www.bacillondex.org/evidenceType/IMPD - 22498 - http://www.bacillondex.org/cv/KEGG - - - 1.14.12.19 - parsed ec from reaction file - 22502 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 22511 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.1.2.25 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.53 - 22514 - http://www.bacillondex.org/cv/KEGG - - - 22516 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.11.1.7 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.4 - 22518 - - - 4.3.1.25 - 22520 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 22521 - 4.3.1.24 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 4.1.1.43 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22523 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22526 - 1.17.5.1 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.11 - http://www.bacillondex.org/cv/KEGG - 22528 - parsed ec from reaction file - - - parsed ec from reaction file - 22530 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.99.1 - - - 2.3.1.36 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22538 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22540 - http://www.bacillondex.org/cv/KEGG - 1.14.16.1 - - - 3.1.1.45 - 22542 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.13.11.1 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22545 - - - 4.5.1.- - 22549 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22551 - http://www.bacillondex.org/cv/KEGG - 3.1.8.1 - - - 22554 - http://www.bacillondex.org/evidenceType/IMPD - 3.8.1.5 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 1.13.11.- - http://www.bacillondex.org/cv/KEGG - 22556 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.13.11.39 - 22558 - parsed ec from reaction file - - - 22560 - http://www.bacillondex.org/cv/KEGG - 5.5.1.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.6.5.6 - 22562 - - - 22565 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.19 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22567 - 1.14.13.7 - parsed ec from reaction file - - - 22569 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.13.29 - - - 22571 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.41 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22572 - parsed ec from reaction file - 3.1.3.2 - - - parsed ec from reaction file - 1.3.1.32 - 22575 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 22581 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.97.1.- - parsed ec from reaction file - - - 22585 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.8.1.3 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.6.5.7 - 22587 - - - 1.14.12.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22589 - http://www.bacillondex.org/cv/KEGG - - - 22596 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.-.- - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22599 - 1.1.-.- - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.61 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22601 - - - 22606 - parsed ec from reaction file - 1.13.11.8 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22608 - 1.14.12.14 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.5.1.1 - 22610 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22613 - 1.14.99.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 4.1.3.17 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22615 - http://www.bacillondex.org/cv/KEGG - - - 22617 - 1.14.13.24 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22619 - 1.2.1.32 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 22623 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.14.13.23 - - - parsed ec from reaction file - 1.13.11.37 - 22626 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.1.99.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22628 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.44 - http://www.bacillondex.org/evidenceType/IMPD - 22630 - - - 3.7.1.9 - 22632 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22634 - 1.14.13.64 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 22636 - http://www.bacillondex.org/cv/KEGG - 4.1.1.77 - http://www.bacillondex.org/evidenceType/IMPD - - - 22638 - 5.1.2.2 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 22640 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.33 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.2 - http://www.bacillondex.org/cv/KEGG - 22641 - - - 22643 - 1.14.13.12 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 22645 - 1.2.1.7 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22647 - 1.13.11.2 - - - 22649 - http://www.bacillondex.org/cv/KEGG - 1.2.1.28 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 22650 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.64 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 22655 - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.3 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.7 - 22658 - - - 1.3.1.25 - 22663 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22669 - http://www.bacillondex.org/cv/KEGG - 4.2.1.83 - - - parsed ec from reaction file - 22671 - http://www.bacillondex.org/evidenceType/IMPD - 1.14.12.10 - http://www.bacillondex.org/cv/KEGG - - - 2.8.3.6 - 22674 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.1.1.24 - http://www.bacillondex.org/evidenceType/IMPD - 22676 - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.46 - parsed ec from reaction file - 22680 - http://www.bacillondex.org/evidenceType/IMPD - - - 22682 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.3.3.4 - http://www.bacillondex.org/cv/KEGG - - - 1.14.99.23 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22684 - - - http://www.bacillondex.org/cv/KEGG - 1.14.12.1 - http://www.bacillondex.org/evidenceType/IMPD - 22689 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 22691 - 4.1.1.63 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22695 - 5.5.1.5 - - - 22697 - 3.1.1.57 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22699 - 2.3.1.174 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.13.11.14 - parsed ec from reaction file - 22701 - - - 1.14.13.35 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22703 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.5.1.2 - 22705 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 22708 - 2.6.1.27 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22710 - 2.3.1.87 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 22712 - 1.1.1.110 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.49 - 22715 - - - 1.13.99.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22718 - - - 1.7.3.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22720 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 22723 - 2.6.1.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 4.4.1.- - parsed ec from reaction file - 22726 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.7.1.3 - 22728 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.7.3.2 - http://www.bacillondex.org/cv/KEGG - 22730 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22732 - 1.10.3.4 - http://www.bacillondex.org/cv/KEGG - - - 22734 - http://www.bacillondex.org/cv/KEGG - 1.13.11.52 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 22737 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.13.12.3 - - - 1.13.11.11 - parsed ec from reaction file - 22739 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.99.2 - 22742 - http://www.bacillondex.org/cv/KEGG - - - 22744 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.3.7 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.191 - parsed ec from reaction file - 22746 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22751 - 3.5.1.9 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22753 - 1.14.16.- - http://www.bacillondex.org/cv/KEGG - - - 1.13.11.17 - parsed ec from reaction file - 22756 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.5.1.- - 22758 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 22761 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.195 - - - 2.8.2.- - parsed ec from reaction file - 22763 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22766 - 1.1.1.190 - http://www.bacillondex.org/cv/KEGG - - - 22771 - 2.1.1.47 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.74 - 22773 - - - 22775 - 1.13.11.23 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 6.3.2.- - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22779 - - - 2.1.1.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22781 - - - parsed ec from reaction file - 22788 - 4.1.1.45 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 22790 - 3.5.99.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 22792 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.2.1.147 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 4.99.1.6 - 22794 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.6 - http://www.bacillondex.org/cv/KEGG - 22803 - parsed ec from reaction file - - - 22806 - 4.2.1.84 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 22808 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.16.3 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22812 - http://www.bacillondex.org/cv/KEGG - 1.14.16.4 - - - http://www.bacillondex.org/cv/KEGG - 4.1.99.1 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22819 - - - 22823 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.10 - parsed ec from reaction file - - - 22827 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.5.1 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.3.1.18 - parsed ec from reaction file - 22830 - - - http://www.bacillondex.org/cv/KEGG - 1.14.13.9 - http://www.bacillondex.org/evidenceType/IMPD - 22832 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.99.25 - 22837 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22839 - 1.1.1.282 - - - 22840 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.24 - - - 2.6.1.78 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22842 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.3.1.79 - http://www.bacillondex.org/evidenceType/IMPD - 22846 - parsed ec from reaction file - - - 1.3.1.78 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22847 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22849 - 1.3.1.43 - http://www.bacillondex.org/cv/KEGG - - - 22860 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.91 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.3.1.13 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22870 - - - 22872 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.2.8 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.6.1.55 - 22908 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.5.1.21 - 22911 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 4.2.1.27 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 22914 - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.9 - 22916 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 3.4.13.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22919 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.3.1.6 - 22925 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22929 - 1.1.1.59 - parsed ec from reaction file - - - parsed ec from reaction file - 22931 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.15 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 22933 - 2.8.3.3 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22935 - parsed ec from reaction file - 1.2.1.18 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22941 - 2.7.2.15 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22943 - parsed ec from reaction file - 2.7.3.4 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 22947 - 1.2.1.73 - parsed ec from reaction file - - - 22949 - 4.1.1.29 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22951 - 1.8.1.3 - - - http://www.bacillondex.org/cv/KEGG - 22953 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.3.15 - - - 22955 - 2.3.1.65 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.2.- - http://www.bacillondex.org/cv/KEGG - 22957 - - - 2.6.1.77 - 22959 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.13.11.19 - parsed ec from reaction file - 22962 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22964 - 1.14.11.17 - parsed ec from reaction file - - - 1.1.2.- - http://www.bacillondex.org/cv/KEGG - 22966 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 4.1.1.82 - 22972 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 2.7.8.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 22977 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.7.15 - http://www.bacillondex.org/cv/KEGG - 22982 - - - http://www.bacillondex.org/cv/KEGG - 22987 - 5.4.2.9 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 2.7.7.14 - http://www.bacillondex.org/evidenceType/IMPD - 22990 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 22993 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.99.1.- - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 22996 - http://www.bacillondex.org/cv/KEGG - 3.11.1.2 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.8.23 - 23008 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.8.1 - 23015 - - - parsed ec from reaction file - 23017 - http://www.bacillondex.org/evidenceType/IMPD - 3.11.1.1 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23019 - 2.6.1.37 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23024 - 4.4.1.16 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.8.99.1 - 23027 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.8.1.- - 23029 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23033 - 2.7.9.3 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23036 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.8.99.2 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.12 - 23042 - http://www.bacillondex.org/cv/KEGG - - - 23045 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.1.1.9 - - - 2.9.1.1 - 23048 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23052 - 1.8.7.1 - http://www.bacillondex.org/evidenceType/IMPD - - - 4.1.2.11 - parsed ec from reaction file - 23054 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 23056 - parsed ec from reaction file - 1.14.13.41 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23058 - http://www.bacillondex.org/cv/KEGG - 3.5.5.7 - - - http://www.bacillondex.org/evidenceType/IMPD - 23059 - 3.5.5.5 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - 3.5.5.2 - 23060 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23062 - 4.1.2.10 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 23065 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.85 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.65 - 23068 - http://www.bacillondex.org/cv/KEGG - - - 23073 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.5.5.4 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.4.99.5 - parsed ec from reaction file - 23075 - http://www.bacillondex.org/evidenceType/IMPD - - - 1.14.13.68 - parsed ec from reaction file - 23080 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23083 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.4.1.63 - - - http://www.bacillondex.org/cv/KEGG - 23087 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.99.1.7 - - - 4.99.1.5 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23089 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.178 - 23092 - http://www.bacillondex.org/cv/KEGG - - - 4.4.1.9 - http://www.bacillondex.org/cv/KEGG - 23097 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 4.1.2.37 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23100 - parsed ec from reaction file - - - 3.2.1.118 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23104 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.117 - parsed ec from reaction file - 23107 - - - 23110 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.66 - - - 23113 - 4.2.1.48 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23116 - http://www.bacillondex.org/cv/KEGG - 1.4.3.7 - - - 23118 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.1.35 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23122 - parsed ec from reaction file - 2.3.2.1 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23127 - http://www.bacillondex.org/cv/KEGG - 3.5.3.10 - - - http://www.bacillondex.org/cv/KEGG - 5.1.1.12 - http://www.bacillondex.org/evidenceType/IMPD - 23132 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.4.3.5 - 23134 - - - parsed ec from reaction file - 23137 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.2.16 - - - 1.5.4.1 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23143 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.8.4.2 - 23146 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.11.1.12 - parsed ec from reaction file - 23148 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23151 - 1.11.1.- - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.11.1.15 - http://www.bacillondex.org/cv/KEGG - 23152 - - - 23157 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.2.3 - - - http://www.bacillondex.org/cv/KEGG - 23161 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.8.1.3 - - - parsed ec from reaction file - 1.8.1.12 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23163 - - - http://www.bacillondex.org/evidenceType/IMPD - 6.3.1.9 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23165 - - - parsed ec from reaction file - 3.5.2.9 - 23167 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 6.3.2.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23170 - http://www.bacillondex.org/cv/KEGG - - - 23173 - 3.4.11.2 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.4.11.23 - 23174 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23176 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.8.1.7 - - - parsed ec from reaction file - 23178 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.8.4.7 - - - parsed ec from reaction file - 23180 - http://www.bacillondex.org/evidenceType/IMPD - 2.3.2.4 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.80 - parsed ec from reaction file - 23184 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23189 - 1.8.3.3 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 2.5.1.18 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23195 - - - http://www.bacillondex.org/cv/KEGG - 1.8.1.13 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23198 - - - 6.3.1.8 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23204 - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.78 - http://www.bacillondex.org/evidenceType/IMPD - 23206 - parsed ec from reaction file - - - 23210 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.25 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.2.1.74 - http://www.bacillondex.org/cv/KEGG - 23212 - - - 2.4.1.43 - 23214 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.2.1.58 - 23217 - - - 23221 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.4 - parsed ec from reaction file - - - 3.2.1.39 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23223 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.7.7.33 - http://www.bacillondex.org/evidenceType/IMPD - 23227 - parsed ec from reaction file - - - 23229 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.2 - - - http://www.bacillondex.org/cv/KEGG - 23231 - 2.7.7.34 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23233 - 2.4.1.35 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.20 - http://www.bacillondex.org/cv/KEGG - 23236 - - - 23242 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.54 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.64 - parsed ec from reaction file - 23244 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.7 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23248 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.34 - 23250 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23254 - parsed ec from reaction file - 3.2.1.33 - - - http://www.bacillondex.org/cv/KEGG - 23257 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.13 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23259 - 2.4.1.11 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23261 - http://www.bacillondex.org/cv/KEGG - 1.1.99.13 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23263 - 3.1.3.24 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23265 - parsed ec from reaction file - 2.4.2.24 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.15 - 23268 - - - parsed ec from reaction file - 2.4.1.125 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23271 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23272 - 2.4.1.5 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.10 - http://www.bacillondex.org/cv/KEGG - 23274 - - - parsed ec from reaction file - 4.1.1.35 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23276 - - - http://www.bacillondex.org/cv/KEGG - 5.1.3.6 - 23278 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 5.4.99.16 - 23281 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 2.7.1.106 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23284 - - - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.28 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23286 - - - http://www.bacillondex.org/cv/KEGG - 23291 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.12 - - - 3.2.1.91 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23295 - - - 23300 - 2.4.1.14 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23303 - parsed ec from reaction file - 2.4.1.29 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23305 - 3.1.3.12 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.2.1.3 - 23307 - - - 5.1.3.9 - 23312 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23314 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.13.1.1 - - - http://www.bacillondex.org/cv/KEGG - 3.2.1.165 - parsed ec from reaction file - 23316 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.7.11 - parsed ec from reaction file - 23318 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 5.1.3.5 - parsed ec from reaction file - 23320 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23322 - 2.7.1.44 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23326 - 5.1.3.8 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.7.64 - 23328 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23330 - 3.2.1.14 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23332 - http://www.bacillondex.org/cv/KEGG - 2.3.1.3 - - - 2.5.1.7 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23336 - - - http://www.bacillondex.org/cv/KEGG - 1.-.-.- - http://www.bacillondex.org/evidenceType/IMPD - 23338 - parsed ec from reaction file - - - parsed ec from reaction file - 23342 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.1.3.10 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.60 - 23349 - - - http://www.bacillondex.org/cv/KEGG - 23351 - 2.1.2.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23354 - 1.17.1.1 - parsed ec from reaction file - - - 23357 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.18.2 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23359 - parsed ec from reaction file - 2.7.7.43 - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.67 - 23362 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 23374 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.4 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.6.2.2 - parsed ec from reaction file - 23376 - - - http://www.bacillondex.org/evidenceType/IMPD - 23380 - http://www.bacillondex.org/cv/KEGG - 4.2.1.76 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.1.3.12 - 23384 - - - http://www.bacillondex.org/cv/KEGG - 3.1.3.29 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23386 - - - 23388 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.1.46 - - - 23390 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.4.2.3 - parsed ec from reaction file - - - parsed ec from reaction file - 2.5.1.56 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23392 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.45 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23395 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23398 - 3.5.1.41 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23400 - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.16 - - - parsed ec from reaction file - 5.1.3.7 - 23405 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23408 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.1.3.3 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.59 - 23411 - - - parsed ec from reaction file - 23413 - 3.5.1.33 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.1.1.136 - 23417 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23419 - 2.7.1.8 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 23421 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.57 - - - 3.1.3.40 - 23424 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23426 - 2.6.1.50 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 2.1.4.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23428 - - - 2.6.1.56 - 23432 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.7.1.72 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23436 - - - parsed ec from reaction file - 23442 - 2.4.2.27 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 5.5.1.4 - parsed ec from reaction file - 23444 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.1.3.39 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23448 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23452 - 2.7.1.65 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 23456 - 6.3.2.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.7.8.13 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23458 - - - parsed ec from reaction file - 23460 - 2.4.1.227 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23463 - 6.3.5.- - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23465 - http://www.bacillondex.org/cv/KEGG - 2.3.2.- - - - 23467 - http://www.bacillondex.org/cv/KEGG - 2.7.1.66 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.3.2.10 - 23471 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.129 - http://www.bacillondex.org/cv/KEGG - 23475 - - - 1.1.1.156 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23479 - parsed ec from reaction file - - - 2.4.1.46 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23481 - - - 23484 - http://www.bacillondex.org/cv/KEGG - 2.7.1.94 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23486 - 2.4.1.241 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 23488 - http://www.bacillondex.org/cv/KEGG - 2.3.1.51 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 3.1.3.4 - 23492 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 23494 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.28 - - - 1.1.1.202 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23496 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.72 - 23498 - parsed ec from reaction file - - - 2.3.1.15 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23501 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.4.99.5 - parsed ec from reaction file - 23503 - - - http://www.bacillondex.org/cv/KEGG - 4.2.1.30 - 23505 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 2.3.1.141 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23508 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23510 - 2.3.1.134 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.3.1.20 - 23515 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 3.1.1.23 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23517 - - - 23519 - parsed ec from reaction file - 3.1.1.34 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23521 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.1.26 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.184 - http://www.bacillondex.org/cv/KEGG - 23523 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.3.1.22 - 23528 - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.158 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23530 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.8.20 - 23534 - http://www.bacillondex.org/cv/KEGG - - - 23536 - 2.7.1.29 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 3.1.3.21 - parsed ec from reaction file - 23538 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.1.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23540 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 23542 - 2.7.1.158 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 23544 - 2.7.1.134 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23546 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.3.64 - - - 23548 - parsed ec from reaction file - 2.7.1.140 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23550 - http://www.bacillondex.org/cv/KEGG - 2.7.1.159 - - - 23552 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.4.3 - - - http://www.bacillondex.org/cv/KEGG - 23553 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.6.1.13 - - - 3.1.3.36 - parsed ec from reaction file - 23555 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23558 - 3.1.3.57 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.7.1.150 - 23560 - - - parsed ec from reaction file - 2.7.1.151 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23562 - - - 2.7.1.149 - 23564 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 23566 - parsed ec from reaction file - 3.1.3.62 - http://www.bacillondex.org/evidenceType/IMPD - - - 23567 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 3.1.3.26 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.127 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23572 - - - parsed ec from reaction file - 3.1.4.11 - 23575 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 23577 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.56 - - - http://www.bacillondex.org/cv/KEGG - 2.7.1.68 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23579 - - - parsed ec from reaction file - 2.7.1.64 - http://www.bacillondex.org/evidenceType/IMPD - 23581 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.7.8.11 - 23583 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 23585 - 2.1.1.39 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.1.1.40 - 23587 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23589 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.3.67 - - - parsed ec from reaction file - 23593 - 2.7.1.67 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23595 - http://www.bacillondex.org/cv/KEGG - 3.1.3.66 - - - http://www.bacillondex.org/evidenceType/IMPD - 23598 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 2.7.1.154 - - - http://www.bacillondex.org/cv/KEGG - 2.7.1.137 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23601 - - - 23604 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.153 - parsed ec from reaction file - - - 23608 - 4.1.2.29 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.23 - http://www.bacillondex.org/evidenceType/IMPD - 23613 - parsed ec from reaction file - - - 23615 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.101 - parsed ec from reaction file - - - parsed ec from reaction file - 2.7.1.82 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23617 - - - 2.3.1.52 - parsed ec from reaction file - 23619 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23621 - 3.1.4.13 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 3.1.4.4 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23624 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23627 - parsed ec from reaction file - 2.3.1.6 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23629 - 3.1.1.7 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.1.8 - 23630 - - - 23632 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.4.2 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23634 - parsed ec from reaction file - 2.7.1.32 - - - 2.1.1.17 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23638 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23640 - 3.1.1.4 - parsed ec from reaction file - - - 23642 - parsed ec from reaction file - 3.1.1.32 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.1.43 - 23644 - - - http://www.bacillondex.org/cv/KEGG - 23648 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.3.75 - - - 2.3.1.62 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23651 - - - parsed ec from reaction file - 23658 - 2.1.1.71 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.40 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23661 - - - 23664 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.3.21 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23666 - 2.3.1.42 - http://www.bacillondex.org/cv/KEGG - - - 4.3.1.7 - parsed ec from reaction file - 23669 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.1.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23671 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23673 - 2.1.1.103 - - - parsed ec from reaction file - 23676 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.6.1.26 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.1.5 - http://www.bacillondex.org/cv/KEGG - 23681 - - - 2.7.8.5 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23683 - - - 23689 - parsed ec from reaction file - 2.7.8.24 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 4.3.3.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23691 - - - 23695 - 3.6.1.16 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.8.4 - http://www.bacillondex.org/cv/KEGG - 23702 - - - 3.1.3.27 - 23705 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23709 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.4.4.- - - - http://www.bacillondex.org/cv/KEGG - 3.3.2.6 - 23717 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.14.13.30 - 23720 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 4.4.1.20 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23722 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23724 - http://www.bacillondex.org/cv/KEGG - 1.13.11.34 - - - http://www.bacillondex.org/cv/KEGG - 23731 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.99.1 - - - http://www.bacillondex.org/cv/KEGG - 23734 - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.141 - parsed ec from reaction file - - - 1.1.1.196 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23735 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23737 - http://www.bacillondex.org/cv/KEGG - 3.3.2.10 - - - 3.3.2.- - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23739 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.189 - http://www.bacillondex.org/evidenceType/IMPD - 23745 - parsed ec from reaction file - - - 1.1.1.184 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23746 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.3.2.7 - 23750 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 23757 - 1.1.1.232 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23759 - 1.14.13.34 - parsed ec from reaction file - - - 1.1.1.188 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23761 - parsed ec from reaction file - - - 5.3.99.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23767 - - - http://www.bacillondex.org/cv/KEGG - 23769 - 1.13.11.31 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 5.3.99.4 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23771 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 5.3.99.5 - 23773 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23776 - 1.13.11.33 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.3.99.3 - 23778 - - - 23780 - 1.13.11.40 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.62 - parsed ec from reaction file - 23791 - - - 23792 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.2.1.46 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23794 - 3.5.1.23 - - - 23796 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.8.2.11 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.8.3 - 23799 - http://www.bacillondex.org/cv/KEGG - - - 2.3.1.50 - 23801 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 23804 - http://www.bacillondex.org/evidenceType/IMPD - 3.2.1.18 - - - parsed ec from reaction file - 23807 - 2.7.1.91 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23809 - 2.7.8.10 - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.23 - 23811 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.102 - parsed ec from reaction file - 23813 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.7.1.138 - 23815 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23818 - 2.4.1.80 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23820 - 2.3.1.24 - http://www.bacillondex.org/cv/KEGG - - - 3.2.1.45 - parsed ec from reaction file - 23823 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23826 - 4.1.2.27 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 23831 - parsed ec from reaction file - 2.7.8.27 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 23833 - 3.1.6.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.6.1 - http://www.bacillondex.org/cv/KEGG - 23834 - - - 23836 - parsed ec from reaction file - 3.1.4.41 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.1.4.12 - 23838 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.4.1.47 - 23846 - - - http://www.bacillondex.org/cv/KEGG - 23852 - 4.1.1.31 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.78 - 23855 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 23857 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.38 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 23859 - 2.3.1.54 - parsed ec from reaction file - - - parsed ec from reaction file - 1.2.3.6 - 23861 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 2.8.3.1 - 23865 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.2.6 - 23867 - parsed ec from reaction file - - - parsed ec from reaction file - 1.2.1.23 - http://www.bacillondex.org/evidenceType/IMPD - 23869 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23871 - http://www.bacillondex.org/cv/KEGG - 2.7.9.1 - - - 23874 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.1.22 - - - http://www.bacillondex.org/cv/KEGG - 1.2.1.49 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23876 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.1.99.16 - 23878 - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.1.1.77 - http://www.bacillondex.org/evidenceType/IMPD - 23880 - - - 2.3.3.6 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23883 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23886 - 1.1.2.5 - parsed ec from reaction file - - - 1.1.2.4 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23888 - - - http://www.bacillondex.org/cv/KEGG - 23890 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.28 - - - 23892 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.82 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.2.3 - http://www.bacillondex.org/cv/KEGG - 23894 - - - 1.1.3.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23898 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 23900 - 1.1.99.7 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 4.1.2.36 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23903 - - - 23905 - http://www.bacillondex.org/evidenceType/IMPD - 2.3.3.9 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23907 - http://www.bacillondex.org/cv/KEGG - 5.1.2.1 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.1.2.1 - parsed ec from reaction file - 23910 - - - http://www.bacillondex.org/cv/KEGG - 23912 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.1.10 - - - 6.2.1.13 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 23914 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.13.12.4 - http://www.bacillondex.org/cv/KEGG - 23916 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.2.2.2 - 23920 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 23922 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.78 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.40 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23927 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.7.2.12 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23929 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 23931 - 1.1.1.38 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.39 - http://www.bacillondex.org/cv/KEGG - 23932 - - - 5.3.99.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 23938 - http://www.bacillondex.org/cv/KEGG - - - 1.13.-.- - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 23940 - - - 23944 - parsed ec from reaction file - 1.14.13.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 23954 - 1.14.12.12 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 23963 - parsed ec from reaction file - 1.3.1.29 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 23971 - parsed ec from reaction file - 1.2.3.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 23990 - http://www.bacillondex.org/cv/KEGG - 1.14.12.3 - http://www.bacillondex.org/evidenceType/IMPD - - - 5.1.2.- - 24006 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24009 - 1.7.1.- - - - 1.3.1.49 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24013 - parsed ec from reaction file - - - 24045 - http://www.bacillondex.org/cv/KEGG - 1.13.11.38 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 24048 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.4.4.1 - - - http://www.bacillondex.org/cv/KEGG - 4.1.2.34 - http://www.bacillondex.org/evidenceType/IMPD - 24051 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 24056 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.2.1.65 - - - http://www.bacillondex.org/cv/KEGG - 24072 - http://www.bacillondex.org/evidenceType/IMPD - 3.1.1.35 - parsed ec from reaction file - - - 3.7.1.8 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24074 - http://www.bacillondex.org/evidenceType/IMPD - - - 24092 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.1.1.256 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24095 - http://www.bacillondex.org/cv/KEGG - 1.3.-.- - - - parsed ec from reaction file - 24098 - http://www.bacillondex.org/cv/KEGG - 4.1.3.13 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.1 - 24100 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 5.1.2.5 - 24103 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.3.2.4 - http://www.bacillondex.org/cv/KEGG - 24105 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 24108 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.1.1.40 - - - parsed ec from reaction file - 3.5.1.56 - 24110 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24112 - 5.3.1.22 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 4.2.1.32 - 24114 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.3.1.7 - http://www.bacillondex.org/cv/KEGG - 24116 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 6.2.1.9 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24118 - - - http://www.bacillondex.org/cv/KEGG - 4.1.1.54 - parsed ec from reaction file - 24120 - http://www.bacillondex.org/evidenceType/IMPD - - - 24123 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.12.7.2 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.12.1.2 - http://www.bacillondex.org/cv/KEGG - 24125 - - - 24127 - 2.3.3.7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 4.1.1.8 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24129 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24131 - 1.2.3.5 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.2.1.17 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24133 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.4.9 - http://www.bacillondex.org/cv/KEGG - 24136 - - - 24138 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.4.3 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 24142 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.47 - - - 24144 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.2.1.8 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24146 - 2.8.3.2 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.2.1.5 - 24148 - http://www.bacillondex.org/cv/KEGG - - - 4.1.3.24 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24150 - http://www.bacillondex.org/cv/KEGG - - - 2.7.2.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24152 - parsed ec from reaction file - - - 24154 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.1.99.14 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 24159 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.27 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.3.12 - parsed ec from reaction file - 24162 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.39 - 24164 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 24166 - 1.1.1.60 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.18 - parsed ec from reaction file - 24168 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.2.1.21 - 24170 - parsed ec from reaction file - - - 24172 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.2.2.1 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.92 - parsed ec from reaction file - 24176 - - - http://www.bacillondex.org/cv/KEGG - 1.2.3.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24178 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24180 - 3.1.2.10 - parsed ec from reaction file - - - 3.5.1.49 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24183 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24193 - 2.8.3.8 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24195 - 2.7.9.- - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24197 - http://www.bacillondex.org/cv/KEGG - 4.1.1.59 - - - http://www.bacillondex.org/evidenceType/IMPD - 1.3.99.15 - parsed ec from reaction file - 24199 - http://www.bacillondex.org/cv/KEGG - - - 24201 - http://www.bacillondex.org/cv/KEGG - 1.1.1.259 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 24204 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.5.1.- - - - 24206 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.8.3.15 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.1.70 - parsed ec from reaction file - 24210 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.3.99.21 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24214 - - - http://www.bacillondex.org/cv/KEGG - 24226 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.1.100 - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 6.2.1.25 - 24228 - - - 4.1.99.11 - parsed ec from reaction file - 24231 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 6.4.1.- - 24241 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.97.1.2 - 24243 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24245 - http://www.bacillondex.org/cv/KEGG - 4.1.1.61 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24247 - 1.3.1.57 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 6.2.1.27 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24251 - - - parsed ec from reaction file - 24253 - 1.14.12.13 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 24255 - 1.3.1.62 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.2.1.32 - 24257 - - - 24259 - http://www.bacillondex.org/evidenceType/IMPD - 1.3.99.20 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 24263 - http://www.bacillondex.org/evidenceType/IMPD - 6.2.1.17 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.1.1.41 - 24266 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.30 - http://www.bacillondex.org/cv/KEGG - 24268 - - - 24276 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.3.1 - parsed ec from reaction file - - - 3.1.2.17 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24278 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.7.2 - http://www.bacillondex.org/cv/KEGG - 24283 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24289 - parsed ec from reaction file - 4.2.1.54 - - - 3.5.99.7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24291 - parsed ec from reaction file - - - 24297 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.99 - parsed ec from reaction file - - - 24301 - 2.3.3.5 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.80 - http://www.bacillondex.org/cv/KEGG - 24303 - - - 24313 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.8.1.- - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24319 - http://www.bacillondex.org/cv/KEGG - 1.1.1.5 - - - http://www.bacillondex.org/cv/KEGG - 1.1.1.4 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24322 - - - 6.2.1.16 - 24324 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 3.1.2.11 - http://www.bacillondex.org/evidenceType/IMPD - 24326 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 24331 - 4.2.1.55 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 24333 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.8.3.12 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.36 - 24335 - - - 24338 - parsed ec from reaction file - 1.1.99.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24340 - 5.2.1.1 - http://www.bacillondex.org/cv/KEGG - - - 5.3.3.3 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24342 - http://www.bacillondex.org/cv/KEGG - - - 3.1.1.22 - 24344 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 24350 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.1.57 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24352 - 1.3.1.44 - - - 24355 - parsed ec from reaction file - 3.1.1.75 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 24357 - 4.2.1.31 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24361 - parsed ec from reaction file - 1.1.1.76 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24364 - 6.2.1.2 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.61 - parsed ec from reaction file - 24366 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 5.1.2.4 - 24368 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.1.83 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24370 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 24374 - 4.1.3.25 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 24376 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.8.3.7 - - - parsed ec from reaction file - 24378 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.8.3.11 - - - 4.1.3.22 - parsed ec from reaction file - 24380 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 24382 - parsed ec from reaction file - 4.2.1.34 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.6 - 24384 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 6.3.1.7 - http://www.bacillondex.org/evidenceType/IMPD - 24386 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24388 - 3.5.1.67 - http://www.bacillondex.org/cv/KEGG - - - 24393 - 4.3.1.2 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 24396 - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.56 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24404 - http://www.bacillondex.org/evidenceType/IMPD - 5.4.99.1 - - - 24407 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 2.3.3.11 - - - 24413 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.5.1.20 - parsed ec from reaction file - - - 2.1.1.19 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24415 - parsed ec from reaction file - - - 1.5.1.6 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24419 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.5.1.15 - http://www.bacillondex.org/evidenceType/IMPD - 24421 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24423 - 1.5.7.1 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 24430 - 4.3.1.4 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 24433 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.1.2.7 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.2.1.3 - 24436 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.5.8.1 - 24438 - - - 24440 - 4.1.2.32 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.2.7.4 - 24442 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.13.25 - 24447 - http://www.bacillondex.org/cv/KEGG - - - 24449 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.4.27 - http://www.bacillondex.org/cv/KEGG - - - 4.4.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24451 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.3.-.- - 24453 - - - 24455 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.284 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.5.99.5 - 24459 - http://www.bacillondex.org/cv/KEGG - - - 24461 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.3.13 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 24463 - parsed ec from reaction file - 1.4.99.3 - http://www.bacillondex.org/cv/KEGG - - - 24465 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.244 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24467 - 1.2.1.46 - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24470 - 1.6.6.9 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.169 - http://www.bacillondex.org/cv/KEGG - 24473 - - - parsed ec from reaction file - 1.2.99.2 - http://www.bacillondex.org/evidenceType/IMPD - 24475 - http://www.bacillondex.org/cv/KEGG - - - 2.1.1.21 - 24477 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.2.1.43 - parsed ec from reaction file - 24479 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.5.8.2 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24481 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.1.2.12 - http://www.bacillondex.org/cv/KEGG - 24483 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24485 - 2.3.1.101 - - - 24487 - parsed ec from reaction file - 3.6.1.28 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 24493 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.89 - - - 2.7.4.15 - parsed ec from reaction file - 24498 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24505 - 2.5.1.2 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24507 - http://www.bacillondex.org/cv/KEGG - 1.1.3.23 - - - parsed ec from reaction file - 24517 - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.26 - http://www.bacillondex.org/cv/KEGG - - - 1.1.1.193 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24520 - http://www.bacillondex.org/cv/KEGG - - - 24522 - parsed ec from reaction file - 2.7.1.161 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.5.99.1 - http://www.bacillondex.org/evidenceType/IMPD - 24524 - - - 24528 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.1.99.12 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 2.4.2.21 - 24530 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 3.6.1.18 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24532 - - - 24534 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.3.73 - parsed ec from reaction file - - - 2.7.7.2 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24536 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24541 - 2.7.1.35 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 24544 - http://www.bacillondex.org/cv/KEGG - 2.6.1.54 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.72 - http://www.bacillondex.org/cv/KEGG - 24546 - parsed ec from reaction file - - - 2.6.99.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24548 - - - http://www.bacillondex.org/cv/KEGG - 24550 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.3.5 - - - http://www.bacillondex.org/cv/KEGG - 24551 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.3.12 - - - 2.6.1.30 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24554 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24558 - 1.14.12.5 - parsed ec from reaction file - - - 2.6.1.31 - 24561 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 3.1.3.74 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24564 - parsed ec from reaction file - - - 24566 - parsed ec from reaction file - 4.1.1.51 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24568 - http://www.bacillondex.org/cv/KEGG - 1.14.12.4 - - - http://www.bacillondex.org/evidenceType/IMPD - 24571 - 3.5.1.66 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24574 - parsed ec from reaction file - 3.5.1.29 - - - 24576 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.1.99.9 - - - 3.1.1.27 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24578 - - - http://www.bacillondex.org/cv/KEGG - 24584 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.290 - - - 24588 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.1.1.107 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.65 - http://www.bacillondex.org/cv/KEGG - 24594 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24596 - 1.2.3.8 - - - http://www.bacillondex.org/cv/KEGG - 24598 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.262 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24601 - 1.5.3.6 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.13.11.9 - 24606 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.19 - parsed ec from reaction file - 24608 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.5.3.5 - http://www.bacillondex.org/evidenceType/IMPD - 24610 - - - 24612 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.7.7.1 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24614 - 1.6.1.2 - http://www.bacillondex.org/cv/KEGG - - - 1.6.1.1 - parsed ec from reaction file - 24615 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24617 - parsed ec from reaction file - 3.6.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.5.99.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24619 - - - parsed ec from reaction file - 6.3.5.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24624 - - - 24628 - parsed ec from reaction file - 1.3.7.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24631 - parsed ec from reaction file - 1.4.1.21 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 24634 - parsed ec from reaction file - 3.2.2.5 - http://www.bacillondex.org/evidenceType/IMPD - - - 3.2.2.6 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24635 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.1.3.32 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24637 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24639 - http://www.bacillondex.org/cv/KEGG - 1.1.1.291 - - - 2.1.1.7 - parsed ec from reaction file - 24641 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24643 - 4.2.1.85 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24645 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.2.18 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 24647 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.17.1.5 - - - parsed ec from reaction file - 24650 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.3.3.6 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24663 - http://www.bacillondex.org/cv/KEGG - 1.17.3.3 - - - 24666 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 3.2.2.14 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24668 - 2.4.2.12 - - - http://www.bacillondex.org/cv/KEGG - 24670 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.2.19 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.1.1.1 - http://www.bacillondex.org/cv/KEGG - 24675 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24678 - parsed ec from reaction file - 5.4.99.4 - - - http://www.bacillondex.org/cv/KEGG - 1.14.13.10 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24680 - - - http://www.bacillondex.org/cv/KEGG - 24682 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.1.22 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24685 - 3.5.1.42 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24687 - 1.2.1.33 - - - 24693 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.36 - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.1.106 - 24695 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 24698 - parsed ec from reaction file - 3.5.1.22 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24700 - parsed ec from reaction file - 3.1.4.14 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.84 - 24702 - - - http://www.bacillondex.org/cv/KEGG - 24704 - 3.5.1.92 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 4.1.1.30 - http://www.bacillondex.org/evidenceType/IMPD - 24706 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.7.1.34 - 24708 - - - 24714 - http://www.bacillondex.org/cv/KEGG - 6.3.2.5 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24718 - parsed ec from reaction file - 2.1.2.11 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 6.3.4.15 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 24721 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 6.3.4.11 - 24722 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24723 - 6.3.4.10 - http://www.bacillondex.org/cv/KEGG - - - 24724 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 6.3.4.9 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24726 - 6.2.1.11 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 3.5.1.12 - 24728 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 2.6.1.62 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24732 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 24740 - 2.3.1.181 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24745 - parsed ec from reaction file - 1.5.99.11 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.2.99.5 - http://www.bacillondex.org/cv/KEGG - 24748 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 24754 - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.86 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 6.3.2.12 - 24757 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.4.19.9 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24761 - - - 1.8.98.1 - 24763 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 24766 - 2.8.4.1 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 24768 - 1.5.99.9 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 24772 - 2.7.6.3 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.12.98.1 - 24774 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.1.1.153 - 24780 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24784 - 1.1.1.220 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.5.1.34 - parsed ec from reaction file - 24790 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 24794 - parsed ec from reaction file - 6.1.1.17 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 6.3.1.10 - http://www.bacillondex.org/cv/KEGG - 24796 - - - 24798 - 1.3.1.54 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24800 - http://www.bacillondex.org/evidenceType/IMPD - 1.16.1.6 - - - 1.3.1.33 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24808 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24811 - 4.1.1.81 - - - 24814 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.62 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.18.-.- - 24816 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.99.3 - 24821 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 24824 - http://www.bacillondex.org/evidenceType/IMPD - 6.6.1.1 - parsed ec from reaction file - - - 4.4.1.17 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24826 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24828 - http://www.bacillondex.org/cv/KEGG - 1.3.7.4 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.16.1.4 - 24830 - http://www.bacillondex.org/cv/KEGG - - - 1.16.1.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24832 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 24835 - 1.3.3.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24839 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.81 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.16.1.2 - 24842 - - - http://www.bacillondex.org/cv/KEGG - 2.1.1.132 - parsed ec from reaction file - 24847 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.6.1.43 - 24852 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24855 - 1.3.1.75 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.24 - 24859 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24864 - http://www.bacillondex.org/cv/KEGG - 1.3.7.3 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 24866 - 1.3.7.2 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 24868 - 1.3.7.5 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 6.3.1.- - 24871 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 5.4.1.2 - 24873 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24877 - parsed ec from reaction file - 1.3.3.5 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.16.1.5 - 24880 - - - 24883 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.16.3.1 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 24887 - 2.1.1.131 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.151 - http://www.bacillondex.org/cv/KEGG - 24890 - - - 24894 - 4.99.1.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.1.1.133 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 24899 - - - http://www.bacillondex.org/cv/KEGG - 1.16.8.1 - 24907 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24909 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.1.1.152 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.5.1.17 - http://www.bacillondex.org/cv/KEGG - 24912 - - - 2.7.1.156 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24916 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.6.1.2 - 24923 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.1.90 - 24925 - http://www.bacillondex.org/cv/KEGG - - - 6.3.5.10 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24927 - parsed ec from reaction file - - - 24929 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 6.3.5.9 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.7.8.26 - 24931 - - - http://www.bacillondex.org/cv/KEGG - 24933 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.7.62 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.3.99.22 - 24938 - parsed ec from reaction file - - - 3.1.1.14 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 24943 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.1.1.11 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24945 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24949 - http://www.bacillondex.org/cv/KEGG - 1.14.13.83 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.130 - 24951 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.76 - 24953 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24955 - 2.5.1.29 - - - http://www.bacillondex.org/cv/KEGG - 1.3.1.83 - http://www.bacillondex.org/evidenceType/IMPD - 24957 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.88 - 24959 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.34 - 24961 - parsed ec from reaction file - - - 24963 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.68 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24966 - 2.5.1.1 - - - http://www.bacillondex.org/cv/KEGG - 24968 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.5.1.33 - - - 1.17.1.2 - 24970 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 24974 - 2.7.1.148 - - - 24978 - http://www.bacillondex.org/cv/KEGG - 2.7.1.36 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 24980 - http://www.bacillondex.org/cv/KEGG - 2.7.7.60 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.17.7.1 - 24982 - - - parsed ec from reaction file - 24984 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.7.4.2 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.3.27 - 24986 - http://www.bacillondex.org/cv/KEGG - - - 24989 - parsed ec from reaction file - 2.5.1.20 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 24991 - 4.1.1.33 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 24998 - http://www.bacillondex.org/cv/KEGG - 2.5.1.11 - - - http://www.bacillondex.org/evidenceType/IMPD - 4.6.1.12 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 25002 - - - 1.1.1.267 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 25006 - - - 25008 - parsed ec from reaction file - 1.1.1.243 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 3.1.1.83 - parsed ec from reaction file - 25023 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.3.2.8 - 25031 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 1.14.13.80 - parsed ec from reaction file - 25034 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25037 - http://www.bacillondex.org/cv/KEGG - 1.1.1.275 - - - 25041 - parsed ec from reaction file - 1.14.13.48 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.14.13.49 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25046 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25059 - 1.2.-.- - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 5.5.1.10 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 25062 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25071 - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.144 - - - 25077 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.11 - parsed ec from reaction file - - - 25078 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.20 - parsed ec from reaction file - - - 25079 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.5.4.7 - - - 3.5.4.23 - 25080 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 3.5.4.15 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25081 - - - http://www.bacillondex.org/cv/KEGG - 25082 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.4.24 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.5.4.18 - 25083 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.44 - http://www.bacillondex.org/cv/KEGG - 25086 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25087 - 3.5.1.43 - parsed ec from reaction file - - - 25088 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 3.5.1.20 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 6.3.1.4 - http://www.bacillondex.org/evidenceType/IMPD - 25091 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25093 - parsed ec from reaction file - 1.4.3.8 - - - 1.4.3.12 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25094 - - - 4.3.1.23 - 25096 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - 4.3.1.10 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25097 - - - 25099 - 4.3.1.20 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.7.99.1 - 25102 - - - http://www.bacillondex.org/cv/KEGG - 1.7.1.10 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25103 - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 25105 - 1.4.1.8 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.1.5 - 25106 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25107 - 1.4.1.7 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25108 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.1.15 - - - 25109 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.4.1.19 - http://www.bacillondex.org/cv/KEGG - - - 25110 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.4.1.10 - parsed ec from reaction file - - - 1.7.2.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25112 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.7.99.7 - 25115 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 25117 - 1.4.3.11 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.9.6.1 - 25127 - - - 1.4.7.1 - 25129 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.7.7.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25132 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.7.7.1 - http://www.bacillondex.org/cv/KEGG - 25134 - - - 25136 - 1.7.3.4 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.13.11.32 - 25138 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.7.1.1 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25140 - - - http://www.bacillondex.org/cv/KEGG - 25141 - parsed ec from reaction file - 1.7.1.2 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.7.3.1 - http://www.bacillondex.org/cv/KEGG - 25143 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.7.1.3 - 25145 - - - 25147 - parsed ec from reaction file - 4.4.1.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.7.2.2 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25151 - - - 1.18.6.1 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25154 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.19.6.1 - 25156 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 4.2.1.104 - 25158 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.7.99.6 - parsed ec from reaction file - 25161 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.8.2.1 - 25163 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25168 - 2.8.2.15 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25169 - http://www.bacillondex.org/cv/KEGG - 2.8.2.4 - - - 25171 - parsed ec from reaction file - 1.13.11.18 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 25173 - parsed ec from reaction file - 1.8.3.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 2.8.1.5 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25175 - - - http://www.bacillondex.org/cv/KEGG - 25177 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.8.2.5 - - - parsed ec from reaction file - 25179 - http://www.bacillondex.org/evidenceType/IMPD - 1.8.1.2 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25181 - 3.6.2.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 2.8.2.2 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25183 - - - 2.7.7.5 - 25185 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 2.8.2.6 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25187 - - - 25189 - http://www.bacillondex.org/cv/KEGG - 3.12.1.1 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 3.1.3.7 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25191 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.8.2.3 - http://www.bacillondex.org/cv/KEGG - 25193 - - - 1.8.2.1 - http://www.bacillondex.org/cv/KEGG - 25198 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 25200 - http://www.bacillondex.org/cv/KEGG - 1.1.1.258 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 25207 - http://www.bacillondex.org/evidenceType/IMPD - 1.2.1.63 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 3.10.1.2 - http://www.bacillondex.org/cv/KEGG - 25213 - parsed ec from reaction file - - - parsed ec from reaction file - 25215 - 1.14.13.22 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 25220 - 1.1.1.174 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 25222 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.1.1.245 - - - 25225 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.15.- - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.103 - http://www.bacillondex.org/cv/KEGG - 25227 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25229 - 6.1.1.23 - http://www.bacillondex.org/cv/KEGG - - - 25233 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.1.1.18 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25248 - 6.1.1.- - - - 6.1.1.26 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25250 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25252 - http://www.bacillondex.org/cv/KEGG - 6.3.5.7 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 6.3.5.6 - http://www.bacillondex.org/cv/KEGG - 25254 - - - 2.9.1.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25256 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25261 - parsed ec from reaction file - 6.1.1.25 - - - 25269 - parsed ec from reaction file - 1.14.19.1 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.14.19.3 - 25275 - - - 1.3.1.28 - parsed ec from reaction file - 25302 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 25304 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.102 - - - 25305 - 2.4.1.148 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 2.4.1.122 - 25307 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 25309 - 2.4.1.147 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25311 - http://www.bacillondex.org/cv/KEGG - 2.4.1.41 - - - 25315 - http://www.bacillondex.org/cv/KEGG - 1.14.15.6 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.97.1.8 - http://www.bacillondex.org/evidenceType/IMPD - 25318 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 25325 - http://www.bacillondex.org/cv/KEGG - 2.4.1.198 - parsed ec from reaction file - - - 3.5.1.89 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25327 - parsed ec from reaction file - - - 2.3.-.- - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25329 - - - http://www.bacillondex.org/cv/KEGG - 25331 - 2.4.99.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25334 - 2.4.99.4 - parsed ec from reaction file - - - 1.1.1.247 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25338 - - - http://www.bacillondex.org/cv/KEGG - 2.1.1.128 - 25340 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25344 - 1.1.1.50 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.53 - 25346 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25351 - 5.5.1.9 - parsed ec from reaction file - - - 25353 - 2.4.1.152 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 1.14.99.9 - 25355 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 25358 - parsed ec from reaction file - 1.2.1.44 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.68 - http://www.bacillondex.org/cv/KEGG - 25361 - parsed ec from reaction file - - - 25363 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.3.45 - parsed ec from reaction file - - - 25365 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.3.3.5 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.7.7.38 - 25367 - - - 25370 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.69 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.4.1.37 - http://www.bacillondex.org/evidenceType/IMPD - 25372 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.4.99.10 - 25376 - parsed ec from reaction file - - - 25379 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.1.1.145 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.3.3.1 - parsed ec from reaction file - 25380 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25382 - parsed ec from reaction file - 1.14.99.10 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.3.1.72 - http://www.bacillondex.org/cv/KEGG - 25386 - - - 1.14.13.72 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25388 - - - http://www.bacillondex.org/cv/KEGG - 25392 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.21.6 - - - parsed ec from reaction file - 3.8.1.8 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25397 - - - parsed ec from reaction file - 25399 - http://www.bacillondex.org/evidenceType/IMPD - 3.5.2.15 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 25401 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.5.99.4 - - - 3.5.1.84 - parsed ec from reaction file - 25403 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25406 - http://www.bacillondex.org/cv/KEGG - 2.4.1.86 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 3.5.99.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25408 - - - parsed ec from reaction file - 2.7.1.108 - http://www.bacillondex.org/evidenceType/IMPD - 25410 - http://www.bacillondex.org/cv/KEGG - - - 3.2.1.35 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25416 - - - 25422 - 2.4.1.83 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.1.4.48 - 25424 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 25426 - 3.1.1.47 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 25428 - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.117 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 2.1.1.41 - 25431 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 1.3.1.70 - parsed ec from reaction file - 25434 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 25439 - 1.1.1.270 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 1.1.1.170 - parsed ec from reaction file - 25441 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 25447 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 4.2.1.92 - - - 25454 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.2.1.51 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 4.2.3.19 - 25456 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.13.11.12 - 25459 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25466 - parsed ec from reaction file - 1.1.1.195 - - - 25487 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.2.1.3 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 25491 - 1.2.3.11 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.105 - 25493 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 25495 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.2.1.36 - - - http://www.bacillondex.org/cv/KEGG - 3.1.3.51 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25507 - - - parsed ec from reaction file - 25518 - 1.14.11.14 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 4.3.3.2 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25520 - - - 25522 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.68 - - - parsed ec from reaction file - 2.4.1.38 - 25524 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 25527 - 2.4.1.201 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.155 - parsed ec from reaction file - 25529 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25531 - 2.4.1.91 - - - parsed ec from reaction file - 2.4.99.1 - 25535 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25538 - 2.3.1.176 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 6.2.1.7 - http://www.bacillondex.org/cv/KEGG - 25540 - - - parsed ec from reaction file - 3.5.1.24 - http://www.bacillondex.org/evidenceType/IMPD - 25542 - http://www.bacillondex.org/cv/KEGG - - - 25544 - 4.2.3.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.2.1.106 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25548 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.4.1.145 - 25552 - - - 2.4.1.144 - 25554 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 25556 - parsed ec from reaction file - 2.4.1.143 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 25558 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 3.2.1.114 - - - 25560 - 2.4.1.101 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25562 - 1.14.11.23 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25564 - 3.2.1.113 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 3.2.1.84 - 25566 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.-.-.- - parsed ec from reaction file - 25570 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 2.7.8.15 - parsed ec from reaction file - 25574 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25576 - http://www.bacillondex.org/cv/KEGG - 2.4.1.132 - - - 2.4.1.119 - http://www.bacillondex.org/cv/KEGG - 25578 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 2.4.1.163 - 25580 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 25581 - parsed ec from reaction file - 2.4.1.149 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.141 - 25583 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25586 - http://www.bacillondex.org/cv/KEGG - 2.4.1.142 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.206 - http://www.bacillondex.org/cv/KEGG - 25588 - - - 2.4.1.62 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25593 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.1.1.194 - 25598 - parsed ec from reaction file - - - 1.3.1.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25603 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 25606 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.1.107 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.228 - 25610 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.88 - parsed ec from reaction file - 25613 - - - 2.4.1.79 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25615 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25620 - 2.4.1.92 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25625 - 1.14.13.95 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 3.1.6.14 - http://www.bacillondex.org/cv/KEGG - 25637 - - - 25643 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.99.9 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 2.4.1.224 - 25645 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25647 - http://www.bacillondex.org/cv/KEGG - 2.4.1.225 - - - parsed ec from reaction file - 25649 - http://www.bacillondex.org/evidenceType/IMPD - 3.1.6.4 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25651 - 3.2.1.103 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25655 - 3.2.-.- - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25658 - 3.1.6.13 - http://www.bacillondex.org/cv/KEGG - - - 25660 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.99.8 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25662 - 3.2.1.76 - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.134 - http://www.bacillondex.org/cv/KEGG - 25665 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 2.4.1.133 - 25667 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25670 - http://www.bacillondex.org/cv/KEGG - 2.4.1.174 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.135 - parsed ec from reaction file - 25673 - http://www.bacillondex.org/cv/KEGG - - - 25676 - parsed ec from reaction file - 3.1.6.18 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.2.1.50 - 25678 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 25681 - parsed ec from reaction file - 2.4.2.26 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25683 - 2.3.1.78 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 3.10.1.1 - http://www.bacillondex.org/evidenceType/IMPD - 25685 - http://www.bacillondex.org/cv/KEGG - - - 2.4.1.232 - parsed ec from reaction file - 25687 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 1.14.99.30 - 25691 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 25694 - 1.14.13.15 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 3.1.6.12 - parsed ec from reaction file - 25697 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 25700 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.223 - - - 2.4.1.226 - parsed ec from reaction file - 25703 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.175 - parsed ec from reaction file - 25707 - - - 2.3.1.150 - http://www.bacillondex.org/cv/KEGG - 25709 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.8.99.- - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25713 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25717 - http://www.bacillondex.org/cv/KEGG - 1.1.1.206 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25719 - parsed ec from reaction file - 1.1.1.146 - - - http://www.bacillondex.org/cv/KEGG - 1.14.15.4 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25723 - - - http://www.bacillondex.org/cv/KEGG - 1.14.12.7 - http://www.bacillondex.org/evidenceType/IMPD - 25725 - parsed ec from reaction file - - - 25727 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.5.3.12 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.99.7 - http://www.bacillondex.org/cv/KEGG - 25731 - - - 25733 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.5.1.21 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.3.99.7 - 25736 - parsed ec from reaction file - - - 1.14.15.5 - 25738 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.1.40 - 25741 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 2.5.1.55 - 25745 - - - 2.4.1.150 - http://www.bacillondex.org/cv/KEGG - 25749 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - parsed ec from reaction file - 25754 - 5.4.99.8 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.99.36 - 25756 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.21 - parsed ec from reaction file - 25758 - - - 2.4.1.115 - 25760 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - 25762 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.4.1.65 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.4.99.6 - 25777 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25783 - parsed ec from reaction file - 2.1.1.104 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 1.2.3.14 - http://www.bacillondex.org/evidenceType/IMPD - 25787 - - - parsed ec from reaction file - 1.14.13.69 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25790 - - - 25792 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.13.20 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25794 - http://www.bacillondex.org/cv/KEGG - 2.4.1.131 - - - 4.2.3.20 - parsed ec from reaction file - 25799 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.13.11.51 - 25808 - - - parsed ec from reaction file - 1.1.1.288 - 25810 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.14.13.90 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25815 - - - 25827 - 2.1.1.53 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - 2.5.1.8 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25839 - - - http://www.bacillondex.org/cv/KEGG - 25853 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.99.6 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 1.17.99.1 - 25869 - parsed ec from reaction file - - - 1.14.13.13 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25873 - parsed ec from reaction file - - - 4.1.1.55 - http://www.bacillondex.org/evidenceType/IMPD - 25875 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25877 - 5.4.99.7 - - - http://www.bacillondex.org/cv/KEGG - 25880 - parsed ec from reaction file - 4.2.1.78 - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 25882 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.5.1.26 - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.13.37 - 25885 - parsed ec from reaction file - - - 2.1.1.120 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25895 - - - 25897 - 1.14.13.57 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.1.1.119 - 25899 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.14.13.56 - 25901 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 25908 - 2.7.1.130 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.3.1.66 - 25912 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25914 - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.68 - - - http://www.bacillondex.org/cv/KEGG - 25916 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.13.70 - - - parsed ec from reaction file - 1.14.13.71 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25918 - - - 25923 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.17.99.2 - - - 4.3.3.3 - parsed ec from reaction file - 25927 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25932 - 2.4.1.182 - http://www.bacillondex.org/cv/KEGG - - - 25935 - parsed ec from reaction file - 3.1.1.2 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 25937 - parsed ec from reaction file - 4.2.3.14 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25939 - 1.14.13.84 - - - 25950 - 1.1.1.248 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 1.14.13.55 - 25953 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.14.21.4 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25955 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.5.1.27 - http://www.bacillondex.org/cv/KEGG - 25958 - - - parsed ec from reaction file - 1.14.21.1 - http://www.bacillondex.org/evidenceType/IMPD - 25960 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25962 - http://www.bacillondex.org/cv/KEGG - 2.1.1.140 - http://www.bacillondex.org/evidenceType/IMPD - - - 2.1.1.115 - 25963 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - 25965 - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.122 - parsed ec from reaction file - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25968 - http://www.bacillondex.org/cv/KEGG - 1.3.3.9 - - - parsed ec from reaction file - 25970 - 1.14.13.74 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 25972 - http://www.bacillondex.org/cv/KEGG - 1.1.1.62 - http://www.bacillondex.org/evidenceType/IMPD - - - 25976 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 4.2.3.22 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25979 - 1.1.1.181 - - - parsed ec from reaction file - 25982 - http://www.bacillondex.org/evidenceType/IMPD - 1.14.11.19 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 25988 - 2.7.8.22 - - - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - 25991 - 6.2.1.33 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 25994 - http://www.bacillondex.org/cv/KEGG - 1.1.1.51 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 25998 - parsed ec from reaction file - 1.14.12.18 - - - 26002 - http://www.bacillondex.org/cv/KEGG - 1.14.13.88 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - 1.1.1.219 - http://www.bacillondex.org/evidenceType/IMPD - 26004 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 26007 - parsed ec from reaction file - 1.3.1.64 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 26009 - 1.3.1.63 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.3.9 - 26016 - - - parsed ec from reaction file - 26018 - 1.14.13.50 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.3.1.67 - 26022 - parsed ec from reaction file - - - 4.2.3.13 - http://www.bacillondex.org/cv/KEGG - 26029 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 26033 - http://www.bacillondex.org/cv/KEGG - 2.7.1.19 - - - http://www.bacillondex.org/cv/KEGG - 26039 - 3.1.7.3 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 26041 - 1.4.1.18 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 26045 - 4.5.1.1 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 1.17.99.3 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 26048 - - - 5.1.99.4 - http://www.bacillondex.org/cv/KEGG - 26051 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.21 - http://www.bacillondex.org/cv/KEGG - 26059 - - - http://www.bacillondex.org/cv/KEGG - 1.14.13.17 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 26064 - - - 1.3.1.71 - parsed ec from reaction file - 26067 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - 26073 - parsed ec from reaction file - 1.3.1.56 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 5.3.99.6 - http://www.bacillondex.org/evidenceType/IMPD - 26078 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.3.1.42 - 26080 - http://www.bacillondex.org/cv/KEGG - - - 1.14.11.12 - http://www.bacillondex.org/evidenceType/IMPD - 26083 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - 26091 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 2.3.1.167 - - - 26093 - 2.3.1.166 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - 1.14.13.77 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 26096 - http://www.bacillondex.org/evidenceType/IMPD - - - 26098 - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 1.14.99.37 - http://www.bacillondex.org/evidenceType/IMPD - - - parsed ec from reaction file - 26101 - http://www.bacillondex.org/evidenceType/IMPD - 4.2.3.17 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 26103 - 4.2.3.18 - http://www.bacillondex.org/cv/KEGG - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 26105 - http://www.bacillondex.org/cv/KEGG - 4.1.2.30 - - - http://www.bacillondex.org/cv/KEGG - 2.3.1.67 - 26111 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.14.99.19 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 26113 - - - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.2.1.10 - http://www.bacillondex.org/cv/KEGG - 26115 - - - http://www.bacillondex.org/evidenceType/IMPD - 2.3.1.129 - 26117 - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 26120 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.1.3.59 - - - 2.3.1.105 - http://www.bacillondex.org/cv/KEGG - 26122 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - - - http://www.bacillondex.org/evidenceType/IMPD - 26125 - http://www.bacillondex.org/cv/KEGG - 4.2.3.11 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 26127 - parsed ec from reaction file - 5.5.1.8 - - - 26130 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.13.79 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 5.5.1.12 - 26132 - parsed ec from reaction file - - - 26136 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 1.14.13.78 - parsed ec from reaction file - - - 4.2.3.16 - 26138 - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - 3.1.3.37 - http://www.bacillondex.org/cv/KEGG - 26143 - parsed ec from reaction file - - - 26145 - 2.4.1.130 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - parsed ec from reaction file - - - 26152 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 3.8.1.7 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 26157 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 2.4.1.159 - - - 1.10.99.3 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 26161 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 1.14.11.15 - http://www.bacillondex.org/evidenceType/IMPD - 26163 - parsed ec from reaction file - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 26166 - http://www.bacillondex.org/cv/KEGG - 3.2.1.105 - - - http://www.bacillondex.org/cv/KEGG - 26169 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 5.5.1.13 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 4.2.3.8 - 26171 - - - 1.14.11.11 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 26174 - parsed ec from reaction file - - - parsed ec from reaction file - 5.5.1.6 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - 26178 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - 2.1.1.116 - 26180 - parsed ec from reaction file - - - http://www.bacillondex.org/cv/KEGG - 26183 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 1.14.21.2 - - - http://www.bacillondex.org/cv/KEGG - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 26186 - 1.1.1.64 - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 1.21.3.3 - http://www.bacillondex.org/cv/KEGG - 26189 - - - 1.1.1.239 - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - http://www.bacillondex.org/cv/KEGG - 26191 - - - 1.1.1.63 - parsed ec from reaction file - http://www.bacillondex.org/evidenceType/IMPD - 26192 - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/cv/KEGG - 1.14.11.22 - parsed ec from reaction file - 26195 - http://www.bacillondex.org/evidenceType/IMPD - - - 26198 - parsed ec from reaction file - 1.14.11.9 - http://www.bacillondex.org/evidenceType/IMPD - http://www.bacillondex.org/cv/KEGG - - - http://www.bacillondex.org/evidenceType/IMPD - parsed ec from reaction file - 5.1.3.20 - http://www.bacillondex.org/cv/KEGG - 26200 - - - - - - - diff --git a/sybiont_generator/sybiontkb_rdfversion_inferred.rdf b/sybiont_generator/sybiontkb_rdfversion_inferred.ttl similarity index 99% rename from sybiont_generator/sybiontkb_rdfversion_inferred.rdf rename to sybiont_generator/sybiontkb_rdfversion_inferred.ttl index 767664f..5a08205 100644 --- a/sybiont_generator/sybiontkb_rdfversion_inferred.rdf +++ b/sybiont_generator/sybiontkb_rdfversion_inferred.ttl @@ -182,15 +182,6 @@ bo:12665 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01207"@en ; tawny:name "12665"@en . -bo:7391 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Lipopetide antibiotic iturin A;4'-phosphopantetheinyl transferase"@en ; - rdfs:label "lpa-14"@en ; - sybio:accession "B3VSA5"^^xsd:string , "P39144"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - tawny:name "7391"@en . - bo:19044 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]"@en ; rdfs:label "LPXK"@en ; @@ -201,6 +192,15 @@ bo:19044 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00912"@en ; tawny:name "19044"@en . +bo:7391 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Lipopetide antibiotic iturin A;4'-phosphopantetheinyl transferase"@en ; + rdfs:label "lpa-14"@en ; + sybio:accession "B3VSA5"^^xsd:string , "P39144"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + tawny:name "7391"@en . + bo:31553 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU18420;"@en ; rdfs:label "BSU18420"@en , "ftsR"@en , "yofA"@en ; @@ -578,6 +578,16 @@ bo:32470 a sybio:CDS , owl:NamedIndividual ; "126.0"@en ; tawny:name "32470"@en . +bo:13670 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C5H8O4"@en ; + rdfs:label "C5H8O4"@en , "2-(Hydroxymethyl)-4-oxobutanoate"@en , "2-Hydroxymethyl succinate semialdehyde"@en , "alpha-Hydroxymethyl succinate semialdehyde"@en ; + sybio:accession "6797"^^xsd:string , "C04106"^^xsd:string , "17413"^^xsd:string , "B04927"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24570 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C04106"@en ; + tawny:name "13670"@en . + bo:28980 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU14410"@en ; rdfs:label "sipT"@en , "BSU14410"@en ; @@ -606,16 +616,6 @@ bo:28980 a sybio:CDS , owl:NamedIndividual ; "8.0"@en ; tawny:name "28980"@en . -bo:13670 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C5H8O4"@en ; - rdfs:label "C5H8O4"@en , "2-(Hydroxymethyl)-4-oxobutanoate"@en , "2-Hydroxymethyl succinate semialdehyde"@en , "alpha-Hydroxymethyl succinate semialdehyde"@en ; - sybio:accession "6797"^^xsd:string , "C04106"^^xsd:string , "17413"^^xsd:string , "B04927"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24570 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C04106"@en ; - tawny:name "13670"@en . - bo:9987 a sybio:Protein , owl:NamedIndividual , bo:565 ; rdfs:comment "Uncharacterized glycosyltransferase ykoT"@en , "BSU13390;putative glycosyltransferase;"@en ; rdfs:label "BSU13390"@en , "ykoT"@en , "YkoT"@en ; @@ -718,16 +718,6 @@ bo:31428 a owl:NamedIndividual , sybio:CDS ; "82.0"@en ; tawny:name "31428"@en . -bo:27938 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "acuA_RBS"@en ; - sybio:NA "ATTGATGGGACGGTGAATTA"^^xsd:string ; - sybio:begin "3040072"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3040091"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30763 ; - tawny:name "27938"@en . - bo:12628 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C9H16N3O2S"@en ; rdfs:label "C9H16N3O2S"@en , "Ergothioneine"@en ; @@ -739,6 +729,16 @@ bo:12628 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05570"@en ; tawny:name "12628"@en . +bo:27938 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "acuA_RBS"@en ; + sybio:NA "ATTGATGGGACGGTGAATTA"^^xsd:string ; + sybio:begin "3040072"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3040091"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30763 ; + tawny:name "27938"@en . + bo:19007 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3[EC:2.4.1.135]"@en ; rdfs:label "B3GAT3"@en ; @@ -904,11 +904,11 @@ bo:25305 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:label "GO:0016020"@en , "membrane"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Biological_membrane"^^xsd:string ; + owl:hasValue "GO:0016020"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016020"^^xsd:string ; + owl:hasValue "Biological_membrane"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -1102,11 +1102,11 @@ bo:13545 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glucarate catabolic process"@en , "GO:0019394"@en , "glucarate degradation"@en , "glucarate catabolism"@en , "glucarate breakdown"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUCARDEG-PWY"^^xsd:string ; + owl:hasValue "GO:0019394"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019394"^^xsd:string ; + owl:hasValue "GLUCARDEG-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -1126,11 +1126,11 @@ bo:13545 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BRANCHED-CHAINAMINOTRANSFERLEU-RXN"^^xsd:string ; + owl:hasValue "2.6.1.42"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.42"^^xsd:string ; + owl:hasValue "BRANCHED-CHAINAMINOTRANSFERLEU-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -1617,6 +1617,17 @@ bo:32308 a sybio:CDS , owl:NamedIndividual ; "55.0"@en ; tawny:name "32308"@en . +bo:13508 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C2H5ClO"@en ; + rdfs:label "Glycol chlorohydrin"@en , "2-Chloroethanol"@en , "C2H5ClO"@en , "Ethylene chlorohydrin"@en ; + sybio:accession "107-07-3"^^xsd:string , "C06753"^^xsd:string , "28200"^^xsd:string , "B01042"^^xsd:string , "8974"^^xsd:string ; + sybio:consumedBy bo:24184 , bo:24185 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24185 , bo:24184 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06753"@en ; + tawny:name "13508"@en . + bo:28818 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU15510"@en , "carbamoyl phosphate synthase small subunit (EC:6.3.5.5)"@en ; rdfs:label "BSU15510"@en , "pyrAA"@en ; @@ -1644,32 +1655,21 @@ bo:28818 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu15510"@en ; tawny:name "28818"@en . -bo:13508 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C2H5ClO"@en ; - rdfs:label "Glycol chlorohydrin"@en , "2-Chloroethanol"@en , "C2H5ClO"@en , "Ethylene chlorohydrin"@en ; - sybio:accession "107-07-3"^^xsd:string , "C06753"^^xsd:string , "28200"^^xsd:string , "B01042"^^xsd:string , "8974"^^xsd:string ; - sybio:consumedBy bo:24184 , bo:24185 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24185 , bo:24184 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06753"@en ; - tawny:name "13508"@en . - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein."@en ; rdfs:label "GO:0004047"@en , "aminomethyltransferase"@en , "glycine synthase"@en , "protein-8-S-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase"@en , "glycine-cleavage system T-protein"@en , "tetrahydrofolate aminomethyltransferase"@en , "T-protein"@en , "protein-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GCVT-RXN"^^xsd:string ; + owl:hasValue "2.1.2.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004047"^^xsd:string ; + owl:hasValue "GCVT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.10"^^xsd:string ; + owl:hasValue "GO:0004047"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -2117,17 +2117,6 @@ bo:3690 a sybio:NegativelyRegulatedOperator , sybio:Opera sybio:sigmaFactor "SigA"^^xsd:string ; tawny:name "3690"@en . -bo:21289 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "C04494 + C00001 <=> C01228 + C00009"@en , "cpd:C04494 <=> cpd:C04494"@en , "Guanosine 3'-diphosphate 5'-triphosphate 5'-phosphohydrolase"@en ; - sybio:accession "RN:R03409"^^xsd:string ; - sybio:catalyzedBy bo:15382 ; - sybio:catalyzingClass bo:21290 , bo:21291 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11574 ; - tawny:name "21289"@en . - bo:27014 a sybio:MicroarrayExperiment , owl:NamedIndividual ; rdfs:comment "B.subtilis SigY regulon, sigY overexpression"@en ; rdfs:label "ex0000340"@en ; @@ -2139,6 +2128,17 @@ bo:27014 a sybio:MicroarrayExperiment , owl:NamedIndividua sybio:targetExperiment "strain 168/pDG148-sigY trpC2 /pDG148-sigY, temperature: 37 deg C\nharvest point: OD600=0.26, middle logarithmic phase"@en ; tawny:name "27014"@en . +bo:21289 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "C04494 + C00001 <=> C01228 + C00009"@en , "cpd:C04494 <=> cpd:C04494"@en , "Guanosine 3'-diphosphate 5'-triphosphate 5'-phosphohydrolase"@en ; + sybio:accession "RN:R03409"^^xsd:string ; + sybio:catalyzedBy bo:15382 ; + sybio:catalyzingClass bo:21290 , bo:21291 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11574 ; + tawny:name "21289"@en . + bo:21377 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.17.4.1"@en ; @@ -2321,11 +2321,11 @@ bo:2912 a sybio:ConstitutiveSigAPromoter , owl:NamedIndiv rdfs:label "ARD"@en , "acireductone dioxygenase"@en , "acireductone dioxygenase (Ni2+-requiring)"@en , "2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase"@en , "E-2"@en , "1 oxidoreductase"@en , "GO:0010308"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.13.11.53"^^xsd:string ; + owl:hasValue "GO:0010308"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0010308"^^xsd:string ; + owl:hasValue "1.13.11.53"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -2385,21 +2385,6 @@ bo:22382 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11734 , bo:11607 ; tawny:name "22382"@en . -bo:3389 a sybio:SigLPromoter , owl:NamedIndividual , sybio:Promoter ; - rdfs:label "rocG"@en ; - sybio:NA "CAAAAGCTGGTACGGATCTTGCATGATGATAAGGGTGAATCC"^^xsd:string ; - sybio:annotatedSequence "CAAAAGC{TGGTA}CGGAT{CTTGCATG}ATGATAAGG/G/T/G/AATCC"@en ; - sybio:begin "3882135"@en ; - sybio:boundBy bo:2609 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3882094"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "10468601"^^xsd:string ; - sybio:tfbsEnd "+8"@en ; - sybio:tfbsStart "-34"^^xsd:string ; - sybio:upstreamOf bo:28417 , bo:32670 ; - tawny:name "3389"@en . - bo:9114 a bo:200 , sybio:Protein , owl:NamedIndividual , bo:601 ; rdfs:comment "Probable endopeptidase lytE"@en , "cell wall hydrolase; phosphatase-associated protein (major autolysin);BSU09420;"@en ; rdfs:label "BSU09420"@en , "lytE"@en , "LytE"@en ; @@ -2420,6 +2405,21 @@ bo:9114 a bo:200 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "9114"@en . +bo:3389 a sybio:SigLPromoter , owl:NamedIndividual , sybio:Promoter ; + rdfs:label "rocG"@en ; + sybio:NA "CAAAAGCTGGTACGGATCTTGCATGATGATAAGGGTGAATCC"^^xsd:string ; + sybio:annotatedSequence "CAAAAGC{TGGTA}CGGAT{CTTGCATG}ATGATAAGG/G/T/G/AATCC"@en ; + sybio:begin "3882135"@en ; + sybio:boundBy bo:2609 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3882094"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "10468601"^^xsd:string ; + sybio:tfbsEnd "+8"@en ; + sybio:tfbsStart "-34"^^xsd:string ; + sybio:upstreamOf bo:28417 , bo:32670 ; + tawny:name "3389"@en . + bo:22470 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.14.13.14"@en ; @@ -2566,11 +2566,11 @@ bo:21516 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "enzyme transporter"@en , "holin"@en , "protein transporter"@en , "protein carrier"@en , "protein transport chaperone"@en , "secretin"@en , "GO:0008565"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008565"^^xsd:string ; + owl:hasValue "GO:0015463"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015463"^^xsd:string ; + owl:hasValue "GO:0008565"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -2628,7 +2628,7 @@ bo:18856 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "ribulokinase"@en , "5-phosphotransferase"@en , "L-ribulokinase"@en , "GO:0008741"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBULOKIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.16"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -2636,7 +2636,7 @@ bo:18856 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.16"^^xsd:string ; + owl:hasValue "RIBULOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -2721,6 +2721,14 @@ bo:4482 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4481 ; tawny:name "4482"@en . +bo:4570 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "phoB-ydhF"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:33025 , bo:30945 ; + sybio:operonGenes "phoB,ydhF"@en ; + tawny:name "4570"@en . + a owl:Class ; rdfs:comment "The directed movement of magnesium (Mg) ions into, out of, within or between cells by means of some external agent such as a transporter or pore.;"@en ; @@ -2743,14 +2751,6 @@ bo:16223 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01607"@en ; tawny:name "16223"@en . -bo:4570 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "phoB-ydhF"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:33025 , bo:30945 ; - sybio:operonGenes "phoB,ydhF"@en ; - tawny:name "4570"@en . - bo:16311 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "kynurenine 3-monooxygenase [EC:1.14.13.9]"@en ; rdfs:label "E1.14.13.9"@en ; @@ -2943,6 +2943,18 @@ bo:10497 a sybio:Protein , bo:772 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10497"@en . +bo:25895 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.1.1.120"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.1.1.120"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25895"@en . + bo:10585 a bo:364 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU37700;efflux protein for bacilysin excretion, self-protection against bacilysin"@en , "Putative bacilysin exporter bacE;"@en ; rdfs:label "bacE"@en , "Ipa-84d"@en , "BSU37700"@en , "YwfF"@en , "BacE"@en ; @@ -2961,17 +2973,16 @@ bo:10585 a bo:364 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "10585"@en . -bo:25895 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.1.1.120"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.120"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25895"@en . +bo:25983 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "toluene-4-sulfonate monooxygenase - reversible"@en ; + rdfs:label "cpd:C01468 <=> cpd:C01468"@en , "2 C06677 + C00007 + 2 C00080 <=> 2 C01468 + 2 C11481"@en ; + sybio:accession "RN:R07663"^^xsd:string ; + sybio:catalyzedBy bo:16024 ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25983"@en . bo:10673 a owl:NamedIndividual , bo:609 , bo:374 , sybio:Protein ; rdfs:comment "BSU05170;putative transcriptional regulator (AraC/XylS family)"@en , "Uncharacterized HTH-type transcriptional regulator ydeE"@en ; @@ -2993,17 +3004,6 @@ bo:10673 a owl:NamedIndividual , bo:609 , bo:374 , sybio:P tawny:name "10673"@en ; owl:sameAs bo:6611 . -bo:25983 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "toluene-4-sulfonate monooxygenase - reversible"@en ; - rdfs:label "cpd:C01468 <=> cpd:C01468"@en , "2 C06677 + C00007 + 2 C00080 <=> 2 C01468 + 2 C11481"@en ; - sybio:accession "RN:R07663"^^xsd:string ; - sybio:catalyzedBy bo:16024 ; - sybio:catalyzingClass bo:21056 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25983"@en . - bo:17052 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "inositol-polyphosphate multikinase [EC:2.7.1.151]"@en ; rdfs:label "E2.7.1.151"@en , "IPMK"@en ; @@ -3049,17 +3049,6 @@ bo:17140 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01517"@en ; tawny:name "17140"@en . -bo:251 a owl:Class ; - rdfs:label "COG1188"@en ; - rdfs:subClassOf bo:194 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1188"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "251"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents."@en ; @@ -3072,6 +3061,17 @@ bo:251 a owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:251 a owl:Class ; + rdfs:label "COG1188"@en ; + rdfs:subClassOf bo:194 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1188"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "251"@en . + bo:23086 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "C16075 <=> C16074 + C00001"@en , "(Z)-phenylacetaldehyde-oxime hydro-lyase"@en , " <=> "@en ; @@ -3317,11 +3317,11 @@ bo:24091 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003984"^^xsd:string ; + owl:hasValue "2.2.1.6"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.2.1.6"^^xsd:string ; + owl:hasValue "GO:0003984"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -3764,6 +3764,24 @@ bo:30177 a owl:NamedIndividual , sybio:CDS ; "10.0"@en ; tawny:name "30177"@en . +bo:26687 a bo:1120 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Probable 2-ketogluconate reductase;;derived protein"@en , "putative 2-hydroxyacid dehydrogenase;BSU34680"@en ; + rdfs:label "BSU34680"@en , "YvcT"@en , "yvcT"@en ; + sybio:AA "LLKPFVFITKPIPEEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLAAIQGQTPKNLTREFQ"@en ; + sybio:accession "O32264"^^xsd:string , "936519"^^xsd:string , "BSU34680"^^xsd:string , "16080521"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32960 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "36599.38"^^xsd:string ; + sybio:pI "5.253365"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26687"@en . + bo:11377 a owl:NamedIndividual , bo:353 , sybio:Protein , bo:356 ; rdfs:comment "BSU03820;putative iron-siderophore ABC transporter (ATP-binding protein)"@en , "Uncharacterized ABC transporter ATP-binding protein yclP;"@en ; rdfs:label "BSU03820"@en , "yclP"@en , "YclP"@en ; @@ -3784,24 +3802,6 @@ bo:11377 a owl:NamedIndividual , bo:353 , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "11377"@en . -bo:26687 a bo:1120 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Probable 2-ketogluconate reductase;;derived protein"@en , "putative 2-hydroxyacid dehydrogenase;BSU34680"@en ; - rdfs:label "BSU34680"@en , "YvcT"@en , "yvcT"@en ; - sybio:AA "LLKPFVFITKPIPEEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLAAIQGQTPKNLTREFQ"@en ; - sybio:accession "O32264"^^xsd:string , "936519"^^xsd:string , "BSU34680"^^xsd:string , "16080521"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32960 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "36599.38"^^xsd:string ; - sybio:pI "5.253365"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26687"@en . - bo:30265 a owl:NamedIndividual , sybio:KinaseEncodingCDS , sybio:CDS ; rdfs:comment "BSU26420"@en ; rdfs:label "yrkQ"@en , "BSU26420"@en ; @@ -3827,26 +3827,6 @@ bo:30265 a owl:NamedIndividual , sybio:KinaseEncodingCDS , sy "148.0"@en ; tawny:name "30265"@en . -bo:11465 a bo:650 , bo:651 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "putative chaperone or protease;BSU05920"@en , "Uncharacterized protein ydiC;"@en ; - rdfs:label "BSU05920"@en , "YdiC"@en , "ydiC"@en ; - sybio:AA "MTILAIDTSNYTLGIALLREDTVIAEYITYLKKNHSVRAMPAVHSLLNDCDMAPQDLSKIVVAKGPGSYTGVRIGVTLAKTLAWSLDIPISAVSSLETLAANGRHFDGLISPIFDARRGQVYTGLYQYKNGLLEQVVPDQNVMLADWLEMLKEKDRPVLFLGHDTSLHKQMIEDVLGTKGFIGTAAQHNPRPSELAFLGKEKEAADVHGLVPDYLRLAEAEAKWIESQK"@en ; - sybio:accession "BSU05920"^^xsd:string , "O05516"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32012 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "3.8 : Protein modification"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "25242.03"^^xsd:string ; - sybio:pI "5.803017"^^xsd:string ; - sybio:productType "pf : putative factor"^^xsd:string ; - sybio:relatedTo bo:9137 , bo:26753 , bo:11466 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11465"@en . - bo:26775 a sybio:Protein , owl:NamedIndividual , bo:1800 , bo:1801 ; rdfs:comment "BSU35740;glycerol-3-phosphate cytidylyltransferase"@en , "Glycerol-3-phosphate cytidylyltransferase;derived protein"@en ; rdfs:label "tagD"@en , "TagD"@en , "BSU35740"@en ; @@ -3867,6 +3847,26 @@ bo:26775 a sybio:Protein , owl:NamedIndividual , bo:1800 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26775"@en . +bo:11465 a bo:650 , bo:651 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "putative chaperone or protease;BSU05920"@en , "Uncharacterized protein ydiC;"@en ; + rdfs:label "BSU05920"@en , "YdiC"@en , "ydiC"@en ; + sybio:AA "MTILAIDTSNYTLGIALLREDTVIAEYITYLKKNHSVRAMPAVHSLLNDCDMAPQDLSKIVVAKGPGSYTGVRIGVTLAKTLAWSLDIPISAVSSLETLAANGRHFDGLISPIFDARRGQVYTGLYQYKNGLLEQVVPDQNVMLADWLEMLKEKDRPVLFLGHDTSLHKQMIEDVLGTKGFIGTAAQHNPRPSELAFLGKEKEAADVHGLVPDYLRLAEAEAKWIESQK"@en ; + sybio:accession "BSU05920"^^xsd:string , "O05516"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32012 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "3.8 : Protein modification"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "25242.03"^^xsd:string ; + sybio:pI "5.803017"^^xsd:string ; + sybio:productType "pf : putative factor"^^xsd:string ; + sybio:relatedTo bo:9137 , bo:26753 , bo:11466 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11465"@en . + bo:6191 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yxiA_terminator"@en ; sybio:NA "GAAGCGCCTTCGAGGGAAGGTGTTTTTTTATGAGCTT"^^xsd:string ; @@ -3904,22 +3904,6 @@ bo:30353 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30353"@en . -bo:11553 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00040.png"@en ; - rdfs:label "Pentose and glucuronate interconversions"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00040"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11648 , bo:11559 , bo:11652 , bo:11551 , bo:11557 ; - sybio:derivesFrom bo:11554 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00040"@en ; - tawny:name "11553"@en . - bo:26863 a bo:757 , owl:NamedIndividual , bo:1412 , sybio:Protein ; rdfs:comment "6-phosphogluconate dehydrogenase, decarboxylating;derived protein"@en , "BSU40080;NAD+-6-phosphogluconate dehydrogenase"@en ; rdfs:label "gntZ"@en , "BSU40080"@en , "GntZ"@en ; @@ -3939,6 +3923,22 @@ bo:26863 a bo:757 , owl:NamedIndividual , bo:1412 , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "26863"@en . +bo:11553 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00040.png"@en ; + rdfs:label "Pentose and glucuronate interconversions"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00040"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11648 , bo:11559 , bo:11652 , bo:11551 , bo:11557 ; + sybio:derivesFrom bo:11554 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00040"@en ; + tawny:name "11553"@en . + bo:30441 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32230;"@en ; rdfs:label "BSU32230"@en , "yuxL"@en ; @@ -4146,31 +4146,31 @@ bo:31094 a sybio:CDS , owl:NamedIndividual ; rdfs:label "microsomal p450"@en , "aryl hydrocarbon hydroxylase"@en , "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen"@en , "flavoprotein-linked monooxygenase"@en , "unspecific monooxygenase"@en , "substrate reduced-flavoprotein:oxygen oxidoreductase"@en , "microsomal P-450"@en , "cytochrome p450"@en , "cytochrome P450 CYP19"@en , "GO:0016712"@en , "aryl-4-monooxygenase"@en , "xenobiotic monooxygenase"@en , "flavoprotein monooxygenase"@en , "microsomal monooxygenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016712"^^xsd:string ; + owl:hasValue "GO:0008402"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050381"^^xsd:string ; + owl:hasValue "748 \"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "748 \"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen\""^^xsd:string ; + owl:hasValue "UNSPECIFIC-MONOOXYGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008402"^^xsd:string ; + owl:hasValue "GO:0050381"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UNSPECIFIC-MONOOXYGENASE-RXN"^^xsd:string ; + owl:hasValue "GO:0016712"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.14.-"^^xsd:string ; + owl:hasValue "e0551"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0551"^^xsd:string ; + owl:hasValue "1.14.14.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -4827,15 +4827,15 @@ bo:12521 a sybio:Compound , owl:NamedIndividual ; rdfs:label "MtPDC"@en , "pyruvate dehydrogenase (acetyl-transferring)"@en , "pyruvate dehydrogenase"@en , "pyruvate:lipoamide 2-oxidoreductase"@en , "pyruvate dehydrogenase complex"@en , "GO:0004739"@en , "pyruvate:dihydrolipoyllysine-residue acetyltransferase-lipoyllysine 2-oxidoreductase"@en , "PDH"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14213 \"pyruvate dehydrogenase (acetyl-transferring) activity\""^^xsd:string ; + owl:hasValue "GO:0004739"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.4.1"^^xsd:string ; + owl:hasValue "14213 \"pyruvate dehydrogenase (acetyl-transferring) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004739"^^xsd:string ; + owl:hasValue "1.2.4.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -4847,7 +4847,7 @@ bo:12521 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0004827"@en , "L-proline:tRNAPro ligase"@en , "prolyl-tRNA synthetase"@en , "prolyl-s-RNA synthetase"@en , "prolinyl-tRNA ligase"@en , "prolyl-transferRNA synthetase"@en , "proline-tRNA ligase"@en , "proline translase"@en , "prolyl-transfer ribonucleate synthetase"@en , "prolyl-transfer ribonucleic acid synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.15"^^xsd:string ; + owl:hasValue "PROLINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -4855,11 +4855,11 @@ bo:12521 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15107 \"proline-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "6.1.1.15"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROLINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "15107 \"proline-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -5378,16 +5378,6 @@ bo:15946 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00296"@en ; tawny:name "15946"@en . -bo:16688 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]"@en ; - rdfs:label "RRM2"@en ; - sybio:accession "0004748"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16689 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10807+K10808"@en ; - tawny:name "16688"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid."@en ; @@ -5400,6 +5390,16 @@ bo:16688 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16688 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]"@en ; + rdfs:label "RRM2"@en ; + sybio:accession "0004748"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16689 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10807+K10808"@en ; + tawny:name "16688"@en . + bo:16776 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "UDP-glucose 4,6-dehydratase [EC:4.2.1.76]"@en ; rdfs:label "RHM"@en ; @@ -6207,11 +6207,11 @@ bo:2365 a owl:NamedIndividual , sybio:Protein ; rdfs:label "GO:0019301"@en , "rhamnose catabolism"@en , "rhamnose catabolic process"@en , "rhamnose degradation"@en , "rhamnose breakdown"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RHAMCAT-PWY"^^xsd:string ; + owl:hasValue "GO:0019301"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019301"^^xsd:string ; + owl:hasValue "RHAMCAT-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -6450,11 +6450,11 @@ bo:17920 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.1.4.14"@en , "ACPH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3124"^^xsd:string ; + owl:hasValue "0008770"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008770"^^xsd:string ; + owl:hasValue "COG3124"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -7045,11 +7045,11 @@ bo:18448 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "BENB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG5517"^^xsd:string ; + owl:hasValue "0018623"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018623"^^xsd:string ; + owl:hasValue "COG5517"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -7421,18 +7421,6 @@ bo:12986 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C17942"@en ; tawny:name "12986"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues."@en ; - rdfs:label "glucan biosynthesis"@en , "glucan synthesis"@en , "glucan biosynthetic process"@en , "GO:0009250"@en , "glucan anabolism"@en , "glucan formation"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009250"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:19365 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "2.7.2.4"@en ; @@ -7445,6 +7433,18 @@ bo:19365 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19365"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues."@en ; + rdfs:label "glucan biosynthesis"@en , "glucan synthesis"@en , "glucan biosynthetic process"@en , "GO:0009250"@en , "glucan anabolism"@en , "glucan formation"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0009250"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:3208 a sybio:Promoter , owl:NamedIndividual , sybio:SigFPromoter ; rdfs:label "gpr"@en ; sybio:NA "TTTAGCATGATTTATTCAGCAAATGGCAACAATATAGGTACT"^^xsd:string ; @@ -7561,6 +7561,18 @@ bo:10089 a owl:NamedIndividual , bo:405 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10089"@en . +bo:25487 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "5.2.1.3"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "5.2.1.3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25487"@en . + bo:10177 a bo:606 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU18790;putative factor of the oxidative stress response"@en , "Uncharacterized protease yoaZ"@en ; rdfs:label "yoaZ"@en , "BSU18790"@en , "YoaZ"@en ; @@ -7578,17 +7590,16 @@ bo:10177 a bo:606 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10177"@en . -bo:25487 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "5.2.1.3"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.2.1.3"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25487"@en . +bo:25575 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G00003 <=> gl:G00003"@en , "G10614 + G00003 <=> G10620 + G00004"@en ; + sybio:accession "RN:R05973"^^xsd:string ; + sybio:catalyzedBy bo:18676 ; + sybio:catalyzingClass bo:25576 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25575"@en . bo:10265 a owl:NamedIndividual , bo:985 , sybio:Protein , bo:847 ; rdfs:comment "Uncharacterized protein ypbG"@en , "putative phosphoesterase;BSU22980;"@en ; @@ -7607,16 +7618,15 @@ bo:10265 a owl:NamedIndividual , bo:985 , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "10265"@en . -bo:25575 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G00003 <=> gl:G00003"@en , "G10614 + G00003 <=> G10620 + G00004"@en ; - sybio:accession "RN:R05973"^^xsd:string ; - sybio:catalyzedBy bo:18676 ; - sybio:catalyzingClass bo:25576 ; +bo:25663 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label " => "@en , "G10609 + G00109 <=> G10619 + G00110"@en ; + sybio:accession "RN:R05941"^^xsd:string ; + sybio:catalyzingClass bo:25593 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25575"@en . + tawny:name "25663"@en . bo:10353 a owl:NamedIndividual , sybio:Protein , bo:1519 ; rdfs:comment "Uncharacterized transporter yrhG"@en , "BSU27200;putative formate/nitrite transporter"@en ; @@ -7637,16 +7647,6 @@ bo:10353 a owl:NamedIndividual , sybio:Protein , bo:1519 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10353"@en . -bo:25663 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label " => "@en , "G10609 + G00109 <=> G10619 + G00110"@en ; - sybio:accession "RN:R05941"^^xsd:string ; - sybio:catalyzingClass bo:25593 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25663"@en . - bo:25751 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "C04623 <=> C06636 + C00698"@en , "cpd:C04623 <=> cpd:C04623"@en ; @@ -7863,6 +7863,25 @@ bo:11094 a owl:NamedIndividual , sybio:Protein , bo:405 , sybio:taxId "[224308, 1423]"@en ; tawny:name "11094"@en . +bo:26492 a owl:NamedIndividual , sybio:Protein , bo:1412 , bo:757 ; + rdfs:comment "6-phosphogluconate dehydrogenase, decarboxylating 2;derived protein"@en , "NADP+-dependent 6-P-gluconate dehydrogenase;BSU23860"@en ; + rdfs:label "GndA"@en , "YqjI"@en , "BSU23860"@en , "yqjI"@en ; + sybio:AA "MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK"@en ; + sybio:accession "BSU23860"^^xsd:string , "938695"^^xsd:string , "P80859"^^xsd:string , "50812264"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28906 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "2.1.2 : Main glycolytic pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "51773"^^xsd:string ; + sybio:pI "5.246742"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26529 , bo:26862 , bo:26801 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26492"@en . + bo:11182 a bo:495 , owl:NamedIndividual , bo:400 , sybio:Protein ; rdfs:comment "NADH dehydrogenase"@en , "alkyl hydroperoxide reductase (large subunit);BSU40100"@en ; rdfs:label "AhpF"@en , "ahpF"@en , "BSU40100"@en ; @@ -7883,25 +7902,6 @@ bo:11182 a bo:495 , owl:NamedIndividual , bo:400 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "11182"@en . -bo:26492 a owl:NamedIndividual , sybio:Protein , bo:1412 , bo:757 ; - rdfs:comment "6-phosphogluconate dehydrogenase, decarboxylating 2;derived protein"@en , "NADP+-dependent 6-P-gluconate dehydrogenase;BSU23860"@en ; - rdfs:label "GndA"@en , "YqjI"@en , "BSU23860"@en , "yqjI"@en ; - sybio:AA "MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK"@en ; - sybio:accession "BSU23860"^^xsd:string , "938695"^^xsd:string , "P80859"^^xsd:string , "50812264"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28906 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "2.1.2 : Main glycolytic pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "51773"^^xsd:string ; - sybio:pI "5.246742"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26529 , bo:26862 , bo:26801 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26492"@en . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the formation of new phosphodiester bonds between a pair of short, unique DNA target sequences; occurs through a phosphotyrosyl intermediate in which the target sequence is first cleaved by the nucleophilic attack by a tyrosine in the active site."@en ; @@ -7939,27 +7939,6 @@ bo:30070 a sybio:CDS , owl:NamedIndividual ; "5.0"@en ; tawny:name "30070"@en . -bo:11270 a owl:NamedIndividual , sybio:Protein , bo:315 ; - rdfs:comment "BSU01110;ribosomal protein S7 (BS7)"@en , "30S ribosomal protein S7"@en ; - rdfs:label "rpsG"@en , "RpsG"@en , "BSU01110"@en ; - sybio:AA "MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW"@en ; - sybio:accession "P21469"^^xsd:string , "BSU01110"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29182 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11269 , bo:11266 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "17882.075"^^xsd:string ; - sybio:pI "10.028481"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11279 , bo:9361 , bo:11277 , bo:9218 , bo:11289 , bo:11291 , bo:11290 , bo:11274 , bo:11294 , bo:11278 , bo:11280 , bo:9765 , bo:11300 , bo:11299 , bo:11271 , bo:11286 , bo:11283 , bo:11284 , bo:9360 , bo:11281 , bo:11275 , bo:11287 , bo:9378 , bo:11288 , bo:11273 , bo:11272 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11270"@en . - bo:26580 a sybio:Protein , bo:1583 , owl:NamedIndividual ; rdfs:comment "Phenylalanyl-tRNA synthetase alpha chain;derived protein"@en , "phenylalanyl-tRNA synthetase (alpha subunit);BSU28640;;;"@en ; rdfs:label "BSU28640"@en , "pheS"@en , "PheS"@en ; @@ -7981,6 +7960,27 @@ bo:26580 a sybio:Protein , bo:1583 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26580"@en . +bo:11270 a owl:NamedIndividual , sybio:Protein , bo:315 ; + rdfs:comment "BSU01110;ribosomal protein S7 (BS7)"@en , "30S ribosomal protein S7"@en ; + rdfs:label "rpsG"@en , "RpsG"@en , "BSU01110"@en ; + sybio:AA "MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW"@en ; + sybio:accession "P21469"^^xsd:string , "BSU01110"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29182 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11269 , bo:11266 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "17882.075"^^xsd:string ; + sybio:pI "10.028481"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11279 , bo:9361 , bo:11277 , bo:9218 , bo:11289 , bo:11291 , bo:11290 , bo:11274 , bo:11294 , bo:11278 , bo:11280 , bo:9765 , bo:11300 , bo:11299 , bo:11271 , bo:11286 , bo:11283 , bo:11284 , bo:9360 , bo:11281 , bo:11275 , bo:11287 , bo:9378 , bo:11288 , bo:11273 , bo:11272 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11270"@en . + bo:31749 a sybio:KinaseEncodingCDS , sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU36520"@en ; rdfs:label "glnK"@en , "nrgB"@en , "BSU36520"@en ; @@ -8123,19 +8123,19 @@ bo:19504 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "gamma-glutamyltransferase"@en , "alpha-glutamyl transpeptidase"@en , "L-gamma-glutamyl transpeptidase"@en , "gamma-GTP"@en , "L-gamma-glutamyltransferase"@en , "gamma-GPT"@en , "gamma-glutamyl peptidyltransferase"@en , "glutamyl transpeptidase"@en , "gamma-glutamyl transpeptidase"@en , "GO:0003840"@en , "gamma-GT"@en , "L-glutamyltransferase"@en , "5-glutamyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GAMMA-GLUTAMYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "11628 \"gamma-glutamyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11628 \"gamma-glutamyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0003840"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.2.2"^^xsd:string ; + owl:hasValue "GAMMA-GLUTAMYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003840"^^xsd:string ; + owl:hasValue "2.3.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -8453,26 +8453,6 @@ bo:32930 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu30280"@en ; tawny:name "32930"@en . -bo:11057 a owl:NamedIndividual , sybio:Protein , bo:1773 ; - rdfs:comment "BSU35150;putative flagellin;"@en , "Putative flagellin yvzB"@en ; - rdfs:label "yvzB"@en , "BSU35150"@en , "YvzB"@en ; - sybio:AA "MDALIEEVDGISNRTEFNGKKLLDGTETDGFTFQIGANAGQQLTVNIDSMSSTALGVNALNVTDFANTPFDTQLESIDTAINNVSNQRAKLGAVQNRLEHTINNLGASSENLTAAESRIRDVDMAKEMSEFTKNNIPSQASQAMLAQANQQPQNVLQLLR"@en ; - sybio:accession "BSU35150"^^xsd:string , "O34366"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32319 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "17314.405"^^xsd:string ; - sybio:pI "4.44352"^^xsd:string ; - sybio:productType "ps : putative structure"^^xsd:string ; - sybio:relatedTo bo:11112 , bo:11069 , bo:11070 , bo:11071 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11057"@en . - bo:26367 a bo:414 , owl:NamedIndividual , bo:413 , sybio:Protein ; rdfs:comment "Carbamoyl-phosphate synthase pyrimidine-specific large chain;derived protein"@en , "BSU15520;pyrimidine-specific carbamoyl-phosphate synthetase (large subunit);"@en ; rdfs:label "PyrAB"@en , "BSU15520"@en , "pyrAB"@en ; @@ -8493,6 +8473,26 @@ bo:26367 a bo:414 , owl:NamedIndividual , bo:413 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26367"@en . +bo:11057 a owl:NamedIndividual , sybio:Protein , bo:1773 ; + rdfs:comment "BSU35150;putative flagellin;"@en , "Putative flagellin yvzB"@en ; + rdfs:label "yvzB"@en , "BSU35150"@en , "YvzB"@en ; + sybio:AA "MDALIEEVDGISNRTEFNGKKLLDGTETDGFTFQIGANAGQQLTVNIDSMSSTALGVNALNVTDFANTPFDTQLESIDTAINNVSNQRAKLGAVQNRLEHTINNLGASSENLTAAESRIRDVDMAKEMSEFTKNNIPSQASQAMLAQANQQPQNVLQLLR"@en ; + sybio:accession "BSU35150"^^xsd:string , "O34366"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32319 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "17314.405"^^xsd:string ; + sybio:pI "4.44352"^^xsd:string ; + sybio:productType "ps : putative structure"^^xsd:string ; + sybio:relatedTo bo:11112 , bo:11069 , bo:11070 , bo:11071 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11057"@en . + bo:26455 a sybio:Protein , owl:NamedIndividual , bo:1016 ; rdfs:comment "Prephenate dehydrogenase;derived protein"@en , "BSU22610;prephenate dehydrogenase;;"@en ; rdfs:label "tyrA"@en , "TyrA"@en , "BSU22610"@en ; @@ -8687,11 +8687,11 @@ bo:14695 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "SDHA"@en , "SDH1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008177"^^xsd:string ; + owl:hasValue "COG1053"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1053"^^xsd:string ; + owl:hasValue "0008177"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -8822,27 +8822,27 @@ bo:13829 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glycerol phosphate dehydrogenase"@en , "dehydrogenase glycerol phosphate"@en , "NAD-independent glycerol phosphate dehydrogenase"@en , "sn-glycerol 3-phosphate oxidase"@en , "2-oxidoreductase"@en , "sn-glycerol-3-phosphate dehydrogenase"@en , "pyridine nucleotide-independent L-glycerol 3-phosphate dehydrogenase"@en , "FAD-dependent glycerol-3-phosphate dehydrogenase"@en , "DL-glycerol 3-phosphate oxidase"@en , "GO:0004368"@en , "FAD-linked glycerol 3-phosphate dehydrogenase"@en , "glycerol 3-phosphate cytochrome c reductase"@en , "sn-glycerol-3-phosphate:acceptor 2-oxidoreductase"@en , "FAD-dependent sn-glycerol-3-phosphate dehydrogenase"@en , "alpha-glycerophosphate dehydrogenase"@en , "flavoprotein-linked L-glycerol 3-phosphate dehydrogenase"@en , "FAD-linked L-glycerol-3-phosphate dehydrogenase"@en , "L-3-glycerophosphate-ubiquinone oxidoreductase"@en , "glycerophosphate dehydrogenase"@en , "flavin-linked glycerol-3-phosphate dehydrogenase"@en , "glycerol-3-phosphate dehydrogenase"@en , "L-glycerol-3-phosphate dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-5260"^^xsd:string ; + owl:hasValue "RXN-9927"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.99.5"^^xsd:string ; + owl:hasValue "10535 \"glycerol-3-phosphate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004368"^^xsd:string ; + owl:hasValue "RXN0-5258"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-5258"^^xsd:string ; + owl:hasValue "GO:0004368"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10535 \"glycerol-3-phosphate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "1.1.99.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-9927"^^xsd:string ; + owl:hasValue "RXN0-5260"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -8923,11 +8923,11 @@ bo:32805 a sybio:CDS , owl:NamedIndividual ; rdfs:label "phosphopantothenate-cysteine ligase"@en , "phosphopantothenate--cysteine ligase"@en , "phosphopantothenoylcysteine synthetase"@en , "GO:0004632"@en , "ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004632"^^xsd:string ; + owl:hasValue "13381 \"phosphopantothenate--cysteine ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13381 \"phosphopantothenate--cysteine ligase activity\""^^xsd:string ; + owl:hasValue "P-PANTOCYSLIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -8935,7 +8935,7 @@ bo:32805 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P-PANTOCYSLIG-RXN"^^xsd:string ; + owl:hasValue "GO:0004632"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -9102,11 +9102,11 @@ bo:14746 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "EDD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0129"^^xsd:string ; + owl:hasValue "0004456"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004456"^^xsd:string ; + owl:hasValue "COG0129"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -9317,15 +9317,15 @@ bo:1290 a owl:Class ; rdfs:label "hydroxymethylglutaryl coenzyme A-cleaving enzyme"@en , "3-hydroxy-3-methylglutarate-CoA lyase"@en , "hydroxymethylglutaryl-CoA lyase"@en , "hydroxymethylglutaryl coenzyme A lyase"@en , "3-hydroxy-3-methylglutaryl coenzyme A lyase"@en , "HMG-CoA lyase"@en , "3-hydroxy-3-methylglutaryl CoA cleaving enzyme"@en , "acetoacetate-lyase"@en , "GO:0004419"@en , "3-hydroxy-3-methylglutaryl-CoA lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004419"^^xsd:string ; + owl:hasValue "4.1.3.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.4"^^xsd:string ; + owl:hasValue "74178 \"hydroxymethylglutaryl-CoA lyase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "74178 \"hydroxymethylglutaryl-CoA lyase activity\""^^xsd:string ; + owl:hasValue "GO:0004419"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -9377,11 +9377,11 @@ bo:15487 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GADB"@en , "E4.1.1.15"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004351"^^xsd:string ; + owl:hasValue "COG0076"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0076"^^xsd:string ; + owl:hasValue "0004351"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -9848,16 +9848,6 @@ bo:28039 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30865 ; tawny:name "28039"@en . -bo:16544 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "aldehyde dehydrogenase"@en ; - rdfs:label "PHPJ"@en ; - sybio:accession "Q5IW32"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16545 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12907"@en ; - tawny:name "16544"@en . - bo:4891 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "mecA_terminator"@en ; sybio:NA "GCAAACCGATTTCCTTCCGGAAATCGGTTTTTTTTATGCACG"^^xsd:string ; @@ -9880,6 +9870,16 @@ bo:28127 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31373 ; tawny:name "28127"@en . +bo:16544 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "aldehyde dehydrogenase"@en ; + rdfs:label "PHPJ"@en ; + sybio:accession "Q5IW32"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16545 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12907"@en ; + tawny:name "16544"@en . + bo:16632 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "glutamin-(asparagin-)ase [EC:3.5.1.38]"@en ; rdfs:label "E3.5.1.38"@en ; @@ -10141,27 +10141,27 @@ bo:17373 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00116"@en ; tawny:name "17373"@en . -bo:484 a owl:Class ; - rdfs:label "COG0171"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:1216 a owl:Class ; + rdfs:label "COG4112"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0171"^^xsd:string ; + owl:hasValue "COG4112"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "484"@en . + tawny:name "1216"@en . -bo:1216 a owl:Class ; - rdfs:label "COG4112"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:484 a owl:Class ; + rdfs:label "COG0171"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4112"^^xsd:string ; + owl:hasValue "COG0171"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1216"@en . + tawny:name "484"@en . bo:17461 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "PAH dioxygenase small subunit [EC:1.13.11.-]"@en ; @@ -10172,17 +10172,6 @@ bo:17461 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11943+K11944"@en ; tawny:name "17461"@en . -bo:572 a owl:Class ; - rdfs:label "COG0628"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0628"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "572"@en . - bo:29044 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "sulfate adenylyltransferase (EC:2.7.7.4)"@en , "BSU10920"@en ; rdfs:label "yitA"@en , "BSU10920"@en ; @@ -10221,6 +10210,17 @@ bo:1304 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1304"@en . +bo:572 a owl:Class ; + rdfs:label "COG0628"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0628"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "572"@en . + bo:29132 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU04350"@en ; sybio:accession "BSU04350"^^xsd:string ; @@ -10253,31 +10253,20 @@ bo:660 a owl:Class ; rdfs:label "polymethylgalacturonic transeliminase"@en , "PL"@en , "pectin lyase"@en , "PNL"@en , "pectolyase"@en , "PMGL"@en , "lyase"@en , "endo-pectin lyase"@en , "pectin trans-eliminase"@en , "pectin methyltranseliminase"@en , "GO:0047490"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.2.10-RXN"^^xsd:string ; + owl:hasValue "GO:0047490"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047490"^^xsd:string ; + owl:hasValue "4.2.2.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.2.10"^^xsd:string ; + owl:hasValue "4.2.2.10-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23495 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "NAD+ 1-oxidoreductase"@en , "cpd:C00479 => cpd:C00479"@en , "Propane-1,3-diol"@en , "C05979 + C00003 <=> C00479 + C00004 + C00080"@en ; - sybio:accession "RN:R02377"^^xsd:string ; - sybio:catalyzedBy bo:16945 ; - sybio:catalyzingClass bo:23496 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11660 ; - tawny:name "23495"@en . - bo:29220 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01510"@en ; rdfs:label "BSU01510"@en , "ybaJ"@en ; @@ -10303,6 +10292,17 @@ bo:29220 a sybio:CDS , owl:NamedIndividual ; "10.0"@en ; tawny:name "29220"@en . +bo:23495 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "NAD+ 1-oxidoreductase"@en , "cpd:C00479 => cpd:C00479"@en , "Propane-1,3-diol"@en , "C05979 + C00003 <=> C00479 + C00004 + C00080"@en ; + sybio:accession "RN:R02377"^^xsd:string ; + sybio:catalyzedBy bo:16945 ; + sybio:catalyzingClass bo:23496 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11660 ; + tawny:name "23495"@en . + bo:42 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "ribosomal RNA-16S"@en ; rdfs:label "RrnG-16S"@en , "BSU_rRNA_25"@en ; @@ -10699,11 +10699,11 @@ bo:17512 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GIP"@en , "E5.3.1.22"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008903"^^xsd:string ; + owl:hasValue "COG3622"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3622"^^xsd:string ; + owl:hasValue "0008903"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -11162,11 +11162,11 @@ bo:5558 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "transferase activity, transferring nitrogenous groups"@en , "GO:0016769"@en , "transferase activity transferring other nitrogenous groups"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016769"^^xsd:string ; + owl:hasValue "2.6.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.-.-"^^xsd:string ; + owl:hasValue "GO:0016769"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -11186,11 +11186,11 @@ bo:5646 a sybio:Operon , owl:NamedIndividual ; rdfs:label "racemase and epimerase activity, acting on carbohydrates and derivatives"@en , "GO:0016857"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016857"^^xsd:string ; + owl:hasValue "5.1.3.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.-"^^xsd:string ; + owl:hasValue "GO:0016857"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -11339,6 +11339,18 @@ bo:6299 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yybF"@en ; tawny:name "6299"@en . +bo:25380 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "5.3.3.1"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "5.3.3.1"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25380"@en . + bo:10070 a sybio:Protein , bo:412 , owl:NamedIndividual ; rdfs:comment "Uncharacterized transporter ydeD"@en , "putative permease;BSU05160"@en ; rdfs:label "ydeD"@en , "BSU05160"@en , "YdeD"@en ; @@ -11357,18 +11369,6 @@ bo:10070 a sybio:Protein , bo:412 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10070"@en . -bo:25380 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "5.3.3.1"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.3.1"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25380"@en . - bo:6387 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ydbM"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -11688,16 +11688,6 @@ bo:31378 a owl:NamedIndividual , sybio:CDS ; "11.0"@en ; tawny:name "31378"@en . -bo:27888 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "blt_RBS"@en ; - sybio:NA "TGAGTAAAAGGGGAATTCAG"^^xsd:string ; - sybio:begin "2716953"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2716972"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28934 ; - tawny:name "27888"@en . - bo:12578 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C5H7NO3"@en ; rdfs:label "C5H7NO3"@en , "3-Hydroxy-L-1-pyrroline-5-carboxylate"@en , "L-1-Pyrroline-3-hydroxy-5-carboxylate"@en , "(3R,5S)-1-Pyrroline-3-hydroxy-5-carboxylate"@en ; @@ -11709,6 +11699,16 @@ bo:12578 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C04281"@en ; tawny:name "12578"@en . +bo:27888 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "blt_RBS"@en ; + sybio:NA "TGAGTAAAAGGGGAATTCAG"^^xsd:string ; + sybio:begin "2716953"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2716972"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28934 ; + tawny:name "27888"@en . + bo:31466 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU27620;"@en ; rdfs:label "BSU27620"@en , "yrvE"@en , "recJ"@en ; @@ -12334,16 +12334,6 @@ bo:31429 a sybio:CDS , owl:NamedIndividual ; "8.0"@en ; tawny:name "31429"@en . -bo:27939 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "acuA_RBS_upstream"@en ; - sybio:NA "AGA"^^xsd:string ; - sybio:begin "3040069"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3040071"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27938 ; - tawny:name "27939"@en . - bo:12629 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C5H8N2O4"@en ; rdfs:label "C5H8N2O4"@en , "N-Formimino-L-aspartate"@en , "N-Formimidoyl-L-aspartate"@en ; @@ -12355,17 +12345,27 @@ bo:12629 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03409"@en ; tawny:name "12629"@en . +bo:27939 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "acuA_RBS_upstream"@en ; + sybio:NA "AGA"^^xsd:string ; + sybio:begin "3040069"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3040071"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27938 ; + tawny:name "27939"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: 3-oxopropanoate + CoA + NADP+ = acetyl-CoA + CO2 + NADPH + H+."@en ; rdfs:label "malonate-semialdehyde dehydrogenase (acetylating)"@en , "oxidoreductase"@en , "malonic semialdehyde oxidative decarboxylase"@en , "GO:0018478"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0018478"^^xsd:string ; + owl:hasValue "1.2.1.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.18"^^xsd:string ; + owl:hasValue "GO:0018478"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -12525,11 +12525,11 @@ bo:25306 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0016021"@en , "transmembrane"@en , "integral to membrane"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Transmembrane_protein"^^xsd:string ; + owl:hasValue "GO:0016021"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016021"^^xsd:string ; + owl:hasValue "Transmembrane_protein"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13145,15 +13145,15 @@ bo:14551 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0043715"@en , "mtnW"@en , "DK-MTP-1-P enolase"@en , "MasA"@en , "2,3-diketo-5-methylthiopentyl-1-phosphate enolase"@en , "E-1"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043715"^^xsd:string ; + owl:hasValue "5.3.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.2.-"^^xsd:string ; + owl:hasValue "R82-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R82-RXN"^^xsd:string ; + owl:hasValue "GO:0043715"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13217,6 +13217,17 @@ bo:32309 a owl:NamedIndividual , sybio:CDS ; "37.0"@en ; tawny:name "32309"@en . +bo:13509 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C2H4Cl2"@en ; + rdfs:label "Ethylene dichloride"@en , "C2H4Cl2"@en , "Glycol dichloride"@en , "Dutch liquid"@en , "1,2-Dichloroethane"@en ; + sybio:accession "B01041"^^xsd:string , "8973"^^xsd:string , "107-06-2"^^xsd:string , "C06752"^^xsd:string , "27789"^^xsd:string ; + sybio:consumedBy bo:24184 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24184 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06752"@en ; + tawny:name "13509"@en . + bo:28819 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU26450"@en ; rdfs:label "BSU26450"@en , "yrkN"@en ; @@ -13243,24 +13254,13 @@ bo:28819 a sybio:CDS , owl:NamedIndividual ; "3.0"@en ; tawny:name "28819"@en . -bo:13509 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C2H4Cl2"@en ; - rdfs:label "Ethylene dichloride"@en , "C2H4Cl2"@en , "Glycol dichloride"@en , "Dutch liquid"@en , "1,2-Dichloroethane"@en ; - sybio:accession "B01041"^^xsd:string , "8973"^^xsd:string , "107-06-2"^^xsd:string , "C06752"^^xsd:string , "27789"^^xsd:string ; - sybio:consumedBy bo:24184 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24184 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06752"@en ; - tawny:name "13509"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: N-(5-phospho-D-ribosyl)-anthranilate + diphosphate = anthranilate + 5-phospho-a-D-ribose 1-diphosphate."@en ; rdfs:label "phosphoribosylanthranilate pyrophosphorylase"@en , "phosphoribosyl-anthranilate pyrophosphorylase"@en , "PRT"@en , "phosphoribosylanthranilate transferase"@en , "phospho-alpha-D-ribosyltransferase"@en , "anthranilate phosphoribosyltransferase"@en , "anthranilate-PP-ribose-P phosphoribosyltransferase"@en , "GO:0004048"@en , "anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase"@en , "phosphoribosyl-anthranilate diphosphorylase"@en , "anthranilate phosphoribosylpyrophosphate phosphoribosyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PRTRANS-RXN"^^xsd:string ; + owl:hasValue "2.4.2.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -13268,7 +13268,7 @@ bo:13509 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.18"^^xsd:string ; + owl:hasValue "PRTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13322,11 +13322,11 @@ bo:28907 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DEOXYADENOSINE-KINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.1.76"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.76"^^xsd:string ; + owl:hasValue "DEOXYADENOSINE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13391,7 +13391,7 @@ bo:15292 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "L-histidinol phosphate aminotransferase"@en , "glutamic-imidazoleacetol phosphate transaminase"@en , "histidine:imidazoleacetol phosphate transaminase"@en , "histidinol-phosphate transaminase"@en , "GO:0004400"@en , "imidazolylacetolphosphate aminotransferase"@en , "histidinol phosphate aminotransferase"@en , "L-histidinol-phosphate:2-oxoglutarate aminotransferase"@en , "imidazoleacetol phosphate transaminase"@en , "IAP transaminase"@en , "imidazolylacetolphosphate transaminase"@en , "histidinol-phosphate aminotransferase"@en , "imidazole acetol-phosphate transaminase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004400"^^xsd:string ; + owl:hasValue "HISTAMINOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -13399,7 +13399,7 @@ bo:15292 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HISTAMINOTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0004400"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13840,7 +13840,7 @@ bo:21642 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0008691"@en , "3-hydroxybutyryl-CoA dehydrogenase"@en , "oxidoreductase"@en , "dehydrogenase L-3-hydroxybutyryl coenzyme A"@en , "beta-hydroxybutyryl coenzyme A dehydrogenase"@en , "beta-hydroxybutyryl-CoA dehydrogenase"@en , "dehydrogenase"@en , "BHBD"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.157"^^xsd:string ; + owl:hasValue "GO:0008691"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -13848,7 +13848,7 @@ bo:21642 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008691"^^xsd:string ; + owl:hasValue "1.1.1.157"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -13999,7 +13999,7 @@ bo:2913 a sybio:ConstitutiveSigAPromoter , sybio:SigAProm rdfs:label "GO:0010309"@en , "ARD1"@en , "acireductone dioxygenase [iron(II)-requiring]"@en , "1 oxidoreductase"@en , "E-2'"@en , "ARD'"@en , "aci-reductone dioxygenase"@en , "1 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase"@en , "acireductone dioxygenase"@en , "2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R147-RXN"^^xsd:string ; + owl:hasValue "1.13.11.54"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -14007,7 +14007,7 @@ bo:2913 a sybio:ConstitutiveSigAPromoter , sybio:SigAProm owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.13.11.54"^^xsd:string ; + owl:hasValue "R147-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -14036,16 +14036,6 @@ bo:16261 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04098"@en ; tawny:name "16261"@en . -bo:22295 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "N-carbamyl-L-glutamate amidohydrolase"@en , "cpd:C05829 => cpd:C05829"@en , "C00025 + C00014 + C00011 <=> C05829 + C00001"@en ; - sybio:accession "RN:R00254"^^xsd:string ; - sybio:catalyzingClass bo:22296 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11605 ; - tawny:name "22295"@en . - bo:28020 a owl:NamedIndividual , sybio:Shim ; rdfs:label "ytvI_RBS_upstream"@en ; sybio:NA "GCTG"^^xsd:string ; @@ -14056,6 +14046,16 @@ bo:28020 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28019 ; tawny:name "28020"@en . +bo:22295 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "N-carbamyl-L-glutamate amidohydrolase"@en , "cpd:C05829 => cpd:C05829"@en , "C00025 + C00014 + C00011 <=> C05829 + C00001"@en ; + sybio:accession "RN:R00254"^^xsd:string ; + sybio:catalyzingClass bo:22296 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11605 ; + tawny:name "22295"@en . + bo:9027 a bo:875 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Stage III sporulation protein D"@en , "transcriptional regulator;BSU36420;"@en ; rdfs:label "SpoIIID"@en , "BSU36420"@en , "spoIIID"@en ; @@ -14291,15 +14291,15 @@ bo:21605 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0008654"@en , "phospholipid formation"@en , "phospholipid biosynthetic process"@en , "phospholipid biosynthesis"@en , "phospholipid anabolism"@en , "phospholipid synthesis"@en ; rdfs:subClassOf , , sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSLIPSYN-PWY"^^xsd:string ; + owl:hasValue "LIPASYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "LIPASYN-PWY"^^xsd:string ; + owl:hasValue "PHOSLIPSYN2-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSLIPSYN2-PWY"^^xsd:string ; + owl:hasValue "PHOSLIPSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -14314,15 +14314,15 @@ bo:18769 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "B3GNT1"@en , "B3GNT2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "GT49"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008532"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT49"^^xsd:string ; + owl:hasValue "0008532"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -14361,11 +14361,11 @@ bo:18857 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008742"^^xsd:string ; + owl:hasValue "RIBULPEPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBULPEPIM-RXN"^^xsd:string ; + owl:hasValue "GO:0008742"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -14387,11 +14387,11 @@ bo:18945 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "TDP-4-ketorhamnose 3 5-epimerase"@en , "thymidine diphospho-4-ketorhamnose 3 5-epimerase"@en , "GO:0008830"@en , "dTDP-4-dehydrorhamnose 3,5-epimerase"@en , "dTDP-4-keto-6-deoxyglucose 3 5-epimerase"@en , "TDP-4-keto-L-rhamnose-3 5-epimerase"@en , "dTDP-L-rhamnose synthetase"@en , "dTDP-4-dehydro-6-deoxy-D-glucose 3 5-epimerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DTDPDEHYDRHAMEPIM-RXN"^^xsd:string ; + owl:hasValue "5.1.3.13"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.13"^^xsd:string ; + owl:hasValue "DTDPDEHYDRHAMEPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -14453,16 +14453,6 @@ bo:4483 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "rapC,phrC"@en ; tawny:name "4483"@en . -bo:16224 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "4-carboxymuconolactone decarboxylase [EC:4.1.1.44]"@en ; - rdfs:label "E4.1.1.44"@en , "PCAC"@en ; - sybio:accession "COG0599"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16223 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01607"@en ; - tawny:name "16224"@en . - bo:4571 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "phoB-ydhF_terminator"@en ; sybio:NA "ATCAAGAACTCCCGTACAAGGTACGGGAGTTCTTTTTCTTATTTGTT"^^xsd:string ; @@ -14475,6 +14465,16 @@ bo:4571 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4570 ; tawny:name "4571"@en . +bo:16224 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "4-carboxymuconolactone decarboxylase [EC:4.1.1.44]"@en ; + rdfs:label "E4.1.1.44"@en , "PCAC"@en ; + sybio:accession "COG0599"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16223 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01607"@en ; + tawny:name "16224"@en . + bo:16312 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "kynurenine 3-monooxygenase [EC:1.14.13.9]"@en ; rdfs:label "E1.14.13.9"@en ; @@ -14702,6 +14702,16 @@ bo:10498 a owl:NamedIndividual , sybio:Protein , bo:1275 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10498"@en . +bo:25896 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "C05194 + C00005 + C00080 + C00007 <=> C05193 + C00006 + C00001"@en , "oxygen oxidoreductase (12-hydroxylating)"@en , "cpd:C05194 <=> cpd:C05194"@en , "Dihydrochelirubine,NADPH"@en ; + sybio:accession "RN:R04708"^^xsd:string ; + sybio:catalyzingClass bo:25897 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25896"@en . + bo:10586 a bo:575 , owl:NamedIndividual , bo:414 , sybio:Protein ; rdfs:comment "BacD;Malonyl-CoA transacylase;Alanine-anticapsin ligase bacD;"@en , "BSU37710;alanine-anticapsin ligase"@en ; rdfs:label "BacD"@en , "BSU37710"@en , "YwfE"@en , "bacD"@en , "Ipa-83d"@en ; @@ -14719,15 +14729,14 @@ bo:10586 a bo:575 , owl:NamedIndividual , bo:414 , sybio:P sybio:taxId "224308"@en ; tawny:name "10586"@en . -bo:25896 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "C05194 + C00005 + C00080 + C00007 <=> C05193 + C00006 + C00001"@en , "oxygen oxidoreductase (12-hydroxylating)"@en , "cpd:C05194 <=> cpd:C05194"@en , "Dihydrochelirubine,NADPH"@en ; - sybio:accession "RN:R04708"^^xsd:string ; - sybio:catalyzingClass bo:25897 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25896"@en . +bo:25984 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "unclear reaction - reversible"@en ; + rdfs:label " <=> "@en , "C11887 <=> C06087"@en ; + sybio:accession "RN:R06357"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25984"@en . bo:10674 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU40259;hypothetical protein"@en , "Uncharacterized membrane protein yyzG"@en ; @@ -14745,15 +14754,6 @@ bo:10674 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10674"@en . -bo:25984 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "unclear reaction - reversible"@en ; - rdfs:label " <=> "@en , "C11887 <=> C06087"@en ; - sybio:accession "RN:R06357"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25984"@en . - bo:17053 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "inositol-polyphosphate multikinase [EC:2.7.1.151]"@en ; rdfs:label "IPMK"@en , "E2.7.1.151"@en ; @@ -15067,7 +15067,7 @@ bo:24092 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:label "beta-acetoacetyl coenzyme A thiolase"@en , "acetoacetyl-CoA thiolase"@en , "thiolase II"@en , "acetyl-CoA acetyltransferase"@en , "acetyl-CoA C-acetyltransferase"@en , "3-oxothiolase"@en , "2-methylacetoacetyl-CoA thiolase"@en , "acetyl coenzyme A thiolase"@en , "acetyl-CoA:acetyl-CoA C-acetyltransferase"@en , "GO:0003985"@en , "acetyl-CoA:N-acetyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0144"^^xsd:string ; + owl:hasValue "2.3.1.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -15079,7 +15079,7 @@ bo:24092 a owl:Class , owl:NamedIndividual , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.9"^^xsd:string ; + owl:hasValue "e0144"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -15476,6 +15476,22 @@ bo:30178 a sybio:CDS , owl:NamedIndividual ; "29.0"@en ; tawny:name "30178"@en . +bo:26688 a owl:NamedIndividual , bo:1758 , sybio:Protein ; + rdfs:comment "Uncharacterized acetyltransferase yvcN;derived protein"@en , "putative acetyltransferase;BSU34730"@en ; + rdfs:label "YvcN"@en , "yvcN"@en , "BSU34730"@en ; + sybio:AA "VIKMSDFLKDCFQKIGWEKDHVSFGDLPLFLKAMAYRFPFENRAVLAKENYKITKEELWRRLLKDQHGGLCYDLNGFLYFVLREAGFHVKLIRGTVYAGDQEGWALEGTHAAVWLSAENGDYLVDIGFGINLALQPIPLSGETVQSPVGSFRIKKEETEKGSYVLLMDKGEGWQIGYAFTLEESDLGDLDNMKDIIHSHEKSPFNKSLLASKLTPSGRMVMSERHFTIYENGGNIQKSDIGPSGFEEKLNTHFL"@en ; + sybio:accession "936525"^^xsd:string , "16080526"^^xsd:string , "O06977"^^xsd:string , "BSU34730"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32961 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "28792.685"^^xsd:string ; + sybio:pI "5.657433"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26688"@en . + bo:11378 a owl:NamedIndividual , sybio:Protein , bo:373 ; rdfs:comment "putative iron-siderophore ABC transporter (binding lipoprotein);BSU03830;"@en , "Uncharacterized ABC transporter solute-binding protein yclQ"@en ; rdfs:label "BSU03830"@en , "yclQ"@en , "YclQ"@en ; @@ -15496,22 +15512,6 @@ bo:11378 a owl:NamedIndividual , sybio:Protein , bo:373 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11378"@en . -bo:26688 a owl:NamedIndividual , bo:1758 , sybio:Protein ; - rdfs:comment "Uncharacterized acetyltransferase yvcN;derived protein"@en , "putative acetyltransferase;BSU34730"@en ; - rdfs:label "YvcN"@en , "yvcN"@en , "BSU34730"@en ; - sybio:AA "VIKMSDFLKDCFQKIGWEKDHVSFGDLPLFLKAMAYRFPFENRAVLAKENYKITKEELWRRLLKDQHGGLCYDLNGFLYFVLREAGFHVKLIRGTVYAGDQEGWALEGTHAAVWLSAENGDYLVDIGFGINLALQPIPLSGETVQSPVGSFRIKKEETEKGSYVLLMDKGEGWQIGYAFTLEESDLGDLDNMKDIIHSHEKSPFNKSLLASKLTPSGRMVMSERHFTIYENGGNIQKSDIGPSGFEEKLNTHFL"@en ; - sybio:accession "936525"^^xsd:string , "16080526"^^xsd:string , "O06977"^^xsd:string , "BSU34730"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32961 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "28792.685"^^xsd:string ; - sybio:pI "5.657433"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26688"@en . - bo:30266 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU26440;"@en ; rdfs:label "BSU26440"@en , "yrkO"@en ; @@ -15537,6 +15537,25 @@ bo:30266 a sybio:CDS , owl:NamedIndividual ; "6.0"@en ; tawny:name "30266"@en . +bo:26776 a bo:646 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Putative mannose-6-phosphate isomerase yvyI;;derived protein"@en , "putative phosphohexomutase ; cupin family;BSU35790"@en ; + rdfs:label "YvyI"@en , "BSU35790"@en , "yvyI"@en ; + sybio:AA "MTQSPIFLTPVFKEKIWGGTALRDRFGYSIPSESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGGVEGDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYFSVYKWDINGEAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMPDFTIKGTCTLIVSHI"@en ; + sybio:accession "16080632"^^xsd:string , "P39841"^^xsd:string , "BSU35790"^^xsd:string , "936815"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32976 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:interactsWith bo:26293 , bo:26959 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "35426.715"^^xsd:string ; + sybio:pI "5.149223"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26776"@en . + bo:11466 a bo:385 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "ribosomal protein S18 alanine N-acetyltransferase;BSU05930"@en , "Putative ribosomal-protein-alanine acetyltransferase"@en ; rdfs:label "RimI"@en , "rimI"@en , "BSU05930"@en , "YdiD"@en ; @@ -15557,25 +15576,6 @@ bo:11466 a bo:385 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11466"@en . -bo:26776 a bo:646 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Putative mannose-6-phosphate isomerase yvyI;;derived protein"@en , "putative phosphohexomutase ; cupin family;BSU35790"@en ; - rdfs:label "YvyI"@en , "BSU35790"@en , "yvyI"@en ; - sybio:AA "MTQSPIFLTPVFKEKIWGGTALRDRFGYSIPSESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGGVEGDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYFSVYKWDINGEAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMPDFTIKGTCTLIVSHI"@en ; - sybio:accession "16080632"^^xsd:string , "P39841"^^xsd:string , "BSU35790"^^xsd:string , "936815"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32976 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:interactsWith bo:26293 , bo:26959 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "35426.715"^^xsd:string ; - sybio:pI "5.149223"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26776"@en . - bo:6192 a owl:NamedIndividual , sybio:Operon ; rdfs:label "hut"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -15609,17 +15609,6 @@ bo:30354 a sybio:CDS , owl:NamedIndividual ; "6.0"@en ; tawny:name "30354"@en . -bo:11554 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00040"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00040"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11554"@en . - bo:26864 a bo:509 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Aryl-phospho-beta-D-glucosidase bglA;;derived protein"@en , "aryl-6-phospho-beta-glucosidase;BSU40110"@en ; rdfs:label "BglA"@en , "BSU40110"@en , "bglA"@en ; @@ -15638,6 +15627,17 @@ bo:26864 a bo:509 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26864"@en . +bo:11554 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00040"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00040"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11554"@en . + bo:6280 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yycD_terminator"@en ; sybio:NA "GAAAGCCTTCGCTGCAGCGAGGGTTTTTTAGCGGTTAT"^^xsd:string ; @@ -16278,11 +16278,11 @@ bo:9793 a owl:NamedIndividual , bo:465 , sybio:Protein ; rdfs:label "prophase chromosome"@en , "chromatid"@en , "chromosome"@en , "interphase chromosome"@en , "GO:0005694"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005694"^^xsd:string ; + owl:hasValue "Chromosome"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Chromosome"^^xsd:string ; + owl:hasValue "GO:0005694"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -16540,16 +16540,6 @@ bo:31410 a owl:NamedIndividual , sybio:CDS ; "401.0"@en ; tawny:name "31410"@en . -bo:27920 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "comQ_RBS"@en ; - sybio:NA "CTGTCCGGATCAAGGAGAAA"^^xsd:string ; - sybio:begin "3256927"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3256908"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:29038 ; - tawny:name "27920"@en . - bo:12610 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C6H6N2O2"@en ; rdfs:label "C6H6N2O2"@en , "Urocanate"@en , "Urocanic acid"@en ; @@ -16561,25 +16551,35 @@ bo:12610 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00785"@en ; tawny:name "12610"@en . +bo:27920 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "comQ_RBS"@en ; + sybio:NA "CTGTCCGGATCAAGGAGAAA"^^xsd:string ; + sybio:begin "3256927"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3256908"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:29038 ; + tawny:name "27920"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser)."@en ; rdfs:label "seryl-tRNA synthetase"@en , "SerRS"@en , "seryl-transfer RNA synthetase"@en , "serine translase"@en , "GO:0004828"@en , "L-serine:tRNASer ligase"@en , "seryl-transfer ribonucleate synthetase"@en , "seryl-transfer ribonucleic acid synthetase"@en , "serine-tRNA ligase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004828"^^xsd:string ; + owl:hasValue "15110 \"serine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15110 \"serine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "SERINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.11"^^xsd:string ; + owl:hasValue "GO:0004828"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SERINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "6.1.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -17120,19 +17120,6 @@ bo:16689 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10807+K10808"@en ; tawny:name "16689"@en . -bo:16777 a owl:Class , sybio:KOEN , owl:NamedIndividual ; - rdfs:comment "UDP-glucose 4,6-dehydratase [EC:4.2.1.76]"@en ; - rdfs:label "RHM"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050377"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12450"@en ; - tawny:name "16777"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.;"@en ; @@ -17145,15 +17132,18 @@ bo:16777 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16865 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]"@en ; - rdfs:label "NANE"@en ; - sybio:accession "0047465"^^xsd:string ; +bo:16777 a owl:Class , sybio:KOEN , owl:NamedIndividual ; + rdfs:comment "UDP-glucose 4,6-dehydratase [EC:4.2.1.76]"@en ; + rdfs:label "RHM"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0050377"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16866 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01788"@en ; - tawny:name "16865"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12450"@en ; + tawny:name "16777"@en . a owl:Class ; @@ -17161,11 +17151,11 @@ bo:16865 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "glutathione anabolism"@en , "GO:0006750"@en , "glutathione biosynthetic process"@en , "glutathione formation"@en , "glutathione biosynthesis"@en , "glutathione synthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526613 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "487918 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536783 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "174403 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -17173,11 +17163,11 @@ bo:16865 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568699 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "552441 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507890 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "536783 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -17185,23 +17175,23 @@ bo:16865 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547869 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "449125 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "174403 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "526613 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470235 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "531412 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487918 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "595527 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552441 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "581901 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -17209,7 +17199,7 @@ bo:16865 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592799 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "GLUTATHIONESYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -17217,28 +17207,38 @@ bo:16865 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581901 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "592799 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTATHIONESYN-PWY"^^xsd:string ; + owl:hasValue "470235 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595527 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "547869 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531412 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "507890 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449125 \"Glutathione synthesis\""^^xsd:string ; + owl:hasValue "568699 \"Glutathione synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16865 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]"@en ; + rdfs:label "NANE"@en ; + sybio:accession "0047465"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16866 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01788"@en ; + tawny:name "16865"@en . + bo:28448 a owl:NamedIndividual , sybio:RBS ; rdfs:label "des_RBS"@en ; sybio:NA "ACAATGAGAGGATACTTACT"^^xsd:string ; @@ -17943,6 +17943,18 @@ bo:16828 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01787"@en ; tawny:name "16828"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species."@en ; + rdfs:label "superoxide metabolic process"@en , "oxygen free radical metabolic process"@en , "superoxide free radical metabolism"@en , "superoxide free radical metabolic process"@en , "oxygen free radical metabolism"@en , "superoxide metabolism"@en , "GO:0006801"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006801"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:21183 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.6.1.42"@en ; @@ -17965,29 +17977,17 @@ bo:16916 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05362"@en ; tawny:name "16916"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species."@en ; - rdfs:label "superoxide metabolic process"@en , "oxygen free radical metabolic process"@en , "superoxide free radical metabolism"@en , "superoxide free radical metabolic process"@en , "oxygen free radical metabolism"@en , "superoxide metabolism"@en , "GO:0006801"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006801"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP."@en ; rdfs:label "GO:0046857"@en , "oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046857"^^xsd:string ; + owl:hasValue "1.7.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.7.1.-"^^xsd:string ; + owl:hasValue "GO:0046857"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -19253,6 +19253,29 @@ bo:19542 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19542"@en . +bo:19630 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from gene annotation"@en ; + rdfs:label "1.1.1.158"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.158"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "19630"@en . + +bo:25488 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "Phosphatidylcholine 2-acylhydrolase"@en , "cpd:C01595 <=> cpd:C01595"@en , "C00157 + C00001 <=> C04230 + C01595"@en ; + sybio:accession "RN:R07064"^^xsd:string ; + sybio:catalyzedBy bo:17098 ; + sybio:catalyzingClass bo:23640 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25488"@en . + bo:10178 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "endo-1,4-beta-xylanase;BSU18840;"@en , "Endo-1,4-beta-xylanase;Endo-1,4-beta-xylanase A"@en ; rdfs:label "BSU18840"@en , "XynA"@en , "xynA"@en ; @@ -19271,28 +19294,17 @@ bo:10178 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "10178"@en . -bo:19630 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from gene annotation"@en ; - rdfs:label "1.1.1.158"@en ; +bo:25576 a owl:Class , sybio:EC , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.132"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.158"^^xsd:string ; + owl:hasValue "2.4.1.132"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "19630"@en . - -bo:25488 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "Phosphatidylcholine 2-acylhydrolase"@en , "cpd:C01595 <=> cpd:C01595"@en , "C00157 + C00001 <=> C04230 + C01595"@en ; - sybio:accession "RN:R07064"^^xsd:string ; - sybio:catalyzedBy bo:17098 ; - sybio:catalyzingClass bo:23640 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25488"@en . + tawny:name "25576"@en . bo:10266 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU22990;"@en , "Uncharacterized protein ypbF"@en ; @@ -19310,17 +19322,16 @@ bo:10266 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10266"@en . -bo:25576 a owl:Class , sybio:EC , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.132"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.132"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25576"@en . +bo:25664 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G00155 <=> gl:G00155"@en , "G10609 + G00155 <=> G10619 + G00156"@en ; + sybio:accession "RN:R05927"^^xsd:string ; + sybio:catalyzedBy bo:18997 ; + sybio:catalyzingClass bo:25665 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25664"@en . bo:10354 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU27240"@en , "Uncharacterized protein yrhC;"@en ; @@ -19339,17 +19350,6 @@ bo:10354 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10354"@en . -bo:25664 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G00155 <=> gl:G00155"@en , "G10609 + G00155 <=> G10619 + G00156"@en ; - sybio:accession "RN:R05927"^^xsd:string ; - sybio:catalyzedBy bo:18997 ; - sybio:catalyzingClass bo:25665 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25664"@en . - bo:5080 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ymaG_terminator"@en ; sybio:NA "TTATTATTAAACGCAAAAGACCCCTTAAAAAGGGGTCTTTTTAAGTGTGTGA"^^xsd:string ; @@ -19620,25 +19620,6 @@ bo:11095 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "11095"@en . -bo:11183 a sybio:Protein , owl:NamedIndividual , bo:457 ; - rdfs:comment "putative permease for export of a regulatory peptide;BSU40140;"@en , "Probable peptide export permease protein yydJ"@en ; - rdfs:label "YydJ"@en , "BSU40140"@en , "yydJ"@en ; - sybio:AA "MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLMLFSFVIAFFINREYSNKNILFYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYHDFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVSIVYWMTSVILVAISNKTFGFIAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL"@en ; - sybio:accession "Q45592"^^xsd:string , "BSU40140"^^xsd:string ; - sybio:biologicalProcess "16.4 : Excrete"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31923 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:9246 , bo:9245 , bo:11019 , bo:11397 , bo:9148 ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "27504.215"^^xsd:string ; - sybio:pI "9.281868"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:relatedTo bo:11184 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11183"@en . - bo:26493 a bo:1247 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "putative acyl-CoA carboxylase;BSU23920"@en , "Putative propionyl-CoA carboxylase beta chain;derived protein"@en ; rdfs:label "BSU23920"@en , "yqjD"@en , "YqjD"@en ; @@ -19660,13 +19641,32 @@ bo:26493 a bo:1247 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26493"@en . +bo:11183 a sybio:Protein , owl:NamedIndividual , bo:457 ; + rdfs:comment "putative permease for export of a regulatory peptide;BSU40140;"@en , "Probable peptide export permease protein yydJ"@en ; + rdfs:label "YydJ"@en , "BSU40140"@en , "yydJ"@en ; + sybio:AA "MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLMLFSFVIAFFINREYSNKNILFYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYHDFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVSIVYWMTSVILVAISNKTFGFIAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL"@en ; + sybio:accession "Q45592"^^xsd:string , "BSU40140"^^xsd:string ; + sybio:biologicalProcess "16.4 : Excrete"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31923 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:9246 , bo:9245 , bo:11019 , bo:11397 , bo:9148 ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "27504.215"^^xsd:string ; + sybio:pI "9.281868"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:relatedTo bo:11184 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11183"@en . + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + undecaprenol = ADP + undecaprenyl phosphate."@en ; rdfs:label "C55-isoprenoid alcohol kinase"@en , "polyisoprenol kinase"@en , "C55-isoprenyl alcohol phosphokinase"@en , "GO:0009038"@en , "C55-isoprenoid alcohol phosphokinase"@en , "isoprenoid alcohol phosphokinase"@en , "isoprenoid alcohol kinase"@en , "isoprenoid-alcohol kinase"@en , "ATP:undecaprenol phosphotransferase"@en , "undecaprenol kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.66"^^xsd:string ; + owl:hasValue "GO:0009038"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -19674,7 +19674,7 @@ bo:26493 a bo:1247 , sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009038"^^xsd:string ; + owl:hasValue "2.7.1.66"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -19705,6 +19705,26 @@ bo:30071 a owl:NamedIndividual , sybio:CDS ; "0.0"@en ; tawny:name "30071"@en . +bo:26581 a sybio:Protein , owl:NamedIndividual , bo:796 ; + rdfs:comment "glycolate oxidase subunit;BSU28680"@en , "derived protein;Glycolate oxidase subunit glcD"@en ; + rdfs:label "GlcD"@en , "BSU28680"@en , "glcD"@en , "YsfC"@en ; + sybio:AA "MITKDVKEQLIQVSGPENFDDSNAGRLVYSYDATPQYQSMPDAVIAPRNTDEISRILTICSEHRVPIVPRGSGTNLCGGTCPTEGGLVLLFKHMNQILEIDEENLTATVQPGVITLDMIRAVESKGLFYPPDPSSMKISTIGGNINENSGGLRGLKYGVTRDYVIGLEVVLANGDIIRTGGKLAKDVAGYDLTRLFVGSEGTLGIVTEAIVKLVPKPETKKTLLALYENIDAAAQTVSDIIAAKIIPATLEFLDQPTLLVIEDYAKIGLPTSAKAVLLIEQDGPFETVERDMEKIEAICKKGDAVSVQTAQTEEEAFALTEARRSALSALARLKPTTILEDATVPRSEIANMVKAINDIAAKYDISICTFGHAGDGNLHPTCTTDIRNKDEMERVEQAFAEIFEKAIELGGTITGEHGVGEMKAPYLEMKLKKEGIDAMKALKAAFDPRNILNPGKMFAKDARKRVVAER"@en ; + sybio:accession "16079920"^^xsd:string , "BSU28680"^^xsd:string , "P94535"^^xsd:string , "937770"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32916 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "50934.495"^^xsd:string ; + sybio:pI "5.048393"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26582 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26581"@en . + bo:11271 a bo:317 , bo:316 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "elongation factor G;BSU01120"@en , "Elongation factor G"@en ; rdfs:label "fus"@en , "Fus"@en , "fusA"@en , "FusA"@en , "BSU01120"@en ; @@ -19726,26 +19746,6 @@ bo:11271 a bo:317 , bo:316 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "11271"@en . -bo:26581 a sybio:Protein , owl:NamedIndividual , bo:796 ; - rdfs:comment "glycolate oxidase subunit;BSU28680"@en , "derived protein;Glycolate oxidase subunit glcD"@en ; - rdfs:label "GlcD"@en , "BSU28680"@en , "glcD"@en , "YsfC"@en ; - sybio:AA "MITKDVKEQLIQVSGPENFDDSNAGRLVYSYDATPQYQSMPDAVIAPRNTDEISRILTICSEHRVPIVPRGSGTNLCGGTCPTEGGLVLLFKHMNQILEIDEENLTATVQPGVITLDMIRAVESKGLFYPPDPSSMKISTIGGNINENSGGLRGLKYGVTRDYVIGLEVVLANGDIIRTGGKLAKDVAGYDLTRLFVGSEGTLGIVTEAIVKLVPKPETKKTLLALYENIDAAAQTVSDIIAAKIIPATLEFLDQPTLLVIEDYAKIGLPTSAKAVLLIEQDGPFETVERDMEKIEAICKKGDAVSVQTAQTEEEAFALTEARRSALSALARLKPTTILEDATVPRSEIANMVKAINDIAAKYDISICTFGHAGDGNLHPTCTTDIRNKDEMERVEQAFAEIFEKAIELGGTITGEHGVGEMKAPYLEMKLKKEGIDAMKALKAAFDPRNILNPGKMFAKDARKRVVAER"@en ; - sybio:accession "16079920"^^xsd:string , "BSU28680"^^xsd:string , "P94535"^^xsd:string , "937770"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32916 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "50934.495"^^xsd:string ; - sybio:pI "5.048393"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26582 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26581"@en . - bo:8 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "small cytoplasmic RNA (scRNA, 4.5S RNA), signal recognition particle-like (SRP) component"@en ; rdfs:label "Scr"@en , "BSU_misc_RNA_2"@en ; @@ -19760,15 +19760,15 @@ bo:8 a sybio:RNA , owl:NamedIndividual ; rdfs:label "4-hydroxybenzoate decarboxylase"@en , "4-hydroxybenzoate carboxy-lyase"@en , "p-hydroxybenzoate decarboxylase"@en , "GO:0018799"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.61"^^xsd:string ; + owl:hasValue "e0138"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0138"^^xsd:string ; + owl:hasValue "GO:0018799"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0018799"^^xsd:string ; + owl:hasValue "4.1.1.61"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -19870,15 +19870,15 @@ bo:19505 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "1-acyl-sn-glycerol-3-phosphate acyltransferase"@en , "lysophosphatidic acid-acyltransferase"@en , "1-acyl-sn-glycero-3-phosphate acyltransferase"@en , "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"@en , "1-acyl-sn-glycerol 3-phosphate acyltransferase"@en , "1-acylglycerophosphate acyltransferase"@en , "1-acylglycerolphosphate acyltransferase"@en , "1-acylglycerol-3-phosphate O-acyltransferase"@en , "1-acylglycero-3-phosphate acyltransferase"@en , "GO:0003841"@en , "lysophosphatidate acyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.51"^^xsd:string ; + owl:hasValue "GO:0003841"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003841"^^xsd:string ; + owl:hasValue "GO:0004469"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004469"^^xsd:string ; + owl:hasValue "2.3.1.51"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -20169,6 +20169,26 @@ bo:32931 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu30290"@en ; tawny:name "32931"@en . +bo:26368 a bo:1193 , sybio:Protein , bo:902 , owl:NamedIndividual ; + rdfs:comment "derived protein;Aspartate-semialdehyde dehydrogenase"@en , "aspartate-semialdehyde dehydrogenase;BSU16750"@en ; + rdfs:label "asd"@en , "Asd"@en , "BSU16750"@en ; + sybio:AA "MGRGLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESFEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVRLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFVGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV"@en ; + sybio:accession "16078738"^^xsd:string , "BSU16750"^^xsd:string , "Q04797"^^xsd:string , "939654"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:33005 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "37845.495"^^xsd:string ; + sybio:pI "5.143562"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26576 , bo:26369 , bo:26453 , bo:26719 , bo:26370 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26368"@en . + bo:11058 a bo:353 , bo:1774 , bo:632 , bo:356 , bo:633 , bo:1775 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU35160;excinuclease ABC (subunit A)"@en , "UvrABC system protein A"@en ; rdfs:label "BSU35160"@en , "uvrA"@en , "UvrA"@en ; @@ -20190,26 +20210,6 @@ bo:11058 a bo:353 , bo:1774 , bo:632 , bo:356 , bo:633 , b sybio:taxId "[224308, 1423]"@en ; tawny:name "11058"@en . -bo:26368 a bo:1193 , sybio:Protein , bo:902 , owl:NamedIndividual ; - rdfs:comment "derived protein;Aspartate-semialdehyde dehydrogenase"@en , "aspartate-semialdehyde dehydrogenase;BSU16750"@en ; - rdfs:label "asd"@en , "Asd"@en , "BSU16750"@en ; - sybio:AA "MGRGLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESFEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVRLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFVGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV"@en ; - sybio:accession "16078738"^^xsd:string , "BSU16750"^^xsd:string , "Q04797"^^xsd:string , "939654"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:33005 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "37845.495"^^xsd:string ; - sybio:pI "5.143562"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26576 , bo:26369 , bo:26453 , bo:26719 , bo:26370 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26368"@en . - bo:26456 a sybio:Protein , bo:617 , owl:NamedIndividual ; rdfs:comment "BSU22620;histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase"@en , "Histidinol-phosphate aminotransferase;derived protein"@en ; rdfs:label "HisC"@en , "BSU22620"@en , "hisC"@en , "AroJ"@en ; @@ -20617,7 +20617,7 @@ bo:32806 a sybio:CDS , owl:NamedIndividual ; rdfs:label "4-phosphopantothenoyl-L-cysteine decarboxylase"@en , "phosphopantothenoylcysteine decarboxylase"@en , "4-phosphopantotheoylcysteine decarboxylase"@en , "PPC-decarboxylase"@en , "carboxy-lyase"@en , "GO:0004633"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.36"^^xsd:string ; + owl:hasValue "GO:0004633"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -20625,11 +20625,11 @@ bo:32806 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004633"^^xsd:string ; + owl:hasValue "13382 \"phosphopantothenoylcysteine decarboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13382 \"phosphopantothenoylcysteine decarboxylase activity\""^^xsd:string ; + owl:hasValue "4.1.1.36"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -20640,10 +20640,6 @@ bo:32806 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity."@en ; rdfs:label "phosphoprotein phosphatase"@en , "protein phosphatase"@en , "protein phosphatase-1"@en , "protein phosphatase-2A"@en , "phosphoprotein phosphohydrolase"@en , "protein phosphatase-2C"@en , "GO:0004721"@en , "protein phosphatase-2B"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.16"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "1887 \"phosphoprotein phosphatase activity\""^^xsd:string ; owl:onProperty sybio:accession @@ -20656,6 +20652,10 @@ bo:32806 a sybio:CDS , owl:NamedIndividual ; owl:hasValue "GO:0004721"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.1.3.16"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -21221,18 +21221,6 @@ bo:9348 a bo:1147 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9348"@en . - - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; - rdfs:comment "Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel."@en ; - rdfs:label "voltage-dependent potassium channel"@en , "GO:0005249"@en , "voltage-sensitive potassium channel"@en , "voltage-gated potassium ion channel"@en , "voltage-gated potassium channel"@en , "voltage gated potassium channel"@en ; - rdfs:subClassOf sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005249"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:9436 a sybio:Protein , bo:1242 , owl:NamedIndividual ; rdfs:comment "Glucuronoxylanase xynC"@en , "BSU18150;endo-xylanase"@en ; rdfs:label "XynC"@en , "BSU18150"@en , "YnfF"@en , "xynC"@en ; @@ -21265,6 +21253,18 @@ bo:22792 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22792"@en . + + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; + rdfs:comment "Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel."@en ; + rdfs:label "voltage-dependent potassium channel"@en , "GO:0005249"@en , "voltage-sensitive potassium channel"@en , "voltage-gated potassium ion channel"@en , "voltage-gated potassium channel"@en , "voltage gated potassium channel"@en ; + rdfs:subClassOf sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0005249"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:3799 a sybio:NegativelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; rdfs:comment "Negative"@en ; rdfs:label "Fur_yusV"@en ; @@ -21425,11 +21425,11 @@ bo:1078 a owl:Class ; rdfs:label "sporulation resulting in formation of a cellular spore"@en , "GO:0030435"@en , "spore biosynthesis"@en , "cellular spore formation by sporulation"@en , "spore differentiation"@en , "spore formation"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Sporogenesis"^^xsd:string ; + owl:hasValue "GO:0030435"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030435"^^xsd:string ; + owl:hasValue "Sporogenesis"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -21464,11 +21464,11 @@ bo:21838 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0008887"@en , "D-glycerate 3-kinase"@en , "D-glyceric acid kinase"@en , "3-phosphotransferase"@en , "ATP:D-glycerate 2-phosphotransferase"@en , "GK"@en , "glycerate-3-kinase"@en , "glycerate kinase"@en , "D-glycerate kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008887"^^xsd:string ; + owl:hasValue "2.7.1.31"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.31"^^xsd:string ; + owl:hasValue "GO:0008887"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -21611,11 +21611,11 @@ bo:15715 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.5.1.10"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1748"^^xsd:string ; + owl:hasValue "0004755"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004755"^^xsd:string ; + owl:hasValue "COG1748"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -21642,16 +21642,6 @@ bo:15803 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433"@en ; tawny:name "15803"@en . -bo:16457 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "clorobiocin biosynthesis protein CloU"@en ; - rdfs:label "CLOU"@en ; - sybio:accession "Q8GHA8"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16458 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12716"@en ; - tawny:name "16457"@en . - a owl:Class ; rdfs:comment "Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin."@en ; @@ -21668,6 +21658,16 @@ bo:16457 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16457 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "clorobiocin biosynthesis protein CloU"@en ; + rdfs:label "CLOU"@en ; + sybio:accession "Q8GHA8"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16458 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12716"@en ; + tawny:name "16457"@en . + bo:4892 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yjbF"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -21676,16 +21676,6 @@ bo:4892 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yjbF"@en ; tawny:name "4892"@en . -bo:16545 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "aldehyde dehydrogenase"@en ; - rdfs:label "PHPJ"@en ; - sybio:accession "Q5IW32"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16544 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12907"@en ; - tawny:name "16545"@en . - a owl:Class ; rdfs:comment "The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; @@ -21698,6 +21688,16 @@ bo:16545 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16545 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "aldehyde dehydrogenase"@en ; + rdfs:label "PHPJ"@en ; + sybio:accession "Q5IW32"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16544 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12907"@en ; + tawny:name "16545"@en . + bo:28128 a sybio:RBS , owl:NamedIndividual ; rdfs:label "splB_RBS"@en ; sybio:NA "AAGGAAAAGGATGTGGCATC"^^xsd:string ; @@ -21708,6 +21708,24 @@ bo:28128 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31380 ; tawny:name "28128"@en . +bo:4980 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "kinA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28900 ; + sybio:operonGenes "kinA"@en ; + tawny:name "4980"@en . + +bo:28216 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "hrcA_RBS"@en ; + sybio:NA "CAGAGGTGATGATG"^^xsd:string ; + sybio:begin "2629651"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2629638"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31808 ; + tawny:name "28216"@en . + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the endohydrolysis of 1,4-beta-D-xylosidic linkages in xylans."@en ; @@ -21718,11 +21736,11 @@ bo:28128 a sybio:RBS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.8-RXN"^^xsd:string ; + owl:hasValue "GO:0031176"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031176"^^xsd:string ; + owl:hasValue "3.2.1.8-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -21733,11 +21751,11 @@ bo:16633 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E3.5.1.38"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050417"^^xsd:string ; + owl:hasValue "COG0252"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0252"^^xsd:string ; + owl:hasValue "0050417"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -21745,24 +21763,6 @@ bo:16633 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05597"@en ; tawny:name "16633"@en . -bo:4980 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "kinA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28900 ; - sybio:operonGenes "kinA"@en ; - tawny:name "4980"@en . - -bo:28216 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "hrcA_RBS"@en ; - sybio:NA "CAGAGGTGATGATG"^^xsd:string ; - sybio:begin "2629651"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2629638"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31808 ; - tawny:name "28216"@en . - bo:16721 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "glucan endo-1,3-beta-D-glucosidase [EC:3.2.1.39]"@en ; rdfs:label "E3.2.1.39"@en ; @@ -21988,11 +21988,11 @@ bo:17374 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.1.99.16"@en , "MQO"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0579"^^xsd:string ; + owl:hasValue "0008924"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008924"^^xsd:string ; + owl:hasValue "COG0579"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -22031,17 +22031,6 @@ bo:17462 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11945"@en ; tawny:name "17462"@en . -bo:573 a owl:Class ; - rdfs:label "COG1960"@en ; - rdfs:subClassOf bo:233 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1960"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "573"@en . - bo:29045 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32010;"@en ; rdfs:label "BSU32010"@en , "besA"@en , "yuiI"@en ; @@ -22081,6 +22070,17 @@ bo:1305 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1305"@en . +bo:573 a owl:Class ; + rdfs:label "COG1960"@en ; + rdfs:subClassOf bo:233 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1960"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "573"@en . + bo:17550 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "malate-CoA ligase [EC:6.2.1.9]"@en ; rdfs:label "E6.2.1.9"@en ; @@ -22117,18 +22117,6 @@ bo:661 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "661"@en . -bo:23496 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.1.1.202"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.202"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "23496"@en . - bo:29221 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01560"@en ; rdfs:label "BSU01560"@en , "ybaM"@en , "kbaA"@en , "ybxC"@en ; @@ -22154,6 +22142,18 @@ bo:29221 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "29221"@en . +bo:23496 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.1.1.202"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.202"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "23496"@en . + bo:43 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "ribosomal RNA-23S"@en ; rdfs:label "RrnG-23S"@en , "BSU_rRNA_27"@en ; @@ -22428,15 +22428,15 @@ bo:5684 a sybio:Operon , owl:NamedIndividual ; rdfs:label "myo-inosose-2 dehydratase"@en , "ketoinositol dehydratase"@en , "inosose 2 3-dehydratase"@en , "GO:0050114"@en , "2 4 6 3 5-pentahydroxycyclohexanone hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050114"^^xsd:string ; + owl:hasValue "4.2.1.44"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MYO-INOSOSE-2-DEHYDRATASE-RXN"^^xsd:string ; + owl:hasValue "GO:0050114"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.44"^^xsd:string ; + owl:hasValue "MYO-INOSOSE-2-DEHYDRATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -22777,11 +22777,11 @@ bo:18166 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E3.5.1.90"@en , "CBIZ"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043756"^^xsd:string ; + owl:hasValue "COG1865"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1865"^^xsd:string ; + owl:hasValue "0043756"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -23189,6 +23189,17 @@ bo:25293 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11743 ; tawny:name "25293"@en . +bo:25381 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "oxygen oxidoreductase(21-hydroxylating)"@en , "17alpha-Hydroxyprogesterone,hydrogen-donor"@en , "C01176 + C00030 + C00007 <=> C05488 + C00028 + C00001"@en , "cpd:C01176 <=> cpd:C01176"@en ; + sybio:accession "RN:R03326"^^xsd:string ; + sybio:catalyzedBy bo:19141 ; + sybio:catalyzingClass bo:25382 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25381"@en . + bo:10071 a sybio:Protein , owl:NamedIndividual , bo:364 ; rdfs:comment "BSU05190;putative permease"@en , "Uncharacterized MFS-type transporter ydeG;"@en ; rdfs:label "ydeG"@en , "YdeG"@en , "BSU05190"@en ; @@ -23207,17 +23218,6 @@ bo:10071 a sybio:Protein , owl:NamedIndividual , bo:364 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10071"@en . -bo:25381 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "oxygen oxidoreductase(21-hydroxylating)"@en , "17alpha-Hydroxyprogesterone,hydrogen-donor"@en , "C01176 + C00030 + C00007 <=> C05488 + C00028 + C00001"@en , "cpd:C01176 <=> cpd:C01176"@en ; - sybio:accession "RN:R03326"^^xsd:string ; - sybio:catalyzedBy bo:19141 ; - sybio:catalyzingClass bo:25382 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25381"@en . - bo:6388 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ydbM_terminator"@en ; sybio:NA "TTGAGTCATAAAAAAAAGAGCCTTACCGGCTCTTTTTATGTATTGTT"^^xsd:string ; @@ -23293,11 +23293,11 @@ bo:18217 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "HMG1"@en , "E1.1.1.34"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1257"^^xsd:string ; + owl:hasValue "0004420"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004420"^^xsd:string ; + owl:hasValue "COG1257"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -23502,16 +23502,6 @@ bo:31379 a owl:NamedIndividual , sybio:CDS ; "53.0"@en ; tawny:name "31379"@en . -bo:27889 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "blt_RBS_upstream"@en ; - sybio:NA "TTGAAAAAAGCTTCAAGCGAAAAGGATAGGTAAAAAGGGTTCAAT"^^xsd:string ; - sybio:begin "2716908"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2716952"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27888 ; - tawny:name "27889"@en . - bo:12579 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C5H9NO2"@en ; rdfs:label "L-Proline"@en , "2-Pyrrolidinecarboxylic acid"@en , "C5H9NO2"@en ; @@ -23523,6 +23513,16 @@ bo:12579 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00148"@en ; tawny:name "12579"@en . +bo:27889 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "blt_RBS_upstream"@en ; + sybio:NA "TTGAAAAAAGCTTCAAGCGAAAAGGATAGGTAAAAAGGGTTCAAT"^^xsd:string ; + sybio:begin "2716908"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2716952"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27888 ; + tawny:name "27889"@en . + bo:31467 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU07940"@en ; rdfs:label "yfkC"@en , "BSU07940"@en ; @@ -24130,63 +24130,63 @@ bo:26085 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0005978"@en , "glycogen synthesis"@en , "glycogen anabolism"@en , "glycogen biosynthesis"@en , "glycogen formation"@en , "glycogen biosynthetic process"@en ; rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526412 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "GLYCOGENSYNTH-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592590 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "542330 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005978"^^xsd:string ; + owl:hasValue "507571 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531235 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "557874 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557874 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "GO:0005978"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585831 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "536604 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602513 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "600611 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536604 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "531235 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507571 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "592590 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547668 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "487616 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600611 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "469910 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCOGENSYNTH-PWY"^^xsd:string ; + owl:hasValue "526412 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542330 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "517545 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581683 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "568472 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448794 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "581683 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -24194,27 +24194,27 @@ bo:26085 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469910 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "552255 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552255 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "547668 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568472 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "585831 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517545 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "602513 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599704 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "448794 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487616 \"Glycogen synthesis\""^^xsd:string ; + owl:hasValue "599704 \"Glycogen synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -24267,11 +24267,11 @@ bo:19009 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "B3GAT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT43"^^xsd:string ; + owl:hasValue "0015018"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0015018"^^xsd:string ; + owl:hasValue "GT43"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -24559,11 +24559,11 @@ bo:13547 a sybio:Compound , owl:NamedIndividual ; rdfs:label "carbamoyl phosphate synthase"@en , "GO:0004086"@en , "carbamoyl-phosphate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004086"^^xsd:string ; + owl:hasValue "6.3.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.-.-"^^xsd:string ; + owl:hasValue "GO:0004086"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -24727,10 +24727,10 @@ bo:13811 a sybio:Compound , owl:NamedIndividual ; a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: L-glutamate 5-semialdehyde + phosphate + NADP+ = L-gamma-glutamyl 5-phosphate + NADPH + H+."@en ; - rdfs:label "glutamate-5-semialdehyde dehydrogenase"@en , "gamma-glutamyl phosphate reductase"@en , "L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase"@en , "glutamate-gamma-semialdehyde dehydrogenase"@en , "gamma-glutamylphosphate reductase"@en , "GO:0004350"@en , "glutamate semialdehyde dehydrogenase"@en , "beta-glutamylphosphate reductase"@en , "glutamate-phosphate reductase"@en , "glutamylphosphate reductase"@en , "glutamyl-gamma-semialdehyde dehydrogenase"@en ; + rdfs:label "glutamate-5-semialdehyde dehydrogenase"@en , "gamma-glutamyl phosphate reductase"@en , "L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase"@en , "glutamate-gamma-semialdehyde dehydrogenase"@en , "gamma-glutamylphosphate reductase"@en , "GO:0004350"@en , "beta-glutamylphosphate reductase"@en , "glutamate semialdehyde dehydrogenase"@en , "glutamate-phosphate reductase"@en , "glutamylphosphate reductase"@en , "glutamyl-gamma-semialdehyde dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTSEMIALDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.2.1.41"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -24742,7 +24742,7 @@ bo:13811 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.41"^^xsd:string ; + owl:hasValue "GLUTSEMIALDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -25179,15 +25179,15 @@ bo:27141 a sybio:FFL , owl:NamedIndividual ; rdfs:label "GO:0004049"@en , "anthranilate synthase"@en , "anthranilate synthetase"@en , "chorismate pyruvate-lyase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004049"^^xsd:string ; + owl:hasValue "4.1.3.27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.27"^^xsd:string ; + owl:hasValue "ANTHRANSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ANTHRANSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004049"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -25243,11 +25243,11 @@ bo:28908 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DEOXYCYTIDINE-KINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.1.74"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.74"^^xsd:string ; + owl:hasValue "DEOXYCYTIDINE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -25323,15 +25323,15 @@ bo:15293 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "histidinol-phosphatase"@en , "HPpase"@en , "L-histidinol-phosphate phosphohydrolase"@en , "L-histidinol phosphate phosphatase"@en , "histidinolphosphate phosphatase"@en , "histidinol phosphate phosphatase"@en , "histidinolphosphatase"@en , "GO:0004401"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HISTIDPHOS-RXN"^^xsd:string ; + owl:hasValue "3.1.3.15"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004401"^^xsd:string ; + owl:hasValue "HISTIDPHOS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.15"^^xsd:string ; + owl:hasValue "GO:0004401"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -25914,6 +25914,16 @@ bo:16350 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04103"@en ; tawny:name "16350"@en . +bo:28021 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yuzC_RBS"@en ; + sybio:NA "TGCGAGGTGCTCCC"^^xsd:string ; + sybio:begin "3257679"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3257692"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30835 ; + tawny:name "28021"@en . + bo:22296 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.5.1.87"@en ; @@ -25926,16 +25936,6 @@ bo:22296 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22296"@en . -bo:28021 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yuzC_RBS"@en ; - sybio:NA "TGCGAGGTGCTCCC"^^xsd:string ; - sybio:begin "3257679"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3257692"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30835 ; - tawny:name "28021"@en . - bo:9028 a owl:NamedIndividual , bo:550 , sybio:Protein ; rdfs:comment "Probable rhamnogalacturonan acetylesterase yesY"@en , "BSU07070;rhamnogalacturonan acetylesterase"@en ; rdfs:label "yesY"@en , "BSU07070"@en , "YesY"@en ; @@ -25997,23 +25997,6 @@ bo:22472 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22472"@en . -bo:3479 a owl:NamedIndividual , sybio:Promoter , sybio:SigAPromoter , sybio:ConstitutiveSigAPromoter ; - rdfs:label "yflG"@en ; - sybio:NA "TTTTCCCAGGTCCGTGTGTTTCCTATTTTTAAGACAGTTGTGGTAAGCTTAATCTAGATTATTTAA"^^xsd:string ; - sybio:annotatedSequence "TTTTCCCAGGTCCGTGTGT{TTCCTA}TTTTTAAGACAGTTGTGG{TAAGCT}TAATCT/A/GATTATTTAA"@en ; - sybio:begin "840570"@en ; - sybio:boundBy bo:2600 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "840505"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:originalAnnotatedSequence - "TTTTCCCAGGTCCGTGTGT{TTCCTA}TTTTTAAGACAGTTGTGG{TAAGCT}TAATCT/A/GATTATTTAAAAAGAAAGCGGGAATGACAG"@en ; - sybio:pmid "16207374"^^xsd:string ; - sybio:tfbsEnd "+31"@en ; - sybio:tfbsStart "-55"^^xsd:string ; - sybio:upstreamOf bo:31051 , bo:28068 ; - tawny:name "3479"@en . - bo:9204 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU12830;two-component apoptosis factor"@en , "Stage II sporulation protein SA"@en ; rdfs:label "SpoIISA"@en , "YkaC"@en , "BSU12830"@en , "spoIISA"@en ; @@ -26032,6 +26015,23 @@ bo:9204 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9204"@en . +bo:3479 a owl:NamedIndividual , sybio:Promoter , sybio:SigAPromoter , sybio:ConstitutiveSigAPromoter ; + rdfs:label "yflG"@en ; + sybio:NA "TTTTCCCAGGTCCGTGTGTTTCCTATTTTTAAGACAGTTGTGGTAAGCTTAATCTAGATTATTTAA"^^xsd:string ; + sybio:annotatedSequence "TTTTCCCAGGTCCGTGTGT{TTCCTA}TTTTTAAGACAGTTGTGG{TAAGCT}TAATCT/A/GATTATTTAA"@en ; + sybio:begin "840570"@en ; + sybio:boundBy bo:2600 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "840505"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:originalAnnotatedSequence + "TTTTCCCAGGTCCGTGTGT{TTCCTA}TTTTTAAGACAGTTGTGG{TAAGCT}TAATCT/A/GATTATTTAAAAAGAAAGCGGGAATGACAG"@en ; + sybio:pmid "16207374"^^xsd:string ; + sybio:tfbsEnd "+31"@en ; + sybio:tfbsStart "-55"^^xsd:string ; + sybio:upstreamOf bo:31051 , bo:28068 ; + tawny:name "3479"@en . + bo:22560 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "5.5.1.7"@en ; @@ -26131,11 +26131,11 @@ bo:3831 a sybio:NegativelyRegulatedOperator , owl:NamedIndiv rdfs:label "queuine tRNA-ribosyltransferase"@en , "guanine queuine-tRNA transglycosylase"@en , "[tRNA]-guanine:queuine tRNA-D-ribosyltransferase"@en , "queuine transfer ribonucleate ribosyltransferase"@en , "tRNA-guanine transglycosylase"@en , "guanine insertion enzyme"@en , "GO:0008479"@en , "tRNA transglycosylase"@en , "tRNA guanine transglycosidase"@en , "Q-insertase"@en , "transfer ribonucleate glycosyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008479"^^xsd:string ; + owl:hasValue "QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008479"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -26179,17 +26179,6 @@ bo:21606 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "21606"@en . -bo:290 a owl:Class ; - rdfs:label "COG1948"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1948"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "290"@en . - a owl:Class ; rdfs:comment "Any process that generates a pyrimidine, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis."@en ; @@ -26213,17 +26202,28 @@ bo:1022 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1022"@en . +bo:290 a owl:Class ; + rdfs:label "COG1948"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1948"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "290"@en . + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: L-threonine + NAD+ = L-2-amino-3-oxobutanoate + NADH + H+."@en ; rdfs:label "GO:0008743"@en , "threonine dehydrogenase"@en , "L-threonine 3-dehydrogenase"@en , "threonine 3-dehydrogenase"@en , "L-threonine:NAD+ oxidoreductase"@en , "L-threonine dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008743"^^xsd:string ; + owl:hasValue "THREODEHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THREODEHYD-RXN"^^xsd:string ; + owl:hasValue "GO:0008743"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -26259,11 +26259,11 @@ bo:18946 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "GCNT1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003829"^^xsd:string ; + owl:hasValue "GT14"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT14"^^xsd:string ; + owl:hasValue "0003829"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -26277,11 +26277,11 @@ bo:18946 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "dTDP-4-ketorhamnose reductase"@en , "dTDP-4-keto-L-rhamnose reductase"@en , "thymidine diphospho-4-ketorhamnose reductase"@en , "dTDP-4-dehydrorhamnose reductase"@en , "dTDP-6-deoxy-L-mannose:NADP+ 4-oxidoreductase"@en , "TDP-4-keto-rhamnose reductase"@en , "reductase thymidine diphospho-4-ketorhamnose"@en , "dTDP-6-deoxy-L-mannose dehydrogenase"@en , "GO:0008831"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DTDPDEHYRHAMREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0008831"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008831"^^xsd:string ; + owl:hasValue "DTDPDEHYRHAMREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -26306,11 +26306,11 @@ bo:15307 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "YFBR"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008253"^^xsd:string ; + owl:hasValue "COG1896"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1896"^^xsd:string ; + owl:hasValue "0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -26338,6 +26338,14 @@ bo:4484 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4483 ; tawny:name "4484"@en . +bo:4572 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydhK"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30814 ; + sybio:operonGenes "ydhK"@en ; + tawny:name "4572"@en . + bo:16225 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "4-carboxymuconolactone decarboxylase [EC:4.1.1.44]"@en ; rdfs:label "E4.1.1.44"@en , "PCAC"@en ; @@ -26351,24 +26359,6 @@ bo:16225 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01607"@en ; tawny:name "16225"@en . -bo:4572 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydhK"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30814 ; - sybio:operonGenes "ydhK"@en ; - tawny:name "4572"@en . - -bo:16313 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "kynureninase [EC:3.7.1.3]"@en ; - rdfs:label "E3.7.1.3"@en ; - sybio:accession "COG3844"^^xsd:string , "0030429"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16314 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01556"@en ; - tawny:name "16313"@en . - bo:4660 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "citST-yflP_terminator"@en ; sybio:NA "TAAAATCCCGACATCCCGGGATTTTTTTCATGCCGA"^^xsd:string ; @@ -26381,6 +26371,16 @@ bo:4660 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4659 ; tawny:name "4660"@en . +bo:16313 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "kynureninase [EC:3.7.1.3]"@en ; + rdfs:label "E3.7.1.3"@en ; + sybio:accession "COG3844"^^xsd:string , "0030429"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16314 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01556"@en ; + tawny:name "16313"@en . + bo:16401 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "prephenate dehydrogenase (NADP+) [EC:1.3.1.13]"@en ; rdfs:label "E1.3.1.13"@en , "TYR1"@en ; @@ -26586,6 +26586,18 @@ bo:10499 a sybio:Protein , owl:NamedIndividual , bo:787 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10499"@en . +bo:25897 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.13.57"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.13.57"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25897"@en . + bo:10587 a sybio:Protein , owl:NamedIndividual , bo:462 ; rdfs:comment "Bacilysin biosynthesis oxidoreductase bacC;Bacillorin synthetase C"@en , "bacilysin biosynthesis oxidoreductase;BSU37720"@en ; rdfs:label "BSU37720"@en , "Ipa-82d"@en , "YwfD"@en , "bacC"@en , "BacC"@en ; @@ -26604,17 +26616,15 @@ bo:10587 a sybio:Protein , owl:NamedIndividual , bo:462 ; sybio:taxId "224308"@en ; tawny:name "10587"@en . -bo:25897 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.13.57"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.13.57"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25897"@en . +bo:25985 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "3-methyl-2-oxobutanoate dehydrogenasecomplexes:3-methyl-2-oxobutanoate dehydrogenasea part of multi-step reaction (see R04225+R03174+R07618, possiblyidentical to R03171)subsequently R03174TPP-dependent enzyme (see R07603+R07604) - reversible"@en ; + rdfs:label "[dihydrolipoyllysine-residue(2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase(decarboxylating, acceptor-2-methylpropanoylating)"@en , "C00671 + C15972 <=> C15979 + C00011"@en , " <=> "@en , "(S)-3-Methyl-2-oxopentanoate"@en ; + sybio:accession "RN:R04225"^^xsd:string ; + sybio:catalyzingClass bo:21875 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25985"@en . bo:10675 a sybio:Protein , owl:NamedIndividual , bo:436 , bo:517 ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator ydeF"@en , "BSU05180;putative PLP-dependent transcriptional regulator"@en ; @@ -26636,16 +26646,6 @@ bo:10675 a sybio:Protein , owl:NamedIndividual , bo:436 , tawny:name "10675"@en ; owl:sameAs bo:6654 . -bo:25985 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "3-methyl-2-oxobutanoate dehydrogenasecomplexes:3-methyl-2-oxobutanoate dehydrogenasea part of multi-step reaction (see R04225+R03174+R07618, possiblyidentical to R03171)subsequently R03174TPP-dependent enzyme (see R07603+R07604) - reversible"@en ; - rdfs:label "[dihydrolipoyllysine-residue(2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase(decarboxylating, acceptor-2-methylpropanoylating)"@en , "C00671 + C15972 <=> C15979 + C00011"@en , " <=> "@en , "(S)-3-Methyl-2-oxopentanoate"@en ; - sybio:accession "RN:R04225"^^xsd:string ; - sybio:catalyzingClass bo:21875 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25985"@en . - bo:17054 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphatidylinositol-3-phosphatase [EC:3.1.3.64]"@en ; rdfs:label "E3.1.3.64"@en ; @@ -26752,15 +26752,15 @@ bo:23088 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "glucohydrolase"@en , "6-phospho-beta-glucosidase"@en , "phospho-beta-glucosidase"@en , "GO:0008706"@en , "phospho-beta-glucosidase A"@en , "phosphocellobiase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008706"^^xsd:string ; + owl:hasValue "6-PHOSPHO-BETA-GLUCOSIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.86"^^xsd:string ; + owl:hasValue "GO:0008706"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6-PHOSPHO-BETA-GLUCOSIDASE-RXN"^^xsd:string ; + owl:hasValue "3.2.1.86"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -26943,17 +26943,6 @@ bo:11592 a owl:Class , sybio:Pathway , owl:NamedIndividual ; sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00290"@en ; tawny:name "11592"@en . -bo:11680 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00624"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00624"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11680"@en . - bo:30480 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU33140"@en ; rdfs:label "BSU33140"@en , "yvqJ"@en ; @@ -26979,6 +26968,17 @@ bo:30480 a sybio:CDS , owl:NamedIndividual ; "26.0"@en ; tawny:name "30480"@en . +bo:11680 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00624"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00624"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11680"@en . + bo:26990 a sybio:Protein , owl:NamedIndividual , bo:681 ; rdfs:comment "UPF0062 protein yexA;derived protein"@en , "BSU06460;factor required for phosphoribosylformylglycinamidine synthetase activity"@en ; rdfs:label "BSU06460"@en , "yexA"@en , "PurS"@en , "YexA"@en , "purS"@en ; @@ -27399,24 +27399,6 @@ bo:30267 a owl:NamedIndividual , sybio:CDS ; "93.0"@en ; tawny:name "30267"@en . -bo:11467 a bo:652 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Molybdenum cofactor biosynthesis protein C"@en , "BSU05960;molybdenum cofactor biosynthesis protein C"@en ; - rdfs:label "YdiG"@en , "BSU05960"@en , "MoaC"@en , "moaC"@en ; - sybio:AA "MNGFSHFNEQGRAQMVDISEKSSTVRTAAAVSSVHMKNEVYEKIQSHDIGKGDVLAVAQVAGIMAAKQTSNIIPMCHPLSLSGVDISFDWKIKEAEVILHIKAQVKTKGSTGVEMEALTSASVCALTVYDMCKALDKGMVIGPTFLLEKTGGKNGDFKRELSEYNLEDQK"@en ; - sybio:accession "O05520"^^xsd:string , "BSU05960"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32020 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "18451.375"^^xsd:string ; - sybio:pI "6.229195"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11123 , bo:9759 , bo:10994 , bo:9181 , bo:9277 , bo:10993 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11467"@en . - bo:26777 a owl:NamedIndividual , bo:930 , sybio:Protein , bo:663 ; rdfs:comment "Ribokinase;derived protein"@en , "BSU35920;ribokinase"@en ; rdfs:label "rbsK"@en , "RbsK"@en , "BSU35920"@en ; @@ -27437,6 +27419,24 @@ bo:26777 a owl:NamedIndividual , bo:930 , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "26777"@en . +bo:11467 a bo:652 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Molybdenum cofactor biosynthesis protein C"@en , "BSU05960;molybdenum cofactor biosynthesis protein C"@en ; + rdfs:label "YdiG"@en , "BSU05960"@en , "MoaC"@en , "moaC"@en ; + sybio:AA "MNGFSHFNEQGRAQMVDISEKSSTVRTAAAVSSVHMKNEVYEKIQSHDIGKGDVLAVAQVAGIMAAKQTSNIIPMCHPLSLSGVDISFDWKIKEAEVILHIKAQVKTKGSTGVEMEALTSASVCALTVYDMCKALDKGMVIGPTFLLEKTGGKNGDFKRELSEYNLEDQK"@en ; + sybio:accession "O05520"^^xsd:string , "BSU05960"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32020 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "18451.375"^^xsd:string ; + sybio:pI "6.229195"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11123 , bo:9759 , bo:10994 , bo:9181 , bo:9277 , bo:10993 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11467"@en . + bo:6193 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "hut_terminator"@en ; sybio:NA "AAAAAGCACACCCCGCTCAGCATGGGATGTGCTTTATTTTTTATTCT"^^xsd:string ; @@ -27474,22 +27474,6 @@ bo:30355 a sybio:CDS , owl:NamedIndividual ; "50.0"@en ; tawny:name "30355"@en . -bo:11555 a owl:Class , owl:NamedIndividual , sybio:Pathway ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00051.png"@en ; - rdfs:label "Fructose and mannose metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00051"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11557 , bo:11559 , bo:11652 ; - sybio:derivesFrom bo:11556 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00051"@en ; - tawny:name "11555"@en . - bo:26865 a sybio:Protein , owl:NamedIndividual , bo:426 ; rdfs:comment "putative phosphotransferase system enzyme IIA component;BSU40120"@en , "Putative phosphotransferase enzyme IIA component yyzE;derived protein"@en ; rdfs:label "BSU40120"@en , "YyzE"@en , "yyzE"@en ; @@ -27511,6 +27495,22 @@ bo:26865 a sybio:Protein , owl:NamedIndividual , bo:426 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26865"@en . +bo:11555 a owl:Class , owl:NamedIndividual , sybio:Pathway ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00051.png"@en ; + rdfs:label "Fructose and mannose metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00051"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11557 , bo:11559 , bo:11652 ; + sybio:derivesFrom bo:11556 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00051"@en ; + tawny:name "11555"@en . + bo:6281 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yycCB"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -27900,16 +27900,6 @@ bo:31360 a owl:NamedIndividual , sybio:CDS ; "35.0"@en ; tawny:name "31360"@en . -bo:27870 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "ccpC_RBS"@en ; - sybio:NA "ACAAAAAGGAGGACGAC"^^xsd:string ; - sybio:begin "1486028"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1486044"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28892 ; - tawny:name "27870"@en . - bo:12560 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C10H17N3O5"@en ; rdfs:label "N-(gamma-L-Glutamyl)amino-D-proline"@en , "Linatine"@en , "C10H17N3O5"@en ; @@ -27920,6 +27910,16 @@ bo:12560 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05939"@en ; tawny:name "12560"@en . +bo:27870 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "ccpC_RBS"@en ; + sybio:NA "ACAAAAAGGAGGACGAC"^^xsd:string ; + sybio:begin "1486028"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1486044"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28892 ; + tawny:name "27870"@en . + bo:25061 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C02759 => cpd:C02759"@en , "alpha-Pinene-oxide lyase (decyclizing)"@en , "C02759 <=> C04435"@en ; @@ -27971,26 +27971,6 @@ bo:30318 a sybio:CDS , owl:NamedIndividual ; "23.0"@en ; tawny:name "30318"@en . -bo:26828 a sybio:Protein , bo:1699 , owl:NamedIndividual ; - rdfs:comment "Galactokinase;derived protein"@en , "BSU38200;galactokinase"@en ; - rdfs:label "BSU38200"@en , "galK"@en , "Ipa-35d"@en , "GalK"@en ; - sybio:AA "MREELKGIFASVFGEKEGLRFFFAPGRVNLIGEHTDYNGGHVFPCALTMGTYAAVAERNDGLVRMYSDNFRNAGIKECSLDDIRYQKEDDWANYPKGVIYEFQQRGYAVPHGFDIVFSGNIPNGAGLSSSASIELLMGVVLQSYFHPEVDALELVKMAQHAENHFIGVNCGIMDQFAIGMGKKHHAMLLNCDTLDYEYSKLNVSGLALVIANTNKKRTLADSSYNTRRQECNDALLDLKKGLDIAALGDIKPSDFDAHSSLIQNETNRRRAKHAVYENHRAIKTAHMFKENNIDEIGQLMKESHLSLKDDYEVTCPELDELVFAAWDHEGVIGSRMTGAGFGGCTISIVKDEFVDDFIQKVGDRYQEKTGLRADFYVADIGEGARELKGE"@en ; - sybio:accession "16080871"^^xsd:string , "BSU38200"^^xsd:string , "P39574"^^xsd:string , "937297"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32577 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "43519.265"^^xsd:string ; - sybio:pI "5.285728"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26840 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26828"@en . - bo:11518 a bo:302 , bo:401 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "two-component response regulator [YvfT];BSU34060"@en , "Uncharacterized transcriptional regulatory protein yvfU"@en ; rdfs:label "yvfU"@en , "BSU34060"@en , "YvfU"@en ; @@ -28012,6 +27992,26 @@ bo:11518 a bo:302 , bo:401 , sybio:Protein , owl:NamedIndi tawny:name "11518"@en ; owl:sameAs bo:6556 . +bo:26828 a sybio:Protein , bo:1699 , owl:NamedIndividual ; + rdfs:comment "Galactokinase;derived protein"@en , "BSU38200;galactokinase"@en ; + rdfs:label "BSU38200"@en , "galK"@en , "Ipa-35d"@en , "GalK"@en ; + sybio:AA "MREELKGIFASVFGEKEGLRFFFAPGRVNLIGEHTDYNGGHVFPCALTMGTYAAVAERNDGLVRMYSDNFRNAGIKECSLDDIRYQKEDDWANYPKGVIYEFQQRGYAVPHGFDIVFSGNIPNGAGLSSSASIELLMGVVLQSYFHPEVDALELVKMAQHAENHFIGVNCGIMDQFAIGMGKKHHAMLLNCDTLDYEYSKLNVSGLALVIANTNKKRTLADSSYNTRRQECNDALLDLKKGLDIAALGDIKPSDFDAHSSLIQNETNRRRAKHAVYENHRAIKTAHMFKENNIDEIGQLMKESHLSLKDDYEVTCPELDELVFAAWDHEGVIGSRMTGAGFGGCTISIVKDEFVDDFIQKVGDRYQEKTGLRADFYVADIGEGARELKGE"@en ; + sybio:accession "16080871"^^xsd:string , "BSU38200"^^xsd:string , "P39574"^^xsd:string , "937297"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32577 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "43519.265"^^xsd:string ; + sybio:pI "5.285728"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26840 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26828"@en . + bo:6244 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yxaC_terminator"@en ; sybio:NA "AGAAAGACTGCCCCGGGGGAGGGCAGTCTTTTTCGTTTAAGAA"^^xsd:string ; @@ -28444,7 +28444,7 @@ bo:12611 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004829"^^xsd:string ; + owl:hasValue "15113 \"threonine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -28452,7 +28452,7 @@ bo:12611 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15113 \"threonine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004829"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -29329,15 +29329,15 @@ bo:28801 a sybio:CDS , owl:NamedIndividual ; rdfs:label "oxidoreductase"@en , "GO:0004030"@en , "aldehyde dehydrogenase [NAD(P)+]"@en , "ALDH"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALDEHYDE-DEHYDROGENASE-NADP+-RXN"^^xsd:string ; + owl:hasValue "GO:0004030"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004030"^^xsd:string ; + owl:hasValue "1.2.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.5"^^xsd:string ; + owl:hasValue "ALDEHYDE-DEHYDROGENASE-NADP+-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -29948,11 +29948,11 @@ bo:17746 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E4.3.1.2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3799"^^xsd:string ; + owl:hasValue "0050096"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050096"^^xsd:string ; + owl:hasValue "COG3799"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -30340,11 +30340,11 @@ bo:18751 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "FUT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT10"^^xsd:string ; + owl:hasValue "0017060"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0017060"^^xsd:string ; + owl:hasValue "GT10"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -30616,6 +30616,18 @@ bo:10392 a bo:636 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10392"@en . +bo:25790 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.13.69"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.13.69"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25790"@en . + bo:10480 a owl:NamedIndividual , sybio:Protein , bo:462 ; rdfs:comment "Uncharacterized oxidoreductase yusZ"@en , "BSU32980;putative short-chain acyl dehydrogenase;"@en ; rdfs:label "BSU32980"@en , "YvxA"@en , "yusZ"@en , "YusZ"@en ; @@ -30633,18 +30645,6 @@ bo:10480 a owl:NamedIndividual , sybio:Protein , bo:462 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10480"@en . -bo:25790 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.13.69"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.13.69"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25790"@en . - bo:6797 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU37610"@en ; rdfs:label "YwzC"@en , "BSU37610"@en ; @@ -31107,6 +31107,17 @@ bo:10179 a owl:NamedIndividual , sybio:Protein , bo:1267 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10179"@en . +bo:25577 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C03021 + gl:G00008 <=> cpd:C03021 + gl:G00008"@en , "C03021 + G00008 <=> C00621 + G00009"@en ; + sybio:accession "RN:R05976"^^xsd:string ; + sybio:catalyzedBy bo:18910 , bo:18904 , bo:18895 , bo:18892 , bo:18901 , bo:18907 , bo:18898 , bo:18889 ; + sybio:catalyzingClass bo:25578 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25577"@en . + bo:10267 a sybio:Protein , bo:200 , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU23000"@en , "Uncharacterized protein ypbE"@en ; rdfs:label "YpbE"@en , "BSU23000"@en , "ypbE"@en ; @@ -31124,16 +31135,17 @@ bo:10267 a sybio:Protein , bo:200 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10267"@en . -bo:25577 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C03021 + gl:G00008 <=> cpd:C03021 + gl:G00008"@en , "C03021 + G00008 <=> C00621 + G00009"@en ; - sybio:accession "RN:R05976"^^xsd:string ; - sybio:catalyzedBy bo:18910 , bo:18904 , bo:18895 , bo:18892 , bo:18901 , bo:18907 , bo:18898 , bo:18889 ; - sybio:catalyzingClass bo:25578 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25577"@en . +bo:25665 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.134"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.134"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25665"@en . bo:10355 a owl:NamedIndividual , bo:217 , sybio:Protein ; rdfs:comment "putative AdoMet-dependent methyltransferase;BSU27280"@en , "Uncharacterized methyltransferase yrrT"@en ; @@ -31151,18 +31163,6 @@ bo:10355 a owl:NamedIndividual , bo:217 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10355"@en . -bo:25665 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.134"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.134"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25665"@en . - bo:5081 a sybio:Operon , owl:NamedIndividual ; rdfs:label "cwlC"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -31426,25 +31426,6 @@ bo:11096 a sybio:Protein , owl:NamedIndividual , bo:343 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11096"@en . -bo:11184 a sybio:Protein , bo:356 , owl:NamedIndividual ; - rdfs:comment "BSU40150;ABC transporter (ATP-binding protein)"@en , "Probable peptide export ATP-binding protein yydI"@en ; - rdfs:label "YydI"@en , "BSU40150"@en , "yydI"@en ; - sybio:AA "MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFLLHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYIQENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE"@en ; - sybio:accession "Q45593"^^xsd:string , "BSU40150"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32219 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:interactsWith bo:11339 , bo:9233 , bo:11020 , bo:9232 , bo:9786 , bo:11396 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "23881.45"^^xsd:string ; - sybio:pI "8.06144"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11184"@en . - bo:26494 a bo:1165 , sybio:Protein , owl:NamedIndividual , bo:765 , bo:764 ; rdfs:comment "branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase);BSU24030"@en , "derived protein;Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex"@en ; rdfs:label "BfmB2"@en , "BSU24030"@en , "bfmBB"@en , "BfmBB"@en , "BkdB"@en , "bkdB"@en , "Bkd"@en ; @@ -31465,15 +31446,30 @@ bo:26494 a bo:1165 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26494"@en . +bo:11184 a sybio:Protein , bo:356 , owl:NamedIndividual ; + rdfs:comment "BSU40150;ABC transporter (ATP-binding protein)"@en , "Probable peptide export ATP-binding protein yydI"@en ; + rdfs:label "YydI"@en , "BSU40150"@en , "yydI"@en ; + sybio:AA "MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFLLHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYIQENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE"@en ; + sybio:accession "Q45593"^^xsd:string , "BSU40150"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32219 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:interactsWith bo:11339 , bo:9233 , bo:11020 , bo:9232 , bo:9786 , bo:11396 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "23881.45"^^xsd:string ; + sybio:pI "8.06144"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11184"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: urea + H2O = CO2 + 2 NH3."@en ; rdfs:label "urea amidohydrolase"@en , "GO:0009039"@en , "urease"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.5"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "e0170"^^xsd:string ; owl:onProperty sybio:accession @@ -31486,6 +31482,10 @@ bo:26494 a bo:1165 , sybio:Protein , owl:NamedIndividual , owl:hasValue "UREASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.5.1.5"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -31514,27 +31514,6 @@ bo:30072 a sybio:CDS , owl:NamedIndividual ; "1.0"@en ; tawny:name "30072"@en . -bo:11272 a owl:NamedIndividual , bo:319 , bo:317 , bo:318 , bo:316 , sybio:Protein ; - rdfs:comment "Elongation factor Tu;Translation elongation factor Tu"@en , "BSU01130;elongation factor Tu"@en ; - rdfs:label "TufA"@en , "tuf"@en , "BSU01130"@en ; - sybio:AA "MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVLHKKSGKGTAMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVVKGSALKALEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGIIHLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVSTITE"@en ; - sybio:accession "BSU01130"^^xsd:string , "P33166"^^xsd:string , "A7L755"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29184 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "3.7.4 : Translation elongation"^^xsd:string ; - sybio:interactsWith bo:11265 , bo:11269 , bo:11270 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , ; - sybio:molecularWeight "43591.615"^^xsd:string ; - sybio:pI "4.907936"^^xsd:string ; - sybio:productType "f : factor"^^xsd:string ; - sybio:relatedTo bo:11278 , bo:11300 , bo:11273 , bo:11288 , bo:9361 , bo:11297 , bo:11291 , bo:11280 , bo:11299 , bo:11283 , bo:11284 ; - sybio:taxId "224308"@en ; - tawny:name "11272"@en . - bo:26582 a sybio:Protein , owl:NamedIndividual , bo:1584 ; rdfs:comment "glycolate oxidase iron-sulfur subunit;BSU28690"@en , "derived protein;Probable glycolate oxidase iron-sulfur subunit"@en ; rdfs:label "BSU28690"@en , "GlcF"@en , "glcF"@en , "YsfD"@en ; @@ -31553,24 +31532,26 @@ bo:26582 a sybio:Protein , owl:NamedIndividual , bo:1584 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26582"@en . -bo:11360 a owl:NamedIndividual , sybio:Protein , bo:512 , bo:513 ; - rdfs:comment "BSU03480;surfactin synthetase"@en , "Surfactin synthetase subunit 1;Recombinant surfactin/lichenysin A synthetase;SrfAA surfactin synthetase"@en ; - rdfs:label "SrfAA"@en , "ComL"@en , "srfAA"@en , "BSU03480"@en , "PsrfA-srfAA-lchAA"@en ; - sybio:AA "MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDYVLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQWSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYLELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASAGGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTFMGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLINDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTGKLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARAGGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGVGPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTESKVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQVHHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGAALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFKEAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQPEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEYLGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSEFAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAPRNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLFEHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPAAAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGRSDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELARIYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPVQSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPSAGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVEDLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDEGIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQFNPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGAGEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQRKLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIVTHANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLDMARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQTVGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAGIAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGRIDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQEMREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTEQKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTVEGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLTGELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERIVSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGETLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFEGDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRSQADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQVQRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTFVLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGGLLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSFAEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTAEETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTISRTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDVAFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLTMSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDKLMEIF"@en ; - sybio:accession "P27206"^^xsd:string , "Q9X578"^^xsd:string , "Q9X579"^^xsd:string , "Q71EF5"^^xsd:string , "Q71EG1"^^xsd:string , "Q71EG2"^^xsd:string , "BSU03480"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; +bo:11272 a owl:NamedIndividual , bo:319 , bo:317 , bo:318 , bo:316 , sybio:Protein ; + rdfs:comment "Elongation factor Tu;Translation elongation factor Tu"@en , "BSU01130;elongation factor Tu"@en ; + rdfs:label "TufA"@en , "tuf"@en , "BSU01130"@en ; + sybio:AA "MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVLHKKSGKGTAMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVVKGSALKALEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGIIHLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVSTITE"@en ; + sybio:accession "BSU01130"^^xsd:string , "P33166"^^xsd:string , "A7L755"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30790 ; + sybio:encodedBy bo:29184 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "402130.96"^^xsd:string ; - sybio:pI "5.000008"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26942 ; + sybio:hasFunction , , , ; + sybio:hasRole "3.7.4 : Translation elongation"^^xsd:string ; + sybio:interactsWith bo:11265 , bo:11269 , bo:11270 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , ; + sybio:molecularWeight "43591.615"^^xsd:string ; + sybio:pI "4.907936"^^xsd:string ; + sybio:productType "f : factor"^^xsd:string ; + sybio:relatedTo bo:11278 , bo:11300 , bo:11273 , bo:11288 , bo:9361 , bo:11297 , bo:11291 , bo:11280 , bo:11299 , bo:11283 , bo:11284 ; sybio:taxId "224308"@en ; - tawny:name "11360"@en . + tawny:name "11272"@en . bo:30160 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24200;"@en ; @@ -31616,6 +31597,25 @@ bo:26670 a sybio:Protein , bo:1273 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26670"@en . +bo:11360 a owl:NamedIndividual , sybio:Protein , bo:512 , bo:513 ; + rdfs:comment "BSU03480;surfactin synthetase"@en , "Surfactin synthetase subunit 1;Recombinant surfactin/lichenysin A synthetase;SrfAA surfactin synthetase"@en ; + rdfs:label "SrfAA"@en , "ComL"@en , "srfAA"@en , "BSU03480"@en , "PsrfA-srfAA-lchAA"@en ; + sybio:AA "MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDYVLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQWSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYLELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASAGGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTFMGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLINDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTGKLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARAGGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGVGPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTESKVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQVHHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGAALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFKEAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQPEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEYLGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSEFAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAPRNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLFEHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPAAAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGRSDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELARIYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPVQSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPSAGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVEDLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDEGIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQFNPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGAGEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQRKLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIVTHANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLDMARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQTVGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAGIAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGRIDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQEMREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTEQKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTVEGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLTGELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERIVSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGETLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFEGDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRSQADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQVQRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTFVLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGGLLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSFAEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTAEETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTISRTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDVAFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLTMSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDKLMEIF"@en ; + sybio:accession "P27206"^^xsd:string , "Q9X578"^^xsd:string , "Q9X579"^^xsd:string , "Q71EF5"^^xsd:string , "Q71EG1"^^xsd:string , "Q71EG2"^^xsd:string , "BSU03480"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30790 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "402130.96"^^xsd:string ; + sybio:pI "5.000008"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26942 ; + sybio:taxId "224308"@en ; + tawny:name "11360"@en . + bo:9 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "ribosomal RNA-16S"@en ; rdfs:label "RrnA-16S"@en , "BSU_rRNA_4"@en ; @@ -31707,11 +31707,11 @@ bo:19506 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PYRROLINECARBDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.5.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.5.1.12"^^xsd:string ; + owl:hasValue "PYRROLINECARBDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -31956,11 +31956,11 @@ bo:32932 a owl:NamedIndividual , sybio:CDS , sybio:KinaseEnco owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.100-RXN"^^xsd:string ; + owl:hasValue "GO:0004671"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004671"^^xsd:string ; + owl:hasValue "2.1.1.100-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -32187,11 +32187,11 @@ bo:11323 a owl:NamedIndividual , sybio:Protein , bo:393 ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0017172"^^xsd:string ; + owl:hasValue "1.13.11.20"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.13.11.20"^^xsd:string ; + owl:hasValue "GO:0017172"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -32492,22 +32492,22 @@ bo:32807 a owl:NamedIndividual , sybio:CDS ; a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: 2-phospho-D-glycerate = phosphoenolpyruvate + H2O."@en ; - rdfs:label "phosphoenolpyruvate hydratase"@en , "14-3-2-protein"@en , "GO:0004634"@en , "gamma-enolase"@en , "2-phosphoglyceric dehydratase"@en , "2-phosphoglycerate enolase"@en , "2-phospho-D-glycerate-hydrolase"@en , "enolase"@en , "phosphopyruvate hydratase"@en , "2-phospho-D-glycerate hydro-lyase"@en , "nervous-system specific enolase"@en , "2-phosphoglycerate dehydratase"@en ; + rdfs:label "phosphoenolpyruvate hydratase"@en , "14-3-2-protein"@en , "GO:0004634"@en , "gamma-enolase"@en , "2-phosphoglyceric dehydratase"@en , "2-phosphoglycerate enolase"@en , "2-phospho-D-glycerate-hydrolase"@en , "enolase"@en , "phosphopyruvate hydratase"@en , "nervous-system specific enolase"@en , "2-phospho-D-glycerate hydro-lyase"@en , "2-phosphoglycerate dehydratase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2PGADEHYDRAT-RXN"^^xsd:string ; + owl:hasValue "4.2.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004634"^^xsd:string ; + owl:hasValue "13384 \"phosphopyruvate hydratase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13384 \"phosphopyruvate hydratase activity\""^^xsd:string ; + owl:hasValue "GO:0004634"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.11"^^xsd:string ; + owl:hasValue "2PGADEHYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -32516,18 +32516,18 @@ bo:32807 a owl:NamedIndividual , sybio:CDS ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + tRNA(n) = diphosphate + tRNA(n+1).;"@en ; - rdfs:label "tRNA CCA-diphosphorylase"@en , "-C-C-A pyrophosphorylase"@en , "tRNA-nucleotidyltransferase"@en , "nucleotidyltransferase"@en , "GO:0004810"@en , "transfer ribonucleate adenylyltransferase"@en , "ATP:tRNA adenylyltransferase"@en , "transfer ribonucleic adenylyl transferase"@en , "transfer ribonucleate nucleotidyltransferase"@en , "CCA-adding enzyme"@en , "ribonucleic cytidylic cytidylic adenylic pyrophosphorylase"@en , "ATP nucleotidyltransferase"@en , "transfer ribonucleate adenyltransferase"@en , "tRNA"@en , "transfer-RNA nucleotidyltransferase"@en , "ribonucleic cytidylyltransferase"@en , "tRNA CCA-pyrophosphorylase"@en , "transfer ribonucleic-terminal trinucleotide nucleotidyltransferase"@en , "transfer ribonucleate cytidylyltransferase"@en , "tRNA adenylyltransferase"@en , "transfer ribonucleic acid nucleotidyl transferase"@en , "transfer RNA adenylyltransferase"@en ; + rdfs:label "tRNA CCA-diphosphorylase"@en , "-C-C-A pyrophosphorylase"@en , "tRNA-nucleotidyltransferase"@en , "nucleotidyltransferase"@en , "GO:0004810"@en , "transfer ribonucleate adenylyltransferase"@en , "ATP:tRNA adenylyltransferase"@en , "transfer ribonucleic adenylyl transferase"@en , "transfer ribonucleate nucleotidyltransferase"@en , "CCA-adding enzyme"@en , "ribonucleic cytidylic cytidylic adenylic pyrophosphorylase"@en , "ATP nucleotidyltransferase"@en , "transfer ribonucleate adenyltransferase"@en , "tRNA"@en , "transfer-RNA nucleotidyltransferase"@en , "ribonucleic cytidylyltransferase"@en , "transfer ribonucleic-terminal trinucleotide nucleotidyltransferase"@en , "tRNA CCA-pyrophosphorylase"@en , "transfer ribonucleate cytidylyltransferase"@en , "tRNA adenylyltransferase"@en , "transfer ribonucleic acid nucleotidyl transferase"@en , "transfer RNA adenylyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "TRNA-ADENYLYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004810"^^xsd:string ; + owl:hasValue "2.7.7.25"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.25"^^xsd:string ; + owl:hasValue "GO:0004810"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -32678,11 +32678,11 @@ bo:14836 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "SRLA"@en , "PTS-GUT-EIIC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3730"^^xsd:string ; + owl:hasValue "COG3732"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3732"^^xsd:string ; + owl:hasValue "COG3730"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -32696,19 +32696,19 @@ bo:14836 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "intracellular copper ion transporter"@en , "plasma membrane copper transporter"@en , "GO:0005375"@en , "copper ion transmembrane transporter"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005375"^^xsd:string ; + owl:hasValue "GO:0005380"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005379"^^xsd:string ; + owl:hasValue "GO:0005378"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005380"^^xsd:string ; + owl:hasValue "GO:0005375"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005378"^^xsd:string ; + owl:hasValue "GO:0005379"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -32919,11 +32919,11 @@ bo:15577 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.4.3.4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004041"^^xsd:string ; + owl:hasValue "COG1231"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1231"^^xsd:string ; + owl:hasValue "0004041"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -32987,16 +32987,6 @@ bo:28078 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31133 ; tawny:name "28078"@en . -bo:16583 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "phosphinothricin biosynthesis protein PhpD"@en ; - rdfs:label "PHPD"@en ; - sybio:accession "Q5IW40"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16584 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12905"@en ; - tawny:name "16583"@en . - bo:28166 a owl:NamedIndividual , sybio:RBS ; rdfs:label "gltC_RBS"@en ; sybio:NA "AGATGGATGTGAGACAAAC"^^xsd:string ; @@ -33007,6 +32997,16 @@ bo:28166 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31554 ; tawny:name "28166"@en . +bo:16583 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "phosphinothricin biosynthesis protein PhpD"@en ; + rdfs:label "PHPD"@en ; + sybio:accession "Q5IW40"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16584 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12905"@en ; + tawny:name "16583"@en . + bo:16671 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "phospholipid-hydroperoxide glutathione peroxidase [EC:1.11.1.12]"@en ; rdfs:label "E1.11.1.12"@en ; @@ -33447,6 +33447,18 @@ bo:4893 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4892 ; tawny:name "4893"@en . + + a owl:Class ; + rdfs:comment "The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; + rdfs:label "methionyl-tRNA aminoacylation"@en , "GO:0006431"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006431"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16546 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "aldehyde dehydrogenase"@en ; rdfs:label "PHPJ"@en ; @@ -33460,18 +33472,6 @@ bo:16546 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12907"@en ; tawny:name "16546"@en . - - a owl:Class ; - rdfs:comment "The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; - rdfs:label "methionyl-tRNA aminoacylation"@en , "GO:0006431"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006431"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28129 a owl:NamedIndividual , sybio:RBS ; rdfs:label "spoVID_RBS"@en ; sybio:NA "GATGAAAGGAGGATATGAAC"^^xsd:string ; @@ -33482,27 +33482,6 @@ bo:28129 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31381 ; tawny:name "28129"@en . - - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; - rdfs:comment "Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate)."@en ; - rdfs:label "GO:0031177"@en , "phosphopantetheine binding"@en ; - rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031177"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - -bo:16634 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; - rdfs:label "TDPX"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16635 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; - tawny:name "16634"@en . - bo:4981 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "kinA_terminator"@en ; sybio:NA "AATAAAAACAACGGCTTAAACGCCGTTGTTTATCGTCTGCATT"^^xsd:string ; @@ -33525,6 +33504,27 @@ bo:28217 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31809 ; tawny:name "28217"@en . + + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; + rdfs:comment "Interacting selectizely with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate)."@en ; + rdfs:label "GO:0031177"@en , "phosphopantetheine binding"@en ; + rdfs:subClassOf , sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0031177"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + +bo:16634 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; + rdfs:label "TDPX"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16635 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; + tawny:name "16634"@en . + bo:16722 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "glucan endo-1,3-beta-D-glucosidase [EC:3.2.1.39]"@en ; rdfs:label "E3.2.1.39"@en ; @@ -33789,17 +33789,6 @@ bo:17463 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11945"@en ; tawny:name "17463"@en . -bo:574 a owl:Class ; - rdfs:label "COG0053"@en ; - rdfs:subClassOf bo:354 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0053"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "574"@en . - bo:29046 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU28270"@en , "3-isopropylmalate dehydrogenase (EC:1.1.1.85)"@en ; rdfs:label "leuB"@en , "BSU28270"@en ; @@ -33838,6 +33827,17 @@ bo:1306 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1306"@en . +bo:574 a owl:Class ; + rdfs:label "COG0053"@en ; + rdfs:subClassOf bo:354 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0053"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "574"@en . + bo:17551 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "malate-CoA ligase [EC:6.2.1.9]"@en ; rdfs:label "E6.2.1.9"@en ; @@ -33877,17 +33877,6 @@ bo:662 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "662"@en . -bo:23497 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "NAD+ (see R01041) - reversible"@en ; - rdfs:label "NADP+ oxidoreductase"@en , "C00116 + C00006 <=> C00577 + C00005 + C00080"@en , "Glycerol"@en , "cpd:C00116 <=> cpd:C00116"@en ; - sybio:accession "RN:R01041"^^xsd:string ; - sybio:catalyzedBy bo:14758 , bo:14674 ; - sybio:catalyzingClass bo:23498 , bo:20562 , bo:20435 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11660 ; - tawny:name "23497"@en . - bo:29222 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01580;"@en ; rdfs:label "ybaR"@en , "BSU01580"@en ; @@ -33913,6 +33902,17 @@ bo:29222 a sybio:CDS , owl:NamedIndividual ; "24.0"@en ; tawny:name "29222"@en . +bo:23497 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "NAD+ (see R01041) - reversible"@en ; + rdfs:label "NADP+ oxidoreductase"@en , "C00116 + C00006 <=> C00577 + C00005 + C00080"@en , "Glycerol"@en , "cpd:C00116 <=> cpd:C00116"@en ; + sybio:accession "RN:R01041"^^xsd:string ; + sybio:catalyzedBy bo:14758 , bo:14674 ; + sybio:catalyzingClass bo:23498 , bo:20562 , bo:20435 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11660 ; + tawny:name "23497"@en . + bo:750 a owl:Class ; rdfs:label "COG2258"@en ; rdfs:subClassOf bo:176 , sybio:COG ; @@ -34231,7 +34231,7 @@ bo:17338 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "UGCG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008120"^^xsd:string ; + owl:hasValue "GT21"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -34239,7 +34239,7 @@ bo:17338 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT21"^^xsd:string ; + owl:hasValue "0008120"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -34331,7 +34331,7 @@ bo:537 a owl:Class ; rdfs:label "ribulose 1 5-bisphosphate carboxylase"@en , "ribulose diphosphate carboxylase"@en , "ribulose 1 5-diphosphate carboxylase oxygenase"@en , "D-ribulose-1 5-bisphosphate carboxylase"@en , "diphosphoribulose carboxylase"@en , "RuBP carboxylase"@en , "ribulose diphosphate carboxylase oxygenase"@en , "D-ribulose 1 5-diphosphate carboxylase"@en , "ribulose 1 5-diphosphate carboxylase"@en , "carboxydismutase"@en , "3-phospho-D-glycerate carboxy-lyase"@en , "RuBisCO"@en , "GO:0016984"@en , "rubisco"@en , "ribulose 1 5-bisphosphate carboxylase oxygenase"@en , "ribulose-bisphosphate carboxylase"@en , "ribulose bisphosphate carboxylase oxygenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN"^^xsd:string ; + owl:hasValue "GO:0016984"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -34339,7 +34339,7 @@ bo:537 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016984"^^xsd:string ; + owl:hasValue "RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -34427,7 +34427,7 @@ bo:801 a owl:Class ; rdfs:label "GO:0047631"@en , "ADPR-PPase"@en , "adenosine diphosphoribose pyrophosphatase"@en , "ADP-ribose ribophosphohydrolase"@en , "ADP-ribose diphosphatase"@en , "ADP-ribose pyrophosphatase"@en , "ADPribose diphosphatase"@en , "ADP-ribose phosphohydrolase"@en , "ADPribose pyrophosphatase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047631"^^xsd:string ; + owl:hasValue "RXN0-1441"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -34435,7 +34435,7 @@ bo:801 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-1441"^^xsd:string ; + owl:hasValue "GO:0047631"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -34700,11 +34700,11 @@ bo:18343 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "NRFA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3303"^^xsd:string ; + owl:hasValue "0042279"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0042279"^^xsd:string ; + owl:hasValue "COG3303"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -35025,6 +35025,18 @@ bo:25294 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25294"@en . +bo:25382 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.99.10"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.99.10"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25382"@en . + bo:10072 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized lipoprotein ydeJ"@en , "putative lipoprotein;BSU05220;"@en ; rdfs:label "YdeJ"@en , "BSU05220"@en , "ydeJ"@en ; @@ -35041,18 +35053,6 @@ bo:10072 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10072"@en . -bo:25382 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.99.10"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.99.10"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25382"@en . - bo:6389 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yitE"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -35061,6 +35061,16 @@ bo:6389 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yitE"@en ; tawny:name "6389"@en . +bo:25470 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C07208 + C00340 + C00007 <=> C07216 + C00435 + C00001"@en , "cpd:C07208 <=> cpd:C07208"@en ; + sybio:accession "RN:R05491"^^xsd:string ; + sybio:catalyzingClass bo:25225 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25470"@en . + bo:10160 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndividual ; rdfs:comment "BSU18320;plipastatin synthetase"@en , "Plipastatin synthetase subunit C;PpsC plipastatin synthetase"@en ; rdfs:label "ppsC"@en , "PpsC"@en , "BSU18320"@en ; @@ -35079,16 +35089,6 @@ bo:10160 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndi sybio:taxId "224308"@en ; tawny:name "10160"@en . -bo:25470 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C07208 + C00340 + C00007 <=> C07216 + C00435 + C00001"@en , "cpd:C07208 <=> cpd:C07208"@en ; - sybio:accession "RN:R05491"^^xsd:string ; - sybio:catalyzingClass bo:25225 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25470"@en . - bo:6477 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yndL"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -35346,16 +35346,6 @@ bo:31468 a owl:NamedIndividual , sybio:CDS ; "107.0"@en ; tawny:name "31468"@en . -bo:27978 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "yceC_RBS"@en ; - sybio:NA "GATGAGTAGGAGTGAATCGT"^^xsd:string ; - sybio:begin "312139"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "312158"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30796 ; - tawny:name "27978"@en . - bo:12668 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C8H8O4"@en ; rdfs:label "3,4-Dihydroxymandelaldehyde"@en , "C8H8O4"@en ; @@ -35367,6 +35357,16 @@ bo:12668 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05577"@en ; tawny:name "12668"@en . +bo:27978 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "yceC_RBS"@en ; + sybio:NA "GATGAGTAGGAGTGAATCGT"^^xsd:string ; + sybio:begin "312139"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "312158"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30796 ; + tawny:name "27978"@en . + bo:19047 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-Pphosphatase) [EC:3.1.3.45]"@en ; rdfs:label "KDSC"@en ; @@ -36145,11 +36145,11 @@ bo:14590 a sybio:Compound , owl:NamedIndividual ; rdfs:label "enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA"@en , "GO:0043754"@en , "activity"@en , "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase"@en , "dihydrolipoyl transacylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043754"^^xsd:string ; + owl:hasValue "2.3.1.168"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.168"^^xsd:string ; + owl:hasValue "GO:0043754"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -36191,6 +36191,16 @@ bo:32348 a sybio:CDS , owl:NamedIndividual ; "514.0"@en ; tawny:name "32348"@en . +bo:13548 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C7H8"@en ; + rdfs:label "Methylbenzene"@en , "Toluene"@en , "Toluol"@en , "C7H8"@en ; + sybio:accession "4632"^^xsd:string , "17578"^^xsd:string , "C01455"^^xsd:string , "108-88-3"^^xsd:string , "B00293"^^xsd:string ; + sybio:consumedBy bo:25956 , bo:24230 , bo:26106 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01455"@en ; + tawny:name "13548"@en . + bo:28858 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU37290;;"@en ; rdfs:label "BSU37290"@en , "arfM"@en , "ywiD"@en ; @@ -36223,16 +36233,6 @@ bo:28858 a sybio:CDS , owl:NamedIndividual ; "1.0"@en ; tawny:name "28858"@en . -bo:13548 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C7H8"@en ; - rdfs:label "Methylbenzene"@en , "Toluene"@en , "Toluol"@en , "C7H8"@en ; - sybio:accession "4632"^^xsd:string , "17578"^^xsd:string , "C01455"^^xsd:string , "108-88-3"^^xsd:string , "B00293"^^xsd:string ; - sybio:consumedBy bo:25956 , bo:24230 , bo:26106 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01455"@en ; - tawny:name "13548"@en . - bo:32436 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU12100;"@en ; rdfs:label "yjeA"@en , "BSU12100"@en ; @@ -36304,7 +36304,7 @@ bo:13636 a sybio:Compound , owl:NamedIndividual ; rdfs:label "proteasome endopeptidase regulator"@en , "GO:0004175"@en , "endopeptidase"@en , "proteinase"@en , "proteasome endopeptidase"@en , "endoprotease"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1793 \"endopeptidase activity\""^^xsd:string ; + owl:hasValue "GO:0016809"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -36312,7 +36312,7 @@ bo:13636 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016809"^^xsd:string ; + owl:hasValue "1793 \"endopeptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -36888,15 +36888,15 @@ bo:28909 a owl:NamedIndividual , sybio:CDS ; rdfs:label "kinase"@en , "NTP-deoxyguanosine 5'-phosphotransferase"@en , "GO:0004138"@en , "2'-deoxyguanosine kinase"@en , "ATP:deoxyguanosine 5'-phosphotransferase"@en , "deoxyguanosine kinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.113"^^xsd:string ; + owl:hasValue "DEOXYGUANOSINE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DEOXYGUANOSINE-KINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004138"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004138"^^xsd:string ; + owl:hasValue "2.7.1.113"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -36940,7 +36940,7 @@ bo:2688 a sybio:ConstitutiveSigAPromoter , sybio:SigAProm owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.39"^^xsd:string ; + owl:hasValue "10341 \"[acyl-carrier-protein] S-malonyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -36948,7 +36948,7 @@ bo:2688 a sybio:ConstitutiveSigAPromoter , sybio:SigAProm owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10341 \"[acyl-carrier-protein] S-malonyltransferase activity\""^^xsd:string ; + owl:hasValue "2.3.1.39"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -37000,11 +37000,11 @@ bo:15382 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GPPA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0248"^^xsd:string ; + owl:hasValue "0008894"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008894"^^xsd:string ; + owl:hasValue "COG0248"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -37412,11 +37412,11 @@ bo:15169 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "UBIC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3161"^^xsd:string ; + owl:hasValue "0008813"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008813"^^xsd:string ; + owl:hasValue "COG3161"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -37559,6 +37559,16 @@ bo:16351 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04103"@en ; tawny:name "16351"@en . +bo:28022 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "sspF_RBS"@en ; + sybio:NA "TAAAAAAGGAGTTGTTTCGT"^^xsd:string ; + sybio:begin "53163"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "53182"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30843 ; + tawny:name "28022"@en . + bo:22297 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "Phosphoribosyl-ATP pyrophosphohydrolase"@en , "C02739 + C00001 <=> C02741 + C00013"@en , "cpd:C02739 => cpd:C02739"@en ; @@ -37570,16 +37580,6 @@ bo:22297 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 , bo:11605 ; tawny:name "22297"@en . -bo:28022 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "sspF_RBS"@en ; - sybio:NA "TAAAAAAGGAGTTGTTTCGT"^^xsd:string ; - sybio:begin "53163"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "53182"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30843 ; - tawny:name "28022"@en . - bo:9029 a sybio:Protein , owl:NamedIndividual , bo:626 ; rdfs:comment "BSU36600;transcriptional regulator (MerR family);"@en , "HTH-type transcriptional activator mta"@en ; rdfs:label "Mta"@en , "YwnD"@en , "mta"@en , "BSU36600"@en ; @@ -37599,6 +37599,16 @@ bo:9029 a sybio:Protein , owl:NamedIndividual , bo:626 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9029"@en . +bo:28110 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "cotV_RBS"@en ; + sybio:NA "AAGAAAGGAGTGAAGGTT"^^xsd:string ; + sybio:begin "1252035"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1252018"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31271 ; + tawny:name "28110"@en . + bo:22385 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C00628 => cpd:C00628"@en , "Gentisate"@en , "oxygen 1,2-oxidoreductase (decyclizing)"@en , "C00628 + C00007 <=> C02167"@en ; @@ -37610,16 +37620,6 @@ bo:22385 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 , bo:11607 ; tawny:name "22385"@en . -bo:28110 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "cotV_RBS"@en ; - sybio:NA "AAGAAAGGAGTGAAGGTT"^^xsd:string ; - sybio:begin "1252035"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1252018"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31271 ; - tawny:name "28110"@en . - bo:9117 a sybio:Protein , owl:NamedIndividual , bo:366 ; rdfs:comment "exported N-acetylmuramic acid deacetylase;BSU07980;"@en , "Probable polysaccharide deacetylase pdaA"@en ; rdfs:label "pdaA"@en , "YfjS"@en , "PdaA"@en , "BSU07980"@en ; @@ -37827,27 +37827,27 @@ bo:17180 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019"@en ; tawny:name "17180"@en . -bo:291 a owl:Class ; - rdfs:label "COG4956"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:1023 a owl:Class ; + rdfs:label "COG1207"@en ; + rdfs:subClassOf bo:189 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4956"^^xsd:string ; + owl:hasValue "COG1207"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "291"@en . + tawny:name "1023"@en . -bo:1023 a owl:Class ; - rdfs:label "COG1207"@en ; - rdfs:subClassOf bo:189 , sybio:COG ; +bo:291 a owl:Class ; + rdfs:label "COG4956"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1207"^^xsd:string ; + owl:hasValue "COG4956"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1023"@en . + tawny:name "291"@en . bo:18859 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "phosphatidylinositol glycan, class A [EC:2.4.1.198]"@en ; @@ -37925,6 +37925,18 @@ bo:4485 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yclM"@en ; tawny:name "4485"@en . +bo:4573 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "ydhK_terminator"@en ; + sybio:NA "AAAAATCCTCCTTTTACAAGGAGGATTTTTTTGCTGTTTG"^^xsd:string ; + sybio:annotatedSequence "AAAAA{left}TCCTCCTT{/left}TTAC{right}AAGGAGGA{/right}TTTTTTTGCTGTTTG"@en ; + sybio:begin "625112"@en ; + sybio:deltaGo "-13.2"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "625151"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4572 ; + tawny:name "4573"@en . + a owl:Class ; rdfs:comment "The directed movement of ammonium into, out of, within or between cells by means of some external agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals."@en ; @@ -37946,18 +37958,6 @@ bo:16226 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01857"@en ; tawny:name "16226"@en . -bo:4573 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "ydhK_terminator"@en ; - sybio:NA "AAAAATCCTCCTTTTACAAGGAGGATTTTTTTGCTGTTTG"^^xsd:string ; - sybio:annotatedSequence "AAAAA{left}TCCTCCTT{/left}TTAC{right}AAGGAGGA{/right}TTTTTTTGCTGTTTG"@en ; - sybio:begin "625112"@en ; - sybio:deltaGo "-13.2"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "625151"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4572 ; - tawny:name "4573"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol."@en ; @@ -37970,6 +37970,14 @@ bo:4573 a owl:NamedIndividual , sybio:Terminator ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4661 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "citM-yflN"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31048 , bo:28601 ; + sybio:operonGenes "citM,yflN"@en ; + tawny:name "4661"@en . + bo:16314 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "kynureninase [EC:3.7.1.3]"@en ; rdfs:label "E3.7.1.3"@en ; @@ -37980,24 +37988,16 @@ bo:16314 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01556"@en ; tawny:name "16314"@en . -bo:4661 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "citM-yflN"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31048 , bo:28601 ; - sybio:operonGenes "citM,yflN"@en ; - tawny:name "4661"@en . - bo:16402 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "prephenate dehydrogenase (NADP+) [EC:1.3.1.13]"@en ; rdfs:label "TYR1"@en , "E1.3.1.13"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0287"^^xsd:string ; + owl:hasValue "0004665"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004665"^^xsd:string ; + owl:hasValue "COG0287"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -38161,6 +38161,16 @@ bo:19952 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19952"@en . +bo:25898 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C05247 <=> cpd:C05247"@en , "C00019 + C05247 <=> C00021 + C05194 + C00080"@en , "S-Adenosyl-L-methionine"@en , "10-hydroxydihydrosanguinarine10-O-methyltransferase"@en ; + sybio:accession "RN:R04707"^^xsd:string ; + sybio:catalyzingClass bo:25899 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25898"@en . + bo:10588 a owl:NamedIndividual , bo:568 , sybio:Protein , bo:1859 ; rdfs:comment "Bacilysin biosynthesis protein bacB;Bacillorin synthetase B"@en , "BSU37730;isomerase component of bacilysin synthetase;"@en ; rdfs:label "BSU37730"@en , "Ipa-81d"@en , "YwfC"@en , "BacB"@en , "bacB"@en ; @@ -38178,15 +38188,16 @@ bo:10588 a owl:NamedIndividual , bo:568 , sybio:Protein , sybio:taxId "224308"@en ; tawny:name "10588"@en . -bo:25898 a sybio:Reaction , owl:NamedIndividual ; +bo:25986 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; - rdfs:label "cpd:C05247 <=> cpd:C05247"@en , "C00019 + C05247 <=> C00021 + C05194 + C00080"@en , "S-Adenosyl-L-methionine"@en , "10-hydroxydihydrosanguinarine10-O-methyltransferase"@en ; - sybio:accession "RN:R04707"^^xsd:string ; - sybio:catalyzingClass bo:25899 ; + rdfs:label "1-alkyl-2-acylglycerolethanolaminephosphotransferase"@en , "CDPethanolamine"@en , "cpd:C03201 <=> cpd:C03201"@en , "C00570 + C03201 <=> C00055 + C04475"@en ; + sybio:accession "RN:R06364"^^xsd:string ; + sybio:catalyzedBy bo:16561 ; + sybio:catalyzingClass bo:23015 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25898"@en . + tawny:name "25986"@en . bo:10676 a sybio:Protein , owl:NamedIndividual , bo:385 ; rdfs:comment "BSU40290;putative N-acetyltransferase"@en , "Uncharacterized N-acetyltransferase yycN;"@en ; @@ -38205,17 +38216,6 @@ bo:10676 a sybio:Protein , owl:NamedIndividual , bo:385 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10676"@en . -bo:25986 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "1-alkyl-2-acylglycerolethanolaminephosphotransferase"@en , "CDPethanolamine"@en , "cpd:C03201 <=> cpd:C03201"@en , "C00570 + C03201 <=> C00055 + C04475"@en ; - sybio:accession "RN:R06364"^^xsd:string ; - sybio:catalyzedBy bo:16561 ; - sybio:catalyzingClass bo:23015 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25986"@en . - bo:17055 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "phosphatidylinositol-3-phosphatase [EC:3.1.3.64]"@en ; rdfs:label "E3.1.3.64"@en ; @@ -38496,22 +38496,6 @@ bo:11593 a sybio:Pathway , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "11593"@en . -bo:11681 a owl:Class , owl:NamedIndividual , sybio:Pathway ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00626.png"@en ; - rdfs:label "Naphthalene and anthracene degradation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00626"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11679 , bo:11614 ; - sybio:derivesFrom bo:11682 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00626"@en ; - tawny:name "11681"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms."@en ; @@ -38569,6 +38553,22 @@ bo:26991 a owl:NamedIndividual , sybio:Protein , bo:893 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26991"@en . +bo:11681 a owl:Class , owl:NamedIndividual , sybio:Pathway ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00626.png"@en ; + rdfs:label "Naphthalene and anthracene degradation"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00626"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11679 , bo:11614 ; + sybio:derivesFrom bo:11682 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00626"@en ; + tawny:name "11681"@en . + bo:18060 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "phytochromobilin:ferredoxin oxidoreductase [EC:1.3.7.4]"@en ; rdfs:label "E1.3.7.4"@en ; @@ -38585,11 +38585,11 @@ bo:18060 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "plastid"@en , "GO:0009536"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Plastid"^^xsd:string ; + owl:hasValue "GO:0009536"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009536"^^xsd:string ; + owl:hasValue "Plastid"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -38601,11 +38601,11 @@ bo:18060 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "nucleoside-triphosphate:RNA nucleotidyltransferase"@en , "RNA polymerase I"@en , "RNA polymerase II"@en , "transcriptase"@en , "DNA-directed RNA polymerase"@en , "DNA-directed RNA polymerase III"@en , "GO:0003899"@en , "DNA-dependent RNA polymerase"@en , "deoxyribonucleic acid-dependent ribonucleic acid polymerase"@en , "DNA-directed RNA polymerase I"@en , "DNA-dependent RNA nucleotidyltransferase"@en , "C RNA formation factors"@en , "RNA polymerase III"@en , "C ribonucleic acid formation factors"@en , "DNA-directed RNA polymerase II"@en , "DNA-dependent ribonucleate nucleotidyltransferase"@en , "RNA nucleotidyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003899"^^xsd:string ; + owl:hasValue "GO:0000129"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA-DIRECTED-RNA-POLYMERASE-RXN"^^xsd:string ; + owl:hasValue "11745 \"DNA-directed RNA polymerase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -38613,11 +38613,11 @@ bo:18060 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11745 \"DNA-directed RNA polymerase activity\""^^xsd:string ; + owl:hasValue "DNA-DIRECTED-RNA-POLYMERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000129"^^xsd:string ; + owl:hasValue "GO:0003899"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -38650,11 +38650,11 @@ bo:24094 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "acetyl coenzyme A synthetase"@en , "acetyl activating enzyme"@en , "short-chain acyl-coenzyme A synthetase"@en , "GO:0003987"@en , "acyl-activating enzyme"@en , "acetate to acetyl-CoA"@en , "acetate thiokinase"@en , "short chain fatty acyl-CoA synthetase"@en , "acetyl-activating enzyme"@en , "ACS"@en , "acetyl-CoA synthetase"@en , "acetyl CoA synthase"@en , "acetate:CoA ligase"@en , "acetate-CoA ligase"@en , "acetyl-coenzyme A synthase"@en , "acetyl-CoA synthase"@en , "acetyl CoA ligase"@en , "acetic thiokinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETATE--COA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "6.2.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.2.1.1"^^xsd:string ; + owl:hasValue "ACETATE--COA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -38984,24 +38984,6 @@ bo:30268 a sybio:CDS , owl:NamedIndividual ; "14.0"@en ; tawny:name "30268"@en . -bo:11468 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU09940;sporulation factor"@en , "Sporulation protein yhaL"@en ; - rdfs:label "BSU09940"@en , "YhaL"@en , "yhaL"@en ; - sybio:AA "VLFFPWWVYLCIVGIIFSAYKLVAAAKEEEKVDQAFIEKEGQIYMERMEKERERRSSQQHEEENQNHSIA"@en ; - sybio:accession "BSU09940"^^xsd:string , "O07520"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32268 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "8407.245"^^xsd:string ; - sybio:pI "5.114082"^^xsd:string ; - sybio:productType "ph : phenotype"^^xsd:string ; - sybio:relatedTo bo:7033 , bo:9595 , bo:9095 , bo:9750 , bo:11542 , bo:11152 , bo:7047 , bo:9045 , bo:9600 , bo:6767 , bo:9610 , bo:11126 , bo:9700 , bo:9034 , bo:11482 , bo:11056 , bo:9579 , bo:6770 , bo:11501 , bo:10944 , bo:6905 , bo:7020 , bo:6811 , bo:9272 , bo:11125 , bo:6984 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11468"@en . - bo:26778 a sybio:Protein , bo:1806 , owl:NamedIndividual ; rdfs:comment "BSU35930;ribose ABC transporter (membrane bound ribose binding);"@en , "D-ribose pyranase;derived protein"@en ; rdfs:label "BSU35930"@en , "rbsD"@en , "RbsD"@en ; @@ -39024,6 +39006,24 @@ bo:26778 a sybio:Protein , bo:1806 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26778"@en . +bo:11468 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU09940;sporulation factor"@en , "Sporulation protein yhaL"@en ; + rdfs:label "BSU09940"@en , "YhaL"@en , "yhaL"@en ; + sybio:AA "VLFFPWWVYLCIVGIIFSAYKLVAAAKEEEKVDQAFIEKEGQIYMERMEKERERRSSQQHEEENQNHSIA"@en ; + sybio:accession "BSU09940"^^xsd:string , "O07520"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32268 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "8407.245"^^xsd:string ; + sybio:pI "5.114082"^^xsd:string ; + sybio:productType "ph : phenotype"^^xsd:string ; + sybio:relatedTo bo:7033 , bo:9595 , bo:9095 , bo:9750 , bo:11542 , bo:11152 , bo:7047 , bo:9045 , bo:9600 , bo:6767 , bo:9610 , bo:11126 , bo:9700 , bo:9034 , bo:11482 , bo:11056 , bo:9579 , bo:6770 , bo:11501 , bo:10944 , bo:6905 , bo:7020 , bo:6811 , bo:9272 , bo:11125 , bo:6984 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11468"@en . + bo:6194 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "hut_terminator2"@en ; sybio:NA "GATAGGGGGCTATGCGTGAAAACAGAAGTTCACAGCATAGCTCCTTTTTGTATGGGCGC"^^xsd:string ; @@ -39061,17 +39061,6 @@ bo:30356 a owl:NamedIndividual , sybio:CDS ; "74.0"@en ; tawny:name "30356"@en . -bo:11556 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00051"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00051"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11556"@en . - bo:26866 a owl:NamedIndividual , bo:1907 , sybio:Protein ; rdfs:comment "Fructose-1,6-bisphosphatase class 3;;derived protein"@en , "fructose-1,6-bisphosphatase;BSU40190;"@en ; rdfs:label "Fbp"@en , "fbp"@en , "BSU40190"@en , "YydE"@en , "Fdp"@en ; @@ -39091,6 +39080,17 @@ bo:26866 a owl:NamedIndividual , bo:1907 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26866"@en . +bo:11556 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00051"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00051"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11556"@en . + bo:6282 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yycCB_terminator"@en ; sybio:NA "ATAAAGCGGGGAAGATATCTCCGCTTTTTTCTTTGAATA"^^xsd:string ; @@ -39345,11 +39345,11 @@ bo:5416 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "GO:0016627"@en , "oxidoreductase activity acting on the CH-CH group of donors other acceptors"@en , "oxidoreductase activity, acting on the CH-CH group of donors"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016627"^^xsd:string ; + owl:hasValue "1.3.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.-.-"^^xsd:string ; + owl:hasValue "GO:0016627"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -39630,25 +39630,6 @@ bo:30319 a sybio:CDS , owl:NamedIndividual ; "71.0"@en ; tawny:name "30319"@en . -bo:26829 a owl:NamedIndividual , sybio:Protein , bo:927 , bo:510 ; - rdfs:comment "Thiamine-phosphate pyrophosphorylase;;derived protein"@en , "BSU38290;thiamine-phosphate pyrophosphorylase"@en ; - rdfs:label "thiE"@en , "Ipa-26d"@en , "BSU38290"@en , "ThiE"@en , "YwbK"@en ; - sybio:AA "MTRISREMMKELLSVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR"@en ; - sybio:accession "BSU38290"^^xsd:string , "P39594"^^xsd:string , "937316"^^xsd:string , "16080880"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32579 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "23679.975"^^xsd:string ; - sybio:pI "5.240868"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26830 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26829"@en . - bo:11519 a bo:280 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "putative DNA helicase / endonuclease;BSU06770;"@en , "Putative ATP-dependent helicase yeeB"@en ; rdfs:label "BSU06770"@en , "yeeB"@en , "YeeB"@en ; @@ -39668,6 +39649,25 @@ bo:11519 a bo:280 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11519"@en . +bo:26829 a owl:NamedIndividual , sybio:Protein , bo:927 , bo:510 ; + rdfs:comment "Thiamine-phosphate pyrophosphorylase;;derived protein"@en , "BSU38290;thiamine-phosphate pyrophosphorylase"@en ; + rdfs:label "thiE"@en , "Ipa-26d"@en , "BSU38290"@en , "ThiE"@en , "YwbK"@en ; + sybio:AA "MTRISREMMKELLSVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR"@en ; + sybio:accession "BSU38290"^^xsd:string , "P39594"^^xsd:string , "937316"^^xsd:string , "16080880"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32579 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "23679.975"^^xsd:string ; + sybio:pI "5.240868"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26830 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26829"@en . + bo:6245 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yxaAB"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -39891,15 +39891,15 @@ bo:31148 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005961"^^xsd:string ; + owl:hasValue "GO:0070015"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0070015"^^xsd:string ; + owl:hasValue "Glycine_decarboxylase_complex"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Glycine_decarboxylase_complex"^^xsd:string ; + owl:hasValue "GO:0005961"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -40456,11 +40456,11 @@ bo:13441 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031180"^^xsd:string ; + owl:hasValue "GO:0019290"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019290"^^xsd:string ; + owl:hasValue "GO:0031180"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -40737,11 +40737,11 @@ bo:15949 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E5.1.1.8"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047580"^^xsd:string ; + owl:hasValue "COG3938"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3938"^^xsd:string ; + owl:hasValue "0047580"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -41729,11 +41729,11 @@ bo:3285 a sybio:Promoter , sybio:SigGPromoter , owl:Named rdfs:label "glycerol 3-phosphate dehydrogenase"@en , "glycerol-3-phosphate dehydrogenase"@en , "oxidoreductase"@en , "glycerol phosphate dehydrogenase"@en , "glycerol-3-phosphate dehydrogenase [NAD(P)+]"@en , "GO:0047952"@en , "2-oxidoreductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.94"^^xsd:string ; + owl:hasValue "GLYC3PDEHYDROGBIOSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYC3PDEHYDROGBIOSYN-RXN"^^xsd:string ; + owl:hasValue "1.1.1.94"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -41912,11 +41912,11 @@ bo:18664 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004582"^^xsd:string ; + owl:hasValue "COG0463"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0463"^^xsd:string ; + owl:hasValue "0004582"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -42075,25 +42075,13 @@ bo:909 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "909"@en . -bo:22153 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "cpd:C00179 => cpd:C00179"@en , "C00179 + C00001 <=> C00134 + C00086"@en , "Agmatine amidinohydrolase"@en ; - sybio:accession "RN:R01157"^^xsd:string ; - sybio:catalyzedBy bo:20258 ; - sybio:catalyzingClass bo:20259 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11603 ; - sybio:sharesIntermediate bo:11787 ; - tawny:name "22153"@en . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: cephalosporin C + H2O = deacetylcephalosporin C + acetate."@en ; rdfs:label "cephalosporin-C deacetylase"@en , "cephalosporin C acetylesterase"@en , "cephalosporin C acetyl-esterase"@en , "cephalosporin acetylesterase"@en , "cephalosporin C acetylase"@en , "cephalosporin-C acetylhydrolase"@en , "cephalosporin C deacetylase"@en , "cephalosporin C acetyl-hydrolase"@en , "GO:0047739"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CEPHALOSPORIN-C-DEACETYLASE-RXN"^^xsd:string ; + owl:hasValue "3.1.1.41"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -42101,12 +42089,24 @@ bo:22153 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.41"^^xsd:string ; + owl:hasValue "CEPHALOSPORIN-C-DEACETYLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:22153 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "cpd:C00179 => cpd:C00179"@en , "C00179 + C00001 <=> C00134 + C00086"@en , "Agmatine amidinohydrolase"@en ; + sybio:accession "RN:R01157"^^xsd:string ; + sybio:catalyzedBy bo:20258 ; + sybio:catalyzingClass bo:20259 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11603 ; + sybio:sharesIntermediate bo:11787 ; + tawny:name "22153"@en . + bo:22241 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.5.3.23"@en ; @@ -42245,6 +42245,17 @@ bo:10393 a sybio:Protein , owl:NamedIndividual , bo:474 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10393"@en . +bo:25791 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C02124 <=> cpd:C02124"@en , "C02124 + C00007 + C00005 + C00080 <=> C02375 + C00006 + C00001"@en ; + sybio:accession "RN:R05441"^^xsd:string ; + sybio:catalyzedBy bo:18589 ; + sybio:catalyzingClass bo:25792 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25791"@en . + bo:10481 a sybio:Protein , bo:963 , owl:NamedIndividual ; rdfs:comment "HtrA-like serine protease;BSU33000"@en , "Uncharacterized serine protease yvtA"@en ; rdfs:label "YvtA"@en , "YvtB"@en , "yvtA"@en , "HtrB"@en , "BSU33000"@en ; @@ -42264,17 +42275,6 @@ bo:10481 a sybio:Protein , bo:963 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10481"@en . -bo:25791 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C02124 <=> cpd:C02124"@en , "C02124 + C00007 + C00005 + C00080 <=> C02375 + C00006 + C00001"@en ; - sybio:accession "RN:R05441"^^xsd:string ; - sybio:catalyzedBy bo:18589 ; - sybio:catalyzingClass bo:25792 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25791"@en . - bo:6798 a owl:NamedIndividual , sybio:Protein , bo:1858 ; rdfs:comment "putative oxidoreductase/oxygenase/dismutase;BSU37670"@en ; rdfs:label "BSU37670"@en , "Ipa-87r"@en , "YwfI"@en ; @@ -42481,11 +42481,11 @@ bo:24925 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "GO:0000154"@en , "rRNA editing"@en , "rRNA modification"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016548"^^xsd:string ; + owl:hasValue "GO:0000154"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000154"^^xsd:string ; + owl:hasValue "GO:0016548"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -42600,11 +42600,11 @@ bo:19368 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "peptidoglycan degradation"@en , "murein catabolic process"@en , "GO:0009253"@en , "peptidoglycan catabolic process"@en , "peptidoglycan breakdown"@en , "peptidoglycan catabolism"@en , "murein catabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009253"^^xsd:string ; + owl:hasValue "GO:0009286"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009286"^^xsd:string ; + owl:hasValue "GO:0009253"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -42710,24 +42710,6 @@ bo:19632 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19632"@en . -bo:10268 a sybio:Protein , bo:655 , owl:NamedIndividual ; - rdfs:comment "putative membrane protease;BSU23010;"@en , "Uncharacterized protein ypbD"@en ; - rdfs:label "ypbD"@en , "YpbD"@en , "BSU23010"@en ; - sybio:AA "LTQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVFACQIRFEHVRRDKHDEHVESREKKSPESL"@en ; - sybio:accession "P50730"^^xsd:string , "BSU23010"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30138 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "6 : No similarity"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "21962.27"^^xsd:string ; - sybio:pI "7.267937"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10268"@en . - bo:19720 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "2.2.1.1"@en ; @@ -42752,6 +42734,35 @@ bo:25578 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25578"@en . +bo:10268 a sybio:Protein , bo:655 , owl:NamedIndividual ; + rdfs:comment "putative membrane protease;BSU23010;"@en , "Uncharacterized protein ypbD"@en ; + rdfs:label "ypbD"@en , "YpbD"@en , "BSU23010"@en ; + sybio:AA "LTQLLIIFAAAAAGLFFFEDVRDVLKLWDIRDMRIIWYGVSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEMLFRGVLQTHIGLWTASLIFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHFIIDAVFACQIRFEHVRRDKHDEHVESREKKSPESL"@en ; + sybio:accession "P50730"^^xsd:string , "BSU23010"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30138 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "6 : No similarity"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "21962.27"^^xsd:string ; + sybio:pI "7.267937"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10268"@en . + +bo:25666 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G00154 <=> gl:G00154"@en , "G10609 + G00154 <=> G10619 + G00155"@en ; + sybio:accession "RN:R05926"^^xsd:string ; + sybio:catalyzedBy bo:19000 ; + sybio:catalyzingClass bo:25667 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25666"@en . + bo:10356 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized membrane protein yrrS"@en , "conserved hypothetical protein;BSU27300"@en ; rdfs:label "BSU27300"@en , "yrrS"@en , "YrrS"@en ; @@ -42769,17 +42780,6 @@ bo:10356 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10356"@en . -bo:25666 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G00154 <=> gl:G00154"@en , "G10609 + G00154 <=> G10619 + G00155"@en ; - sybio:accession "RN:R05926"^^xsd:string ; - sybio:catalyzedBy bo:19000 ; - sybio:catalyzingClass bo:25667 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25666"@en . - bo:5082 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "cwlC_terminator"@en ; sybio:NA "AAAAACCCGGCTCCTCATCGCGAGAAACCGGGTTTTTTTATTCAAGA"^^xsd:string ; @@ -43090,23 +43090,6 @@ bo:11097 a sybio:Protein , bo:1517 , bo:1076 , owl:NamedIn sybio:taxId "[224308, 1423]"@en ; tawny:name "11097"@en . -bo:11185 a bo:1909 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Ribosomal RNA large subunit methyltransferase H"@en , "BSU40230;conserved hypothetical protein"@en ; - rdfs:label "YydA"@en , "rlmH"@en , "BSU40230"@en ; - sybio:AA "VNINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK"@en ; - sybio:accession "Q45601"^^xsd:string , "BSU40230"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30666 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "18040.31"^^xsd:string ; - sybio:pI "8.928749"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11185"@en . - bo:26495 a owl:NamedIndividual , bo:763 , bo:762 , sybio:Protein ; rdfs:comment "2-oxoisovalerate dehydrogenase subunit beta;derived protein"@en , "BSU24040;branched-chain alpha-keto acid dehydrogenase E1 subunit"@en ; rdfs:label "BfmBAB"@en , "BSU24040"@en , "BfmB1b"@en , "bkdAB"@en , "bfmBAB"@en , "BkdAB"@en ; @@ -43127,6 +43110,23 @@ bo:26495 a owl:NamedIndividual , bo:763 , bo:762 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26495"@en . +bo:11185 a bo:1909 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Ribosomal RNA large subunit methyltransferase H"@en , "BSU40230;conserved hypothetical protein"@en ; + rdfs:label "YydA"@en , "rlmH"@en , "BSU40230"@en ; + sybio:AA "VNINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK"@en ; + sybio:accession "Q45601"^^xsd:string , "BSU40230"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30666 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "18040.31"^^xsd:string ; + sybio:pI "8.928749"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11185"@en . + bo:30073 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21420"@en ; rdfs:label "yomB"@en , "bhlA"@en , "BSU21420"@en ; @@ -43152,27 +43152,6 @@ bo:30073 a sybio:CDS , owl:NamedIndividual ; "0.0"@en ; tawny:name "30073"@en . -bo:11273 a bo:321 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "ribosomal protein S10 (BS13);BSU01150"@en , "30S ribosomal protein S10"@en ; - rdfs:label "rpsJ"@en , "BSU01150"@en , "RpsJ"@en , "TetA"@en ; - sybio:AA "MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL"@en ; - sybio:accession "P21471"^^xsd:string , "BSU01150"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29186 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11269 , bo:11270 , bo:11272 , bo:11266 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "11665.195"^^xsd:string ; - sybio:pI "9.788902"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11284 , bo:9335 , bo:11280 , bo:11283 , bo:11278 , bo:11293 , bo:9765 , bo:11288 , bo:26902 , bo:11300 , bo:11307 , bo:11287 , bo:11306 , bo:11279 , bo:9360 , bo:11301 , bo:11277 , bo:9540 , bo:26796 , bo:11276 , bo:9165 , bo:11209 , bo:11286 , bo:9336 , bo:11281 , bo:9218 , bo:11291 , bo:11294 , bo:11290 , bo:11289 , bo:11275 , bo:11274 , bo:11299 , bo:9361 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11273"@en . - bo:26583 a sybio:Protein , bo:1573 , owl:NamedIndividual ; rdfs:comment "Alpha-N-arabinofuranosidase 1;derived protein"@en , "BSU28720;alpha-L-arabinofuranosidase"@en ; rdfs:label "abfA"@en , "AbfA"@en , "BSU28720"@en ; @@ -43192,24 +43171,26 @@ bo:26583 a sybio:Protein , bo:1573 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26583"@en . -bo:11361 a bo:512 , bo:513 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU03490;surfactin synthetase"@en , "Surfactin synthetase subunit 2;Recombinant surfactin/lichenysin A synthetase;SrfAB surfactin synthetase"@en ; - rdfs:label "SrfAB"@en , "srfAB"@en , "srfAB-lchAB"@en , "BSU03490"@en ; - sybio:AA "MSKKSIQKVYALTPMQEGMLYHAMLDPHSSSYFTQLELGIHGAFDLEIFEKSVNELIRSYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISHADENRQKEHIERYKQDVQRQGFNLAKDILFKVAVFRLAADQLYLVWSNHHIMMDGWSMGVLMKSLFQNYEALRAGRTPANGQGKPYSDYIKWLGKQDNEEAESYWSERLAGFEQPSVLPGRLPVKKDEYVNKEYSFTWDETLVARIQQTANLHQVTGPNLFQAVWGIVLSKYNFTDDVIFGTVVSGRPSEINGIETMAGLFINTIPVRVKVERDAAFADIFTAVQQHAVEAERYDYVPLYEIQKRSALDGNLLNHLVAFENYPLDQELENGSMEDRLGFSIKVESAFEQTSFDFNLIVYPGKTWTVKIKYNGAAFDSAFIERTAEHLTRMMEAAVDQPAAFVREYGLVGDEEQRQIVEVFNSTKAELPEGMAVHQVFEEQAKRTPASTAVVYEGTKLTYRELNAAANRLARKLVEHGLQKGETAAIMNDRSVETVVGMLAVLKAGAAYVPLDPALPGDRLRFMAEDSSVRMVLIGNSYTGQAHQLQVPVLTLDIGFEESEAADNLNLPSAPSDLAYIMYTSGSTGKPKGVMIEHKSILRLVKNAGYVPVTEEDRMAQTGAVSFDAGTFEVFGALLNGAALYPVKKETLLDAKQFAAFLREQSITTMWLTSPLFNQLAAKDAGMFGTLRHLIIGGDALVPHIVSKVKQASPSLSLWNGYGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIGAPGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGRIDNQVKVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADREVAVSELRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKELPAPQSEAVQPEYAAPKTESEKKLAEIWEGILGVKAGVTDNFFMIGGHSLKAMMMTAKIQEHFHKEVPIKVLFEKPTIQELALYLEENESKEEQTFEPIRQASYQQHYPVSPAQRRMYILNQLGQANTSYNVPAVLLLEGEVDKDRLENAIQQLINRHEILRTSFDMIDGEVVQTVHKNISFQLEAAKGREEDAEEIIKAFVQPFELNRAPLVRSKLVQLEEKRHLLLIDMHHIITDGSSTGILIGDLAKIYQGADLELPQIHYKDYAVWHKEQTNYQKDEEYWLDVFKGELPILDLPADFERPAERSFAGERVMFGLDKQITAQIKSLMAETDTTMYMFLLAAFNVLLSKYASQDDIIVGSPTAGRTHPDLQGVPGMFVNTVALRTAPAGDKTFAQFLEEVKTASLQAFEHQSYPLEELIEKLPLTRDTSRSPLFSVMFNMQNMEIPSLRLGDLKISSYSMLHHVAKFDLSLEAVEREEDIGLSFDYATALFKDETIRRWSRHFVNIIKAAAANPNVRLSDVDLLSSAETAALLEERHMTQITEATFAALFEKQAQQTPDHSAVKAGGNLLTYRELDEQANQLAHHLRAQGAGNEDIVAIVMDRSAEVMVSILGVMKAGAAFLPIDPDTPEERIRYSLEDSGAKFAVVNERNMTAIGQYEGIIVSLDDGKWRNESKERPSSISGSRNLAYVIYTSGTTGKPKGVQIEHRNLTNYVSWFSEEAGLTENDKTVLLSSYAFDLGYTSMFPVLLGGGELHIVQKETYTAPDEIAHYIKEHGITYIKLTPSLFHTIVNTASFAKDANFESLRLIVLGGEKIIPTDVIAFRKMYGHTEFINHYGPTEATIGAIAGRVDLYEPDAFAKRPTIGRPIANAGALVLNEALKLVPPGASGQLYITGQGLARGYLNRPQLTAERFVENPYSPGSLMYKTGDVVRRLSDGTLAFIGRADDQVKIRGYRIEPKEIETVMLSLSGIQEAVVLAVSEGGLQELCAYYTSDQDIEKAELRYQLSLTLPSHMIPAFFVQVDAIPLTANGKTDRNALPKPNAAQSGGKALAAPETALEESLCRIWQKTLGIEAIGIDDNFFDLGGHSLKGMMLIANIQAELEKSVPLKALFEQPTVRQLAAYMEASAVSGGHQVLKPADKQDMYPLSSAQKRMYVLNQLDRQTISYNMPSVLLMEGELDISRLRDSLNQLVNRHESLRTSFMEANGEPVQRIIEKAEVDLHVFEAKEDEADQKIKEFIRPFDLNDAPLIRAALLRIEAKKHLLLLDMHHIIADGVSRGIFVKELALLYKGEQLPEPTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLPLDYARPPVQSFKGDTIRFRTGSETAKAVEKLLAETGTTLHMVLHAVFHVFLSKISGQRDIVIGSVTAGRTNADVQDMPGMFVNTLALRMEAKEQQTFAELLELAKQTNLSALEHQEYPFEDLVNQLDLPRDMSRNPLFNVMVTTENPDKEQLTLQNLSISPYEAHQGTSKFDLTLGGFTDENGIGLQLEYATDLFAKETAEKWSEYVLRLLKAVADNPNQPLSSLLLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETVQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEGNPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPETADIEALKSTLKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREENGDIVQVYKPIGESKVSFEIVDLYGSDEEMLRSQIKLLANKLQSSLDLRNGPLLKAEQYRTEAGDHLLIAVHHLVVDGVSWRILLEDFASGYMQAEKEESLVFPQKTNSFKDWAEELAAFSQSAHLLQQAEYWSQIAAEQVSPLPKDCETEQRIVKDTSSVLCELTAEDTKHLLTDVHQPYGTEINDILLSALGLTMKEWTKGAKIGINLEGHGREDIIPNVNISRTVGWFTAQYPVVLDISDADASAVIKTVKENLRRIPDKGVGYGILRYFTETAETKGFTPEISFNYLGQFDSEVKTDFFEPSAFDMGRQVSGESEALYALSFSGMIRNGRFVLSCSYNEKEFERATVEEQMERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGDIFDMLEENLK"@en ; - sybio:accession "Q9X577"^^xsd:string , "BSU03490"^^xsd:string , "Q04747"^^xsd:string , "Q71EG0"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; +bo:11273 a bo:321 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "ribosomal protein S10 (BS13);BSU01150"@en , "30S ribosomal protein S10"@en ; + rdfs:label "rpsJ"@en , "BSU01150"@en , "RpsJ"@en , "TetA"@en ; + sybio:AA "MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL"@en ; + sybio:accession "P21471"^^xsd:string , "BSU01150"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30965 ; + sybio:encodedBy bo:29186 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "400929.29"^^xsd:string ; - sybio:pI "5.066444"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26942 ; - sybio:taxId "224308"@en ; - tawny:name "11361"@en . + sybio:hasFunction , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11269 , bo:11270 , bo:11272 , bo:11266 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "11665.195"^^xsd:string ; + sybio:pI "9.788902"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11284 , bo:9335 , bo:11280 , bo:11283 , bo:11278 , bo:11293 , bo:9765 , bo:11288 , bo:26902 , bo:11300 , bo:11307 , bo:11287 , bo:11306 , bo:11279 , bo:9360 , bo:11301 , bo:11277 , bo:9540 , bo:26796 , bo:11276 , bo:9165 , bo:11209 , bo:11286 , bo:9336 , bo:11281 , bo:9218 , bo:11291 , bo:11294 , bo:11290 , bo:11289 , bo:11275 , bo:11274 , bo:11299 , bo:9361 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11273"@en . bo:30161 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24290"@en ; @@ -43255,6 +43236,25 @@ bo:26671 a sybio:Protein , bo:460 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26671"@en . +bo:11361 a bo:512 , bo:513 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU03490;surfactin synthetase"@en , "Surfactin synthetase subunit 2;Recombinant surfactin/lichenysin A synthetase;SrfAB surfactin synthetase"@en ; + rdfs:label "SrfAB"@en , "srfAB"@en , "srfAB-lchAB"@en , "BSU03490"@en ; + sybio:AA "MSKKSIQKVYALTPMQEGMLYHAMLDPHSSSYFTQLELGIHGAFDLEIFEKSVNELIRSYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISHADENRQKEHIERYKQDVQRQGFNLAKDILFKVAVFRLAADQLYLVWSNHHIMMDGWSMGVLMKSLFQNYEALRAGRTPANGQGKPYSDYIKWLGKQDNEEAESYWSERLAGFEQPSVLPGRLPVKKDEYVNKEYSFTWDETLVARIQQTANLHQVTGPNLFQAVWGIVLSKYNFTDDVIFGTVVSGRPSEINGIETMAGLFINTIPVRVKVERDAAFADIFTAVQQHAVEAERYDYVPLYEIQKRSALDGNLLNHLVAFENYPLDQELENGSMEDRLGFSIKVESAFEQTSFDFNLIVYPGKTWTVKIKYNGAAFDSAFIERTAEHLTRMMEAAVDQPAAFVREYGLVGDEEQRQIVEVFNSTKAELPEGMAVHQVFEEQAKRTPASTAVVYEGTKLTYRELNAAANRLARKLVEHGLQKGETAAIMNDRSVETVVGMLAVLKAGAAYVPLDPALPGDRLRFMAEDSSVRMVLIGNSYTGQAHQLQVPVLTLDIGFEESEAADNLNLPSAPSDLAYIMYTSGSTGKPKGVMIEHKSILRLVKNAGYVPVTEEDRMAQTGAVSFDAGTFEVFGALLNGAALYPVKKETLLDAKQFAAFLREQSITTMWLTSPLFNQLAAKDAGMFGTLRHLIIGGDALVPHIVSKVKQASPSLSLWNGYGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIGAPGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGRIDNQVKVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADREVAVSELRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKELPAPQSEAVQPEYAAPKTESEKKLAEIWEGILGVKAGVTDNFFMIGGHSLKAMMMTAKIQEHFHKEVPIKVLFEKPTIQELALYLEENESKEEQTFEPIRQASYQQHYPVSPAQRRMYILNQLGQANTSYNVPAVLLLEGEVDKDRLENAIQQLINRHEILRTSFDMIDGEVVQTVHKNISFQLEAAKGREEDAEEIIKAFVQPFELNRAPLVRSKLVQLEEKRHLLLIDMHHIITDGSSTGILIGDLAKIYQGADLELPQIHYKDYAVWHKEQTNYQKDEEYWLDVFKGELPILDLPADFERPAERSFAGERVMFGLDKQITAQIKSLMAETDTTMYMFLLAAFNVLLSKYASQDDIIVGSPTAGRTHPDLQGVPGMFVNTVALRTAPAGDKTFAQFLEEVKTASLQAFEHQSYPLEELIEKLPLTRDTSRSPLFSVMFNMQNMEIPSLRLGDLKISSYSMLHHVAKFDLSLEAVEREEDIGLSFDYATALFKDETIRRWSRHFVNIIKAAAANPNVRLSDVDLLSSAETAALLEERHMTQITEATFAALFEKQAQQTPDHSAVKAGGNLLTYRELDEQANQLAHHLRAQGAGNEDIVAIVMDRSAEVMVSILGVMKAGAAFLPIDPDTPEERIRYSLEDSGAKFAVVNERNMTAIGQYEGIIVSLDDGKWRNESKERPSSISGSRNLAYVIYTSGTTGKPKGVQIEHRNLTNYVSWFSEEAGLTENDKTVLLSSYAFDLGYTSMFPVLLGGGELHIVQKETYTAPDEIAHYIKEHGITYIKLTPSLFHTIVNTASFAKDANFESLRLIVLGGEKIIPTDVIAFRKMYGHTEFINHYGPTEATIGAIAGRVDLYEPDAFAKRPTIGRPIANAGALVLNEALKLVPPGASGQLYITGQGLARGYLNRPQLTAERFVENPYSPGSLMYKTGDVVRRLSDGTLAFIGRADDQVKIRGYRIEPKEIETVMLSLSGIQEAVVLAVSEGGLQELCAYYTSDQDIEKAELRYQLSLTLPSHMIPAFFVQVDAIPLTANGKTDRNALPKPNAAQSGGKALAAPETALEESLCRIWQKTLGIEAIGIDDNFFDLGGHSLKGMMLIANIQAELEKSVPLKALFEQPTVRQLAAYMEASAVSGGHQVLKPADKQDMYPLSSAQKRMYVLNQLDRQTISYNMPSVLLMEGELDISRLRDSLNQLVNRHESLRTSFMEANGEPVQRIIEKAEVDLHVFEAKEDEADQKIKEFIRPFDLNDAPLIRAALLRIEAKKHLLLLDMHHIIADGVSRGIFVKELALLYKGEQLPEPTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLPLDYARPPVQSFKGDTIRFRTGSETAKAVEKLLAETGTTLHMVLHAVFHVFLSKISGQRDIVIGSVTAGRTNADVQDMPGMFVNTLALRMEAKEQQTFAELLELAKQTNLSALEHQEYPFEDLVNQLDLPRDMSRNPLFNVMVTTENPDKEQLTLQNLSISPYEAHQGTSKFDLTLGGFTDENGIGLQLEYATDLFAKETAEKWSEYVLRLLKAVADNPNQPLSSLLLVTETEKQALLEAWKGKALPVPTDKTVHQLFEETVQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSYTGDVILLDGSRTILSLPLDENDEGNPETAVTAENLAYMIYTSGTTGQPKGVMVEHHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDIVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYLNREDETAKRFVADPFVPGERMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPETADIEALKSTLKETLPDYMIPAFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVYREENGDIVQVYKPIGESKVSFEIVDLYGSDEEMLRSQIKLLANKLQSSLDLRNGPLLKAEQYRTEAGDHLLIAVHHLVVDGVSWRILLEDFASGYMQAEKEESLVFPQKTNSFKDWAEELAAFSQSAHLLQQAEYWSQIAAEQVSPLPKDCETEQRIVKDTSSVLCELTAEDTKHLLTDVHQPYGTEINDILLSALGLTMKEWTKGAKIGINLEGHGREDIIPNVNISRTVGWFTAQYPVVLDISDADASAVIKTVKENLRRIPDKGVGYGILRYFTETAETKGFTPEISFNYLGQFDSEVKTDFFEPSAFDMGRQVSGESEALYALSFSGMIRNGRFVLSCSYNEKEFERATVEEQMERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGDIFDMLEENLK"@en ; + sybio:accession "Q9X577"^^xsd:string , "BSU03490"^^xsd:string , "Q04747"^^xsd:string , "Q71EG0"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30965 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "400929.29"^^xsd:string ; + sybio:pI "5.066444"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26942 ; + sybio:taxId "224308"@en ; + tawny:name "11361"@en . + bo:19419 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "purD"@en ; @@ -43309,7 +43309,7 @@ bo:19507 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "rotamase"@en , "peptidyl-prolyl cis-trans isomerase"@en , "cis-trans proline isomerase"@en , "peptide bond isomerase"@en , "GO:0003755"@en , "cyclophilin"@en , "peptidylprolyl isomerase"@en , "juglone-sensitive peptidyl-prolyl cis-trans isomerase"@en , "immunophilin"@en , "peptidylprolyl cis-trans isomerase"@en , "PPIase"@en , "peptidyl-prolyl isomerase B reaction"@en , "cyclophilin-type peptidyl-prolyl cis-trans isomerase"@en , "juglone-sensitive cis-trans proline isomerase"@en , "peptidylproline cis-trans-isomerase"@en , "FK506-sensitive peptidyl-prolyl cis-trans isomerase"@en , "parvulin"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042028"^^xsd:string ; + owl:hasValue "GO:0003755"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -43317,15 +43317,15 @@ bo:19507 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003755"^^xsd:string ; + owl:hasValue "PEPTIDYLPROLYL-ISOMERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004752"^^xsd:string ; + owl:hasValue "GO:0042028"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PEPTIDYLPROLYL-ISOMERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004752"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -43577,15 +43577,15 @@ bo:32933 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROTEIN-KINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0050222"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050222"^^xsd:string ; + owl:hasValue "GO:0004672"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004672"^^xsd:string ; + owl:hasValue "PROTEIN-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -43870,6 +43870,25 @@ bo:30300 a sybio:CDS , owl:NamedIndividual ; "23.0"@en ; tawny:name "30300"@en . +bo:11500 a bo:491 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Purine catabolism regulatory protein"@en , "transcriptional regulator of the purine degradation operon;BSU32420"@en ; + rdfs:label "pucR"@en , "PucR"@en , "BSU32420"@en , "YunI"@en ; + sybio:AA "MNILDVMKIPAFENANLIAGKAGGEREVQHVNMMDAPDIVDFLHKNELLVTTAYHLKDHPHQLSELIRQMAKRGCAGLGIKTKRYLEDIPKEIIELADSYAFPIIELPEHIRLGDIVNATLSHILDMRSNELQQAIYAHKKFTNHIMSGKGLQSLLKKVSDILQLPVLLLDQHAKMLSASHQISVETEKLKGTLNTVSGPFFTCFSTISDQKTYSVLPIYNHEKNCGYLLIPDMVQAGDKGLILTIEQAANVISFELLKENALKQFSRRARNEFFNNFIERTFSSDDEIKNRAKEFKLRWDQKYMCIAGKLDRNDESISFTENQLASDSVFEFLEGELSAFPFPPHFFMKGNVGIILIEATDSWSEMHASVISFLEQFQTQVSAQFKRTVSFGISNICQKLIDVPDAFTEASDALQSGHLSRSTAFIQVYHAKDVPELLRLLPVEDLKKFYNSTLQSLAEKQQEDQSLLHTLSVYLETHCQISETAKRLYVHRNTVIYRLEKCEELLGKSLKDPETTMRLRLALRMQRLIS"@en ; + sybio:accession "O32138"^^xsd:string , "BSU32420"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:32039 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "60511.3"^^xsd:string ; + sybio:pI "6.189461"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11500"@en ; + owl:sameAs bo:6518 . + bo:26810 a sybio:Protein , owl:NamedIndividual , bo:573 ; rdfs:comment "acyl-CoA dehydrogenase;BSU37170"@en , "Acyl-CoA dehydrogenase;derived protein"@en ; rdfs:label "acdA"@en , "AcdA"@en , "BSU37170"@en ; @@ -43890,25 +43909,6 @@ bo:26810 a sybio:Protein , owl:NamedIndividual , bo:573 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26810"@en . -bo:11500 a bo:491 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Purine catabolism regulatory protein"@en , "transcriptional regulator of the purine degradation operon;BSU32420"@en ; - rdfs:label "pucR"@en , "PucR"@en , "BSU32420"@en , "YunI"@en ; - sybio:AA "MNILDVMKIPAFENANLIAGKAGGEREVQHVNMMDAPDIVDFLHKNELLVTTAYHLKDHPHQLSELIRQMAKRGCAGLGIKTKRYLEDIPKEIIELADSYAFPIIELPEHIRLGDIVNATLSHILDMRSNELQQAIYAHKKFTNHIMSGKGLQSLLKKVSDILQLPVLLLDQHAKMLSASHQISVETEKLKGTLNTVSGPFFTCFSTISDQKTYSVLPIYNHEKNCGYLLIPDMVQAGDKGLILTIEQAANVISFELLKENALKQFSRRARNEFFNNFIERTFSSDDEIKNRAKEFKLRWDQKYMCIAGKLDRNDESISFTENQLASDSVFEFLEGELSAFPFPPHFFMKGNVGIILIEATDSWSEMHASVISFLEQFQTQVSAQFKRTVSFGISNICQKLIDVPDAFTEASDALQSGHLSRSTAFIQVYHAKDVPELLRLLPVEDLKKFYNSTLQSLAEKQQEDQSLLHTLSVYLETHCQISETAKRLYVHRNTVIYRLEKCEELLGKSLKDPETTMRLRLALRMQRLIS"@en ; - sybio:accession "O32138"^^xsd:string , "BSU32420"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:32039 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "60511.3"^^xsd:string ; - sybio:pI "6.189461"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11500"@en ; - owl:sameAs bo:6518 . - bo:14698 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "succinate dehydrogenase (ubiquinone) iron-sulfur protein[EC:1.3.5.1]"@en ; rdfs:label "SDHB"@en , "SDH2"@en ; @@ -43970,11 +43970,11 @@ bo:14962 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "DGOAA"@en , "E4.1.2.21"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008674"^^xsd:string ; + owl:hasValue "COG0800"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0800"^^xsd:string ; + owl:hasValue "0008674"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -44077,19 +44077,19 @@ bo:12241 a sybio:Compound , owl:NamedIndividual ; rdfs:label "L-lactic acid dehydrogenase"@en , "L-lactic dehydrogenase"@en , "L-lactate dehydrogenase"@en , "GO:0004459"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "L-LACTATE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.1.1.27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.27"^^xsd:string ; + owl:hasValue "GO:0004459"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11515 \"L-lactate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "L-LACTATE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004459"^^xsd:string ; + owl:hasValue "11515 \"L-lactate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -44127,7 +44127,7 @@ bo:32808 a owl:NamedIndividual , sybio:CDS ; rdfs:label "phosphoribosyladenosine monophosphate cyclohydrolase"@en , "1 6-hydrolase"@en , "phosphoribosyl-AMP cyclohydrolase"@en , "GO:0004635"@en , "PRAMP-cyclohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HISTCYCLOHYD-RXN"^^xsd:string ; + owl:hasValue "3.5.4.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -44135,7 +44135,7 @@ bo:32808 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.19"^^xsd:string ; + owl:hasValue "HISTCYCLOHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -44147,15 +44147,15 @@ bo:32808 a owl:NamedIndividual , sybio:CDS ; rdfs:label "isopentenyl-diphosphate:tRNA isopentenyltransferase"@en , "tRNA isopentenyltransferase"@en , "transfer ribonucleate isopentenyltransferase"@en , "GO:0004811"@en , "delta2-isopentenyl pyrophosphate:tRNA-delta2-isopentenyl transferase"@en , "delta2-isopentenyl pyrophosphate:transfer ribonucleic acid delta2-isopentenyltransferase"@en , "IPP transferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.8"^^xsd:string ; + owl:hasValue "GO:0004811"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004811"^^xsd:string ; + owl:hasValue "TRNA-ISOPENTENYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRNA-ISOPENTENYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "2.5.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -44605,16 +44605,6 @@ bo:15930 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01259+K11142"@en ; tawny:name "15930"@en . -bo:16584 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "phosphinothricin biosynthesis protein PhpD"@en ; - rdfs:label "PHPD"@en ; - sybio:accession "Q5IW40"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16583 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12905"@en ; - tawny:name "16584"@en . - bo:28167 a sybio:RBS , owl:NamedIndividual ; rdfs:label "yobW_RBS"@en ; sybio:NA "GGAGGGGATTTCACATC"^^xsd:string ; @@ -44625,6 +44615,16 @@ bo:28167 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31578 ; tawny:name "28167"@en . +bo:16584 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "phosphinothricin biosynthesis protein PhpD"@en ; + rdfs:label "PHPD"@en ; + sybio:accession "Q5IW40"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16583 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12905"@en ; + tawny:name "16584"@en . + bo:16672 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "phospholipid-hydroperoxide glutathione peroxidase [EC:1.11.1.12]"@en ; rdfs:label "E1.11.1.12"@en ; @@ -44817,11 +44817,11 @@ bo:3977 a sybio:Operator , owl:NamedIndividual , sybio:Posit rdfs:label "protein tagging"@en , "alpha-2 macroglobulin receptor-associated protein"@en , "GO:0005515"@en , "protein folding chaperone"@en , "protein degradation tagging"@en , "protein amino acid binding"@en , "protein binding"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045308"^^xsd:string ; + owl:hasValue "6125 \"protein binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6125 \"protein binding\""^^xsd:string ; + owl:hasValue "GO:0045308"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -44889,15 +44889,15 @@ bo:1168 a owl:Class ; rdfs:label "glycerophosphodiester phosphodiesterase"@en , "GO:0008889"@en , "glycerophosphoryl diester phosphodiesterase"@en , "IgD-binding protein D"@en , "gene hpd protein"@en , "glycerophosphodiester glycerophosphohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.4.46"^^xsd:string ; + owl:hasValue "GLYCPDIESTER-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008889"^^xsd:string ; + owl:hasValue "3.1.4.46"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCPDIESTER-RXN"^^xsd:string ; + owl:hasValue "GO:0008889"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -44947,15 +44947,15 @@ bo:29084 a sybio:CDS , owl:NamedIndividual ; rdfs:label "prephenate dehydrogenase"@en , "chorismate mutase--prephenate dehydrogenase"@en , "hydroxyphenylpyruvate synthase"@en , "prephenate:NAD+ oxidoreductase"@en , "GO:0008977"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.12"^^xsd:string ; + owl:hasValue "PREPHENATEDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008977"^^xsd:string ; + owl:hasValue "1.3.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PREPHENATEDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0008977"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -45118,16 +45118,6 @@ bo:4894 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yjbJ"@en ; tawny:name "4894"@en . -bo:16547 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "D-3-phosphoglycerate dehydrogenase"@en ; - rdfs:label "PHPE"@en ; - sybio:accession "Q5IW39"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16548 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12906"@en ; - tawny:name "16547"@en . - a owl:Class ; rdfs:comment "The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; @@ -45140,6 +45130,16 @@ bo:16547 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16547 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "D-3-phosphoglycerate dehydrogenase"@en ; + rdfs:label "PHPE"@en ; + sybio:accession "Q5IW39"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16548 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12906"@en ; + tawny:name "16547"@en . + bo:4982 a sybio:Operon , owl:NamedIndividual ; rdfs:label "cheV"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -45148,15 +45148,6 @@ bo:4982 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "cheV"@en ; tawny:name "4982"@en . -bo:16635 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; - rdfs:label "TDPX"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16634 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; - tawny:name "16635"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents."@en ; @@ -45169,6 +45160,15 @@ bo:16635 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16635 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; + rdfs:label "TDPX"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16634 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; + tawny:name "16635"@en . + bo:28218 a owl:NamedIndividual , sybio:Shim ; rdfs:label "lepA_RBS_upstream"@en ; sybio:NA "CGTTT"^^xsd:string ; @@ -45313,7 +45313,7 @@ bo:22933 a owl:NamedIndividual , owl:Class , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009982"^^xsd:string ; + owl:hasValue "5.4.99.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -45321,7 +45321,7 @@ bo:22933 a owl:NamedIndividual , owl:Class , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.99.12"^^xsd:string ; + owl:hasValue "GO:0009982"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -45536,27 +45536,6 @@ bo:663 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "663"@en . -bo:17640 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]"@en ; - rdfs:label "ALIA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17639 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04116"@en ; - tawny:name "17640"@en . - -bo:23498 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.1.1.72"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.72"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "23498"@en . - bo:29223 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01590"@en ; rdfs:label "BSU01590"@en , "ybaS"@en ; @@ -45582,6 +45561,27 @@ bo:29223 a sybio:CDS , owl:NamedIndividual ; "209.0"@en ; tawny:name "29223"@en . +bo:17640 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]"@en ; + rdfs:label "ALIA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17639 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04116"@en ; + tawny:name "17640"@en . + +bo:23498 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.1.1.72"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.72"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "23498"@en . + bo:751 a owl:Class ; rdfs:label "COG0737"@en ; rdfs:subClassOf bo:185 , sybio:COG ; @@ -45958,11 +45958,11 @@ bo:538 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.78-RXN"^^xsd:string ; + owl:hasValue "3.2.1.78"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.78"^^xsd:string ; + owl:hasValue "3.2.1.78-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -46384,11 +46384,11 @@ bo:18520 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PDS"@en , "CRTP"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016166"^^xsd:string ; + owl:hasValue "COG3349"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3349"^^xsd:string ; + owl:hasValue "0016166"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -46681,6 +46681,16 @@ bo:25295 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25295"@en . +bo:25383 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "NAD+ (see R03327)multi-step reaction (see R03176+R02644) - reversible"@en ; + rdfs:label "17alpha-Hydroxypregnenolone"@en , "C05138 + C00006 <=> C01176 + C00005 + C00080"@en , "NADP+ 3-oxidoreductase"@en , "cpd:C01176 <=> cpd:C01176"@en ; + sybio:accession "RN:R03328"^^xsd:string ; + sybio:catalyzingClass bo:25379 , bo:25380 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25383"@en . + bo:10073 a sybio:Protein , owl:NamedIndividual , bo:412 ; rdfs:comment "Uncharacterized transporter ydeK"@en , "BSU05230;putative permease;"@en ; rdfs:label "BSU05230"@en , "ydeK"@en , "YdeK"@en ; @@ -46699,15 +46709,15 @@ bo:10073 a sybio:Protein , owl:NamedIndividual , bo:412 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10073"@en . -bo:25383 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "NAD+ (see R03327)multi-step reaction (see R03176+R02644) - reversible"@en ; - rdfs:label "17alpha-Hydroxypregnenolone"@en , "C05138 + C00006 <=> C01176 + C00005 + C00080"@en , "NADP+ 3-oxidoreductase"@en , "cpd:C01176 <=> cpd:C01176"@en ; - sybio:accession "RN:R03328"^^xsd:string ; - sybio:catalyzingClass bo:25379 , bo:25380 ; +bo:25471 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C06756 <=> cpd:C06756"@en , "C06756 + C00340 + C00007 <=> C06757 + C00435 + C00001"@en ; + sybio:accession "RN:R05490"^^xsd:string ; + sybio:catalyzingClass bo:25225 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25383"@en . + tawny:name "25471"@en . bo:10161 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndividual ; rdfs:comment "BSU18330;plipastatin synthetase"@en , "Plipastatin synthetase subunit B"@en ; @@ -46727,16 +46737,6 @@ bo:10161 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "10161"@en . -bo:25471 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C06756 <=> cpd:C06756"@en , "C06756 + C00340 + C00007 <=> C06757 + C00435 + C00001"@en ; - sybio:accession "RN:R05490"^^xsd:string ; - sybio:catalyzingClass bo:25225 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25471"@en . - bo:6478 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yndL_terminator"@en ; sybio:NA "AGCTACTGAAAAATAGGAGGCGATAAGACAGCCTCCTATTCCTTATGCTTCTCTTTC"^^xsd:string ; @@ -46969,11 +46969,11 @@ bo:4021 a sybio:NegativelyRegulatedOperator , sybio:Operator rdfs:label "heptaprenyl pyrophosphate synthase"@en , "all-trans-hexaprenyl-diphosphate:isopentenyl-diphosphate hexaprenyltranstransferase"@en , "GO:0000010"@en , "all-trans-heptaprenyl-diphosphate synthase"@en , "heptaprenyl diphosphate synthase"@en , "heptaprenyl pyrophosphate synthetase"@en , "trans-hexaprenyltranstransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000010"^^xsd:string ; + owl:hasValue "2.5.1.30"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.30"^^xsd:string ; + owl:hasValue "GO:0000010"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -47009,16 +47009,6 @@ bo:31469 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "31469"@en . -bo:27979 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "yceC_RBS_upstream"@en ; - sybio:NA "TTTACGGCTTATTTTCCTTGTGAGCGTAAAAATAAATGTGACTATCTTCACATTTT"^^xsd:string ; - sybio:begin "312083"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "312138"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27978 ; - tawny:name "27979"@en . - bo:12669 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C8H10O2"@en ; rdfs:label "C8H10O2"@en , "4-Hydroxyphenylethanol"@en , "Tyrosol"@en ; @@ -47030,6 +47020,16 @@ bo:12669 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06044"@en ; tawny:name "12669"@en . +bo:27979 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "yceC_RBS_upstream"@en ; + sybio:NA "TTTACGGCTTATTTTCCTTGTGAGCGTAAAAATAAATGTGACTATCTTCACATTTT"^^xsd:string ; + sybio:begin "312083"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "312138"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27978 ; + tawny:name "27979"@en . + bo:19048 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-Pphosphatase) [EC:3.1.3.45]"@en ; rdfs:label "KDSC"@en ; @@ -47110,7 +47110,7 @@ bo:19136 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "GO:0009021"@en , "tRNA (uracil-5-)-methyltransferase"@en , "tRNA uracil 5-methyltransferase"@en , "tRNA:m5U54-methyltransferase"@en , "M5U-methyltransferase"@en , "transfer RNA uracil methylase"@en , "RUMT"@en , "activity"@en , "m5U-methyltransferase"@en , "ribothymidyl synthase"@en , "S-adenosyl-L-methionine:tRNA"@en , "transfer RNA uracil 5-methyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRNA-URACIL-5--METHYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "2.1.1.35"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -47118,7 +47118,7 @@ bo:19136 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.35"^^xsd:string ; + owl:hasValue "TRNA-URACIL-5--METHYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -47874,6 +47874,17 @@ bo:32349 a sybio:CDS , owl:NamedIndividual ; "13.0"@en ; tawny:name "32349"@en . +bo:13549 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C32H46N7O19P3S"@en ; + rdfs:label "(R)-2-Benzylsuccinyl-CoA"@en , "C32H46N7O19P3S"@en , "Benzylsuccinyl-CoA"@en ; + sybio:accession "C09817"^^xsd:string , "10970"^^xsd:string , "12005"^^xsd:string ; + sybio:consumedBy bo:24205 , bo:24213 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24205 , bo:24213 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C09817"@en ; + tawny:name "13549"@en . + bo:28859 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU40240"@en ; rdfs:label "yycS"@en , "BSU40240"@en ; @@ -47900,36 +47911,25 @@ bo:28859 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "28859"@en . -bo:13549 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C32H46N7O19P3S"@en ; - rdfs:label "(R)-2-Benzylsuccinyl-CoA"@en , "C32H46N7O19P3S"@en , "Benzylsuccinyl-CoA"@en ; - sybio:accession "C09817"^^xsd:string , "10970"^^xsd:string , "12005"^^xsd:string ; - sybio:consumedBy bo:24205 , bo:24213 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24205 , bo:24213 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C09817"@en ; - tawny:name "13549"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: 2 ATP + L-glutamine + CO2 + H2O = 2 ADP + phosphate + glutamate + carbamoyl phosphate."@en ; rdfs:label "carbamyl phosphate synthetase"@en , "carbamoyl-phosphate synthase (glutamine-hydrolyzing)"@en , "hydrogen-carbonate:L-glutamine amido-ligase"@en , "CPS"@en , "carbamoyl-phosphate synthetase"@en , "GD-CPSase"@en , "carbamoyl-phosphate synthase"@en , "carbamoylphosphate synthetase II"@en , "GO:0004088"@en , "glutamine-dependent carbamoyl-phosphate synthase"@en , "glutamine-dependent carbamyl phosphate synthetase"@en , "carbon-dioxide::L-glutamine amido-ligase"@en , "carbamoyl phosphate synthase"@en , "carbamoyl phosphate synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.5"^^xsd:string ; + owl:hasValue "CARBPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7299 \"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; + owl:hasValue "GO:0004088"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CARBPSYN-RXN"^^xsd:string ; + owl:hasValue "7299 \"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004088"^^xsd:string ; + owl:hasValue "6.3.5.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -48005,11 +48005,11 @@ bo:13637 a owl:NamedIndividual , sybio:Compound ; rdfs:label "ATP-dependent peptidase"@en , "GO:0004176"@en , "ATP-dependent proteolysis"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004176"^^xsd:string ; + owl:hasValue "GO:0004280"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004280"^^xsd:string ; + owl:hasValue "GO:0004176"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -48097,11 +48097,11 @@ bo:13813 a sybio:Compound , owl:NamedIndividual ; rdfs:label "NAD-specific glutamate dehydrogenase"@en , "NAD-linked glutamic dehydrogenase"@en , "NADH-linked glutamate dehydrogenase"@en , "NAD-specific glutamic dehydrogenase"@en , "NAD-dependent glutamate dehydrogenase"@en , "L-glutamate:NAD+ oxidoreductase"@en , "NAD-dependent glutamic dehydrogenase"@en , "glutamic acid dehydrogenase"@en , "GO:0004352"@en , "glutamate dehydrogenase"@en , "NAD:glutamate oxidoreductase"@en , "glutamate oxidoreductase"@en , "NAD-linked glutamate dehydrogenase"@en , "L-glutamate dehydrogenase"@en , "glutamic dehydrogenase"@en , "NAD-glutamate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.1.2"^^xsd:string ; + owl:hasValue "GLUTAMATE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTAMATE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.4.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -48557,15 +48557,15 @@ bo:21594 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "deoxyribose-5-phosphate aldolase"@en , "deoxyriboaldolase"@en , "phosphodeoxyriboaldolase"@en , "GO:0004139"@en , "2-deoxyribose-5-phosphate aldolase"@en , "deoxyribose-phosphate aldolase"@en , "2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DEOXYRIBOSE-P-ALD-RXN"^^xsd:string ; + owl:hasValue "4.1.2.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004139"^^xsd:string ; + owl:hasValue "DEOXYRIBOSE-P-ALD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.4"^^xsd:string ; + owl:hasValue "GO:0004139"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -48614,7 +48614,7 @@ bo:21770 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "beta-ketoacyl synthetase"@en , "3-oxoacyl-acyl-carrier-protein synthase"@en , "3-oxoacyl-[acyl-carrier-protein] synthase"@en , "3-ketoacyl-acyl carrier protein synthase"@en , "beta-ketoacyl-acyl-carrier-protein synthase I"@en , "beta-ketoacyl-ACP synthetase"@en , "ketoacyl-ACP synthase"@en , "GO:0004315"@en , "acyl-malonyl acyl carrier protein-condensing enzyme"@en , "beta-ketoacyl-acyl carrier protein synthetase"@en , "beta-ketoacylsynthase"@en , "enzyme"@en , "fatty acid condensing enzyme"@en , "3-oxoacyl:ACP synthase I"@en , "FabF1"@en , "KASI"@en , "FabB"@en , "beta-ketoacyl-acyl carrier protein synthase"@en , "beta-ketoacyl-[acyl carrier protein] synthase"@en , "acyl-acyl-carrier-protein:malonyl-acyl-carrier-protein C-acyltransferase"@en , "3-oxoacyl-[acyl-carrier protein] synthase"@en , "3-oxoacyl-ACP synthase"@en , "condensing enzyme"@en , "beta-ketoacyl-ACP synthase I"@en , "KAS I"@en , "beta-ketoacyl acyl carrier protein synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004315"^^xsd:string ; + owl:hasValue "2.3.1.41"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -48622,11 +48622,11 @@ bo:21770 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.41"^^xsd:string ; + owl:hasValue "76136 \"3-oxoacyl-[acyl-carrier-protein] synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "76136 \"3-oxoacyl-[acyl-carrier-protein] synthase activity\""^^xsd:string ; + owl:hasValue "GO:0004315"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -49098,11 +49098,11 @@ bo:18897 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.9"^^xsd:string ; + owl:hasValue "ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN"^^xsd:string ; + owl:hasValue "3.2.2.9"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -49124,11 +49124,11 @@ bo:18985 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "EXTL3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT47"^^xsd:string ; + owl:hasValue "GT64"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT64"^^xsd:string ; + owl:hasValue "GT47"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -49246,6 +49246,16 @@ bo:16352 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00543"@en ; tawny:name "16352"@en . +bo:28023 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "sspF_RBS_upstream"@en ; + sybio:NA "TCGTGACGTGCACGAATGGCTATCACTTC"^^xsd:string ; + sybio:begin "53134"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "53162"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28022 ; + tawny:name "28023"@en . + bo:16440 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "coumermycin A biosynthesis protein CouN2"@en ; rdfs:label "COUN2"@en ; @@ -49268,32 +49278,32 @@ bo:22298 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22298"@en . -bo:28023 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "sspF_RBS_upstream"@en ; - sybio:NA "TCGTGACGTGCACGAATGGCTATCACTTC"^^xsd:string ; - sybio:begin "53134"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "53162"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28022 ; - tawny:name "28023"@en . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine."@en ; rdfs:label "cysteine desulfurylase"@en , "cysteine desulfurase"@en , "NifS"@en , "NIFS"@en , "L-cysteine:enzyme cysteine sulfurtransferase"@en , "IscS"@en , "GO:0031071"@en , "SufS"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031071"^^xsd:string ; + owl:hasValue "2.8.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.1.7"^^xsd:string ; + owl:hasValue "GO:0031071"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:28111 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yjcA_RBS"@en ; + sybio:NA "ATTGGCAAAGGAGTGAACGA"^^xsd:string ; + sybio:begin "1252157"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1252176"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31272 ; + tawny:name "28111"@en . + bo:22386 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.13.11.4"@en ; @@ -49306,16 +49316,6 @@ bo:22386 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22386"@en . -bo:28111 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yjcA_RBS"@en ; - sybio:NA "ATTGGCAAAGGAGTGAACGA"^^xsd:string ; - sybio:begin "1252157"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1252176"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31272 ; - tawny:name "28111"@en . - bo:9118 a sybio:Protein , owl:NamedIndividual , bo:527 ; rdfs:comment "Putative NAD(P)H nitroreductase ydgI"@en , "BSU05660;putative dehydrogenase;"@en ; rdfs:label "ydgI"@en , "YdgI"@en , "BSU05660"@en ; @@ -49534,27 +49534,27 @@ bo:17181 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019"@en ; tawny:name "17181"@en . -bo:292 a owl:Class ; - rdfs:label "COG1855"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:1024 a owl:Class ; + rdfs:label "COG0450"@en ; + rdfs:subClassOf bo:173 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1855"^^xsd:string ; + owl:hasValue "COG0450"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "292"@en . + tawny:name "1024"@en . -bo:1024 a owl:Class ; - rdfs:label "COG0450"@en ; - rdfs:subClassOf bo:173 , sybio:COG ; +bo:292 a owl:Class ; + rdfs:label "COG1855"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0450"^^xsd:string ; + owl:hasValue "COG1855"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1024"@en . + tawny:name "292"@en . bo:10890 a sybio:Protein , owl:NamedIndividual , bo:450 ; rdfs:comment "putative transcriptional regulator (TetR/AcrR family);BSU03850"@en , "Uncharacterized HTH-type transcriptional regulator ycnC"@en ; @@ -49575,32 +49575,21 @@ bo:10890 a sybio:Protein , owl:NamedIndividual , bo:450 ; tawny:name "10890"@en ; owl:sameAs bo:6633 . -bo:380 a owl:Class ; - rdfs:label "COG1263"@en ; - rdfs:subClassOf bo:365 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1263"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "380"@en . - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides."@en ; rdfs:label "GO:0008745"@en , "N-acetylmuramoyl-L-alanine amidase"@en , "acetylmuramyl-L-alanine amidase"@en , "N-acetylmuramoyl-L-alanine amidase type II"@en , "N-acetylmuramyl-L-alanine amidase"@en , "acetylmuramyl-alanine amidase"@en , "peptidoglycan amidohydrolase"@en , "N-acetylmuramic acid L-alanine amidase"@en , "murein hydrolase"@en , "N-acylmuramyl-L-alanine amidase"@en , "N-acetylmuramoyl-L-alanine amidase type I"@en , "N-acetylmuramylalanine amidase"@en , "acetylmuramoyl-alanine amidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008745"^^xsd:string ; + owl:hasValue "3.5.1.28"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.28-RXN"^^xsd:string ; + owl:hasValue "GO:0008745"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.28"^^xsd:string ; + owl:hasValue "3.5.1.28-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -49617,17 +49606,28 @@ bo:1112 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1112"@en . +bo:380 a owl:Class ; + rdfs:label "COG1263"@en ; + rdfs:subClassOf bo:365 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1263"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "380"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the endonucleolytic cleavage to 5'-phosphooligonucleotide end-products."@en ; rdfs:label "endonuclease IV"@en , "deoxyribonuclease IV (phage-T4-induced)"@en , "endonuclease II"@en , "DNA-adenine-transferase"@en , "deoxyribonuclease IV"@en , "Escherichia coli endonuclease II"@en , "deoxriboendonuclease"@en , "endodeoxyribonuclease IV"@en , "E. coli endonuclease IV"@en , "GO:0008833"@en , "redoxyendonuclease"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008833"^^xsd:string ; + owl:hasValue "3.1.21.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.21.2"^^xsd:string ; + owl:hasValue "GO:0008833"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -49703,6 +49703,14 @@ bo:4486 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4485 ; tawny:name "4486"@en . +bo:4574 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydhO"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30876 ; + sybio:operonGenes "ydhO"@en ; + tawny:name "4574"@en . + bo:16227 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]"@en ; rdfs:label "PCAB"@en , "E5.5.1.2"@en ; @@ -49712,14 +49720,6 @@ bo:16227 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01857"@en ; tawny:name "16227"@en . -bo:4574 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydhO"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30876 ; - sybio:operonGenes "ydhO"@en ; - tawny:name "4574"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol."@en ; @@ -49732,16 +49732,28 @@ bo:4574 a sybio:Operon , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4662 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "citM-yflN_terminator"@en ; + sybio:NA "TTTGACACCCGCACCACGCGGGTGTTTTTTATTGTTTTC"^^xsd:string ; + sybio:annotatedSequence "TTTGA{left}CACCCGC{/left}ACCAC{right}GCGGGTG{/right}TTTTTTATTGTTTTC"@en ; + sybio:begin "836530"@en ; + sybio:deltaGo "-15.8"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "836568"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4661 ; + tawny:name "4662"@en . + bo:16315 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "kynureninase [EC:3.7.1.3]"@en ; rdfs:label "E3.7.1.3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030429"^^xsd:string ; + owl:hasValue "COG3844"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3844"^^xsd:string ; + owl:hasValue "0030429"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -49749,18 +49761,6 @@ bo:16315 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01556"@en ; tawny:name "16315"@en . -bo:4662 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "citM-yflN_terminator"@en ; - sybio:NA "TTTGACACCCGCACCACGCGGGTGTTTTTTATTGTTTTC"^^xsd:string ; - sybio:annotatedSequence "TTTGA{left}CACCCGC{/left}ACCAC{right}GCGGGTG{/right}TTTTTTATTGTTTTC"@en ; - sybio:begin "836530"@en ; - sybio:deltaGo "-15.8"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "836568"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4661 ; - tawny:name "4662"@en . - bo:16403 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "dehydroquinate synthase II [EC:1.4.1.-]"@en ; rdfs:label "K11646"@en ; @@ -49901,11 +49901,11 @@ bo:16138 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "HCAA1"@en , "HCAE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008695"^^xsd:string ; + owl:hasValue "COG4638"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4638"^^xsd:string ; + owl:hasValue "0008695"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -49953,6 +49953,16 @@ bo:10589 a bo:1549 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "10589"@en . +bo:25987 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "CDPcholine"@en , "cpd:C03454 <=> cpd:C03454"@en , "1-alkenyl-2-acylglycerol cholinephosphotransferase"@en , "C00307 + C03454 <=> C00055 + C00958"@en ; + sybio:accession "RN:R03110"^^xsd:string ; + sybio:catalyzingClass bo:25988 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25987"@en . + bo:10677 a sybio:Protein , owl:NamedIndividual , bo:450 ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator ydeS"@en , "BSU05320;putative transcriptional regulator (TetR/AcrR family)"@en ; rdfs:label "YdeS"@en , "ydeS"@en , "BSU05320"@en ; @@ -49972,16 +49982,6 @@ bo:10677 a sybio:Protein , owl:NamedIndividual , bo:450 ; tawny:name "10677"@en ; owl:sameAs bo:6614 . -bo:25987 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "CDPcholine"@en , "cpd:C03454 <=> cpd:C03454"@en , "1-alkenyl-2-acylglycerol cholinephosphotransferase"@en , "C00307 + C03454 <=> C00055 + C00958"@en ; - sybio:accession "RN:R03110"^^xsd:string ; - sybio:catalyzingClass bo:25988 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25987"@en . - bo:17056 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "phosphatidylinositol-3-phosphatase [EC:3.1.3.64]"@en ; rdfs:label "E3.1.3.64"@en ; @@ -50281,17 +50281,6 @@ bo:11594 a owl:NamedIndividual , sybio:Pathway , owl:Class ; sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00300"@en ; tawny:name "11594"@en . -bo:11682 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00626"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00626"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11682"@en . - bo:30482 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU33160;"@en ; rdfs:label "yvrA"@en , "BSU33160"@en ; @@ -50336,6 +50325,17 @@ bo:26992 a bo:685 , bo:381 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "26992"@en . +bo:11682 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00626"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00626"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11682"@en . + bo:18061 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "phytochromobilin:ferredoxin oxidoreductase [EC:1.3.7.4]"@en ; rdfs:label "E1.3.7.4"@en ; @@ -50400,26 +50400,26 @@ bo:24095 a owl:NamedIndividual , sybio:EC , owl:Class ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA."@en ; - rdfs:label "beta-ketoacyl coenzyme A thiolase"@en , "3-ketoacyl CoA thiolase"@en , "acetoacetyl-CoA beta-ketothiolase"@en , "beta-ketoadipyl-CoA thiolase"@en , "3-oxoacyl-coenzyme A thiolase"@en , "3-ketoacyl thiolase"@en , "acetyl-CoA C-acyltransferase"@en , "ketoacyl-coenzyme A thiolase"@en , "beta-ketoacyl-CoA thiolase"@en , "beta-ketothiolase"@en , "2-methylacetoacetyl-CoA thiolase"@en , "3-oxoacyl-CoA thiolase"@en , "acetyl-CoA acyltransferase"@en , "acyl-CoA:acetyl-CoA C-acyltransferase"@en , "oxoacyl-coenzyme A thiolase"@en , "3-ketothiolase"@en , "KAT"@en , "GO:0003988"@en , "ketoacyl-CoA acyltransferase"@en , "3-ketoacyl coenzyme A thiolase"@en , "beta-ketoadipyl coenzyme A thiolase"@en , "long-chain 3-oxoacyl-CoA thiolase"@en , "6-oxoacyl-CoA thiolase"@en , "thiolase I"@en , "3-ketoacyl-CoA thiolase"@en , "pro-3-ketoacyl-CoA thiolase"@en , "2-keto-acyl thiolase"@en ; + rdfs:label "pro-3-ketoacyl-CoA thiolase"@en , "beta-ketoacyl coenzyme A thiolase"@en , "3-ketoacyl CoA thiolase"@en , "acetoacetyl-CoA beta-ketothiolase"@en , "beta-ketoadipyl-CoA thiolase"@en , "3-oxoacyl-coenzyme A thiolase"@en , "3-ketoacyl thiolase"@en , "acetyl-CoA C-acyltransferase"@en , "ketoacyl-coenzyme A thiolase"@en , "beta-ketoacyl-CoA thiolase"@en , "beta-ketothiolase"@en , "2-methylacetoacetyl-CoA thiolase"@en , "3-oxoacyl-CoA thiolase"@en , "acetyl-CoA acyltransferase"@en , "acyl-CoA:acetyl-CoA C-acyltransferase"@en , "oxoacyl-coenzyme A thiolase"@en , "3-ketothiolase"@en , "KAT"@en , "GO:0003988"@en , "ketoacyl-CoA acyltransferase"@en , "3-ketoacyl coenzyme A thiolase"@en , "beta-ketoadipyl coenzyme A thiolase"@en , "long-chain 3-oxoacyl-CoA thiolase"@en , "6-oxoacyl-CoA thiolase"@en , "thiolase I"@en , "3-ketoacyl-CoA thiolase"@en , "2-keto-acyl thiolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "KETOACYLCOATHIOL-RXN"^^xsd:string ; + owl:hasValue "12715 \"acetyl-CoA C-acyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003988"^^xsd:string ; + owl:hasValue "KETOACYLCOATHIOL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12715 \"acetyl-CoA C-acyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0003988"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.16"^^xsd:string ; + owl:hasValue "e0653"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0653"^^xsd:string ; + owl:hasValue "2.3.1.16"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -50523,11 +50523,11 @@ bo:17107 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PLDA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2829"^^xsd:string ; + owl:hasValue "0017063"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0017063"^^xsd:string ; + owl:hasValue "COG2829"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -50757,22 +50757,6 @@ bo:30357 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30357"@en . -bo:11557 a owl:Class , owl:NamedIndividual , sybio:Pathway ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00052.png"@en ; - rdfs:label "Galactose metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00052"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11555 , bo:11553 , bo:11652 ; - sybio:derivesFrom bo:11558 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00052"@en ; - tawny:name "11557"@en . - bo:26867 a sybio:Protein , bo:1854 , owl:NamedIndividual ; rdfs:comment "Arginase;derived protein"@en , "BSU40320;arginase"@en ; rdfs:label "BSU40320"@en , "RocF"@en , "argI"@en , "ArgI"@en , "rocF"@en ; @@ -50792,6 +50776,22 @@ bo:26867 a sybio:Protein , bo:1854 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26867"@en . +bo:11557 a owl:Class , owl:NamedIndividual , sybio:Pathway ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00052.png"@en ; + rdfs:label "Galactose metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00052"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11555 , bo:11553 , bo:11652 ; + sybio:derivesFrom bo:11558 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00052"@en ; + tawny:name "11557"@en . + bo:6283 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yybST-rplI"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -51265,16 +51265,6 @@ bo:31450 a sybio:CDS , owl:NamedIndividual ; "19.0"@en ; tawny:name "31450"@en . -bo:27960 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "opuE_RBS"@en ; - sybio:NA "AAATGAAGAGAGGGTAAAAC"^^xsd:string ; - sybio:begin "728338"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "728319"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30782 ; - tawny:name "27960"@en . - bo:12650 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C9H10O4"@en ; rdfs:label "C9H10O4"@en , "3-Methoxy-4-hydroxyphenylglycolaldehyde"@en ; @@ -51286,6 +51276,16 @@ bo:12650 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05583"@en ; tawny:name "12650"@en . +bo:27960 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "opuE_RBS"@en ; + sybio:NA "AAATGAAGAGAGGGTAAAAC"^^xsd:string ; + sybio:begin "728338"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "728319"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30782 ; + tawny:name "27960"@en . + bo:25063 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "unclear reaction - irreversible"@en ; rdfs:label "C11941 <=> C09884 + C00080"@en , "Pinocarveol dehydrogenase"@en , "cpd:C11941 => cpd:C11941"@en ; @@ -51354,6 +51354,17 @@ bo:30408 a owl:NamedIndividual , sybio:CDS ; "5.0"@en ; tawny:name "30408"@en . +bo:11608 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00350"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00350"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11608"@en . + bo:26918 a bo:435 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Probable glucarate dehydratase;derived protein"@en , "glucarate dehydratase;BSU02490"@en ; rdfs:label "GudD"@en , "BSU02490"@en , "gudD"@en , "YcbF"@en ; @@ -51373,17 +51384,6 @@ bo:26918 a bo:435 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26918"@en . -bo:11608 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00350"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00350"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11608"@en . - bo:6334 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ylbDE_terminator"@en ; sybio:NA "GCGGACAAAAGATTAAAAGGCCCCGAAGAAGGGTCTTTTTTCATGCGGTC"^^xsd:string ; @@ -51862,11 +51862,11 @@ bo:6209 a sybio:Operon , owl:NamedIndividual ; rdfs:label "sulphur metabolism"@en , "sulphur metabolic process"@en , "sulfur metabolic process"@en , "sulfur metabolism"@en , "GO:0006790"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006790"^^xsd:string ; + owl:hasValue "Sulfur_metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Sulfur_metabolism"^^xsd:string ; + owl:hasValue "GO:0006790"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -51923,11 +51923,11 @@ bo:16993 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.3.1.15B"@en , "PLSB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004366"^^xsd:string ; + owl:hasValue "COG2937"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2937"^^xsd:string ; + owl:hasValue "0004366"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -52130,6 +52130,16 @@ bo:32330 a sybio:CDS , owl:NamedIndividual ; "131.0"@en ; tawny:name "32330"@en . +bo:13530 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C4H6O2"@en ; + rdfs:label "Cyclopropanecarboxylate"@en , "C4H6O2"@en ; + sybio:accession "47205575"^^xsd:string , "C16267"^^xsd:string , "1759-53-1"^^xsd:string ; + sybio:consumedBy bo:24202 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16267"@en ; + tawny:name "13530"@en . + bo:28840 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU19780"@en ; rdfs:label "cgeAA"@en , "BSU19780"@en , "cgeA"@en ; @@ -52159,16 +52169,6 @@ bo:28840 a sybio:CDS , owl:NamedIndividual ; "7.0"@en ; tawny:name "28840"@en . -bo:13530 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C4H6O2"@en ; - rdfs:label "Cyclopropanecarboxylate"@en , "C4H6O2"@en ; - sybio:accession "47205575"^^xsd:string , "C16267"^^xsd:string , "1759-53-1"^^xsd:string ; - sybio:consumedBy bo:24202 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16267"@en ; - tawny:name "13530"@en . - bo:9847 a bo:890 , sybio:Protein , owl:NamedIndividual , bo:320 ; rdfs:comment "AB hydrolase superfamily protein yisY"@en , "putative hydrolase;BSU10900;"@en ; rdfs:label "YisY"@en , "BSU10900"@en , "yisY"@en ; @@ -52776,11 +52776,11 @@ bo:17785 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.2.99.2S"@en , "COXS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018492"^^xsd:string ; + owl:hasValue "COG2080"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2080"^^xsd:string ; + owl:hasValue "0018492"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -53485,11 +53485,11 @@ bo:18489 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "sirohydrochlorin ferrochelatase"@en , "sirohydrochlorin ferro-lyase"@en , "GO:0051266"@en , "CysG"@en , "siroheme ferro-lyase"@en , "siroheme synthase"@en , "Met8P"@en , "SirB"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.99.1.4"^^xsd:string ; + owl:hasValue "GO:0051266"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051266"^^xsd:string ; + owl:hasValue "4.99.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -53610,7 +53610,7 @@ bo:18753 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0551"^^xsd:string ; + owl:hasValue "UNSPECIFIC-MONOOXYGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -53618,7 +53618,7 @@ bo:18753 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UNSPECIFIC-MONOOXYGENASE-RXN"^^xsd:string ; + owl:hasValue "e0551"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -53639,11 +53639,11 @@ bo:18841 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "PIGV"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000030"^^xsd:string ; + owl:hasValue "GT76"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT76"^^xsd:string ; + owl:hasValue "0000030"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -53920,6 +53920,18 @@ bo:10394 a sybio:Protein , bo:1615 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10394"@en . +bo:25792 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.13.20"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.13.20"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25792"@en . + bo:10482 a owl:NamedIndividual , sybio:Protein , bo:364 ; rdfs:comment "putative efflux protein;BSU33140"@en , "Uncharacterized MFS-type transporter yvqJ"@en ; rdfs:label "BSU33140"@en , "YvqJ"@en , "yvqJ"@en ; @@ -53938,18 +53950,6 @@ bo:10482 a owl:NamedIndividual , sybio:Protein , bo:364 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10482"@en . -bo:25792 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.13.20"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.13.20"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25792"@en . - bo:6799 a sybio:Protein , bo:1883 , bo:1884 , owl:NamedIndividual ; rdfs:comment "putative D-alanine esterase for lipoteichoic acid and wall teichoic acid synthesis;BSU38530"@en ; rdfs:label "DltD"@en , "BSU38530"@en , "Ipa-2r"@en ; @@ -53967,6 +53967,18 @@ bo:6799 a sybio:Protein , bo:1883 , bo:1884 , owl:NamedIn sybio:taxId "224308"@en ; tawny:name "6799"@en . +bo:25880 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "4.2.1.78"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "4.2.1.78"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25880"@en . + bo:10570 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU36990;hypothetical protein;"@en , "Uncharacterized protein ywkF"@en ; rdfs:label "ywkF"@en , "YwkF"@en , "BSU36990"@en ; @@ -53984,18 +53996,6 @@ bo:10570 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10570"@en . -bo:25880 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "4.2.1.78"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.78"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25880"@en . - bo:6887 a bo:184 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU14130"@en ; rdfs:label "YkuL"@en , "BSU14130"@en ; @@ -54143,11 +54143,11 @@ bo:24926 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "two-component sensor molecule"@en , "two-component sensor"@en , "two-component system sensor"@en , "GO:0000155"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.3.-"^^xsd:string ; + owl:hasValue "GO:0000155"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000155"^^xsd:string ; + owl:hasValue "2.7.3.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -54219,6 +54219,18 @@ bo:22205 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 , bo:11603 ; tawny:name "22205"@en . +bo:19369 a owl:Class , sybio:EC , owl:NamedIndividual ; + rdfs:comment "parsed ec from gene annotation"@en ; + rdfs:label "1.2.1.16"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.1.16"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "19369"@en . + a owl:Class ; rdfs:comment "The continual breakdown and regeneration of peptidoglycan required to maintain the cell wall."@en ; @@ -54235,18 +54247,6 @@ bo:22205 a owl:NamedIndividual , sybio:Reaction ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:19369 a owl:Class , sybio:EC , owl:NamedIndividual ; - rdfs:comment "parsed ec from gene annotation"@en ; - rdfs:label "1.2.1.16"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.16"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "19369"@en . - bo:31878 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU39280"@en ; rdfs:label "yxxE"@en , "BSU39280"@en ; @@ -54371,6 +54371,18 @@ bo:10269 a sybio:Protein , owl:NamedIndividual , bo:879 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10269"@en . +bo:25667 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.133"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.133"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25667"@en . + bo:10357 a owl:NamedIndividual , sybio:Protein , bo:572 ; rdfs:comment "UPF0118 membrane protein yrrI"@en , "BSU27420;putative permease"@en ; rdfs:label "BSU27420"@en , "YrrI"@en , "yrrI"@en ; @@ -54389,18 +54401,6 @@ bo:10357 a owl:NamedIndividual , sybio:Protein , bo:572 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10357"@en . -bo:25667 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.133"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.133"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25667"@en . - bo:5083 a sybio:Operon , owl:NamedIndividual ; rdfs:label "spoVK"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -54728,6 +54728,26 @@ bo:11098 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11098"@en . +bo:26496 a sybio:Protein , bo:761 , bo:760 , owl:NamedIndividual ; + rdfs:comment "2-oxoisovalerate dehydrogenase subunit alpha;derived protein"@en , "BSU24050;branched-chain alpha-keto acid dehydrogenase E1 subunit"@en ; + rdfs:label "bfmBAA"@en , "BkdAA"@en , "BfmB1a"@en , "BSU24050"@en , "BfmBAA"@en , "bkdAA"@en ; + sybio:AA "MSTNRHQALGLTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGIALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQVACENISDRAIGYGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIETISYRLTPHSSDDDDSSYRGREEVEEAKKSDPLLTYQAYLKETGLLSDEIEQTMLDEIMAIVNEATDEAENAPYAAPESALDYVYAK"@en ; + sybio:accession "P37940"^^xsd:string , "16079461"^^xsd:string , "938674"^^xsd:string , "BSU24050"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32419 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; + sybio:interactsWith bo:26313 , bo:26495 , bo:26277 , bo:26494 , bo:26311 , bo:26309 , bo:26314 , bo:26310 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "36332.535"^^xsd:string ; + sybio:pI "4.963478"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26499 , bo:26835 , bo:26497 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26496"@en . + bo:11186 a sybio:Protein , bo:906 , owl:NamedIndividual ; rdfs:comment "Transcriptional activator protein med"@en , "BSU11300;positive regulator of comK"@en ; rdfs:label "YjaW"@en , "BSU11300"@en , "Med"@en , "med"@en ; @@ -54749,26 +54769,6 @@ bo:11186 a sybio:Protein , bo:906 , owl:NamedIndividual ; tawny:name "11186"@en ; owl:sameAs bo:2591 . -bo:26496 a sybio:Protein , bo:761 , bo:760 , owl:NamedIndividual ; - rdfs:comment "2-oxoisovalerate dehydrogenase subunit alpha;derived protein"@en , "BSU24050;branched-chain alpha-keto acid dehydrogenase E1 subunit"@en ; - rdfs:label "bfmBAA"@en , "BkdAA"@en , "BfmB1a"@en , "BSU24050"@en , "BfmBAA"@en , "bkdAA"@en ; - sybio:AA "MSTNRHQALGLTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGIALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQVACENISDRAIGYGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIETISYRLTPHSSDDDDSSYRGREEVEEAKKSDPLLTYQAYLKETGLLSDEIEQTMLDEIMAIVNEATDEAENAPYAAPESALDYVYAK"@en ; - sybio:accession "P37940"^^xsd:string , "16079461"^^xsd:string , "938674"^^xsd:string , "BSU24050"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32419 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; - sybio:interactsWith bo:26313 , bo:26495 , bo:26277 , bo:26494 , bo:26311 , bo:26309 , bo:26314 , bo:26310 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "36332.535"^^xsd:string ; - sybio:pI "4.963478"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26499 , bo:26835 , bo:26497 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26496"@en . - bo:30074 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21430"@en ; rdfs:label "BSU21430"@en , "yomA"@en , "bhlB"@en ; @@ -54794,27 +54794,6 @@ bo:30074 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30074"@en . -bo:11274 a sybio:Protein , bo:322 , owl:NamedIndividual ; - rdfs:comment "50S ribosomal protein L3"@en , "ribosomal protein L3 (BL3);BSU01160"@en ; - rdfs:label "rplC"@en , "BSU01160"@en , "RplC"@en ; - sybio:AA "MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK"@en ; - sybio:accession "P42920"^^xsd:string , "BSU01160"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29187 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11268 , bo:11267 , bo:11271 , bo:11266 , bo:11265 , bo:11242 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "22682.24"^^xsd:string ; - sybio:pI "9.832268"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11281 , bo:11277 , bo:9218 , bo:11276 , bo:9165 , bo:11291 , bo:11290 , bo:11286 , bo:11285 , bo:9361 , bo:11294 , bo:11280 , bo:11289 , bo:11275 , bo:26902 , bo:11298 , bo:11284 , bo:11283 , bo:11306 , bo:11279 , bo:9360 , bo:11278 , bo:11293 , bo:11301 , bo:11288 , bo:11300 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11274"@en . - bo:26584 a owl:NamedIndividual , bo:719 , sybio:Protein , bo:720 ; rdfs:comment "BSU28730;arabinose/arabinan permease;"@en , "L-arabinose transport system permease protein araQ;derived protein"@en ; rdfs:label "BSU28730"@en , "AraQ"@en , "YseE"@en , "araQ"@en ; @@ -54835,23 +54814,26 @@ bo:26584 a owl:NamedIndividual , bo:719 , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "26584"@en . -bo:11362 a bo:514 , bo:513 , owl:NamedIndividual , bo:512 , sybio:Protein ; - rdfs:comment "BSU03510;surfactin synthetase"@en , "Surfactin synthetase subunit 3;SrfAC surfactin synthetase"@en ; - rdfs:label "srfAC"@en , "SrfAC"@en , "BSU03510"@en ; - sybio:AA "MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVS"@en ; - sybio:accession "Q08787"^^xsd:string , "BSU03510"^^xsd:string , "Q71EF6"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; +bo:11274 a sybio:Protein , bo:322 , owl:NamedIndividual ; + rdfs:comment "50S ribosomal protein L3"@en , "ribosomal protein L3 (BL3);BSU01160"@en ; + rdfs:label "rplC"@en , "BSU01160"@en , "RplC"@en ; + sybio:AA "MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK"@en ; + sybio:accession "P42920"^^xsd:string , "BSU01160"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30966 ; + sybio:encodedBy bo:29187 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "143866.19"^^xsd:string ; - sybio:pI "5.181587"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26942 , bo:26833 ; - sybio:taxId "224308"@en ; - tawny:name "11362"@en . + sybio:hasFunction , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11268 , bo:11267 , bo:11271 , bo:11266 , bo:11265 , bo:11242 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "22682.24"^^xsd:string ; + sybio:pI "9.832268"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11281 , bo:11277 , bo:9218 , bo:11276 , bo:9165 , bo:11291 , bo:11290 , bo:11286 , bo:11285 , bo:9361 , bo:11294 , bo:11280 , bo:11289 , bo:11275 , bo:26902 , bo:11298 , bo:11284 , bo:11283 , bo:11306 , bo:11279 , bo:9360 , bo:11278 , bo:11293 , bo:11301 , bo:11288 , bo:11300 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11274"@en . bo:30162 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24300;"@en ; @@ -54896,26 +54878,23 @@ bo:26672 a owl:NamedIndividual , sybio:Protein , bo:984 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26672"@en . -bo:11450 a bo:401 , bo:402 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "two-component response regulator [YrkQ];BSU26430;"@en , "Uncharacterized transcriptional regulatory protein yrkP"@en ; - rdfs:label "BSU26430"@en , "YrkP"@en , "yrkP"@en ; - sybio:AA "MAYRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSLDLVILDIMMPGISGIETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTIYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIYESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRFGAS"@en ; - sybio:accession "BSU26430"^^xsd:string , "P54443"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:31840 ; +bo:11362 a bo:514 , bo:513 , owl:NamedIndividual , bo:512 , sybio:Protein ; + rdfs:comment "BSU03510;surfactin synthetase"@en , "Surfactin synthetase subunit 3;SrfAC surfactin synthetase"@en ; + rdfs:label "srfAC"@en , "SrfAC"@en , "BSU03510"@en ; + sybio:AA "MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVS"@en ; + sybio:accession "Q08787"^^xsd:string , "BSU03510"^^xsd:string , "Q71EF6"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30966 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:hasFunction , , , , , ; sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "26793.72"^^xsd:string ; - sybio:pI "5.792976"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:relatedTo bo:9666 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11450"@en ; - owl:sameAs bo:6987 . + sybio:molecularWeight "143866.19"^^xsd:string ; + sybio:pI "5.181587"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26942 , bo:26833 ; + sybio:taxId "224308"@en ; + tawny:name "11362"@en . bo:30250 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26230"@en ; @@ -54962,6 +54941,27 @@ bo:26760 a bo:1763 , bo:1762 , sybio:Protein , owl:NamedIn sybio:taxId "[224308, 1423]"@en ; tawny:name "26760"@en . +bo:11450 a bo:401 , bo:402 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "two-component response regulator [YrkQ];BSU26430;"@en , "Uncharacterized transcriptional regulatory protein yrkP"@en ; + rdfs:label "BSU26430"@en , "YrkP"@en , "yrkP"@en ; + sybio:AA "MAYRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSLDLVILDIMMPGISGIETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTIYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIYESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRFGAS"@en ; + sybio:accession "BSU26430"^^xsd:string , "P54443"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:31840 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "26793.72"^^xsd:string ; + sybio:pI "5.792976"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:relatedTo bo:9666 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11450"@en ; + owl:sameAs bo:6987 . + bo:31929 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU40270"@en ; rdfs:label "yycP"@en , "BSU40270"@en ; @@ -55005,19 +55005,19 @@ bo:19508 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "amylose isomerase"@en , "alpha-1 4-glucan:alpha-1 4-glucan-6-glycosyltransferase"@en , "Q-enzyme"@en , "1"@en , "1,4-alpha-glucan branching enzyme"@en , "alpha-glucan-branching glycosyltransferase"@en , "enzyme Q"@en , "activity"@en , "plant branching enzyme"@en , "branching enzyme"@en , "1 4-alpha-D-glucan:1 4-alpha-D-glucan"@en , "starch branching enzyme"@en , "glycogen branching enzyme"@en , "branching glycosyltransferase"@en , "GO:0003844"@en , "enzymatic branching factor"@en , "glucosan transglycosylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.18"^^xsd:string ; + owl:hasValue "GO:0003844"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11632 \"1,4-alpha-glucan branching enzyme activity\""^^xsd:string ; + owl:hasValue "GLYCOGEN-BRANCH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCOGEN-BRANCH-RXN"^^xsd:string ; + owl:hasValue "11632 \"1,4-alpha-glucan branching enzyme activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003844"^^xsd:string ; + owl:hasValue "2.4.1.18"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -55212,19 +55212,19 @@ bo:32846 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0004585"@en , "L-ornithine carbamoyltransferase"@en , "L-ornithine carbamyltransferase"@en , "ornithine transcarbamylase"@en , "ornithine carbamyltransferase"@en , "OTC"@en , "L-ornithine transcarbamylase"@en , "ornithine carbamoyltransferase"@en , "citrulline phosphorylase"@en , "carbamoyl-phosphate:L-ornithine carbamoyltransferase"@en , "carbamylphosphate-ornithine transcarbamylase"@en , "OTCase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ORNCARBAMTRANSFER-RXN"^^xsd:string ; + owl:hasValue "GO:0004585"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004585"^^xsd:string ; + owl:hasValue "ORNCARBAMTRANSFER-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12530 \"ornithine carbamoyltransferase activity\""^^xsd:string ; + owl:hasValue "2.1.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.3.3"^^xsd:string ; + owl:hasValue "12530 \"ornithine carbamoyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -55262,19 +55262,19 @@ bo:32934 a owl:NamedIndividual , sybio:CDS ; rdfs:label "EnvZ"@en , "GO:0004673"@en , "HK1"@en , "protein-histidine kinase"@en , "histidine kinase"@en , "Sln1p"@en , "protein kinase"@en , "histidine protein kinase"@en , "ATP:protein-L-histidine N-phosphotransferase"@en , "HP165"@en , "protein histidine kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004673"^^xsd:string ; + owl:hasValue "GO:0008896"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.13.3"^^xsd:string ; + owl:hasValue "GO:0004673"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.13.3-RXN"^^xsd:string ; + owl:hasValue "2.7.13.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008896"^^xsd:string ; + owl:hasValue "2.7.13.3-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -55825,7 +55825,7 @@ bo:32809 a sybio:CDS , owl:NamedIndividual ; rdfs:label "phosphoribosyl-ATP pyrophosphatase"@en , "diphosphohydrolase"@en , "phosphoribosyladenosine triphosphate pyrophosphatase"@en , "GO:0004636"@en , "phosphoribosyl-ATP diphosphatase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HISTPRATPHYD-RXN"^^xsd:string ; + owl:hasValue "GO:0004636"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -55833,7 +55833,7 @@ bo:32809 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004636"^^xsd:string ; + owl:hasValue "HISTPRATPHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -55845,11 +55845,11 @@ bo:32809 a sybio:CDS , owl:NamedIndividual ; rdfs:label "aminoacyl-tRNA ligase"@en , "aminoacyl-tRNA synthetase"@en , "GO:0004812"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004812"^^xsd:string ; + owl:hasValue "6.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.-"^^xsd:string ; + owl:hasValue "GO:0004812"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -55878,11 +55878,11 @@ bo:15880 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "GCA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033968"^^xsd:string ; + owl:hasValue "Q9L5D6"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9L5D6"^^xsd:string ; + owl:hasValue "0033968"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -56265,6 +56265,18 @@ bo:15931 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01259+K11142"@en ; tawny:name "15931"@en . + + a owl:Class ; + rdfs:comment "The process of removing one or more phosphoric residues from a protein."@en ; + rdfs:label "protein amino acid dephosphorylation"@en , "GO:0006470"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006470"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16585 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "phosphinothricin biosynthesis protein PhpD"@en ; rdfs:label "PHPD"@en ; @@ -56278,18 +56290,6 @@ bo:16585 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12905"@en ; tawny:name "16585"@en . - - a owl:Class ; - rdfs:comment "The process of removing one or more phosphoric residues from a protein."@en ; - rdfs:label "protein amino acid dephosphorylation"@en , "GO:0006470"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006470"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28168 a sybio:RBS , owl:NamedIndividual ; rdfs:label "ykgA_RBS"@en ; sybio:NA "CACTTTAGGAGGAAAAACAA"^^xsd:string ; @@ -56300,16 +56300,6 @@ bo:28168 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31581 ; tawny:name "28168"@en . -bo:16673 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "phosphogluconate 2-dehydrogenase [EC:1.1.1.43]"@en ; - rdfs:label "E1.1.1.43"@en ; - sybio:accession "0008114"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16674 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00032"@en ; - tawny:name "16673"@en . - bo:28256 a sybio:RBS , owl:NamedIndividual ; rdfs:label "cggR_RBS"@en ; sybio:NA "AAGGAAGGAACGTTTGAGTC"^^xsd:string ; @@ -56320,6 +56310,16 @@ bo:28256 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:32075 ; tawny:name "28256"@en . +bo:16673 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "phosphogluconate 2-dehydrogenase [EC:1.1.1.43]"@en ; + rdfs:label "E1.1.1.43"@en ; + sybio:accession "0008114"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16674 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00032"@en ; + tawny:name "16673"@en . + bo:16761 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "beta-amylase [EC:3.2.1.2]"@en ; rdfs:label "E3.2.1.2"@en ; @@ -56728,15 +56728,15 @@ bo:83 a sybio:RNA , owl:NamedIndividual ; rdfs:label "SirC"@en , "precorrin-2 oxidase"@en , "Met8p"@en , "CysG"@en , "precorrin-2:NAD+ oxidoreductase"@en , "1 3-dimethyluroporphyrinogen III dehydrogenase"@en , "GO:0043115"@en , "precorrin-2 dehydrogenase"@en , "siroheme synthase"@en , "dihydrosirohydrochlorin dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.76"^^xsd:string ; + owl:hasValue "GO:0043115"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043115"^^xsd:string ; + owl:hasValue "DIMETHUROPORDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIMETHUROPORDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.3.1.76"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -56777,16 +56777,6 @@ bo:4895 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4894 ; tawny:name "4895"@en . -bo:16548 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "D-3-phosphoglycerate dehydrogenase"@en ; - rdfs:label "PHPE"@en ; - sybio:accession "Q5IW39"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16547 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12906"@en ; - tawny:name "16548"@en . - a owl:Class ; rdfs:comment "The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; @@ -56799,14 +56789,15 @@ bo:16548 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16636 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; - rdfs:label "TDPX"@en ; - rdfs:subClassOf sybio:KOEN ; +bo:16548 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "D-3-phosphoglycerate dehydrogenase"@en ; + rdfs:label "PHPE"@en ; + sybio:accession "Q5IW39"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16547 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; - tawny:name "16636"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12906"@en ; + tawny:name "16548"@en . bo:4983 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "cheV_terminator"@en ; @@ -56820,6 +56811,15 @@ bo:4983 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4982 ; tawny:name "4983"@en . +bo:16636 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "glutathione peroxidase-type tryparedoxin peroxidase [EC:1.11.1.-]"@en ; + rdfs:label "TDPX"@en ; + rdfs:subClassOf sybio:KOEN ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11207"@en ; + tawny:name "16636"@en . + bo:28219 a sybio:RBS , owl:NamedIndividual ; rdfs:label "cwlH_RBS"@en ; sybio:NA "GGGAGGGATAGAA"^^xsd:string ; @@ -57010,11 +57010,11 @@ bo:17289 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "L-lysine 2 3-aminomutase"@en , "lysine 2,3-aminomutase"@en , "GO:0050066"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "LYSINE-23-AMINOMUTASE-RXN"^^xsd:string ; + owl:hasValue "GO:0050066"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050066"^^xsd:string ; + owl:hasValue "LYSINE-23-AMINOMUTASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -57060,11 +57060,11 @@ bo:17377 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.1.1.82"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0039"^^xsd:string ; + owl:hasValue "COG2055"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2055"^^xsd:string ; + owl:hasValue "COG0039"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -57189,27 +57189,6 @@ bo:664 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "664"@en . -bo:17641 a owl:Class , sybio:KOEN , owl:NamedIndividual ; - rdfs:comment "cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]"@en ; - rdfs:label "ALIA"@en ; - rdfs:subClassOf sybio:KOEN ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04116"@en ; - tawny:name "17641"@en . - -bo:23499 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "1,2-diacylglycerol 3-D-glucosyltransferase"@en , "cpd:C00641 => cpd:C00641"@en , "C00029 + C00641 <=> C00015 + C04046"@en , "UDPglucose"@en ; - sybio:accession "RN:R02689"^^xsd:string ; - sybio:catalyzedBy bo:19778 ; - sybio:catalyzingClass bo:19779 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11660 ; - sybio:sharesIntermediate bo:23489 , bo:23512 ; - tawny:name "23499"@en . - bo:29224 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01650"@en ; rdfs:label "BSU01650"@en , "ybbC"@en , "yzbB"@en ; @@ -57235,6 +57214,27 @@ bo:29224 a sybio:CDS , owl:NamedIndividual ; "7.0"@en ; tawny:name "29224"@en . +bo:17641 a owl:Class , sybio:KOEN , owl:NamedIndividual ; + rdfs:comment "cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]"@en ; + rdfs:label "ALIA"@en ; + rdfs:subClassOf sybio:KOEN ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04116"@en ; + tawny:name "17641"@en . + +bo:23499 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "1,2-diacylglycerol 3-D-glucosyltransferase"@en , "cpd:C00641 => cpd:C00641"@en , "C00029 + C00641 <=> C00015 + C04046"@en , "UDPglucose"@en ; + sybio:accession "RN:R02689"^^xsd:string ; + sybio:catalyzedBy bo:19778 ; + sybio:catalyzingClass bo:19779 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11660 ; + sybio:sharesIntermediate bo:23489 , bo:23512 ; + tawny:name "23499"@en . + bo:752 a owl:Class ; rdfs:label "COG0505"@en ; rdfs:subClassOf bo:187 , bo:185 , sybio:COG ; @@ -57583,11 +57583,11 @@ sybio:sharesIntermediate rdfs:label "cell-division cycle"@en , "GO:0007049"@en , "cell cycle"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007049"^^xsd:string ; + owl:hasValue "Cell_cycle"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cell_cycle"^^xsd:string ; + owl:hasValue "GO:0007049"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -57645,11 +57645,11 @@ bo:17428 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "PPC"@en , "E4.1.1.31"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008964"^^xsd:string ; + owl:hasValue "COG2352"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2352"^^xsd:string ; + owl:hasValue "0008964"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -57855,11 +57855,11 @@ bo:18169 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "CBIP"@en , "E6.3.5.10"@en , "COBQ"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0051921"^^xsd:string ; + owl:hasValue "COG1492"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1492"^^xsd:string ; + owl:hasValue "0051921"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -58207,11 +58207,11 @@ bo:19174 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P30986"^^xsd:string ; + owl:hasValue "0050468"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050468"^^xsd:string ; + owl:hasValue "P30986"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -58358,6 +58358,16 @@ bo:25296 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25296"@en . +bo:25384 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C15778 + C00006 <=> C05440 + C00005 + C00080"@en , "cpd:C05440 <=> cpd:C05440"@en ; + sybio:accession "RN:R07506"^^xsd:string ; + sybio:catalyzedBy bo:18637 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25384"@en . + bo:10074 a sybio:Protein , owl:NamedIndividual , bo:612 ; rdfs:comment "Putative hydrolase ydeN"@en , "BSU05260;alpha/beta hydrolase"@en ; rdfs:label "BSU05260"@en , "ydeN"@en , "YdeN"@en ; @@ -58376,15 +58386,16 @@ bo:10074 a sybio:Protein , owl:NamedIndividual , bo:612 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10074"@en . -bo:25384 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C15778 + C00006 <=> C05440 + C00005 + C00080"@en , "cpd:C05440 <=> cpd:C05440"@en ; - sybio:accession "RN:R07506"^^xsd:string ; - sybio:catalyzedBy bo:18637 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25384"@en . +bo:25472 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "ferulate 5-hydroxylase - reversible"@en ; + rdfs:label "cpd:C01494 <=> cpd:C01494"@en , "C01494 + C00005 + C00080 + C00007 <=> C05619 + C00006 + C00001"@en ; + sybio:accession "RN:R07440"^^xsd:string ; + sybio:catalyzedBy bo:19225 ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25472"@en . bo:10162 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndividual ; rdfs:comment "PpsA plipastatin synthetase;Plipastatin synthetase subunit A"@en , "BSU18340;plipastatin synthetase"@en ; @@ -58404,17 +58415,6 @@ bo:10162 a sybio:Protein , bo:512 , bo:513 , owl:NamedIndi sybio:taxId "224308"@en ; tawny:name "10162"@en . -bo:25472 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "ferulate 5-hydroxylase - reversible"@en ; - rdfs:label "cpd:C01494 <=> cpd:C01494"@en , "C01494 + C00005 + C00080 + C00007 <=> C05619 + C00006 + C00001"@en ; - sybio:accession "RN:R07440"^^xsd:string ; - sybio:catalyzedBy bo:19225 ; - sybio:catalyzingClass bo:21056 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25472"@en . - sybio:evidence a owl:AnnotationProperty . bo:6479 a sybio:Operon , owl:NamedIndividual ; @@ -58425,6 +58425,18 @@ bo:6479 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yqdB"@en ; tawny:name "6479"@en . +bo:25560 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.101"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.101"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25560"@en . + bo:10250 a bo:888 , owl:NamedIndividual , sybio:Protein , bo:1313 ; rdfs:comment "damage inducible, Na+ driven multidrug efflux pump;BSU21710"@en , "Probable multidrug resistance protein ypnP"@en ; rdfs:label "ypnP"@en , "DinF"@en , "YpnP"@en , "BSU21710"@en ; @@ -58444,18 +58456,6 @@ bo:10250 a bo:888 , owl:NamedIndividual , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "10250"@en . -bo:25560 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.101"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.101"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25560"@en . - bo:6567 a sybio:TF , owl:NamedIndividual ; rdfs:comment "Fnr-dependent anaerobic transcription"@en , "transcriptional regulator"@en ; rdfs:label "YwiD"@en , "BSU37290"@en , "ArfM"@en ; @@ -59515,11 +59515,11 @@ bo:14592 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0003700"@en , "transcription factor"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000130"^^xsd:string ; + owl:hasValue "4325 \"transcription factor activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4325 \"transcription factor activity\""^^xsd:string ; + owl:hasValue "GO:0000130"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -59589,11 +59589,11 @@ bo:27181 a sybio:FFL , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.1"^^xsd:string ; + owl:hasValue "CARBODEHYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CARBODEHYDRAT-RXN"^^xsd:string ; + owl:hasValue "4.2.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -59624,6 +59624,16 @@ bo:32438 a sybio:CDS , owl:NamedIndividual ; "6.0"@en ; tawny:name "32438"@en . +bo:13638 a owl:NamedIndividual , sybio:Compound ; + rdfs:label "Thiamine biosynthesis intermediate 4"@en , "C15813"@en ; + sybio:accession "47205138"^^xsd:string , "C15813"^^xsd:string ; + sybio:consumedBy bo:24511 , bo:24500 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24511 , bo:24500 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15813"@en ; + tawny:name "13638"@en . + bo:28948 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU22790"@en ; rdfs:label "hbs"@en , "BSU22790"@en , "dbpA"@en ; @@ -59654,16 +59664,6 @@ bo:28948 a owl:NamedIndividual , sybio:CDS ; "79.0"@en ; tawny:name "28948"@en . -bo:13638 a owl:NamedIndividual , sybio:Compound ; - rdfs:label "Thiamine biosynthesis intermediate 4"@en , "C15813"@en ; - sybio:accession "47205138"^^xsd:string , "C15813"^^xsd:string ; - sybio:consumedBy bo:24511 , bo:24500 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24511 , bo:24500 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15813"@en ; - tawny:name "13638"@en . - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain."@en ; @@ -60160,11 +60160,11 @@ bo:14731 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "GCD"@en , "E1.1.5.2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2133"^^xsd:string ; + owl:hasValue "0008876"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008876"^^xsd:string ; + owl:hasValue "COG2133"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -60244,11 +60244,11 @@ bo:21683 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "protein metabolism"@en , "protein metabolic process"@en , "GO:0019538"@en , "protein metabolism and modification"@en , "protein metabolic process and modification"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019538"^^xsd:string ; + owl:hasValue "GO:0006411"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006411"^^xsd:string ; + owl:hasValue "GO:0019538"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -60276,19 +60276,19 @@ bo:21771 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "beta-ketoacyl-acyl-carrier reductase"@en , "beta-ketoacyl acyl carrier protein reductase"@en , "3-oxoacyl-[acyl-carrier protein] reductase"@en , "3-ketoacyl acyl carrier protein reductase"@en , "beta-ketoacyl reductase"@en , "3-oxoacyl-ACPreductase"@en , "3-oxoacyl-[acyl-carrier-protein] reductase"@en , "beta-ketoacyl-acyl carrier protein reductase"@en , "3-oxoacyl-acyl-carrier-protein reductase"@en , "oxidoreductase"@en , "GO:0004316"@en , "beta-ketoacyl-ACP reductase"@en , "beta-ketoacyl thioester reductase"@en , "3-oxoacyl-ACP reductase"@en , "NADPH-specific 3-oxoacyl-acylcarrier proteinreductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "76148 \"3-oxoacyl-[acyl-carrier-protein] reductase activity\""^^xsd:string ; + owl:hasValue "GO:0004316"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.100"^^xsd:string ; + owl:hasValue "76148 \"3-oxoacyl-[acyl-carrier-protein] reductase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004316"^^xsd:string ; + owl:hasValue "3-OXOACYL-ACP-REDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-OXOACYL-ACP-REDUCT-RXN"^^xsd:string ; + owl:hasValue "1.1.1.100"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -60717,11 +60717,11 @@ bo:21734 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "SpeB"@en , "GO:0008783"@en , "agmatine ureohydrolase"@en , "agmatinase"@en , "agmatine amidinohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.3.11"^^xsd:string ; + owl:hasValue "AGMATIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AGMATIN-RXN"^^xsd:string ; + owl:hasValue "26116 \"agmatinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -60729,7 +60729,7 @@ bo:21734 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "26116 \"agmatinase activity\""^^xsd:string ; + owl:hasValue "3.5.3.11"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -60902,6 +60902,16 @@ bo:16353 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00543"@en ; tawny:name "16353"@en . +bo:28024 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "ybaK_RBS"@en ; + sybio:NA "GGAGAGTGAATTTAT"^^xsd:string ; + sybio:begin "156094"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "156108"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30844 ; + tawny:name "28024"@en . + bo:16441 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "coumermycin A biosynthesis protein CouN2"@en ; rdfs:label "COUN2"@en ; @@ -60927,16 +60937,6 @@ bo:22299 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:22297 ; tawny:name "22299"@en . -bo:28024 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "ybaK_RBS"@en ; - sybio:NA "GGAGAGTGAATTTAT"^^xsd:string ; - sybio:begin "156094"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "156108"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30844 ; - tawny:name "28024"@en . - a owl:Class ; rdfs:comment "Collapsed CV Set"@en ; @@ -60956,16 +60956,6 @@ bo:28024 a owl:NamedIndividual , sybio:RBS ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:22387 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "C06044 + C00029 <=> C06046 + C00015"@en , "cpd:C06044 => cpd:C06044"@en , "UDP-glucose"@en , "4-hydroxyphenylethanol 1-O-beta-D-glucosyltransferase"@en ; - sybio:accession "RN:R05083"^^xsd:string ; - sybio:catalyzingClass bo:20664 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11607 ; - tawny:name "22387"@en . - bo:28112 a sybio:Shim , owl:NamedIndividual ; rdfs:label "yjcA_RBS_upstream"@en ; sybio:NA "TG"^^xsd:string ; @@ -60976,6 +60966,16 @@ bo:28112 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28111 ; tawny:name "28112"@en . +bo:22387 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "C06044 + C00029 <=> C06046 + C00015"@en , "cpd:C06044 => cpd:C06044"@en , "UDP-glucose"@en , "4-hydroxyphenylethanol 1-O-beta-D-glucosyltransferase"@en ; + sybio:accession "RN:R05083"^^xsd:string ; + sybio:catalyzingClass bo:20664 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11607 ; + tawny:name "22387"@en . + a owl:Class ; rdfs:comment "The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes."@en ; @@ -61207,17 +61207,6 @@ bo:17182 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019"@en ; tawny:name "17182"@en . -bo:293 a owl:Class ; - rdfs:label "COG1211"@en ; - rdfs:subClassOf bo:233 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1211"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "293"@en . - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Interacting selectively and non-covalently with penicillin, any antibiotic that contains the condensed beta-lactamthiazolidine ring system."@en ; @@ -61241,6 +61230,17 @@ bo:1025 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1025"@en . +bo:293 a owl:Class ; + rdfs:label "COG1211"@en ; + rdfs:subClassOf bo:233 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1211"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "293"@en . + bo:10891 a bo:661 , bo:864 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized zinc-type alcohol dehydrogenase-like protein yycR"@en , "putative dehydrogenase;BSU40250"@en ; rdfs:label "BSU40250"@en , "yycR"@en , "YycR"@en ; @@ -61269,27 +61269,27 @@ bo:17270 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04628"@en ; tawny:name "17270"@en . -bo:381 a owl:Class ; - rdfs:label "COG0449"@en ; - rdfs:subClassOf bo:189 , sybio:COG ; +bo:1113 a owl:Class ; + rdfs:label "COG0631"@en ; + rdfs:subClassOf bo:210 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0449"^^xsd:string ; + owl:hasValue "COG0631"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "381"@en . + tawny:name "1113"@en . -bo:1113 a owl:Class ; - rdfs:label "COG0631"@en ; - rdfs:subClassOf bo:210 , sybio:COG ; +bo:381 a owl:Class ; + rdfs:label "COG0449"@en ; + rdfs:subClassOf bo:189 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0631"^^xsd:string ; + owl:hasValue "COG0449"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1113"@en . + tawny:name "381"@en . a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; @@ -61297,7 +61297,7 @@ bo:1113 a owl:Class ; rdfs:label "undecaprenyl diphosphate synthetase"@en , "bactoprenyl-diphosphate synthase"@en , "undecaprenyl pyrophosphate synthetase"@en , "undecaprenyl pyrophosphate synthase"@en , "di-trans poly-cis-undecaprenyl-diphosphate synthase"@en , "undecaprenyl-diphosphate synthase"@en , "di-trans,poly-cis-decaprenylcistransferase"@en , "di-trans poly-cis-decaprenyl-diphosphate:isopentenyl-diphosphate undecaprenylcistransferase"@en , "GO:0008834"@en , "UPP synthetase"@en , "undecaprenyl diphosphate synthase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.31"^^xsd:string ; + owl:hasValue "GO:0008834"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -61305,7 +61305,7 @@ bo:1113 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008834"^^xsd:string ; + owl:hasValue "2.5.1.31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -61316,11 +61316,11 @@ bo:18949 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "GCNT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008109"^^xsd:string ; + owl:hasValue "GT14"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT14"^^xsd:string ; + owl:hasValue "0008109"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -61345,55 +61345,55 @@ bo:1201 a owl:Class ; rdfs:label "modulation of cell cycle progression"@en , "cell cycle regulator"@en , "tumor suppressor"@en , "regulation of cell cycle"@en , "regulation of progression through cell cycle"@en , "cell cycle regulation"@en , "cell cycle modulation"@en , "cell cycle control"@en , "regulation of cell cycle progression"@en , "GO:0051726"@en , "control of cell cycle progression"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "462379 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "448691 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "501179 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "481114 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "429000 \"Activation of Cdc25C\""^^xsd:string ; + owl:hasValue "462418 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "462418 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "156711 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "162657 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "542564 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "481147 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "514372 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558068 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "592813 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487948 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "514352 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "156711 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "156699 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546191 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "540566 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "590491 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "534968 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448691 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "540581 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "529710 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "529716 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -61401,119 +61401,119 @@ bo:1201 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "556150 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "547884 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542564 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "590491 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000074"^^xsd:string ; + owl:hasValue "546209 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "540581 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "469816 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "156678 \"Activation of Cdc25C\""^^xsd:string ; + owl:hasValue "523399 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531433 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "590501 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "451327 \"Activation of Cdc25C\""^^xsd:string ; + owl:hasValue "440597 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552461 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "526632 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526632 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "529710 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517799 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "552461 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "529716 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "523416 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "556130 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "429000 \"Activation of Cdc25C\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "534973 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "451327 \"Activation of Cdc25C\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "514352 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "531433 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "590501 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "536805 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "156699 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "462379 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469816 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "556150 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "550949 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "534973 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "481114 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "156678 \"Activation of Cdc25C\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "501212 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "556130 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "440632 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "GO:0000074"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051726"^^xsd:string ; + owl:hasValue "501212 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "523416 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "501179 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "534968 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "162657 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "540566 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "517799 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "514372 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "GO:0051726"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547884 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "481147 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592813 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "558068 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "440597 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "550949 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -61521,15 +61521,15 @@ bo:1201 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "523399 \"Inactivation of Myt1 kinase\""^^xsd:string ; + owl:hasValue "440632 \"Inactivation of Wee1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546209 \"Inactivation of Wee1 kinase\""^^xsd:string ; + owl:hasValue "487948 \"Polo-like kinase mediated events\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536805 \"Polo-like kinase mediated events\""^^xsd:string ; + owl:hasValue "546191 \"Inactivation of Myt1 kinase\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -61575,6 +61575,14 @@ bo:4487 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yclN,yclO,yclP,yclQ"@en ; tawny:name "4487"@en . +bo:4575 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydhU"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30783 ; + sybio:operonGenes "ydhU"@en ; + tawny:name "4575"@en . + a owl:Class ; rdfs:comment "The directed movement of inorganic anions into, out of, within or between cells by means of some external agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage."@en ; @@ -61596,13 +61604,13 @@ bo:16228 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01857"@en ; tawny:name "16228"@en . -bo:4575 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydhU"@en ; +bo:4663 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yflL"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30783 ; - sybio:operonGenes "ydhU"@en ; - tawny:name "4575"@en . + sybio:hasPart bo:28602 ; + sybio:operonGenes "yflL"@en ; + tawny:name "4663"@en . bo:16316 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]"@en ; @@ -61614,14 +61622,6 @@ bo:16316 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00452"@en ; tawny:name "16316"@en . -bo:4663 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yflL"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28602 ; - sybio:operonGenes "yflL"@en ; - tawny:name "4663"@en . - bo:16404 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "dehydroquinate synthase II [EC:1.4.1.-]"@en ; rdfs:label "K11646"@en ; @@ -61650,7 +61650,7 @@ bo:4751 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "nitrogen fixation"@en , "GO:0009399"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "N2FIX-PWY"^^xsd:string ; + owl:hasValue "Nitrogen_fixation"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -61658,7 +61658,7 @@ bo:4751 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Nitrogen_fixation"^^xsd:string ; + owl:hasValue "N2FIX-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -61782,6 +61782,18 @@ bo:19954 a owl:Class , owl:NamedIndividual , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19954"@en . +bo:25988 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.7.8.22"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.7.8.22"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25988"@en . + bo:10678 a bo:405 , sybio:Protein , owl:NamedIndividual , bo:1370 ; rdfs:comment "Amino-acid permease rocE"@en , "arginine/ornithine/gamma-aminobutyrate permease;BSU40330;"@en ; rdfs:label "BSU40330"@en , "RocE"@en , "rocE"@en ; @@ -61801,18 +61813,6 @@ bo:10678 a bo:405 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10678"@en . -bo:25988 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.7.8.22"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.22"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25988"@en . - bo:17057 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphatidylinositol-bisphosphatase [EC:3.1.3.36]"@en ; rdfs:label "E3.1.3.36"@en ; @@ -61969,11 +61969,11 @@ bo:10942 a bo:512 , bo:513 , sybio:Protein , owl:NamedIndi owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016302"^^xsd:string ; + owl:hasValue "GO:0016791"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016791"^^xsd:string ; + owl:hasValue "GO:0016302"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -62166,22 +62166,6 @@ bo:30483 a sybio:CDS , owl:NamedIndividual ; "125.0"@en ; tawny:name "30483"@en . -bo:11683 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00628.png"@en ; - rdfs:label "Fluorene degradation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00628"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11614 ; - sybio:derivesFrom bo:11684 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00628"@en ; - tawny:name "11683"@en . - bo:26993 a bo:687 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Phosphoribosylglycinamide formyltransferase;derived protein"@en , "phosphoribosylglycinamide formyltransferase;BSU06510"@en ; rdfs:label "purN"@en , "PurN"@en , "BSU06510"@en ; @@ -62201,6 +62185,22 @@ bo:26993 a bo:687 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26993"@en . +bo:11683 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00628.png"@en ; + rdfs:label "Fluorene degradation"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00628"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11614 ; + sybio:derivesFrom bo:11684 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00628"@en ; + tawny:name "11683"@en . + bo:18062 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "cytochrome c heme-lyase [EC:4.4.1.17]"@en ; rdfs:label "E4.4.1.17"@en ; @@ -62283,15 +62283,15 @@ bo:24096 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETYL-COA-CARBOXYLTRANSFER-RXN"^^xsd:string ; + owl:hasValue "6.4.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.4.1.2"^^xsd:string ; + owl:hasValue "GO:0003989"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003989"^^xsd:string ; + owl:hasValue "ACETYL-COA-CARBOXYLTRANSFER-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -62658,11 +62658,11 @@ bo:18025 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.2.99.5G"@en , "FWDG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1145"^^xsd:string ; + owl:hasValue "0018493"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018493"^^xsd:string ; + owl:hasValue "COG1145"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -62979,11 +62979,11 @@ bo:27697 a sybio:Promoter , owl:NamedIndividual , sybio:SigAPromot rdfs:label "GO:0016805"@en , "dipeptidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2731 \"dipeptidase activity\""^^xsd:string ; + owl:hasValue "GO:0016805"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016805"^^xsd:string ; + owl:hasValue "2731 \"dipeptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -63148,10 +63148,6 @@ bo:19030 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "glucuronyl/N-acetylglucosaminyl transferase EXT2 [EC:2.4.1.2242.4.1.225]"@en ; rdfs:label "EXT2"@en ; rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT64"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "0050508"^^xsd:string ; owl:onProperty sybio:accession @@ -63164,6 +63160,10 @@ bo:19030 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:hasValue "0050509"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GT64"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K02366+K02367"@en ; @@ -63244,6 +63244,17 @@ bo:30409 a owl:NamedIndividual , sybio:CDS ; "39.0"@en ; tawny:name "30409"@en . +bo:11609 a owl:Class ; + rdfs:comment "Abstract referenced KO Pathway"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:MAP00950"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11609"@en . + bo:26919 a sybio:Protein , owl:NamedIndividual , bo:437 ; rdfs:comment "Probable D-galactarate dehydratase;derived protein"@en , "BSU02510;D-galactarate dehydratase"@en ; rdfs:label "GarD"@en , "BSU02510"@en , "garD"@en , "YcbH"@en ; @@ -63262,17 +63273,6 @@ bo:26919 a sybio:Protein , owl:NamedIndividual , bo:437 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26919"@en . -bo:11609 a owl:Class ; - rdfs:comment "Abstract referenced KO Pathway"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:MAP00950"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11609"@en . - bo:6335 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yhcOP"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -63454,11 +63454,11 @@ bo:9885 a owl:NamedIndividual , sybio:Protein , bo:462 , bo rdfs:label "signal recognition particle, endoplasmic reticulum targeting"@en , "GO:0005786"@en , "SRP"@en , "signal sequence receptor complex"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005855"^^xsd:string ; + owl:hasValue "GO:0005786"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005786"^^xsd:string ; + owl:hasValue "GO:0005855"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -63757,11 +63757,11 @@ bo:15988 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "ASTD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043824"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0043824"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -64054,7 +64054,7 @@ bo:13531 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0004070"@en , "aspartate carbamoyltransferase"@en , "L-aspartate transcarbamylase"@en , "carbamylaspartotranskinase"@en , "carbamoylaspartotranskinase"@en , "aspartate carbamyltransferase"@en , "aspartic transcarbamylase"@en , "L-aspartate transcarbamoylase"@en , "aspartic carbamyltransferase"@en , "aspartate transcarbamoylase"@en , "carbamoyl-phosphate:L-aspartate carbamoyltransferase"@en , "ATCase"@en , "aspartate transcarbamylase"@en , "aspartic acid transcarbamoylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPCARBTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0004070"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -64062,7 +64062,7 @@ bo:13531 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004070"^^xsd:string ; + owl:hasValue "ASPCARBTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -64394,143 +64394,143 @@ bo:16869 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "ATP biosynthesis"@en , "ATP biosynthetic process"@en , "GO:0006754"@en , "ATP formation"@en , "ATP synthesis"@en , "ATP anabolism"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "493796 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; + owl:hasValue "487572 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "473194 \"ADP and Pi bind to ATPase\""^^xsd:string ; + owl:hasValue "448753 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592554 \"ATP formation\""^^xsd:string ; + owl:hasValue "517512 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542300 \"ATP formation\""^^xsd:string ; + owl:hasValue "598137 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "430384 \"ADP and Pi bind to ATPase\""^^xsd:string ; + owl:hasValue "473194 \"ADP and Pi bind to ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487572 \"ATP formation\""^^xsd:string ; + owl:hasValue "74226 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "74226 \"ATP formation\""^^xsd:string ; + owl:hasValue "493796 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599763 \"ATP formation\""^^xsd:string ; + owl:hasValue "557838 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517512 \"ATP formation\""^^xsd:string ; + owl:hasValue "430384 \"ADP and Pi bind to ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "474935 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; + owl:hasValue "469868 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "454975 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; + owl:hasValue "531199 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "491585 \"ADP and Pi bind to ATPase\""^^xsd:string ; + owl:hasValue "547641 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597332 \"ATP formation\""^^xsd:string ; + owl:hasValue "536574 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "452635 \"ADP and Pi bind to ATPase\""^^xsd:string ; + owl:hasValue "592554 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595374 \"ATP formation\""^^xsd:string ; + owl:hasValue "454975 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552233 \"ATP formation\""^^xsd:string ; + owl:hasValue "526381 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536574 \"ATP formation\""^^xsd:string ; + owl:hasValue "GO:0006754"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "164840 \"ADP and Pi bind to ATPase\""^^xsd:string ; + owl:hasValue "585804 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600598 \"ATP formation\""^^xsd:string ; + owl:hasValue "432411 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006758"^^xsd:string ; + owl:hasValue "597332 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557838 \"ATP formation\""^^xsd:string ; + owl:hasValue "599763 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598137 \"ATP formation\""^^xsd:string ; + owl:hasValue "581642 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581642 \"ATP formation\""^^xsd:string ; + owl:hasValue "568440 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006754"^^xsd:string ; + owl:hasValue "474935 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469868 \"ATP formation\""^^xsd:string ; + owl:hasValue "164832 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448753 \"ATP formation\""^^xsd:string ; + owl:hasValue "602499 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585804 \"ATP formation\""^^xsd:string ; + owl:hasValue "GO:0006758"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "164832 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; + owl:hasValue "600598 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "432411 \"ATP is synthesized from ADP and Pi by ATPase\""^^xsd:string ; + owl:hasValue "595374 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568440 \"ATP formation\""^^xsd:string ; + owl:hasValue "452635 \"ADP and Pi bind to ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526381 \"ATP formation\""^^xsd:string ; + owl:hasValue "164840 \"ADP and Pi bind to ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547641 \"ATP formation\""^^xsd:string ; + owl:hasValue "542300 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531199 \"ATP formation\""^^xsd:string ; + owl:hasValue "491585 \"ADP and Pi bind to ATPase\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507528 \"ATP formation\""^^xsd:string ; + owl:hasValue "552233 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602499 \"ATP formation\""^^xsd:string ; + owl:hasValue "507528 \"ATP formation\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -64713,19 +64713,19 @@ bo:2495 a bo:1875 , sybio:Protein , owl:NamedIndividual ; rdfs:label "GO:0004121"@en , "cystathionine beta-lyase"@en , "L-cystathionine L-homocysteine-lyase"@en , "beta C-S lyase"@en , "cystine lyase"@en , "beta-cystathionase"@en , "cystathionine L-homocysteine-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004121"^^xsd:string ; + owl:hasValue "4.4.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYSTATHIONINE-BETA-LYASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008799"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008799"^^xsd:string ; + owl:hasValue "CYSTATHIONINE-BETA-LYASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.8"^^xsd:string ; + owl:hasValue "GO:0004121"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -64783,11 +64783,11 @@ bo:17698 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MMCD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004492"^^xsd:string ; + owl:hasValue "COG1024"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1024"^^xsd:string ; + owl:hasValue "0004492"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -65094,79 +65094,79 @@ bo:14411 a owl:NamedIndividual , sybio:Compound ; rdfs:label "lipid metabolic process"@en , "GO:0006629"@en , "lipid metabolism"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487307 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "552094 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469588 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "568290 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536437 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "526158 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542134 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "469588 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557672 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "547525 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595297 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "585774 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507258 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "595297 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531055 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "GO:0006629"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602390 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "581492 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552094 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "598099 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568290 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "448458 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597258 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "602390 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Lipid_metabolism"^^xsd:string ; + owl:hasValue "507258 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517280 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "487307 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448458 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "557672 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581492 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "517280 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598099 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "531055 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006629"^^xsd:string ; + owl:hasValue "73923 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592389 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "542134 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -65174,23 +65174,23 @@ bo:14411 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73923 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "536437 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526158 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "599584 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547525 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "Lipid_metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599584 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "597258 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585774 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; + owl:hasValue "592389 \"Metabolism of lipids and lipoproteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -65529,6 +65529,23 @@ bo:23959 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11679 ; tawny:name "23959"@en . +bo:3375 a sybio:SigKPromoter , sybio:Promoter , owl:NamedIndividual ; + rdfs:label "ypqA"@en ; + sybio:NA "TTTATAACAACATCTGGCATAGACGCATAATCTGGTTAAA"^^xsd:string ; + sybio:annotatedSequence "TTTA{TAACA}ACATCTGGCATAGACG{CATAATCT}GGTT/AAA/"@en ; + sybio:begin "2337521"@en ; + sybio:boundBy bo:2608 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "2337560"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:originalAnnotatedSequence + "TTTA{TAACA}ACATCTGGCATAGACG{CATAATCT}GGTT/AAA/AAAGGCGGT"@en ; + sybio:pmid "15383836"^^xsd:string ; + sybio:tfbsEnd "+12"@en ; + sybio:tfbsStart "-37"^^xsd:string ; + sybio:upstreamOf bo:28188 , bo:31685 ; + tawny:name "3375"@en . + bo:9100 a bo:302 , bo:301 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU00980;RNA polymerase sigma-30 factor (sigma(H))"@en , "RNA polymerase sigma-H factor"@en ; rdfs:label "SigH"@en , "Spo0H"@en , "sigH"@en , "BSU00980"@en ; @@ -65549,23 +65566,6 @@ bo:9100 a bo:302 , bo:301 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "9100"@en . -bo:3375 a sybio:SigKPromoter , sybio:Promoter , owl:NamedIndividual ; - rdfs:label "ypqA"@en ; - sybio:NA "TTTATAACAACATCTGGCATAGACGCATAATCTGGTTAAA"^^xsd:string ; - sybio:annotatedSequence "TTTA{TAACA}ACATCTGGCATAGACG{CATAATCT}GGTT/AAA/"@en ; - sybio:begin "2337521"@en ; - sybio:boundBy bo:2608 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "2337560"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:originalAnnotatedSequence - "TTTA{TAACA}ACATCTGGCATAGACG{CATAATCT}GGTT/AAA/AAAGGCGGT"@en ; - sybio:pmid "15383836"^^xsd:string ; - sybio:tfbsEnd "+12"@en ; - sybio:tfbsStart "-37"^^xsd:string ; - sybio:upstreamOf bo:28188 , bo:31685 ; - tawny:name "3375"@en . - bo:3463 a owl:NamedIndividual , sybio:Promoter , sybio:SigXPromoter ; rdfs:label "ywbN"@en ; sybio:NA "AAATACAAAACAAATGATCAGTCCTATACGTCTTATGATAAATTA"^^xsd:string ; @@ -65709,7 +65709,7 @@ bo:18666 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "cd2+-exporting ATPase"@en , "GO:0008551"@en , "cadmium exporting ATPase"@en , "cadmium-translocating P-type ATPase"@en , "Cd2+-exporting ATPase"@en , "cadmium-exporting ATPase"@en , "ATPase"@en , "ATP phosphohydrolase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008551"^^xsd:string ; + owl:hasValue "3.6.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -65717,7 +65717,7 @@ bo:18666 a owl:NamedIndividual , sybio:KOPR ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.3"^^xsd:string ; + owl:hasValue "GO:0008551"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -65748,11 +65748,11 @@ bo:18754 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "FUT9"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0017083"^^xsd:string ; + owl:hasValue "GT10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT10"^^xsd:string ; + owl:hasValue "0017083"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -66061,6 +66061,16 @@ bo:16120 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07253"@en ; tawny:name "16120"@en . +bo:25793 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "glycolipid 1,2-alpha-D-mannosyltransferase"@en , "GDP-mannose"@en , "G10526 + G10614 <=> G00006 + G10620"@en , " <=> "@en ; + sybio:accession "RN:R06128"^^xsd:string ; + sybio:catalyzingClass bo:25794 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25793"@en . + bo:10483 a owl:NamedIndividual , sybio:Protein , bo:1724 ; rdfs:comment "ATP:cob(I)alamin adenosyltransferase;BSU33150"@en , "Cob(I)yrinic acid a,c-diamide adenosyltransferase"@en ; rdfs:label "BSU33150"@en , "YvqK"@en , "yvqK"@en ; @@ -66079,15 +66089,16 @@ bo:10483 a owl:NamedIndividual , sybio:Protein , bo:1724 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10483"@en . -bo:25793 a sybio:Reaction , owl:NamedIndividual ; +bo:25881 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; - rdfs:label "glycolipid 1,2-alpha-D-mannosyltransferase"@en , "GDP-mannose"@en , "G10526 + G10614 <=> G00006 + G10620"@en , " <=> "@en ; - sybio:accession "RN:R06128"^^xsd:string ; - sybio:catalyzingClass bo:25794 ; + rdfs:label "long-chain-alcoholO-3-phospho-2-oxopropanyltransferase"@en , "cpd:C03372 <=> cpd:C03372"@en , "C03372 + C00339 <=> C03715 + C03129"@en , "1-Acyl-glycerone-3-phosphate"@en ; + sybio:accession "RN:R04311"^^xsd:string ; + sybio:catalyzedBy bo:18625 ; + sybio:catalyzingClass bo:25882 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25793"@en . + tawny:name "25881"@en . bo:10571 a owl:NamedIndividual , bo:626 , bo:211 , bo:209 , sybio:Protein , bo:196 ; rdfs:comment "BSU37030;chromosome-anchoring protein RacA"@en , "Chromosome-anchoring protein racA"@en ; @@ -66108,17 +66119,6 @@ bo:10571 a owl:NamedIndividual , bo:626 , bo:211 , bo:209 sybio:taxId "[224308, 1423]"@en ; tawny:name "10571"@en . -bo:25881 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "long-chain-alcoholO-3-phospho-2-oxopropanyltransferase"@en , "cpd:C03372 <=> cpd:C03372"@en , "C03372 + C00339 <=> C03715 + C03129"@en , "1-Acyl-glycerone-3-phosphate"@en ; - sybio:accession "RN:R04311"^^xsd:string ; - sybio:catalyzedBy bo:18625 ; - sybio:catalyzingClass bo:25882 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25881"@en . - bo:6888 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative nucleic acid binding protein;BSU08940"@en ; rdfs:label "YhbD"@en , "YgaS"@en , "BSU08940"@en ; @@ -66424,11 +66424,11 @@ bo:19546 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "flagellin-based flagellum basal body MS ring"@en , "flagellar basal body MS ring"@en , "bacterial-type flagellum basal body, MS ring"@en , "GO:0009431"@en , "flagellar basal body mounting plate"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009430"^^xsd:string ; + owl:hasValue "GO:0009431"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009431"^^xsd:string ; + owl:hasValue "GO:0009430"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -66453,15 +66453,15 @@ bo:19634 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "cytidine 5'-diphospho-1 2-diacyl-sn-glycerol O-phosphatidyltransferase"@en , "CDP-diglycerine-serine O-phosphatidyltransferase"@en , "GO:0003882"@en , "cytidine 5'-diphospho-1 2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase"@en , "CDP-diacylglycerol-L-serine O-phosphatidyltransferase"@en , "CDPdiglyceride-serine O-phosphatidyltransferase"@en , "CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase"@en , "phosphatidylserine synthetase"@en , "PS synthase"@en , "CDP-diacylglycerol-serine O-phosphatidyltransferase"@en , "CDPdiacylglycerol-serine O-phosphatidyltransferase"@en , "CDP-diglyceride-L-serine phosphatidyltransferase"@en , "serine exchange enzyme"@en , "cytidine diphosphoglyceride-serine O-phosphatidyltransferase"@en , "phosphatidylserine synthase"@en , "CDP-diglyceride:serine phosphatidyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003882"^^xsd:string ; + owl:hasValue "PHOSPHASERSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSPHASERSYN-RXN"^^xsd:string ; + owl:hasValue "2.7.8.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.8"^^xsd:string ; + owl:hasValue "GO:0003882"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -66479,24 +66479,6 @@ bo:19722 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19722"@en . -bo:10358 a owl:NamedIndividual , bo:657 , bo:172 , sybio:Protein , bo:1528 , bo:1529 ; - rdfs:comment "Uncharacterized protein yrrC"@en , "putative exonuclease with DNA/RNA helicase motif;BSU27480;"@en ; - rdfs:label "BSU27480"@en , "yrrC"@en , "YrrC"@en ; - sybio:AA "VQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGLQFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQGLEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQTEYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKDEAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEVVEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ"@en ; - sybio:accession "O34481"^^xsd:string , "BSU27480"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30318 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.3 : DNA recombination"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "89148.225"^^xsd:string ; - sybio:pI "5.245354"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10358"@en . - bo:19810 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "trpA"@en ; @@ -66519,6 +66501,24 @@ bo:25668 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25668"@en . +bo:10358 a owl:NamedIndividual , bo:657 , bo:172 , sybio:Protein , bo:1528 , bo:1529 ; + rdfs:comment "Uncharacterized protein yrrC"@en , "putative exonuclease with DNA/RNA helicase motif;BSU27480;"@en ; + rdfs:label "BSU27480"@en , "yrrC"@en , "YrrC"@en ; + sybio:AA "VQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGLQFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQGLEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQTEYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKDEAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEVVEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ"@en ; + sybio:accession "O34481"^^xsd:string , "BSU27480"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30318 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "3.3 : DNA recombination"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "89148.225"^^xsd:string ; + sybio:pI "5.245354"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10358"@en . + bo:5084 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "spoVK_terminator"@en ; sybio:NA "CTGCATAGACCTCTCAGTTTTTGAGAGGTCTGTTTTTTGCTCGTATT"^^xsd:string ; @@ -66866,24 +66866,6 @@ bo:11099 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "11099"@en . -bo:11187 a sybio:Protein , bo:461 , owl:NamedIndividual ; - rdfs:comment "BSU40300;response regulator aspartate phosphatase"@en , "Response regulator aspartate phosphatase G;;YycM protein"@en ; - rdfs:label "BSU40300"@en , "RapG"@en , "YycM"@en , "yycM"@en , "rapG"@en ; - sybio:AA "MNKIAPAEIASMLNDWYLAIKKHEVEESSRLFEEVKPLLDDMEEDQEVLAYFSLLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMYEAYKNNYDIAIGLYKDAEQYLDNIPDPIEKAEFHLKVGKLYYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSELEDHFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYHSAYLLIRELFKIKKKEQALSYYQDVKEKLTAEPNRICEAKIDILYAIYAEGGHAETFHLCKQHMDDLLSEKEYDSVRELSILAGERYRELELYKEAAHFFYEALQIEELIKRTEVI"@en ; - sybio:accession "BSU40300"^^xsd:string , "O32294"^^xsd:string , "Q45609"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:28986 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "42840.96"^^xsd:string ; - sybio:pI "4.986656"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:6954 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11187"@en . - bo:26497 a sybio:Protein , bo:1415 , bo:495 , owl:NamedIndividual ; rdfs:comment "BSU24060;branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)"@en , "derived protein;Dihydrolipoyl dehydrogenase"@en ; rdfs:label "BSU24060"@en , "lpdV"@en , "LpdV"@en , "bfmBC"@en , "YqiV"@en ; @@ -66905,6 +66887,24 @@ bo:26497 a sybio:Protein , bo:1415 , bo:495 , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "26497"@en . +bo:11187 a sybio:Protein , bo:461 , owl:NamedIndividual ; + rdfs:comment "BSU40300;response regulator aspartate phosphatase"@en , "Response regulator aspartate phosphatase G;;YycM protein"@en ; + rdfs:label "BSU40300"@en , "RapG"@en , "YycM"@en , "yycM"@en , "rapG"@en ; + sybio:AA "MNKIAPAEIASMLNDWYLAIKKHEVEESSRLFEEVKPLLDDMEEDQEVLAYFSLLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMYEAYKNNYDIAIGLYKDAEQYLDNIPDPIEKAEFHLKVGKLYYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSELEDHFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYHSAYLLIRELFKIKKKEQALSYYQDVKEKLTAEPNRICEAKIDILYAIYAEGGHAETFHLCKQHMDDLLSEKEYDSVRELSILAGERYRELELYKEAAHFFYEALQIEELIKRTEVI"@en ; + sybio:accession "BSU40300"^^xsd:string , "O32294"^^xsd:string , "Q45609"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:28986 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "42840.96"^^xsd:string ; + sybio:pI "4.986656"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:6954 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11187"@en . + bo:30075 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21490"@en ; rdfs:label "yolF"@en , "sunI"@en , "BSU21490"@en ; @@ -66930,27 +66930,6 @@ bo:30075 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "30075"@en . -bo:11275 a owl:NamedIndividual , bo:323 , sybio:Protein ; - rdfs:comment "BSU01170;ribosomal protein L4;"@en , "50S ribosomal protein L4"@en ; - rdfs:label "BSU01170"@en , "rplD"@en , "RplD"@en ; - sybio:AA "MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA"@en ; - sybio:accession "BSU01170"^^xsd:string , "P42921"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29188 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11267 , bo:11268 , bo:11242 , bo:11274 , bo:11265 , bo:11271 , bo:11266 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "22389.93"^^xsd:string ; - sybio:pI "10.029442"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11284 , bo:11280 , bo:11293 , bo:11276 , bo:11288 , bo:9334 , bo:11285 , bo:11281 , bo:9765 , bo:26902 , bo:11282 , bo:11294 , bo:11306 , bo:11290 , bo:11277 , bo:11289 , bo:11286 , bo:11298 , bo:11283 , bo:9218 , bo:11209 , bo:11291 , bo:11278 , bo:11279 , bo:9360 , bo:11300 , bo:11301 , bo:11299 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11275"@en . - bo:26585 a sybio:Protein , bo:719 , owl:NamedIndividual ; rdfs:comment "L-arabinose transport system permease protein araP;derived protein"@en , "arabinose/arabinan permease;BSU28740"@en ; rdfs:label "AraP"@en , "YseD"@en , "araP"@en , "BSU28740"@en ; @@ -66972,6 +66951,27 @@ bo:26585 a sybio:Protein , bo:719 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26585"@en . +bo:11275 a owl:NamedIndividual , bo:323 , sybio:Protein ; + rdfs:comment "BSU01170;ribosomal protein L4;"@en , "50S ribosomal protein L4"@en ; + rdfs:label "BSU01170"@en , "rplD"@en , "RplD"@en ; + sybio:AA "MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA"@en ; + sybio:accession "BSU01170"^^xsd:string , "P42921"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29188 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11267 , bo:11268 , bo:11242 , bo:11274 , bo:11265 , bo:11271 , bo:11266 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "22389.93"^^xsd:string ; + sybio:pI "10.029442"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11284 , bo:11280 , bo:11293 , bo:11276 , bo:11288 , bo:9334 , bo:11285 , bo:11281 , bo:9765 , bo:26902 , bo:11282 , bo:11294 , bo:11306 , bo:11290 , bo:11277 , bo:11289 , bo:11286 , bo:11298 , bo:11283 , bo:9218 , bo:11209 , bo:11291 , bo:11278 , bo:11279 , bo:9360 , bo:11300 , bo:11301 , bo:11299 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11275"@en . + bo:30163 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24450"@en ; rdfs:label "BSU24450"@en , "yqgF"@en , "efp"@en , "yqhU"@en ; @@ -66997,26 +66997,6 @@ bo:30163 a owl:NamedIndividual , sybio:CDS ; "251.0"@en ; tawny:name "30163"@en . -bo:11363 a owl:NamedIndividual , bo:356 , bo:353 , sybio:Protein ; - rdfs:comment "cystine ABC transporter (ATP-binding protein);BSU03590;"@en , "L-cystine import ATP-binding protein tcyC;YckI"@en ; - rdfs:label "tcyC"@en , "BSU03590"@en , "yckI"@en , "YckI"@en , "TcyC"@en ; - sybio:AA "MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQADILKLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQRFLNRILNPL"@en ; - sybio:accession "BSU03590"^^xsd:string , "P39456"^^xsd:string , "Q9F4F9"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30970 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "27747.22"^^xsd:string ; - sybio:pI "7.052177"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:relatedTo bo:11175 , bo:9691 , bo:11364 , bo:9754 , bo:9692 , bo:11365 , bo:9755 , bo:9575 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11363"@en . - bo:26673 a bo:190 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "D-alanyl-D-alanine carboxypeptidase dacF;derived protein"@en , "BSU23480;D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)"@en ; rdfs:label "BSU23480"@en , "DacF"@en , "dacF"@en ; @@ -67036,23 +67016,25 @@ bo:26673 a bo:190 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26673"@en . -bo:11451 a bo:623 , bo:209 , sybio:Protein , bo:621 , owl:NamedIndividual ; - rdfs:comment "BSU05650;putative membrane component"@en , "Putative membrane protein ydgH"@en ; - rdfs:label "BSU05650"@en , "YdgH"@en , "ydgH"@en ; - sybio:AA "MRAIIKFKWAIAAIVLALTVVLSLFSPNLTELANQKGQAQLPADAVSERANAILKQAGEDNNSISVVFTLDNAIKKETENQLRIIIDKIKKIDGVEEVTSPLSAEKEVKDQLMSKDKKTVLMPVTITGSDKKAEKIADEIYQIVPDDLTAYITGASLINQDFAHSSEEGLKKTEVITVCLIIGLLLIVFRSVVTPFIPIVVVGFSYLISQSILGILVYNVDFPISTFTQTFLVAILFGIGTDYCILLLTRFREELANGHDKKEAALIAYRTGGKTLFISGFAVLIGFSALGFAKFAIFQSAVGVAVGVGILMIILYTLLPLFMVTLGEKLFWPSKKVLSHSDNKLWAFLGRHSVARPFLFIVITVVITLPFILTYDDQISFDSTAEISSDYKSIKALEAIKDGFGEGKAFPINVVVKGDKDLTTADTIPYLGNISKAIEKVDHVDSVMTITQPTGKKIKDLYIDNQLGSVSDGLDKTVKGIADVQSGLTDIENGLNQMAGQTGSASNGGSGGSLGDAADGLGKINQQLQLVSKQISQTGNTAQTVQQLTAISGQLGQIQTGLEQANQQLSGQQAQAGTLTESLKKLSEGVKSANEGLTKVSDGITASSDILEDMSKSPTVRDTGIFIPDQVMKDKDFKKSIDQYSFADGKGVQLSVVLDSNPYSEQAITTINQIKKAVANEVDGTPLENAQIVYGGVTSMNADLKELSTTDFSRTMVIMIIGLFIVLTILFRSMIMPIYMIASLLLTYYTSISITELIFVNGLGNAGVSWAVPFFSFVILIALGVDYSIFLLDRFKEEVHLGIEQGVVRSMSKMGSVIITAAIILAGTFAAMMPSGVNTLMQVASVIIIGLLLYGLVILPLFIPAIIATFGEGNWWPFGRKKGKE"@en ; - sybio:accession "BSU05650"^^xsd:string , "P96706"^^xsd:string ; +bo:11363 a owl:NamedIndividual , bo:356 , bo:353 , sybio:Protein ; + rdfs:comment "cystine ABC transporter (ATP-binding protein);BSU03590;"@en , "L-cystine import ATP-binding protein tcyC;YckI"@en ; + rdfs:label "tcyC"@en , "BSU03590"@en , "yckI"@en , "YckI"@en , "TcyC"@en ; + sybio:AA "MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKKVKQADILKLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQRFLNRILNPL"@en ; + sybio:accession "BSU03590"^^xsd:string , "P39456"^^xsd:string , "Q9F4F9"^^xsd:string ; sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32013 ; + sybio:encodedBy bo:30970 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "95484.96"^^xsd:string ; - sybio:pI "5.316917"^^xsd:string ; - sybio:productType "pm : putative membrane component"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "27747.22"^^xsd:string ; + sybio:pI "7.052177"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:relatedTo bo:11175 , bo:9691 , bo:11364 , bo:9754 , bo:9692 , bo:11365 , bo:9755 , bo:9575 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11451"@en . + tawny:name "11363"@en . bo:30251 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26240"@en ; @@ -67100,6 +67082,24 @@ bo:26761 a bo:1764 , bo:186 , sybio:Protein , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "26761"@en . +bo:11451 a bo:623 , bo:209 , sybio:Protein , bo:621 , owl:NamedIndividual ; + rdfs:comment "BSU05650;putative membrane component"@en , "Putative membrane protein ydgH"@en ; + rdfs:label "BSU05650"@en , "YdgH"@en , "ydgH"@en ; + sybio:AA "MRAIIKFKWAIAAIVLALTVVLSLFSPNLTELANQKGQAQLPADAVSERANAILKQAGEDNNSISVVFTLDNAIKKETENQLRIIIDKIKKIDGVEEVTSPLSAEKEVKDQLMSKDKKTVLMPVTITGSDKKAEKIADEIYQIVPDDLTAYITGASLINQDFAHSSEEGLKKTEVITVCLIIGLLLIVFRSVVTPFIPIVVVGFSYLISQSILGILVYNVDFPISTFTQTFLVAILFGIGTDYCILLLTRFREELANGHDKKEAALIAYRTGGKTLFISGFAVLIGFSALGFAKFAIFQSAVGVAVGVGILMIILYTLLPLFMVTLGEKLFWPSKKVLSHSDNKLWAFLGRHSVARPFLFIVITVVITLPFILTYDDQISFDSTAEISSDYKSIKALEAIKDGFGEGKAFPINVVVKGDKDLTTADTIPYLGNISKAIEKVDHVDSVMTITQPTGKKIKDLYIDNQLGSVSDGLDKTVKGIADVQSGLTDIENGLNQMAGQTGSASNGGSGGSLGDAADGLGKINQQLQLVSKQISQTGNTAQTVQQLTAISGQLGQIQTGLEQANQQLSGQQAQAGTLTESLKKLSEGVKSANEGLTKVSDGITASSDILEDMSKSPTVRDTGIFIPDQVMKDKDFKKSIDQYSFADGKGVQLSVVLDSNPYSEQAITTINQIKKAVANEVDGTPLENAQIVYGGVTSMNADLKELSTTDFSRTMVIMIIGLFIVLTILFRSMIMPIYMIASLLLTYYTSISITELIFVNGLGNAGVSWAVPFFSFVILIALGVDYSIFLLDRFKEEVHLGIEQGVVRSMSKMGSVIITAAIILAGTFAAMMPSGVNTLMQVASVIIIGLLLYGLVILPLFIPAIIATFGEGNWWPFGRKKGKE"@en ; + sybio:accession "BSU05650"^^xsd:string , "P96706"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32013 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "95484.96"^^xsd:string ; + sybio:pI "5.316917"^^xsd:string ; + sybio:productType "pm : putative membrane component"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11451"@en . + a owl:Class ; rdfs:comment "The controlled release of proteins from a cell or group of cells."@en ; @@ -67110,11 +67110,11 @@ bo:26761 a bo:1764 , bo:186 , sybio:Protein , owl:NamedInd owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009306"^^xsd:string ; + owl:hasValue "GO:0045731"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045731"^^xsd:string ; + owl:hasValue "GO:0009306"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -67369,26 +67369,26 @@ bo:32935 a sybio:CDS , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate."@en ; - rdfs:label "glycogen synthase kinase"@en , "hydroxyalkyl-protein kinase"@en , "Hpr kinase"@en , "GO:0004674"@en , "serine-specific protein kinase"@en , "protein serine-threonine kinase"@en , "protein kinase A"@en , "PKC"@en , "protein serine/threonine kinase"@en , "A-kinase"@en , "atypical protein kinase C"@en , "mitogen-activated protein kinase"@en , "AP50 kinase"@en , "Prp4 protein kinase"@en , "Wee-kinase"@en , "epsilon PKC"@en , "STK32"@en , "atypical PKC"@en , "serine protein kinase"@en , "M phase-specific cdc2 kinase"@en , "glycogen synthase A kinase"@en , "HIPK2"@en , "PKA"@en , "threonine-specific protein kinase"@en , "Raf kinase"@en , "ATP-protein transphosphorylase"@en , "ribosomal S6 protein kinase"@en , "protein serine kinase"@en , "serine threonine protein kinase"@en , "ribosomal protein S6 kinase II"@en , "phosphorylase b kinase kinase"@en , "MAPK"@en , "p82 kinase"@en , "ATP:protein phosphotransferase"@en , "serine kinase"@en , "protein-cysteine kinase"@en , "protein phosphokinase"@en , "T-antigen kinase"@en , "casein kinase"@en , "WEE1Hu"@en , "protein kinase"@en , "cytidine 3' 5'-cyclic monophosphate-responsive protein kinase"@en , "betaIIPKC"@en , "protein-serine kinase"@en , "Wee 1-like kinase"@en , "calcium phospholipid-dependent protein kinase"@en , "twitchin kinase"@en , "protein glutamyl kinase"@en , "Raf-1"@en , "non-specific serine threonine protein kinase"@en , "protein kinase p58"@en , "glycogen synthase a kinase"@en , "mitogen-activated S6 kinase"@en , "protein-aspartyl kinase"@en , "dsk1"@en , "phosphorylase B kinase kinase"@en ; + rdfs:label "glycogen synthase kinase"@en , "hydroxyalkyl-protein kinase"@en , "Hpr kinase"@en , "GO:0004674"@en , "serine-specific protein kinase"@en , "protein serine-threonine kinase"@en , "protein kinase A"@en , "PKC"@en , "protein serine/threonine kinase"@en , "A-kinase"@en , "atypical protein kinase C"@en , "mitogen-activated protein kinase"@en , "AP50 kinase"@en , "Prp4 protein kinase"@en , "Wee-kinase"@en , "epsilon PKC"@en , "STK32"@en , "atypical PKC"@en , "serine protein kinase"@en , "M phase-specific cdc2 kinase"@en , "glycogen synthase A kinase"@en , "HIPK2"@en , "PKA"@en , "threonine-specific protein kinase"@en , "Raf kinase"@en , "ATP-protein transphosphorylase"@en , "ribosomal S6 protein kinase"@en , "protein serine kinase"@en , "serine threonine protein kinase"@en , "ribosomal protein S6 kinase II"@en , "phosphorylase b kinase kinase"@en , "MAPK"@en , "p82 kinase"@en , "ATP:protein phosphotransferase"@en , "serine kinase"@en , "protein-cysteine kinase"@en , "protein phosphokinase"@en , "T-antigen kinase"@en , "casein kinase"@en , "WEE1Hu"@en , "protein kinase"@en , "cytidine 3' 5'-cyclic monophosphate-responsive protein kinase"@en , "betaIIPKC"@en , "protein-serine kinase"@en , "Wee 1-like kinase"@en , "calcium phospholipid-dependent protein kinase"@en , "twitchin kinase"@en , "protein glutamyl kinase"@en , "Raf-1"@en , "protein kinase p58"@en , "non-specific serine threonine protein kinase"@en , "glycogen synthase a kinase"@en , "mitogen-activated S6 kinase"@en , "protein-aspartyl kinase"@en , "dsk1"@en , "phosphorylase B kinase kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4028 \"protein serine/threonine kinase activity\""^^xsd:string ; + owl:hasValue "GO:0004700"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004674"^^xsd:string ; + owl:hasValue "PROTEIN-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.11.-"^^xsd:string ; + owl:hasValue "GO:0004674"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROTEIN-KINASE-RXN"^^xsd:string ; + owl:hasValue "4028 \"protein serine/threonine kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004700"^^xsd:string ; + owl:hasValue "2.7.11.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -67925,11 +67925,11 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13392 \"phosphoribosylamine-glycine ligase activity\""^^xsd:string ; + owl:hasValue "6.3.4.13"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.13"^^xsd:string ; + owl:hasValue "13392 \"phosphoribosylamine-glycine ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -67945,7 +67945,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11061 \"protein tyrosine phosphatase activity\""^^xsd:string ; + owl:hasValue "3.1.3.48"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -67953,7 +67953,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.48"^^xsd:string ; + owl:hasValue "11061 \"protein tyrosine phosphatase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -67965,7 +67965,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; rdfs:label "ABC-type efflux porter"@en , "ATP-binding cassette (ABC) transporter complex"@en , "ATP-binding cassette transporter"@en , "ABC-type efflux permease"@en , "ABC-type uptake permease"@en , "mating pheromone exporter"@en , "GO:0043190"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043190"^^xsd:string ; + owl:hasValue "GO:0043191"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -67973,7 +67973,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043191"^^xsd:string ; + owl:hasValue "GO:0043190"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -67989,7 +67989,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15078 \"alanine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "6.1.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -67997,7 +67997,7 @@ bo:12331 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.7"^^xsd:string ; + owl:hasValue "15078 \"alanine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -68385,11 +68385,11 @@ bo:15844 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "IUCD"@en , "E1.14.13.59"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047091"^^xsd:string ; + owl:hasValue "COG3486"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3486"^^xsd:string ; + owl:hasValue "0047091"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -68436,16 +68436,6 @@ bo:28169 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28168 ; tawny:name "28169"@en . -bo:16674 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "phosphogluconate 2-dehydrogenase [EC:1.1.1.43]"@en ; - rdfs:label "E1.1.1.43"@en ; - sybio:accession "0008114"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16673 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00032"@en ; - tawny:name "16674"@en . - bo:28257 a owl:NamedIndividual , sybio:Shim ; rdfs:label "cggR_RBS_upstream"@en ; sybio:NA "AAAA"^^xsd:string ; @@ -68456,6 +68446,16 @@ bo:28257 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28256 ; tawny:name "28257"@en . +bo:16674 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "phosphogluconate 2-dehydrogenase [EC:1.1.1.43]"@en ; + rdfs:label "E1.1.1.43"@en ; + sybio:accession "0008114"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16673 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00032"@en ; + tawny:name "16674"@en . + bo:16762 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "beta-amylase [EC:3.2.1.2]"@en ; rdfs:label "E3.2.1.2"@en ; @@ -68711,15 +68711,15 @@ bo:20251 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "GO:0018106"@en , "peptidyl-histidine phosphorylation"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0036"^^xsd:string ; + owl:hasValue "GO:0018106"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0035"^^xsd:string ; + owl:hasValue "AA0036"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0018106"^^xsd:string ; + owl:hasValue "AA0035"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -68963,100 +68963,100 @@ bo:4984 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ykyB"@en ; tawny:name "4984"@en . -bo:16637 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "trypanothione synthetase/amidase [EC:6.3.1.9 3.5.1.-]"@en ; - rdfs:label "TRYS"@en ; - sybio:accession "0047479"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16638 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01833"@en ; - tawny:name "16637"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving alanine, 2-aminopropanoic acid."@en ; rdfs:label "GO:0006522"@en , "alanine metabolism"@en , "alanine metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448782 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "531224 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469897 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "507559 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006522"^^xsd:string ; + owl:hasValue "568462 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568462 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "70525 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487604 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "542320 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585824 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "GO:0006522"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557864 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "552245 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542320 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "547660 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552245 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "598145 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70525 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "557864 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507559 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "526404 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536594 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "517537 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526404 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "487604 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547660 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "469897 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531224 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "581673 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517537 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "536594 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592582 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "448782 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581673 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "585824 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598145 \"Alanine metabolism\""^^xsd:string ; + owl:hasValue "592582 \"Alanine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16637 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "trypanothione synthetase/amidase [EC:6.3.1.9 3.5.1.-]"@en ; + rdfs:label "TRYS"@en ; + sybio:accession "0047479"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16638 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01833"@en ; + tawny:name "16637"@en . + bo:16725 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "UDP-glucuronate decarboxylase [EC:4.1.1.35]"@en ; rdfs:label "UXS1"@en ; @@ -69836,7 +69836,7 @@ bo:5688 a sybio:Operon , owl:NamedIndividual ; rdfs:label "6-N-acetyl-LL-2 6-diaminoheptanedioate amidohydrolase"@en , "N-acetyldiaminopimelate deacetylase"@en , "N-acetyl-LL-diaminopimelate deacylase"@en , "N6-acetyl-LL-2 6-diaminoheptanedioate amidohydrolase"@en , "N-acetyl-L-diaminopimelic acid deacylase"@en , "GO:0050118"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.47"^^xsd:string ; + owl:hasValue "GO:0050118"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -69844,7 +69844,7 @@ bo:5688 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050118"^^xsd:string ; + owl:hasValue "3.5.1.47"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -70013,13 +70013,29 @@ bo:23727 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11667 , bo:11749 ; tawny:name "23727"@en . +bo:3143 a sybio:SigEPromoter , sybio:Promoter , sybio:InduciblePromoter , owl:NamedIndividual ; + rdfs:label "spoIVCB"@en ; + sybio:NA "CGGTACAGACACAGACAGCCTCCCGGTCACATACATTTACATATAGGC"^^xsd:string ; + sybio:annotatedSequence "CGGTACAG{ACACAGA}CAGCCTCCCGGTCA{CATACATT}TA/CATA/TAGGC"@en ; + sybio:begin "2652915"@en ; + sybio:boundBy bo:2603 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "2652962"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:4074 ; + sybio:pmid "2841290"^^xsd:string ; + sybio:tfbsEnd "+9"@en ; + sybio:tfbsStart "-39"^^xsd:string ; + sybio:upstreamOf bo:30702 ; + tawny:name "3143"@en . + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: D-alanine + 2-oxoglutarate = pyruvate + D-glutamate."@en ; rdfs:label "GO:0047810"@en , "D-amino acid aminotransferase"@en , "D-alanine transaminase"@en , "D-alanine aminotransferase"@en , "D-aspartic aminotransferase"@en , "D-aspartate aminotransferase"@en , "D-aspartate transaminase"@en , "D-amino acid transaminase"@en , "D-amino-acid transaminase"@en , "D-alanine-D-glutamate transaminase"@en , "D-alanine:2-oxoglutarate aminotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047810"^^xsd:string ; + owl:hasValue "2.6.1.21"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -70027,28 +70043,12 @@ bo:23727 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.21"^^xsd:string ; + owl:hasValue "GO:0047810"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:3143 a sybio:SigEPromoter , sybio:Promoter , sybio:InduciblePromoter , owl:NamedIndividual ; - rdfs:label "spoIVCB"@en ; - sybio:NA "CGGTACAGACACAGACAGCCTCCCGGTCACATACATTTACATATAGGC"^^xsd:string ; - sybio:annotatedSequence "CGGTACAG{ACACAGA}CAGCCTCCCGGTCA{CATACATT}TA/CATA/TAGGC"@en ; - sybio:begin "2652915"@en ; - sybio:boundBy bo:2603 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "2652962"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:4074 ; - sybio:pmid "2841290"^^xsd:string ; - sybio:tfbsEnd "+9"@en ; - sybio:tfbsStart "-39"^^xsd:string ; - sybio:upstreamOf bo:30702 ; - tawny:name "3143"@en . - bo:23815 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.7.1.138"@en ; @@ -70435,7 +70435,7 @@ bo:19087 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PMT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9SEH5"^^xsd:string ; + owl:hasValue "Q9SEH4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -70447,11 +70447,11 @@ bo:19087 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9SEH4"^^xsd:string ; + owl:hasValue "Q9SEH7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9SEH7"^^xsd:string ; + owl:hasValue "Q9SEH5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -70524,7 +70524,7 @@ bo:19175 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "GO:0009060"@en , "aerobic respiration"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-3781"^^xsd:string ; + owl:hasValue "GO:0009060"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -70532,7 +70532,7 @@ bo:19175 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009060"^^xsd:string ; + owl:hasValue "PWY-3781"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -70704,6 +70704,17 @@ bo:25297 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25297"@en . +bo:25385 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C05107 <=> cpd:C05107"@en , "C05107 + C00005 + C00080 <=> C01164 + C00006"@en ; + sybio:accession "RN:R07507"^^xsd:string ; + sybio:catalyzedBy bo:19090 ; + sybio:catalyzingClass bo:25386 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25385"@en . + bo:10075 a sybio:Protein , owl:NamedIndividual , bo:613 ; rdfs:comment "BSU05280;putative integral inner membrane protein"@en , "UPF0750 membrane protein ydeO"@en ; rdfs:label "YdeO"@en , "BSU05280"@en , "ydeO"@en ; @@ -70721,16 +70732,15 @@ bo:10075 a sybio:Protein , owl:NamedIndividual , bo:613 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10075"@en . -bo:25385 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C05107 <=> cpd:C05107"@en , "C05107 + C00005 + C00080 <=> C01164 + C00006"@en ; - sybio:accession "RN:R07507"^^xsd:string ; - sybio:catalyzedBy bo:19090 ; - sybio:catalyzingClass bo:25386 ; +bo:25473 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "tetrachloroethene reductive dehalogenase - reversible"@en ; + rdfs:label "cpd:C06789 <=> cpd:C06789"@en , "C06789 + 2 C00080 <=> C06790 + C01327"@en ; + sybio:accession "RN:R05499"^^xsd:string ; + sybio:catalyzingClass bo:25318 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25385"@en . + tawny:name "25473"@en . bo:10163 a sybio:Protein , bo:1251 , owl:NamedIndividual ; rdfs:comment "Aldose 1-epimerase;GalM"@en , "putative epimerase;BSU18360"@en ; @@ -70750,15 +70760,16 @@ bo:10163 a sybio:Protein , bo:1251 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10163"@en . -bo:25473 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "tetrachloroethene reductive dehalogenase - reversible"@en ; - rdfs:label "cpd:C06789 <=> cpd:C06789"@en , "C06789 + 2 C00080 <=> C06790 + C01327"@en ; - sybio:accession "RN:R05499"^^xsd:string ; - sybio:catalyzingClass bo:25318 ; +bo:25561 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "flavonol synthase - reversible"@en ; + rdfs:label "cpd:C01617 <=> cpd:C01617"@en , "dihydroflavonol,2-oxoglutarate"@en , "C01617 + C00026 + C00007 <=> C00389 + C00042 + C00011 + C00001"@en , "oxygen oxidoreductase"@en ; + sybio:accession "RN:R02160"^^xsd:string ; + sybio:catalyzedBy bo:19222 ; + sybio:catalyzingClass bo:25562 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25473"@en . + tawny:name "25561"@en . bo:10251 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU21720"@en , "Uncharacterized protein ypmT"@en ; @@ -70777,17 +70788,6 @@ bo:10251 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10251"@en . -bo:25561 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "flavonol synthase - reversible"@en ; - rdfs:label "cpd:C01617 <=> cpd:C01617"@en , "dihydroflavonol,2-oxoglutarate"@en , "C01617 + C00026 + C00007 <=> C00389 + C00042 + C00011 + C00001"@en , "oxygen oxidoreductase"@en ; - sybio:accession "RN:R02160"^^xsd:string ; - sybio:catalyzedBy bo:19222 ; - sybio:catalyzingClass bo:25562 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25561"@en . - bo:6568 a owl:NamedIndividual , sybio:TF ; rdfs:comment "transcriptional regulator"@en , "a bi-functional factor which acts both positively and negatively in controlling sigma G-dependent gene expression. Homologous to AbrB"@en ; rdfs:label "YabL"@en , "SpoVT"@en , "BSU00560"@en ; @@ -70965,25 +70965,6 @@ bo:4111 a sybio:Operator , sybio:NegativelyRegulatedOperator sybio:sigmaFactor "SigA"^^xsd:string ; tawny:name "4111"@en . -bo:11080 a sybio:Protein , owl:NamedIndividual , bo:361 , bo:1794 ; - rdfs:comment "N-acetylmuramoyl-L-alanine amidase (major autolysin);BSU35620;"@en , "N-acetylmuramoyl-L-alanine amidase cwlB"@en ; - rdfs:label "lytC"@en , "CwlB"@en , "BSU35620"@en , "LytC"@en ; - sybio:AA "LRSYIKVLTMCFLGLILFVPTALADNSVKRVGGSNRYGTAVQISKQMYSTASTAVIVGGSSYADAISAAPLAYQKNAPLLYTNSDKLSYETKTRLKEMQTKNVIIVGGTPAVSSNTANQIKSLGISIKRIAGSNRYDTAARVAKAMGATSKAVILNGFLYADAPAVIPYAAKNGYPILFTNKTSINSATTSVIKDKGISSTVVVGGTGSISNTVYNKLPSPTRISGSNRYELAANIVQKLNLSTSTVYVSNGFSYPDSIAGATLAAKKKQSLILTNGENLSTGARKIIGSKNMSNFMIIGNTPAVSTKVANQLKNPVVGETIFIDPGHGDQDSGAIGNGLLEKEVNLDIAKRVNTKLNASGALPVLSRSNDTFYSLQERVNKAASAQADLFLSIHANANDSSSPNGSETYYDTTYQAANSKRLAEQIQPKLAANLGTRDRGVKTAAFYVIKYSKMPSVLVETAFITNASDASKLKQAVYKDKAAQAIHDGTVSYYR"@en ; - sybio:accession "BSU35620"^^xsd:string , "Q02114"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29059 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:interactsWith bo:9542 , bo:9659 , bo:11310 , bo:9581 , bo:9497 , bo:9653 , bo:9695 , bo:9223 , bo:9224 , bo:11341 , bo:9222 , bo:9407 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , ; - sybio:molecularWeight "52605.575"^^xsd:string ; - sybio:pI "9.772133"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11080"@en . - bo:26390 a sybio:Protein , owl:NamedIndividual , bo:1227 ; rdfs:comment "Thymidylate synthase 1;derived protein"@en , "BSU17680;thymidylate synthase A"@en ; rdfs:label "thyA1"@en , "thyA"@en , "ThyA"@en , "BSU17680"@en ; @@ -71004,6 +70985,25 @@ bo:26390 a sybio:Protein , owl:NamedIndividual , bo:1227 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26390"@en . +bo:11080 a sybio:Protein , owl:NamedIndividual , bo:361 , bo:1794 ; + rdfs:comment "N-acetylmuramoyl-L-alanine amidase (major autolysin);BSU35620;"@en , "N-acetylmuramoyl-L-alanine amidase cwlB"@en ; + rdfs:label "lytC"@en , "CwlB"@en , "BSU35620"@en , "LytC"@en ; + sybio:AA "LRSYIKVLTMCFLGLILFVPTALADNSVKRVGGSNRYGTAVQISKQMYSTASTAVIVGGSSYADAISAAPLAYQKNAPLLYTNSDKLSYETKTRLKEMQTKNVIIVGGTPAVSSNTANQIKSLGISIKRIAGSNRYDTAARVAKAMGATSKAVILNGFLYADAPAVIPYAAKNGYPILFTNKTSINSATTSVIKDKGISSTVVVGGTGSISNTVYNKLPSPTRISGSNRYELAANIVQKLNLSTSTVYVSNGFSYPDSIAGATLAAKKKQSLILTNGENLSTGARKIIGSKNMSNFMIIGNTPAVSTKVANQLKNPVVGETIFIDPGHGDQDSGAIGNGLLEKEVNLDIAKRVNTKLNASGALPVLSRSNDTFYSLQERVNKAASAQADLFLSIHANANDSSSPNGSETYYDTTYQAANSKRLAEQIQPKLAANLGTRDRGVKTAAFYVIKYSKMPSVLVETAFITNASDASKLKQAVYKDKAAQAIHDGTVSYYR"@en ; + sybio:accession "BSU35620"^^xsd:string , "Q02114"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29059 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:interactsWith bo:9542 , bo:9659 , bo:11310 , bo:9581 , bo:9497 , bo:9653 , bo:9695 , bo:9223 , bo:9224 , bo:11341 , bo:9222 , bo:9407 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , ; + sybio:molecularWeight "52605.575"^^xsd:string ; + sybio:pI "9.772133"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11080"@en . + bo:7397 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Malonyl-CoA transacylase;BamD"@en ; rdfs:label "bamD"@en ; @@ -71861,11 +71861,11 @@ bo:14681 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "terpenoid biosynthetic process"@en , "GO:0016114"@en , "terpenoid formation"@en , "terpenoid synthesis"@en , "terpenoid anabolism"@en , "terpenoid biosynthesis"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016114"^^xsd:string ; + owl:hasValue "Terpenoid"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Terpenoid"^^xsd:string ; + owl:hasValue "GO:0016114"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -71920,6 +71920,16 @@ bo:32439 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu07560"@en ; tawny:name "32439"@en . +bo:13639 a owl:NamedIndividual , sybio:Compound ; + rdfs:label "Thiamine biosynthesis intermediate 5"@en , "C15814"@en ; + sybio:accession "C15814"^^xsd:string , "47205139"^^xsd:string ; + sybio:consumedBy bo:24500 , bo:24501 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24500 , bo:24501 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15814"@en ; + tawny:name "13639"@en . + bo:28949 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "putative esterase (EC:3.1.-.-);"@en , "BSU30810"@en ; rdfs:label "BSU30810"@en , "ytxM"@en , "ytfB"@en ; @@ -71947,16 +71957,6 @@ bo:28949 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu30810"@en ; tawny:name "28949"@en . -bo:13639 a owl:NamedIndividual , sybio:Compound ; - rdfs:label "Thiamine biosynthesis intermediate 5"@en , "C15814"@en ; - sybio:accession "C15814"^^xsd:string , "47205139"^^xsd:string ; - sybio:consumedBy bo:24500 , bo:24501 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24500 , bo:24501 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15814"@en ; - tawny:name "13639"@en . - bo:32527 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32600;"@en , "putative fructose amino acid-binding lipoprotein"@en ; rdfs:label "BSU32600"@en , "yurO"@en , "frlO"@en ; @@ -72557,11 +72557,11 @@ bo:15385 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "SPOT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008893"^^xsd:string ; + owl:hasValue "COG0317"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0317"^^xsd:string ; + owl:hasValue "0008893"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -72912,15 +72912,15 @@ bo:21647 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "enzyme X"@en , "GO:0008696"@en , "4-amino-4-deoxychorismate lyase"@en , "para-aminobenzoic acid synthase"@en , "aminodeoxychorismate lyase"@en , "4-amino-4-deoxychorismate pyruvate-lyase"@en , "p-aminobenzoate synthetase"@en , "ADC lyase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008696"^^xsd:string ; + owl:hasValue "4.1.3.38"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.38"^^xsd:string ; + owl:hasValue "ADCLY-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADCLY-RXN"^^xsd:string ; + owl:hasValue "GO:0008696"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -73168,6 +73168,16 @@ bo:28025 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30845 ; tawny:name "28025"@en . +bo:28113 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "yhdF_RBS"@en ; + sybio:NA "CATGTCTAGGAGTGATGAAT"^^xsd:string ; + sybio:begin "1022211"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1022230"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31291 ; + tawny:name "28113"@en . + bo:16530 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "2-phosphinomethylmalic acid synthase"@en ; rdfs:label "PMS"@en ; @@ -73187,16 +73197,6 @@ bo:22388 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11607 ; tawny:name "22388"@en . -bo:28113 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "yhdF_RBS"@en ; - sybio:NA "CATGTCTAGGAGTGATGAAT"^^xsd:string ; - sybio:begin "1022211"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1022230"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31291 ; - tawny:name "28113"@en . - bo:22476 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "C00596 + C00042 <=> C04479 + C00001"@en , "2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate succinylhydrolase"@en , "cpd:C04479 => cpd:C04479"@en ; @@ -73393,27 +73393,27 @@ bo:17183 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019"@en ; tawny:name "17183"@en . -bo:294 a owl:Class ; - rdfs:label "COG0245"@en ; - rdfs:subClassOf bo:233 , sybio:COG ; +bo:1026 a owl:Class ; + rdfs:label "COG0303"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0245"^^xsd:string ; + owl:hasValue "COG0303"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "294"@en . + tawny:name "1026"@en . -bo:1026 a owl:Class ; - rdfs:label "COG0303"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:294 a owl:Class ; + rdfs:label "COG0245"@en ; + rdfs:subClassOf bo:233 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0303"^^xsd:string ; + owl:hasValue "COG0245"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1026"@en . + tawny:name "294"@en . bo:10892 a sybio:Protein , owl:NamedIndividual , bo:398 ; rdfs:comment "BSU03880;putative transcriptional regulator (ArsR family);"@en , "Uncharacterized HTH-type transcriptional regulator yczG"@en ; @@ -73445,27 +73445,27 @@ bo:17271 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04628"@en ; tawny:name "17271"@en . -bo:382 a owl:Class ; - rdfs:label "COG1737"@en ; - rdfs:subClassOf bo:223 , sybio:COG ; +bo:1114 a owl:Class ; + rdfs:label "COG1162"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1737"^^xsd:string ; + owl:hasValue "COG1162"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "382"@en . + tawny:name "1114"@en . -bo:1114 a owl:Class ; - rdfs:label "COG1162"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:382 a owl:Class ; + rdfs:label "COG1737"@en ; + rdfs:subClassOf bo:223 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1162"^^xsd:string ; + owl:hasValue "COG1737"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1114"@en . + tawny:name "382"@en . bo:10980 a owl:NamedIndividual , bo:1721 , sybio:Protein ; rdfs:comment "Protein liaF"@en , "BSU33100;integral inner membrane protein"@en ; @@ -73484,17 +73484,6 @@ bo:10980 a owl:NamedIndividual , bo:1721 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10980"@en . -bo:470 a owl:Class ; - rdfs:label "COG0581"@en ; - rdfs:subClassOf bo:354 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0581"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "470"@en . - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine + H2O = 5-amino-6-(5-phosphoribosylamino)uracil + NH3."@en ; @@ -73505,15 +73494,15 @@ bo:470 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008485"^^xsd:string ; + owl:hasValue "RIBOFLAVINSYNDEAM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.26"^^xsd:string ; + owl:hasValue "GO:0008485"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBOFLAVINSYNDEAM-RXN"^^xsd:string ; + owl:hasValue "3.5.4.26"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -73530,6 +73519,17 @@ bo:1202 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1202"@en . +bo:470 a owl:Class ; + rdfs:label "COG0581"@en ; + rdfs:subClassOf bo:354 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0581"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "470"@en . + bo:29030 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)"@en , "BSU28120"@en ; rdfs:label "BSU28120"@en , "hemK"@en , "hemL"@en ; @@ -73610,16 +73610,6 @@ bo:4576 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4575 ; tawny:name "4576"@en . -bo:16317 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]"@en ; - rdfs:label "E1.13.11.6"@en , "HAAO"@en ; - sybio:accession "0000334"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16316 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00452"@en ; - tawny:name "16317"@en . - bo:4664 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yflL_terminator"@en ; sybio:NA "TCAGCGGCGATGCCGATCACGGACGCTACTTTTTTGAGCTTGTC"^^xsd:string ; @@ -73632,6 +73622,16 @@ bo:4664 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4663 ; tawny:name "4664"@en . +bo:16317 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]"@en ; + rdfs:label "E1.13.11.6"@en , "HAAO"@en ; + sybio:accession "0000334"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16316 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00452"@en ; + tawny:name "16317"@en . + bo:16405 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "dehydroquinate synthase II [EC:1.4.1.-]"@en ; rdfs:label "K11646"@en ; @@ -73682,11 +73682,11 @@ bo:22439 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5-METHYLTHIORIBOSE-KINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0046522"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046522"^^xsd:string ; + owl:hasValue "5-METHYLTHIORIBOSE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -73850,11 +73850,11 @@ bo:17146 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "AAS"@en , "E2.3.1.40"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0204"^^xsd:string ; + owl:hasValue "0008779"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008779"^^xsd:string ; + owl:hasValue "COG0204"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -74088,11 +74088,11 @@ bo:4715 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "glucosidase"@en , "GO:0015926"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.-"^^xsd:string ; + owl:hasValue "GO:0015926"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015926"^^xsd:string ; + owl:hasValue "3.2.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -74167,17 +74167,6 @@ bo:30484 a sybio:CDS , owl:NamedIndividual ; "118.0"@en ; tawny:name "30484"@en . -bo:11684 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00628"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00628"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11684"@en . - bo:26994 a bo:688 , owl:NamedIndividual , bo:414 , sybio:Protein ; rdfs:comment "Bifunctional purine biosynthesis protein purH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;derived protein"@en , "fused phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase;BSU06520"@en ; rdfs:label "PurH"@en , "BSU06520"@en , "purH"@en , "PurJ"@en ; @@ -74197,6 +74186,17 @@ bo:26994 a bo:688 , owl:NamedIndividual , bo:414 , sybio:P sybio:taxId "224308"@en ; tawny:name "26994"@en . +bo:11684 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00628"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00628"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11684"@en . + bo:18063 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "cytochrome c heme-lyase [EC:4.4.1.17]"@en ; rdfs:label "E4.4.1.17"@en ; @@ -74249,11 +74249,11 @@ bo:18151 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "CBIT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2242"^^xsd:string ; + owl:hasValue "0016491"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016491"^^xsd:string ; + owl:hasValue "COG2242"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -74527,6 +74527,22 @@ bo:30359 a sybio:CDS , owl:NamedIndividual ; "30.0"@en ; tawny:name "30359"@en . +bo:11559 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00053.png"@en ; + rdfs:label "Ascorbate and aldarate metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00053"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11553 , bo:11652 , bo:11549 ; + sybio:derivesFrom bo:11560 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00053"@en ; + tawny:name "11559"@en . + bo:26869 a sybio:Protein , owl:NamedIndividual , bo:403 , bo:209 ; rdfs:comment "two-component sensor histidine kinase [YycF];BSU40400"@en , "Sensor histidine kinase yycG;derived protein"@en ; rdfs:label "yycG"@en , "YycG"@en , "WalK"@en , "walK"@en , "BSU40400"@en ; @@ -74547,22 +74563,6 @@ bo:26869 a sybio:Protein , owl:NamedIndividual , bo:403 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26869"@en . -bo:11559 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00053.png"@en ; - rdfs:label "Ascorbate and aldarate metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00053"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11553 , bo:11652 , bo:11549 ; - sybio:derivesFrom bo:11560 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00053"@en ; - tawny:name "11559"@en . - a owl:Class ; rdfs:comment "The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified.;"@en ; @@ -74760,11 +74760,11 @@ bo:18202 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "HEMF"@en , "E1.3.3.3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0408"^^xsd:string ; + owl:hasValue "0004109"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004109"^^xsd:string ; + owl:hasValue "COG0408"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -75972,6 +75972,17 @@ bo:32420 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "32420"@en . +bo:13620 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "CH2O"@en ; + rdfs:label "Formaldehyde"@en , "Methanal"@en , "Oxomethylene"@en , "Oxomethane"@en , "CH2O"@en , "Formalin"@en , "Methylene oxide"@en ; + sybio:accession "C00067"^^xsd:string , "B00018"^^xsd:string , "50-00-0"^^xsd:string , "3367"^^xsd:string , "16842"^^xsd:string ; + sybio:consumedBy bo:24452 , bo:24466 , bo:24450 , bo:24435 , bo:20571 , bo:24457 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24439 , bo:24458 , bo:24464 , bo:24462 , bo:24460 , bo:24437 , bo:24480 , bo:24471 , bo:24444 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00067"@en ; + tawny:name "13620"@en . + bo:28930 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24150"@en , "short chain acyl-CoA dehydrogenase (EC:1.3.99.-)"@en ; rdfs:label "yqiN"@en , "mmgC"@en , "BSU24150"@en ; @@ -75999,17 +76010,6 @@ bo:28930 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu24150"@en ; tawny:name "28930"@en . -bo:13620 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "CH2O"@en ; - rdfs:label "Formaldehyde"@en , "Methanal"@en , "Oxomethylene"@en , "Oxomethane"@en , "CH2O"@en , "Formalin"@en , "Methylene oxide"@en ; - sybio:accession "C00067"^^xsd:string , "B00018"^^xsd:string , "50-00-0"^^xsd:string , "3367"^^xsd:string , "16842"^^xsd:string ; - sybio:consumedBy bo:24452 , bo:24466 , bo:24450 , bo:24435 , bo:20571 , bo:24457 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24439 , bo:24458 , bo:24464 , bo:24462 , bo:24460 , bo:24437 , bo:24480 , bo:24471 , bo:24444 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00067"@en ; - tawny:name "13620"@en . - bo:9937 a sybio:Protein , bo:462 , owl:NamedIndividual ; rdfs:comment "BSU13770;putative oxidoreductase"@en , "Uncharacterized oxidoreductase ykvO"@en ; rdfs:label "YkvO"@en , "BSU13770"@en , "ykvO"@en ; @@ -76438,15 +76438,15 @@ bo:28805 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0004034"@en , "aldose 1-epimerase"@en , "aldose mutarotase"@en , "mutarotase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004034"^^xsd:string ; + owl:hasValue "5.1.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.3"^^xsd:string ; + owl:hasValue "ALDOSE-1-EPIMERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALDOSE-1-EPIMERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004034"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -76611,11 +76611,11 @@ bo:17875 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PDXK"@en , "PDXY"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2240"^^xsd:string ; + owl:hasValue "0008478"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008478"^^xsd:string ; + owl:hasValue "COG2240"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -77114,7 +77114,7 @@ bo:17926 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "HLCS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004079"^^xsd:string ; + owl:hasValue "0004078"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -77122,11 +77122,11 @@ bo:17926 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004078"^^xsd:string ; + owl:hasValue "0004077"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004077"^^xsd:string ; + owl:hasValue "0004079"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -77178,6 +77178,15 @@ bo:3288 a owl:NamedIndividual , sybio:Promoter , sybio:Si sybio:upstreamOf bo:28764 , bo:27814 ; tawny:name "3288"@en . +bo:3376 a sybio:SigKPromoter , owl:NamedIndividual , sybio:Promoter ; + rdfs:label "yqfQ"@en ; + sybio:boundBy bo:2608 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "12480901"^^xsd:string ; + sybio:upstreamOf bo:31791 ; + tawny:name "3376"@en . + bo:9101 a bo:211 , sybio:Protein , owl:NamedIndividual , bo:1030 ; rdfs:comment "Putative efflux system component yknX"@en , "BSU14350;putative efflux permease"@en ; rdfs:label "BSU14350"@en , "YknX"@en , "yknX"@en ; @@ -77198,15 +77207,6 @@ bo:9101 a bo:211 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "9101"@en . -bo:3376 a sybio:SigKPromoter , owl:NamedIndividual , sybio:Promoter ; - rdfs:label "yqfQ"@en ; - sybio:boundBy bo:2608 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "12480901"^^xsd:string ; - sybio:upstreamOf bo:31791 ; - tawny:name "3376"@en . - bo:3464 a owl:NamedIndividual , sybio:SigXPromoter , sybio:Promoter ; rdfs:label "ywnJ"@en ; sybio:NA "TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG"^^xsd:string ; @@ -77385,11 +77385,11 @@ bo:18931 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GALNT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004653"^^xsd:string ; + owl:hasValue "GT27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT27"^^xsd:string ; + owl:hasValue "0004653"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -77648,11 +77648,11 @@ bo:16033 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "DDC"@en , "E4.1.1.28"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0076"^^xsd:string ; + owl:hasValue "0004058"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004058"^^xsd:string ; + owl:hasValue "COG0076"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -77687,6 +77687,18 @@ bo:16121 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12732"@en ; tawny:name "16121"@en . +bo:25794 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.131"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.131"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25794"@en . + bo:10484 a bo:1725 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yvrE"@en , "conserved hypothetical protein;BSU33200"@en ; rdfs:label "yvrE"@en , "BSU33200"@en , "YvrE"@en ; @@ -77704,17 +77716,17 @@ bo:10484 a bo:1725 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10484"@en . -bo:25794 a owl:NamedIndividual , sybio:EC , owl:Class ; +bo:25882 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.131"@en ; + rdfs:label "2.5.1.26"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.131"^^xsd:string ; + owl:hasValue "2.5.1.26"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25794"@en . + tawny:name "25882"@en . bo:10572 a bo:379 , bo:1838 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized transporter ywkB"@en , "BSU37040;putative transporter"@en ; @@ -77734,18 +77746,6 @@ bo:10572 a bo:379 , bo:1838 , sybio:Protein , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "10572"@en . -bo:25882 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.5.1.26"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.26"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25882"@en . - bo:6889 a sybio:Protein , bo:803 , owl:NamedIndividual ; rdfs:comment "BSU08950;conserved hypothetical protein"@en ; rdfs:label "YhbE"@en , "BSU08950"@en , "YzdA"@en , "YgaT"@en ; @@ -77763,6 +77763,18 @@ bo:6889 a sybio:Protein , bo:803 , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "6889"@en . +bo:25970 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.13.74"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.13.74"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25970"@en . + bo:10660 a bo:387 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Positive control factor;"@en , "putative RNA polymerase PBSX sigma factor-like;BSU12560"@en ; rdfs:label "BSU12560"@en , "YkxE"@en , "Pcf"@en , "Xpf"@en , "xpf"@en ; @@ -77782,17 +77794,17 @@ bo:10660 a bo:387 , sybio:Protein , owl:NamedIndividual ; tawny:name "10660"@en ; owl:sameAs bo:2632 . -bo:25970 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.13.74"@en ; - rdfs:subClassOf sybio:EC ; + + a owl:Class ; + rdfs:comment "The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits."@en ; + rdfs:label "protein homotrimer assembly"@en , "GO:0070207"@en , "protein homotrimer formation"@en , "protein homotrimerization"@en , "protein homotrimer biosynthesis"@en , "protein homotrimer biosynthetic process"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.13.74"^^xsd:string ; + owl:hasValue "GO:0070207"^^xsd:string ; owl:onProperty sybio:accession ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25970"@en . + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . bo:6977 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative phage-related pre-neck appendage protein;BSU19030"@en ; @@ -77811,18 +77823,6 @@ bo:6977 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "6977"@en . - - a owl:Class ; - rdfs:comment "The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits."@en ; - rdfs:label "protein homotrimer assembly"@en , "GO:0070207"@en , "protein homotrimer formation"@en , "protein homotrimerization"@en , "protein homotrimer biosynthesis"@en , "protein homotrimer biosynthetic process"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0070207"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:150 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "transfer RNA-Ala"@en ; rdfs:label "TrnSL-Ala1"@en , "BSU_tRNA_86"@en ; @@ -78059,15 +78059,15 @@ bo:19635 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "cytidine triphosphate synthetase"@en , "GO:0003883"@en , "CTP synthase"@en , "uridine triphosphate aminase"@en , "UTP:ammonia ligase"@en , "CTP synthetase"@en , "UTP--ammonia ligase"@en , "cytidine 5'-triphosphate synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.2"^^xsd:string ; + owl:hasValue "CTPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CTPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0003883"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003883"^^xsd:string ; + owl:hasValue "6.3.4.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -78455,24 +78455,6 @@ bo:32973 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu35020"@en ; tawny:name "32973"@en . -bo:11188 a owl:NamedIndividual , sybio:Protein , bo:1910 ; - rdfs:comment "Two-component system yycFG regulatory protein"@en , "regulator of YycFG;BSU40380"@en ; - rdfs:label "BSU40380"@en , "YycI"@en , "yycI"@en ; - sybio:AA "VEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQVLAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ"@en ; - sybio:accession "Q45612"^^xsd:string , "BSU40380"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31935 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "32560.745"^^xsd:string ; - sybio:pI "5.429283"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:relatedTo bo:26214 , bo:26869 , bo:11189 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11188"@en . - bo:26498 a bo:1416 , sybio:Protein , owl:NamedIndividual , bo:1417 ; rdfs:comment "derived protein;Probable butyrate kinase"@en , "branched-chain fatty-acid kinase;BSU24070"@en ; rdfs:label "YqiU"@en , "buk"@en , "BSU24070"@en , "Buk"@en ; @@ -78493,6 +78475,24 @@ bo:26498 a bo:1416 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26498"@en . +bo:11188 a owl:NamedIndividual , sybio:Protein , bo:1910 ; + rdfs:comment "Two-component system yycFG regulatory protein"@en , "regulator of YycFG;BSU40380"@en ; + rdfs:label "BSU40380"@en , "YycI"@en , "yycI"@en ; + sybio:AA "VEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQVLAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ"@en ; + sybio:accession "Q45612"^^xsd:string , "BSU40380"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31935 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "32560.745"^^xsd:string ; + sybio:pI "5.429283"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:relatedTo bo:26214 , bo:26869 , bo:11189 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11188"@en . + bo:30076 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21530"@en ; rdfs:label "BSU21530"@en , "yolB"@en ; @@ -78518,6 +78518,26 @@ bo:30076 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "30076"@en . +bo:26586 a sybio:Protein , bo:718 , owl:NamedIndividual ; + rdfs:comment "BSU28750;sugar-binding lipoprotein"@en , "Probable arabinose-binding protein;;derived protein"@en ; + rdfs:label "araN"@en , "AraN"@en , "BSU28750"@en , "YseC"@en ; + sybio:AA "MKKMTVCFLVLMMLLTLVIAGCSAEKSSGKSGETELTFWTFNGLHEQFYVEMVKEWNKKYPDRKIKLNTVVYPYGQMHDNLSISLIAGEGVPDIADVELARFSNFLKGSDIPLADLTPLIEKDRDKFVEARLTLYSKNGKLYGLDTHVGTTVMFYNMDVMKKAGVNPDDIKTWDDYHKAGQKVRKVTGKPMGTVETNDSATFLSMISQQNSGYFDKNGKLILNNDTNVKTLQYLKDMINDKTMIPAPGGGHHSEEYYGFMNQGGAASVLMPIWYMGRFIDYMPDLKGKIAIRPLPAWKEGGDRSAGLGGTATVVPKQSKHVELAKEFLAFAKGSEEGNKKLWSVLGFDPLRWDVWSSKELKEKNKYTDYFQNGTGIFSVLLDIKDEINPIYLHEDFAKASDLVNRSVLFDALKSQQKTPKQALDRAAGELKQK"@en ; + sybio:accession "P94528"^^xsd:string , "255767663"^^xsd:string , "937433"^^xsd:string , "BSU28750"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28841 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "48671.88"^^xsd:string ; + sybio:pI "8.442223"^^xsd:string ; + sybio:partOf bo:20356 ; + sybio:productType "lp : lipoprotein"^^xsd:string ; + sybio:relatedTo bo:9738 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26586"@en . + bo:11276 a bo:324 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "50S ribosomal protein L23"@en , "BSU01180;ribosomal protein L23"@en ; rdfs:label "rplW"@en , "RplW"@en , "BSU01180"@en ; @@ -78539,26 +78559,6 @@ bo:11276 a bo:324 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11276"@en . -bo:26586 a sybio:Protein , bo:718 , owl:NamedIndividual ; - rdfs:comment "BSU28750;sugar-binding lipoprotein"@en , "Probable arabinose-binding protein;;derived protein"@en ; - rdfs:label "araN"@en , "AraN"@en , "BSU28750"@en , "YseC"@en ; - sybio:AA "MKKMTVCFLVLMMLLTLVIAGCSAEKSSGKSGETELTFWTFNGLHEQFYVEMVKEWNKKYPDRKIKLNTVVYPYGQMHDNLSISLIAGEGVPDIADVELARFSNFLKGSDIPLADLTPLIEKDRDKFVEARLTLYSKNGKLYGLDTHVGTTVMFYNMDVMKKAGVNPDDIKTWDDYHKAGQKVRKVTGKPMGTVETNDSATFLSMISQQNSGYFDKNGKLILNNDTNVKTLQYLKDMINDKTMIPAPGGGHHSEEYYGFMNQGGAASVLMPIWYMGRFIDYMPDLKGKIAIRPLPAWKEGGDRSAGLGGTATVVPKQSKHVELAKEFLAFAKGSEEGNKKLWSVLGFDPLRWDVWSSKELKEKNKYTDYFQNGTGIFSVLLDIKDEINPIYLHEDFAKASDLVNRSVLFDALKSQQKTPKQALDRAAGELKQK"@en ; - sybio:accession "P94528"^^xsd:string , "255767663"^^xsd:string , "937433"^^xsd:string , "BSU28750"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28841 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "48671.88"^^xsd:string ; - sybio:pI "8.442223"^^xsd:string ; - sybio:partOf bo:20356 ; - sybio:productType "lp : lipoprotein"^^xsd:string ; - sybio:relatedTo bo:9738 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26586"@en . - bo:30164 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU24460;"@en ; rdfs:label "yqhT"@en , "BSU24460"@en ; @@ -78584,6 +78584,24 @@ bo:30164 a sybio:CDS , owl:NamedIndividual ; "2799.0"@en ; tawny:name "30164"@en . +bo:26674 a bo:385 , sybio:Protein , bo:410 , owl:NamedIndividual ; + rdfs:comment "BSU26600;spermine/spermidine acetyltransferase"@en , "Spermine/spermidine acetyltransferase;derived protein"@en ; + rdfs:label "BltD"@en , "bltD"@en , "BmtD"@en , "BSU26600"@en , "Bmr2D"@en ; + sybio:AA "MSINIKAVTDDNRAAILDLHVSQNQLSYIESTKVCLEDAKECHYYKPVGLYYEGDLVGFAMYGLFPEYDEDNKNGRVWLDRFFIDERYQGKGLGKKMLKALIQHLAELYKCKRIYLSIFENNIHAIRLYQRFGFQFNGELDFNGEKVMVKEL"@en ; + sybio:accession "16079713"^^xsd:string , "BSU26600"^^xsd:string , "937632"^^xsd:string , "P39909"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:28776 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "17837.775"^^xsd:string ; + sybio:pI "6.110847"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26674"@en . + bo:11364 a sybio:Protein , bo:507 , owl:NamedIndividual , bo:470 ; rdfs:comment "BSU03600;cystine ABC transporter (permease)"@en , "L-cystine transport system permease protein tcyB;YckJ"@en ; rdfs:label "BSU03600"@en , "YckJ"@en , "TcyB"@en , "tcyB"@en , "yckJ"@en ; @@ -78604,24 +78622,6 @@ bo:11364 a sybio:Protein , bo:507 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "11364"@en . -bo:26674 a bo:385 , sybio:Protein , bo:410 , owl:NamedIndividual ; - rdfs:comment "BSU26600;spermine/spermidine acetyltransferase"@en , "Spermine/spermidine acetyltransferase;derived protein"@en ; - rdfs:label "BltD"@en , "bltD"@en , "BmtD"@en , "BSU26600"@en , "Bmr2D"@en ; - sybio:AA "MSINIKAVTDDNRAAILDLHVSQNQLSYIESTKVCLEDAKECHYYKPVGLYYEGDLVGFAMYGLFPEYDEDNKNGRVWLDRFFIDERYQGKGLGKKMLKALIQHLAELYKCKRIYLSIFENNIHAIRLYQRFGFQFNGELDFNGEKVMVKEL"@en ; - sybio:accession "16079713"^^xsd:string , "BSU26600"^^xsd:string , "937632"^^xsd:string , "P39909"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:28776 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "17837.775"^^xsd:string ; - sybio:pI "6.110847"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26674"@en . - bo:6090 a sybio:Operon , owl:NamedIndividual ; rdfs:label "galKT"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -78630,26 +78630,6 @@ bo:6090 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "galK,galT"@en ; tawny:name "6090"@en . -bo:11452 a sybio:Protein , owl:NamedIndividual , bo:490 ; - rdfs:comment "Uncharacterized symporter yhjB"@en , "BSU10450;putative Na+/metabolite cotransporter"@en ; - rdfs:label "BSU10450"@en , "yhjB"@en , "YhjB"@en ; - sybio:AA "MNAALIIIFGVLLLSIFLGIRAQKGKDMNLEQWTVGGRGFGTVFVFLLMAGEIYTTFTFLGGSGWAYGKGGPAFYIIAYGCLAYILSYWLLPAVWTYAKQHKLMSQSDFFTKKYNSPLLGILVSLVGIAALIPYLVLQLKGLGLIVSETSYGKITPTAAIWIGAVSITVYVMVSGIHGSAWISVVKDIMILVVVLFLGVYLPIHYYGGFQDMFQQIETAKPGFLTLPESGQSVAWFSSTVLLTALGFYMWPHTFSASYSAENPKVFRKNAIIMPLYQLVLLFVLFVGFAAILQVPDLNGADGDLSLLRLSLQAFDPWFVGIIGAAGLLTALVPGSMILMSASTLFAKNVYKVIAPRTTEQQVSALAKFLVPVIALISVYFTFKGGNTIVTLLLMGYSLVTQLFPALLFSLLKHNMVTKQGAFAGIIAGVGAVTYITMTETTIGTLFPALPQAAKDLNVGIVALLLNITVMMAVSLMTRKAKSAAADQAA"@en ; - sybio:accession "O07556"^^xsd:string , "BSU10450"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31775 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "52759.66"^^xsd:string ; - sybio:pI "9.378639"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:relatedTo bo:9119 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11452"@en . - bo:30252 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26250"@en ; rdfs:label "BSU26250"@en , "yqaN"@en ; @@ -78697,6 +78677,26 @@ bo:26762 a sybio:Protein , bo:193 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26762"@en . +bo:11452 a sybio:Protein , owl:NamedIndividual , bo:490 ; + rdfs:comment "Uncharacterized symporter yhjB"@en , "BSU10450;putative Na+/metabolite cotransporter"@en ; + rdfs:label "BSU10450"@en , "yhjB"@en , "YhjB"@en ; + sybio:AA "MNAALIIIFGVLLLSIFLGIRAQKGKDMNLEQWTVGGRGFGTVFVFLLMAGEIYTTFTFLGGSGWAYGKGGPAFYIIAYGCLAYILSYWLLPAVWTYAKQHKLMSQSDFFTKKYNSPLLGILVSLVGIAALIPYLVLQLKGLGLIVSETSYGKITPTAAIWIGAVSITVYVMVSGIHGSAWISVVKDIMILVVVLFLGVYLPIHYYGGFQDMFQQIETAKPGFLTLPESGQSVAWFSSTVLLTALGFYMWPHTFSASYSAENPKVFRKNAIIMPLYQLVLLFVLFVGFAAILQVPDLNGADGDLSLLRLSLQAFDPWFVGIIGAAGLLTALVPGSMILMSASTLFAKNVYKVIAPRTTEQQVSALAKFLVPVIALISVYFTFKGGNTIVTLLLMGYSLVTQLFPALLFSLLKHNMVTKQGAFAGIIAGVGAVTYITMTETTIGTLFPALPQAAKDLNVGIVALLLNITVMMAVSLMTRKAKSAAADQAA"@en ; + sybio:accession "O07556"^^xsd:string , "BSU10450"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31775 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "52759.66"^^xsd:string ; + sybio:pI "9.378639"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:relatedTo bo:9119 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11452"@en . + a owl:Class ; rdfs:comment "Any process that protect an organism from invading foreign DNA by methylation of self DNA at specific sequences and nucleolytic cleavage of unmethylated foreign DNA."@en ; @@ -78734,6 +78734,25 @@ bo:30340 a sybio:CDS , owl:NamedIndividual ; "135.0"@en ; tawny:name "30340"@en . +bo:11540 a bo:485 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU36020;transcriptional regulator (LysR family)"@en , "HTH-type transcriptional regulator alsR"@en ; + rdfs:label "BSU36020"@en , "AlsR"@en , "alsR"@en ; + sybio:AA "MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAAGEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSVKIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLTSKESITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMTFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHISNCQQTRTKESDAGT"@en ; + sybio:accession "Q04778"^^xsd:string , "BSU36020"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:32119 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "34331.465"^^xsd:string ; + sybio:pI "7.114769"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11540"@en ; + owl:sameAs bo:6804 . + bo:26850 a owl:NamedIndividual , bo:188 , bo:1897 , sybio:Protein ; rdfs:comment "Deoxyribose-phosphate aldolase;derived protein"@en , "BSU39420;deoxyribose-phosphate aldolase"@en ; rdfs:label "BSU39420"@en , "Dra"@en , "deoC"@en , "DeoC"@en ; @@ -78754,25 +78773,6 @@ bo:26850 a owl:NamedIndividual , bo:188 , bo:1897 , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "26850"@en . -bo:11540 a bo:485 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU36020;transcriptional regulator (LysR family)"@en , "HTH-type transcriptional regulator alsR"@en ; - rdfs:label "BSU36020"@en , "AlsR"@en , "alsR"@en ; - sybio:AA "MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAAGEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSVKIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLTSKESITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMTFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHISNCQQTRTKESDAGT"@en ; - sybio:accession "Q04778"^^xsd:string , "BSU36020"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:32119 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "34331.465"^^xsd:string ; - sybio:pI "7.114769"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11540"@en ; - owl:sameAs bo:6804 . - bo:24041 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "phenanthrene 9,10-monooxygenase"@en , "C11422 + C00007 + C00004 + C00080 <=> C11429 + C00001 + C00003"@en , "cpd:C11422 => cpd:C11422"@en ; @@ -78794,11 +78794,11 @@ bo:24041 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.16"^^xsd:string ; + owl:hasValue "GTP-CYCLOHYDRO-I-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GTP-CYCLOHYDRO-I-RXN"^^xsd:string ; + owl:hasValue "3.5.4.16"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -78951,22 +78951,22 @@ bo:32848 a sybio:CDS , owl:NamedIndividual ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid."@en ; - rdfs:label "ornithine--ketoglutarate aminotransferase"@en , "L-ornithine:2-oxo-acid aminotransferase"@en , "L-ornithine 5-aminotransferase"@en , "OAT"@en , "ornithine delta-transaminase"@en , "ornithine 5-aminotransferase"@en , "ornithine--oxo-acid transaminase"@en , "ornithine ketoacid aminotransferase"@en , "ornithine--keto acid transaminase"@en , "ornithine--2-oxoacid aminotransferase"@en , "GabT"@en , "GO:0004587"@en , "ornithine aminotransferase"@en , "ornithine-oxo-acid transaminase"@en , "ornithine-oxo-acid aminotransferase"@en , "ornithine--oxo acid aminotransferase"@en , "ornithine--keto acid aminotransferase"@en , "ornithine transaminase"@en , "L-ornithine:alpha-ketoglutarate delta-aminotransferase"@en , "ornithine:alpha-oxoglutarate transaminase"@en , "ornithine--alpha-ketoglutarate aminotransferase"@en , "L-ornithine aminotransferase"@en ; + rdfs:label "ornithine--ketoglutarate aminotransferase"@en , "L-ornithine:2-oxo-acid aminotransferase"@en , "L-ornithine 5-aminotransferase"@en , "OAT"@en , "ornithine delta-transaminase"@en , "ornithine 5-aminotransferase"@en , "ornithine--oxo-acid transaminase"@en , "ornithine ketoacid aminotransferase"@en , "ornithine--keto acid transaminase"@en , "GabT"@en , "ornithine--2-oxoacid aminotransferase"@en , "GO:0004587"@en , "ornithine aminotransferase"@en , "ornithine-oxo-acid transaminase"@en , "ornithine--oxo acid aminotransferase"@en , "ornithine-oxo-acid aminotransferase"@en , "ornithine--keto acid aminotransferase"@en , "ornithine transaminase"@en , "L-ornithine:alpha-ketoglutarate delta-aminotransferase"@en , "ornithine:alpha-oxoglutarate transaminase"@en , "ornithine--alpha-ketoglutarate aminotransferase"@en , "L-ornithine aminotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004587"^^xsd:string ; + owl:hasValue "12532 \"ornithine-oxo-acid transaminase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "2.6.1.13"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.13"^^xsd:string ; + owl:hasValue "ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12532 \"ornithine-oxo-acid transaminase activity\""^^xsd:string ; + owl:hasValue "GO:0004587"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -79033,11 +79033,11 @@ bo:30039 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004851"^^xsd:string ; + owl:hasValue "UROPORIIIMETHYLTRANSA-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UROPORIIIMETHYLTRANSA-RXN"^^xsd:string ; + owl:hasValue "GO:0004851"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -79583,7 +79583,7 @@ bo:12420 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AIRCARBOXY-RXN"^^xsd:string ; + owl:hasValue "4.1.1.21"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -79591,7 +79591,7 @@ bo:12420 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.21"^^xsd:string ; + owl:hasValue "AIRCARBOXY-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -79603,19 +79603,19 @@ bo:12420 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0004814"@en , "arginyl-tRNA synthetase"@en , "arginyl-transfer ribonucleate synthetase"@en , "arginine-tRNA ligase"@en , "arginyl-transfer RNA synthetase"@en , "L-arginine:tRNAArg ligase"@en , "arginyl transfer ribonucleic acid synthetase"@en , "arginine translase"@en , "arginine-tRNA synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004814"^^xsd:string ; + owl:hasValue "15079 \"arginine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.19"^^xsd:string ; + owl:hasValue "ARGININE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARGININE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004814"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15079 \"arginine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "6.1.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -80040,6 +80040,18 @@ bo:16587 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08247"@en ; tawny:name "16587"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins."@en ; + rdfs:label "proline metabolism"@en , "proline metabolic process"@en , "GO:0006560"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006560"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16675 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "phosphogluconate 2-dehydrogenase [EC:1.1.1.43]"@en ; rdfs:label "E1.1.1.43"@en ; @@ -80053,18 +80065,6 @@ bo:16675 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00032"@en ; tawny:name "16675"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins."@en ; - rdfs:label "proline metabolism"@en , "proline metabolic process"@en , "GO:0006560"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006560"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28258 a owl:NamedIndividual , sybio:RBS ; rdfs:label "epsA_RBS"@en ; sybio:NA "AGGCTGAAGGCTATGAATAC"^^xsd:string ; @@ -80474,11 +80474,11 @@ bo:17680 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E6.2.1.17"@en , "PRPE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050218"^^xsd:string ; + owl:hasValue "COG0365"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0365"^^xsd:string ; + owl:hasValue "0050218"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -80657,16 +80657,6 @@ bo:4985 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4984 ; tawny:name "4985"@en . -bo:16638 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "trypanothione synthetase/amidase [EC:6.3.1.9 3.5.1.-]"@en ; - rdfs:label "TRYS"@en ; - sybio:accession "0047479"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16637 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01833"@en ; - tawny:name "16638"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of alanine, 2-aminopropanoic acid."@en ; @@ -80679,6 +80669,16 @@ bo:16638 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16638 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "trypanothione synthetase/amidase [EC:6.3.1.9 3.5.1.-]"@en ; + rdfs:label "TRYS"@en ; + sybio:accession "0047479"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16637 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01833"@en ; + tawny:name "16638"@en . + bo:16726 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "UDP-glucuronate decarboxylase [EC:4.1.1.35]"@en ; rdfs:label "UXS1"@en ; @@ -80890,11 +80890,11 @@ bo:17379 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "small GTPase-mediated signal transduction"@en , "small GTPase mediated signal transduction"@en , "GO:0007264"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007264"^^xsd:string ; + owl:hasValue "470168 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507829 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "448659 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -80902,131 +80902,131 @@ bo:17379 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507441 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "547821 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531369 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "531376 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552389 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "469787 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552396 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "507829 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592763 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "531369 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581857 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "568645 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "194315 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "595490 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557994 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "526573 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536745 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "194315 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558004 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "552389 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487858 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "536745 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526573 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "592763 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531376 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "542501 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487481 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "568653 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542501 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "526319 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449054 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "187706 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581849 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "585923 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547821 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "557994 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526319 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "592755 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "187706 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "536751 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517445 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "507441 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568653 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "487481 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470168 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "GO:0007264"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547828 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "517445 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595490 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "547828 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469787 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "542494 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542494 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "552396 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568645 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "558004 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592755 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "487858 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585923 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "581849 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536751 \"Signaling by Rho GTPases\""^^xsd:string ; + owl:hasValue "581857 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448659 \"Signalling to p38 via RIT and RIN\""^^xsd:string ; + owl:hasValue "449054 \"Signaling by Rho GTPases\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -81103,16 +81103,6 @@ bo:666 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "666"@en . -bo:17643 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "E-phenylitaconyl-CoA hydratase [EC:4.2.1.-]"@en ; - rdfs:label "BBSH"@en ; - sybio:accession "0018809"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17642 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07546"@en ; - tawny:name "17643"@en . - bo:5990 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ywlB_terminator"@en ; sybio:NA "TATTAGCGTTGTCCACAATTTGTGGATAACGCTTGTTTTATTACAGG"^^xsd:string ; @@ -81125,6 +81115,16 @@ bo:5990 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:5989 ; tawny:name "5990"@en . +bo:17643 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "E-phenylitaconyl-CoA hydratase [EC:4.2.1.-]"@en ; + rdfs:label "BBSH"@en ; + sybio:accession "0018809"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17642 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07546"@en ; + tawny:name "17643"@en . + bo:29226 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01710"@en ; rdfs:label "BSU01710"@en , "ybbJ"@en ; @@ -81358,18 +81358,6 @@ bo:21044 a owl:NamedIndividual , sybio:Reaction ; sybio:sharesIntermediate bo:11790 , bo:11570 , bo:22863 , bo:11607 , bo:11793 , bo:11797 , bo:11620 ; tawny:name "21044"@en . -bo:21132 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "guanosine"@en , "C00387 + C00009 <=> C00242 + C00620"@en , "orthophosphate ribosyltransferase"@en , "cpd:C00387 <=> cpd:C00387"@en ; - sybio:accession "RN:R02147"^^xsd:string ; - sybio:catalyzedBy bo:19755 , bo:19853 ; - sybio:catalyzingClass bo:19756 , bo:21123 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11574 ; - sybio:sharesIntermediate bo:21316 ; - tawny:name "21132"@en . - a owl:Class ; rdfs:comment "The process by which a virion enters a host cell, including virion attachment and penetration."@en ; @@ -81380,16 +81368,28 @@ bo:21132 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "168270 \"Fusion and Uncoating of the Influenza Virion\""^^xsd:string ; + owl:hasValue "168272 \"Binding of the influenza virion to the host cell\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "168272 \"Binding of the influenza virion to the host cell\""^^xsd:string ; + owl:hasValue "168270 \"Fusion and Uncoating of the Influenza Virion\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:21132 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "guanosine"@en , "C00387 + C00009 <=> C00242 + C00620"@en , "orthophosphate ribosyltransferase"@en , "cpd:C00387 <=> cpd:C00387"@en ; + sybio:accession "RN:R02147"^^xsd:string ; + sybio:catalyzedBy bo:19755 , bo:19853 ; + sybio:catalyzingClass bo:19756 , bo:21123 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11574 ; + sybio:sharesIntermediate bo:21316 ; + tawny:name "21132"@en . + bo:18296 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "nitric-oxide reductase NorE protein [EC:1.7.99.7]"@en ; rdfs:label "NORE"@en ; @@ -81682,11 +81682,11 @@ bo:717 a owl:Class ; rdfs:label "2-methylcitrate hydro-lyase"@en , "2-hydroxybutane-1 2 3-tricarboxylate hydro-lyase"@en , "2-methylcitrate dehydratase"@en , "2 3-tricarboxylate hydro-lyase 2 3-tricarboxylate-forming]"@en , "GO:0047547"@en , "prpD"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047547"^^xsd:string ; + owl:hasValue "2-METHYLCITRATE-DEHYDRATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2-METHYLCITRATE-DEHYDRATASE-RXN"^^xsd:string ; + owl:hasValue "GO:0047547"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -82341,6 +82341,18 @@ bo:25298 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11743 ; tawny:name "25298"@en . +bo:25386 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.3.1.72"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.3.1.72"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25386"@en . + bo:10076 a sybio:Protein , owl:NamedIndividual , bo:614 ; rdfs:comment "Uncharacterized NAD(P)H oxidoreductase ydeQ"@en , "BSU05300;putative NAD(P)H oxidoreductase"@en ; rdfs:label "BSU05300"@en , "ydeQ"@en , "YdeQ"@en ; @@ -82359,17 +82371,16 @@ bo:10076 a sybio:Protein , owl:NamedIndividual , bo:614 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10076"@en . -bo:25386 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.3.1.72"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.72"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25386"@en . +bo:25474 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "Teasterone"@en , "C15791 <=> C15792"@en , "brassinosteroid C3-oxidoreductase"@en , "cpd:C15792 <=> cpd:C15792"@en ; + sybio:accession "RN:R07444"^^xsd:string ; + sybio:catalyzedBy bo:19183 ; + sybio:catalyzingClass bo:19300 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25474"@en . bo:10164 a owl:NamedIndividual , sybio:Protein , bo:888 , bo:249 ; rdfs:comment "putative efflux transporter;BSU18370"@en , "Probable multidrug resistance protein yoeA"@en ; @@ -82390,16 +82401,17 @@ bo:10164 a owl:NamedIndividual , sybio:Protein , bo:888 , sybio:taxId "[224308, 1423]"@en ; tawny:name "10164"@en . -bo:25474 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "Teasterone"@en , "C15791 <=> C15792"@en , "brassinosteroid C3-oxidoreductase"@en , "cpd:C15792 <=> cpd:C15792"@en ; - sybio:accession "RN:R07444"^^xsd:string ; - sybio:catalyzedBy bo:19183 ; - sybio:catalyzingClass bo:19300 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25474"@en . +bo:25562 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.11.23"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.11.23"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25562"@en . bo:10252 a sybio:Protein , owl:NamedIndividual , bo:1315 ; rdfs:comment "SCO1 protein homolog"@en , "BSU21750;assembly factor BSco of the Cu(A) site of cytochrome c oxidase"@en ; @@ -82420,18 +82432,6 @@ bo:10252 a sybio:Protein , owl:NamedIndividual , bo:1315 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10252"@en . -bo:25562 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.11.23"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.11.23"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25562"@en . - bo:6569 a owl:NamedIndividual , sybio:TF ; rdfs:comment "transcriptional antiterminator"@en ; rdfs:label "ManR"@en , "YjdC"@en , "BSU12000"@en ; @@ -82657,6 +82657,23 @@ bo:4200 a sybio:Operator , sybio:PositivelyRegulatedOperator sybio:regulationType "Positive"^^xsd:string ; tawny:name "4200"@en . +bo:26391 a owl:NamedIndividual , sybio:Protein , bo:1116 ; + rdfs:comment "Thiamine pyrophosphokinase;derived protein"@en , "thiamine pyrophosphokinase;BSU15800"@en ; + rdfs:label "YloS"@en , "BSU15800"@en , "ThiN"@en , "thiN"@en ; + sybio:AA "MKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFAKGILIMIRSTD"@en ; + sybio:accession "16078643"^^xsd:string , "BSU15800"^^xsd:string , "O34664"^^xsd:string , "937714"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32830 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "24097.675"^^xsd:string ; + sybio:pI "5.342232"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26391"@en . + bo:11081 a owl:NamedIndividual , sybio:Protein , bo:1795 , bo:1794 ; rdfs:comment "Amidase enhancer"@en , "BSU35630;modifier protein of major autolysin LytC"@en ; rdfs:label "lytB"@en , "BSU35630"@en , "LytB"@en , "CwbA"@en ; @@ -82676,23 +82693,6 @@ bo:11081 a owl:NamedIndividual , sybio:Protein , bo:1795 , sybio:taxId "[224308, 1423]"@en ; tawny:name "11081"@en . -bo:26391 a owl:NamedIndividual , sybio:Protein , bo:1116 ; - rdfs:comment "Thiamine pyrophosphokinase;derived protein"@en , "thiamine pyrophosphokinase;BSU15800"@en ; - rdfs:label "YloS"@en , "BSU15800"@en , "ThiN"@en , "thiN"@en ; - sybio:AA "MKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFAKGILIMIRSTD"@en ; - sybio:accession "16078643"^^xsd:string , "BSU15800"^^xsd:string , "O34664"^^xsd:string , "937714"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32830 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "24097.675"^^xsd:string ; - sybio:pI "5.342232"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26391"@en . - bo:7398 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Sfp-like 4'-phosphopantetheine transferase"@en ; rdfs:label "lpaS"@en ; @@ -83613,22 +83613,22 @@ bo:13816 a owl:NamedIndividual , sybio:Compound ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: 2 L-glutamate + NADP+ = L-glutamine + 2-oxoglutarate + NADPH + H+."@en ; - rdfs:label "NADPH-glutamate synthase"@en , "GOGAT"@en , "glutamine-ketoglutaric aminotransferase"@en , "L-glutamate synthase"@en , "glutamate synthase (NADPH)"@en , "L-glutamate:NADP+ oxidoreductase"@en , "L-glutamate synthetase"@en , "glutamate synthase"@en , "glutamate synthetase"@en , "GO:0004355"@en , "glutamine amide-2-oxoglutarate aminotransferase"@en , "NADPH-dependent glutamate synthase"@en , "NADPH-linked glutamate synthase"@en , "L-glutamine:2-oxoglutarate aminotransferase NADPH oxidizing"@en ; + rdfs:label "NADPH-glutamate synthase"@en , "GOGAT"@en , "glutamine-ketoglutaric aminotransferase"@en , "L-glutamate synthase"@en , "glutamate synthase (NADPH)"@en , "glutamate synthase"@en , "L-glutamate:NADP+ oxidoreductase"@en , "L-glutamate synthetase"@en , "glutamate synthetase"@en , "GO:0004355"@en , "glutamine amide-2-oxoglutarate aminotransferase"@en , "NADPH-dependent glutamate synthase"@en , "NADPH-linked glutamate synthase"@en , "L-glutamine:2-oxoglutarate aminotransferase NADPH oxidizing"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUGLNSYN-PWY"^^xsd:string ; + owl:hasValue "GLUTAMATESYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004355"^^xsd:string ; + owl:hasValue "GLUTSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0004355"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTAMATESYN-RXN"^^xsd:string ; + owl:hasValue "GLUGLNSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -83973,15 +83973,15 @@ bo:9371 a sybio:Protein , bo:1125 , owl:NamedIndividual ; rdfs:label "GO:0043809"@en , "1-PMT-ribulose dehydratase"@en , "S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase 3-dioxopentyl-phosphate-forming]"@en , "methylthioribulose-1-phosphate dehydratase"@en , "S-methyl-5-thio-D-ribulose-1-phosphate 3-dioxopentyl-phosphate-forming]"@en , "methylthioribulose 1-phosphate dehydratase"@en , "S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.109"^^xsd:string ; + owl:hasValue "R145-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R145-RXN"^^xsd:string ; + owl:hasValue "GO:0043809"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043809"^^xsd:string ; + owl:hasValue "4.2.1.109"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -84109,7 +84109,7 @@ bo:21773 a sybio:EC , owl:Class , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+."@en ; - rdfs:label "enoyl-ACP reductase"@en , "NADH-enoyl acyl carrier protein reductase"@en , "enoyl-acyl-carrier-protein reductase"@en , "NADH-specific enoyl-ACP reductase"@en , "enoyl-[acyl-carrier-protein] reductase (NADH)"@en , "acyl-acyl-carrier-protein:NAD+ oxidoreductase"@en , "enoyl-[acyl-carrier protein] reductase"@en , "GO:0004318"@en ; + rdfs:label "enoyl-ACP reductase"@en , "enoyl-[acyl-carrier protein] reductase"@en , "NADH-enoyl acyl carrier protein reductase"@en , "enoyl-acyl-carrier-protein reductase"@en , "NADH-specific enoyl-ACP reductase"@en , "enoyl-[acyl-carrier-protein] reductase (NADH)"@en , "acyl-acyl-carrier-protein:NAD+ oxidoreductase"@en , "GO:0004318"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "1.3.1.9"^^xsd:string ; @@ -84142,11 +84142,11 @@ bo:15298 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "APAH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0639"^^xsd:string ; + owl:hasValue "0008803"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008803"^^xsd:string ; + owl:hasValue "COG0639"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -84537,11 +84537,11 @@ bo:21648 a sybio:EC , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.17-RXN"^^xsd:string ; + owl:hasValue "GO:0008697"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008697"^^xsd:string ; + owl:hasValue "5.3.1.17-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -84599,15 +84599,15 @@ bo:21824 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "D-gluconate:NADP+ oxidoreductase"@en , "2-keto-D-gluconate reductase"@en , "gluconate 2-dehydrogenase"@en , "2-ketogluconate reductase"@en , "GO:0008873"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008873"^^xsd:string ; + owl:hasValue "1.1.1.215"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.215"^^xsd:string ; + owl:hasValue "1.1.1.215-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.215-RXN"^^xsd:string ; + owl:hasValue "GO:0008873"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -84618,11 +84618,11 @@ bo:18988 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "LPXD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1044"^^xsd:string ; + owl:hasValue "0016410"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016410"^^xsd:string ; + owl:hasValue "COG1044"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -84730,11 +84730,11 @@ bo:15613 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "DCYD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2515"^^xsd:string ; + owl:hasValue "0019148"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0019148"^^xsd:string ; + owl:hasValue "COG2515"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -84761,11 +84761,11 @@ bo:16267 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GO:0033971"@en , "5-hydroxyisourate amidohydrolase"@en , "hydroxyisourate hydrolase"@en , "5-hydroxyisourate hydrolase"@en , "HIUHase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.17"^^xsd:string ; + owl:hasValue "3.5.2.17-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.17-RXN"^^xsd:string ; + owl:hasValue "3.5.2.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -84793,16 +84793,6 @@ bo:16355 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00669"@en ; tawny:name "16355"@en . -bo:16443 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "coumermycin A biosynthesis protein CouL"@en ; - rdfs:label "COUL"@en ; - sybio:accession "Q9F8U8"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16442 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12725"@en ; - tawny:name "16443"@en . - bo:4790 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yhcV_terminator"@en ; sybio:NA "CATTAATAAGAAAGAGCTTGCAGTGTGCAGGCTCTTTCTTCACATAAAA"^^xsd:string ; @@ -84825,6 +84815,26 @@ bo:28026 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30847 ; tawny:name "28026"@en . +bo:16443 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "coumermycin A biosynthesis protein CouL"@en ; + rdfs:label "COUL"@en ; + sybio:accession "Q9F8U8"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16442 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12725"@en ; + tawny:name "16443"@en . + +bo:28114 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "yhdF_RBS_upstream"@en ; + sybio:NA "ACCA"^^xsd:string ; + sybio:begin "1022207"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1022210"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28113 ; + tawny:name "28114"@en . + bo:16531 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "2-phosphinomethylmalic acid synthase"@en ; rdfs:label "PMS"@en ; @@ -84849,16 +84859,6 @@ bo:22389 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11607 ; tawny:name "22389"@en . -bo:28114 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "yhdF_RBS_upstream"@en ; - sybio:NA "ACCA"^^xsd:string ; - sybio:begin "1022207"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1022210"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28113 ; - tawny:name "28114"@en . - bo:22477 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C00596 => cpd:C00596"@en , "C00596 + C00001 <=> C03589"@en ; @@ -85089,27 +85089,27 @@ bo:17272 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04628"@en ; tawny:name "17272"@en . -bo:383 a owl:Class ; - rdfs:label "COG0794"@en ; - rdfs:subClassOf bo:189 , sybio:COG ; +bo:1115 a owl:Class ; + rdfs:label "COG0036"@en ; + rdfs:subClassOf bo:365 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0794"^^xsd:string ; + owl:hasValue "COG0036"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "383"@en . + tawny:name "1115"@en . -bo:1115 a owl:Class ; - rdfs:label "COG0036"@en ; - rdfs:subClassOf bo:365 , sybio:COG ; +bo:383 a owl:Class ; + rdfs:label "COG0794"@en ; + rdfs:subClassOf bo:189 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0036"^^xsd:string ; + owl:hasValue "COG0794"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1115"@en . + tawny:name "383"@en . bo:10981 a sybio:Protein , bo:353 , owl:NamedIndividual , bo:356 ; rdfs:comment "BSU33160;putative vitamin B12 transport system, ATPase component;"@en , "Uncharacterized ABC transporter ATP-binding protein yvrA"@en ; @@ -85140,24 +85140,13 @@ bo:17360 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573"@en ; tawny:name "17360"@en . -bo:471 a owl:Class ; - rdfs:label "COG4176"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4176"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "471"@en . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: meso-2,6-diaminoheptanedioate = L-lysine + CO2."@en ; rdfs:label "DAP-decarboxylase"@en , "DAP decarboxylase"@en , "meso-2 6-diaminoheptanedioate carboxy-lyase"@en , "meso-diaminopimelate decarboxylase"@en , "diaminopimelate decarboxylase"@en , "GO:0008836"@en , "diaminopimelic acid decarboxylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.20"^^xsd:string ; + owl:hasValue "DIAMINOPIMDECARB-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -85165,7 +85154,7 @@ bo:471 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIAMINOPIMDECARB-RXN"^^xsd:string ; + owl:hasValue "4.1.1.20"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -85182,6 +85171,17 @@ bo:1203 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1203"@en . +bo:471 a owl:Class ; + rdfs:label "COG4176"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG4176"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "471"@en . + bo:29031 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU40470"@en ; rdfs:label "BSU40470"@en , "yycC"@en ; @@ -85259,6 +85259,14 @@ bo:4577 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "groES,groEL"@en ; tawny:name "4577"@en . +bo:4665 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yflMK"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32712 , bo:31049 ; + sybio:operonGenes "yflM,yflK"@en ; + tawny:name "4665"@en . + bo:16318 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]"@en ; rdfs:label "E1.13.11.6"@en , "HAAO"@en ; @@ -85272,14 +85280,6 @@ bo:16318 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00452"@en ; tawny:name "16318"@en . -bo:4665 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yflMK"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32712 , bo:31049 ; - sybio:operonGenes "yflM,yflK"@en ; - tawny:name "4665"@en . - bo:16406 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "3-dehydroshikimate dehydratase [EC:4.2.1.-]"@en ; rdfs:label "QUIC"@en ; @@ -85323,11 +85323,11 @@ bo:4841 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.23-RXN"^^xsd:string ; + owl:hasValue "GO:0046523"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046523"^^xsd:string ; + owl:hasValue "5.3.1.23-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -85361,11 +85361,11 @@ bo:22616 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "nonapoptotic programmed cell death"@en , "non-apoptotic programmed cell death"@en , "programmed cell death"@en , "GO:0012501"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Programmed_cell_death"^^xsd:string ; + owl:hasValue "GO:0016244"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016244"^^xsd:string ; + owl:hasValue "Programmed_cell_death"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -85604,11 +85604,11 @@ bo:434 a owl:Class ; rdfs:label "acid-amino acid ligase"@en , "GO:0016881"@en , "peptide synthase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.-"^^xsd:string ; + owl:hasValue "GO:0016881"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016881"^^xsd:string ; + owl:hasValue "6.3.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -85803,22 +85803,6 @@ bo:30485 a sybio:CDS , owl:NamedIndividual ; "34.0"@en ; tawny:name "30485"@en . -bo:11685 a owl:Class , sybio:Pathway , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00630.png"@en ; - rdfs:label "Glyoxylate and dicarboxylate metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00630"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11549 , bo:11734 , bo:11687 , bo:11612 , bo:11677 ; - sybio:derivesFrom bo:11686 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00630"@en ; - tawny:name "11685"@en . - bo:26995 a sybio:Protein , bo:401 , owl:NamedIndividual , bo:302 ; rdfs:comment "Transcriptional regulatory protein liaR;derived protein"@en , "two-component response regulator [YvqE] responding to cell wall stress;BSU33080;"@en ; rdfs:label "liaR"@en , "BSU33080"@en , "two-component response regulator [YvqE] responding to cell wall stress"@en , "YvqC"@en , "LiaR"@en ; @@ -85843,6 +85827,22 @@ bo:26995 a sybio:Protein , bo:401 , owl:NamedIndividual , tawny:name "26995"@en ; owl:sameAs bo:6560 . +bo:11685 a owl:Class , sybio:Pathway , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00630.png"@en ; + rdfs:label "Glyoxylate and dicarboxylate metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00630"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11549 , bo:11734 , bo:11687 , bo:11612 , bo:11677 ; + sybio:derivesFrom bo:11686 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00630"@en ; + tawny:name "11685"@en . + bo:18064 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "cytochrome c heme-lyase [EC:4.4.1.17]"@en ; rdfs:label "E4.4.1.17"@en ; @@ -86235,6 +86235,22 @@ bo:30448 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30448"@en . +bo:11648 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00500.png"@en ; + rdfs:label "Starch and sucrose metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00500"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11553 , bo:11546 , bo:11652 ; + sybio:derivesFrom bo:11649 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00500"@en ; + tawny:name "11648"@en . + bo:26958 a bo:571 , bo:403 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Sporulation kinase A;derived protein"@en , "BSU13990;sporulation-specific ATP-dependent protein histidine kinase"@en ; rdfs:label "SpoIIJ"@en , "kinA"@en , "SpoIIF"@en , "GsiC"@en , "BSU13990"@en , "KinA"@en ; @@ -86255,22 +86271,6 @@ bo:26958 a bo:571 , bo:403 , owl:NamedIndividual , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26958"@en . -bo:11648 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00500.png"@en ; - rdfs:label "Starch and sucrose metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00500"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11553 , bo:11546 , bo:11652 ; - sybio:derivesFrom bo:11649 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00500"@en ; - tawny:name "11648"@en . - bo:18027 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "formylmethanofuran dehydrogenase subunit E [EC:1.2.99.5]"@en ; rdfs:label "FMDE"@en , "E1.2.99.5E"@en ; @@ -86790,11 +86790,11 @@ bo:19120 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E3.5.1.24"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0045302"^^xsd:string ; + owl:hasValue "COG3049"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3049"^^xsd:string ; + owl:hasValue "0045302"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -87049,6 +87049,16 @@ bo:32370 a sybio:CDS , owl:NamedIndividual ; "214.0"@en ; tawny:name "32370"@en . +bo:13570 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C4H8O"@en ; + rdfs:label "Butanal"@en , "C4H8O"@en , "Butyraldehyde"@en ; + sybio:accession "C01412"^^xsd:string , "15743"^^xsd:string , "4600"^^xsd:string , "B00287"^^xsd:string , "123-72-8"^^xsd:string ; + sybio:consumedBy bo:24349 , bo:24362 , bo:24328 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01412"@en ; + tawny:name "13570"@en . + bo:28880 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU37620"@en ; rdfs:label "BSU37620"@en , "rsfA"@en , "ywfN"@en , "ipa-92r"@en ; @@ -87081,16 +87091,6 @@ bo:28880 a sybio:CDS , owl:NamedIndividual ; "24.0"@en ; tawny:name "28880"@en . -bo:13570 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C4H8O"@en ; - rdfs:label "Butanal"@en , "C4H8O"@en , "Butyraldehyde"@en ; - sybio:accession "C01412"^^xsd:string , "15743"^^xsd:string , "4600"^^xsd:string , "B00287"^^xsd:string , "123-72-8"^^xsd:string ; - sybio:consumedBy bo:24349 , bo:24362 , bo:24328 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01412"@en ; - tawny:name "13570"@en . - bo:9887 a owl:NamedIndividual , sybio:Protein , bo:412 ; rdfs:comment "Uncharacterized protein ylaF"@en , "conserved hypothetical protein;BSU14760"@en ; rdfs:label "YlaF"@en , "ylaF"@en , "BSU14760"@en ; @@ -87182,16 +87182,6 @@ bo:31328 a owl:NamedIndividual , sybio:CDS ; "57.0"@en ; tawny:name "31328"@en . -bo:27838 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "yqdB_RBS_upstream"@en ; - sybio:NA "AGCTTATCCTCCGA"^^xsd:string ; - sybio:begin "2678206"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2678219"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27837 ; - tawny:name "27838"@en . - bo:12528 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C9H21N2O3"@en ; rdfs:label "C9H21N2O3"@en , "3-Hydroxy-N6,N6,N6-trimethyl-L-lysine"@en ; @@ -87203,6 +87193,16 @@ bo:12528 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01259"@en ; tawny:name "12528"@en . +bo:27838 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "yqdB_RBS_upstream"@en ; + sybio:NA "AGCTTATCCTCCGA"^^xsd:string ; + sybio:begin "2678206"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2678219"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27837 ; + tawny:name "27838"@en . + bo:7254 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Putative transmembrane protein"@en ; rdfs:label "orf7C60"@en ; @@ -87634,11 +87634,11 @@ bo:13533 a sybio:Compound , owl:NamedIndividual ; rdfs:label "aspartokinase"@en , "aspartate kinase"@en , "beta-aspartokinase"@en , "ATP:L-aspartate 4-phosphotransferase"@en , "GO:0004072"@en , "aspartic kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004072"^^xsd:string ; + owl:hasValue "2.7.2.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.4"^^xsd:string ; + owl:hasValue "GO:0004072"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -87718,11 +87718,11 @@ bo:13621 a sybio:Compound , owl:NamedIndividual ; rdfs:label "dihydroxy acid dehydrase"@en , "acetohydroxyacid dehydratase"@en , "2 3-dihydroxy-acid hydro-lyase"@en , "dihydroxy-acid dehydratase"@en , "alpha beta-dihydroxyacid dehydratase"@en , "DHAD"@en , "alpha beta-dihydroxyisovalerate dehydratase"@en , "GO:0004160"@en , "2 3-dihydroxyisovalerate dehydratase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIHYDROXYISOVALDEHYDRAT-RXN"^^xsd:string ; + owl:hasValue "4.2.1.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.9"^^xsd:string ; + owl:hasValue "DIHYDROXYISOVALDEHYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -87756,11 +87756,11 @@ bo:9938 a owl:NamedIndividual , bo:200 , sybio:Protein ; rdfs:label "20S core complex"@en , "macropain"@en , "PA28gamma-20S proteasome"@en , "proteasome core complex"@en , "GO:0005839"@en , "20S proteasome"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000503"^^xsd:string ; + owl:hasValue "GO:0005839"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005839"^^xsd:string ; + owl:hasValue "GO:0000503"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -88179,15 +88179,15 @@ bo:28806 a sybio:CDS , owl:NamedIndividual ; rdfs:label "alkaline phosphomonoesterase"@en , "phosphomonoesterase"@en , "orthophosphoric-monoester phosphohydrolase"@en , "alkaline phosphohydrolase"@en , "GO:0004035"@en , "alkaline phenyl phosphatase"@en , "phosphate-monoester phosphohydrolase"@en , "alkaline phosphatase"@en , "glycerophosphatase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.1"^^xsd:string ; + owl:hasValue "GO:0004035"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALKAPHOSPHA-RXN"^^xsd:string ; + owl:hasValue "3.1.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004035"^^xsd:string ; + owl:hasValue "ALKAPHOSPHA-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -88211,10 +88211,10 @@ bo:2497 a sybio:Protein , owl:NamedIndividual ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: L-cystathionine + H2O = L-cysteine + NH3 + 2-oxobutanoate."@en ; - rdfs:label "cystine desulfhydrase"@en , "L-cystathionine cysteine-lyase"@en , "GO:0004123"@en , "gamma-cystathionase"@en , "cystathionase"@en , "cysteine desulfhydrase"@en , "homoserine deaminase"@en , "cystalysin"@en , "cystathioninase"@en , "cystathionine gamma-lyase"@en , "homoserine deaminase-cystathionase"@en , "gamma-CTL"@en , "homoserine dehydratase"@en ; + rdfs:label "cystine desulfhydrase"@en , "L-cystathionine cysteine-lyase"@en , "GO:0004123"@en , "gamma-cystathionase"@en , "cystathionase"@en , "cysteine desulfhydrase"@en , "homoserine deaminase"@en , "cystalysin"@en , "cystathioninase"@en , "cystathionine gamma-lyase"@en , "gamma-CTL"@en , "homoserine deaminase-cystathionase"@en , "homoserine dehydratase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYSTAGLY-RXN"^^xsd:string ; + owl:hasValue "GO:0016225"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -88222,7 +88222,7 @@ bo:2497 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016225"^^xsd:string ; + owl:hasValue "CYSTAGLY-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -88269,91 +88269,91 @@ bo:2673 a owl:NamedIndividual , sybio:TF ; rdfs:label "cellular protein metabolic process"@en , "GO:0044267"@en , "cellular protein metabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599777 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "598178 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517286 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "552209 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585742 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "526164 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595285 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "392499 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531061 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "542138 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552209 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "536443 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597396 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "557676 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557676 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "597396 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526164 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "592395 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469599 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "547505 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581498 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "GO:0044267"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448469 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "469599 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598178 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "599777 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592395 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "448469 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542138 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "595285 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568296 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "487318 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "392499 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "517286 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507269 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "581498 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536443 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "568296 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0044267"^^xsd:string ; + owl:hasValue "585742 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547505 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "531061 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487318 \"Metabolism of proteins\""^^xsd:string ; + owl:hasValue "507269 \"Metabolism of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -88861,11 +88861,11 @@ bo:18793 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "UBIA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0382"^^xsd:string ; + owl:hasValue "0008412"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008412"^^xsd:string ; + owl:hasValue "COG0382"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -88990,11 +88990,11 @@ bo:17839 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "THIK"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0019165"^^xsd:string ; + owl:hasValue "COG0510"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0510"^^xsd:string ; + owl:hasValue "0019165"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -89545,6 +89545,16 @@ bo:16122 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12732"@en ; tawny:name "16122"@en . +bo:25795 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "chlorophenol 4-monooxygenase - reversible"@en ; + rdfs:label "C07101 + 2 C00004 + C00007 <=> C06600 + 2 C00003 + C01328 + C00698"@en , "cpd:C07101 <=> cpd:C07101"@en ; + sybio:accession "RN:R05447"^^xsd:string ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25795"@en . + bo:10485 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "regulator of sigma-O;BSU33222"@en , "Sigma-O factor regulatory protein rsoA"@en ; rdfs:label "RsoA"@en , "BSU33222"@en , "YvrHa"@en , "rsoA"@en ; @@ -89561,15 +89571,16 @@ bo:10485 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10485"@en . -bo:25795 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "chlorophenol 4-monooxygenase - reversible"@en ; - rdfs:label "C07101 + 2 C00004 + C00007 <=> C06600 + 2 C00003 + C01328 + C00698"@en , "cpd:C07101 <=> cpd:C07101"@en ; - sybio:accession "RN:R05447"^^xsd:string ; - sybio:catalyzingClass bo:21056 ; +bo:25883 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "NADP+ oxidoreductase(CoA-hydroxycinnamoylating)"@en , "C05608 + C00010 + C00006 <=> C00223 + C00005 + C00080"@en , "cpd:C00223 <=> cpd:C00223"@en , "4-Hydroxycinnamyl aldehyde"@en ; + sybio:accession "RN:R01615"^^xsd:string ; + sybio:catalyzedBy bo:19189 ; + sybio:catalyzingClass bo:25358 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25795"@en . + tawny:name "25883"@en . bo:10573 a sybio:Protein , owl:NamedIndividual , bo:1844 ; rdfs:comment "putative UV damage repair endonuclease;BSU37200"@en , "UV DNA damage endonuclease"@en ; @@ -89589,16 +89600,15 @@ bo:10573 a sybio:Protein , owl:NamedIndividual , bo:1844 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10573"@en . -bo:25883 a sybio:Reaction , owl:NamedIndividual ; +bo:25971 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; - rdfs:label "NADP+ oxidoreductase(CoA-hydroxycinnamoylating)"@en , "C05608 + C00010 + C00006 <=> C00223 + C00005 + C00080"@en , "cpd:C00223 <=> cpd:C00223"@en , "4-Hydroxycinnamyl aldehyde"@en ; - sybio:accession "RN:R01615"^^xsd:string ; - sybio:catalyzedBy bo:19189 ; - sybio:catalyzingClass bo:25358 ; + rdfs:label "NADP+ 17-oxidoreductase"@en , "cpd:C05141 <=> cpd:C05141"@en , "Estriol"@en , "C05141 + C00006 <=> C05300 + C00005 + C00080"@en ; + sybio:accession "RN:R04682"^^xsd:string ; + sybio:catalyzingClass bo:25972 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25883"@en . + tawny:name "25971"@en . bo:10661 a bo:273 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Phage PBSX transcriptional regulator;BSU12510"@en , "HTH-type transcriptional regulator xre;"@en ; @@ -89619,16 +89629,6 @@ bo:10661 a bo:273 , owl:NamedIndividual , sybio:Protein ; tawny:name "10661"@en ; owl:sameAs bo:6665 . -bo:25971 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "NADP+ 17-oxidoreductase"@en , "cpd:C05141 <=> cpd:C05141"@en , "Estriol"@en , "C05141 + C00006 <=> C05300 + C00005 + C00080"@en ; - sybio:accession "RN:R04682"^^xsd:string ; - sybio:catalyzingClass bo:25972 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25971"@en . - bo:17040 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "phospholipase C [EC:3.1.4.3]"@en ; rdfs:label "PLCC"@en ; @@ -89896,11 +89896,11 @@ bo:19548 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.17-RXN"^^xsd:string ; + owl:hasValue "GO:0003796"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003796"^^xsd:string ; + owl:hasValue "3.2.1.17-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -90353,6 +90353,25 @@ bo:30077 a owl:NamedIndividual , sybio:CDS ; "205.0"@en ; tawny:name "30077"@en . +bo:26587 a bo:1000 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "BSU28780;L-ribulose-5-phosphate 4-epimerase"@en , "derived protein;L-ribulose-5-phosphate 4-epimerase"@en ; + rdfs:label "AraD"@en , "araD"@en , "BSU28780"@en ; + sybio:AA "MLETLKKEVLAANLKLQEHQLVTFTWGNVSGIDREKERIVIKPSGVEYSDLTADDLVVLNLDGEVVEGSLKPSSDTPTHVYLYKAFPNIGGIVHTHSQWATSWAQSGRDIPPLGTTHADYFDSAIPCTREMYDEEIIHDYELNTGKVIAETFQHHNYEQVPGVLVNNHGPFCWGTDALNAIHNAVVLETVAEMAYHSIMLNKDVTPINTVLHEKHFYRKHGANAYYGQS"@en ; + sybio:accession "BSU28780"^^xsd:string , "937894"^^xsd:string , "P94525"^^xsd:string , "16079930"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32473 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "25684.79"^^xsd:string ; + sybio:pI "5.335609"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26589 , bo:26588 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26587"@en . + bo:11277 a owl:NamedIndividual , bo:325 , sybio:Protein ; rdfs:comment "BSU01190;ribosomal protein L2 (BL2)"@en , "50S ribosomal protein L2"@en ; rdfs:label "rplB"@en , "BSU01190"@en , "RplB"@en ; @@ -90374,25 +90393,6 @@ bo:11277 a owl:NamedIndividual , bo:325 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11277"@en . -bo:26587 a bo:1000 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "BSU28780;L-ribulose-5-phosphate 4-epimerase"@en , "derived protein;L-ribulose-5-phosphate 4-epimerase"@en ; - rdfs:label "AraD"@en , "araD"@en , "BSU28780"@en ; - sybio:AA "MLETLKKEVLAANLKLQEHQLVTFTWGNVSGIDREKERIVIKPSGVEYSDLTADDLVVLNLDGEVVEGSLKPSSDTPTHVYLYKAFPNIGGIVHTHSQWATSWAQSGRDIPPLGTTHADYFDSAIPCTREMYDEEIIHDYELNTGKVIAETFQHHNYEQVPGVLVNNHGPFCWGTDALNAIHNAVVLETVAEMAYHSIMLNKDVTPINTVLHEKHFYRKHGANAYYGQS"@en ; - sybio:accession "BSU28780"^^xsd:string , "937894"^^xsd:string , "P94525"^^xsd:string , "16079930"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32473 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "25684.79"^^xsd:string ; - sybio:pI "5.335609"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26589 , bo:26588 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26587"@en . - bo:30165 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24480"@en ; rdfs:label "BSU24480"@en , "yqhR"@en ; @@ -90418,25 +90418,6 @@ bo:30165 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "30165"@en . -bo:11365 a owl:NamedIndividual , bo:508 , sybio:Protein ; - rdfs:comment "BSU03610;cystine ABC transporter (substrate-binding lipoprotein);;"@en , "L-cystine-binding protein tcyA"@en ; - rdfs:label "YckK"@en , "TcyA"@en , "BSU03610"@en , "tcyA"@en ; - sybio:AA "MKKALLALFMVVSIAALAACGAGNDNQSKDNAKDGDLWASIKKKGVLTVGTEGTYEPFTYHDKDTDKLTGYDVEVITEVAKRLGLKVDFKETQWDSMFAGLNSKRFDVVANQVGKTDREDKYDFSDKYTTSRAVVVTKKDNNDIKSEADVKGKTSAQSLTSNYNKLATNAGAKVEGVEGMAQALQMIQQGRVDMTYNDKLAVLNYLKTSGNKNVKIAFETGEPQSTYFTFRKGSGEVVDQVNKALKEMKEDGTLSKISKKWFGEDVSK"@en ; - sybio:accession "P42199"^^xsd:string , "BSU03610"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30969 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "29513.015"^^xsd:string ; - sybio:pI "8.623695"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11365"@en . - bo:26675 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "chitosanase;BSU26890"@en , "Chitosanase;derived protein"@en ; rdfs:label "Csn"@en , "BSU26890"@en , "csn"@en ; @@ -90456,6 +90437,25 @@ bo:26675 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "26675"@en . +bo:11365 a owl:NamedIndividual , bo:508 , sybio:Protein ; + rdfs:comment "BSU03610;cystine ABC transporter (substrate-binding lipoprotein);;"@en , "L-cystine-binding protein tcyA"@en ; + rdfs:label "YckK"@en , "TcyA"@en , "BSU03610"@en , "tcyA"@en ; + sybio:AA "MKKALLALFMVVSIAALAACGAGNDNQSKDNAKDGDLWASIKKKGVLTVGTEGTYEPFTYHDKDTDKLTGYDVEVITEVAKRLGLKVDFKETQWDSMFAGLNSKRFDVVANQVGKTDREDKYDFSDKYTTSRAVVVTKKDNNDIKSEADVKGKTSAQSLTSNYNKLATNAGAKVEGVEGMAQALQMIQQGRVDMTYNDKLAVLNYLKTSGNKNVKIAFETGEPQSTYFTFRKGSGEVVDQVNKALKEMKEDGTLSKISKKWFGEDVSK"@en ; + sybio:accession "P42199"^^xsd:string , "BSU03610"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30969 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "29513.015"^^xsd:string ; + sybio:pI "8.623695"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11365"@en . + bo:6091 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "galKT_terminator"@en ; sybio:NA "CAAAAGCCTCAACCGCTAGGGTTGAGGCTTTTTTCGATTTTTA"^^xsd:string ; @@ -90491,26 +90491,6 @@ bo:30253 a owl:NamedIndividual , sybio:CDS ; "1.0"@en ; tawny:name "30253"@en . -bo:11453 a sybio:Protein , owl:NamedIndividual , bo:559 ; - rdfs:comment "transcriptional regulator (Lrp/AsnC family);BSU26720"@en , "Transcriptional regulator azlB"@en ; - rdfs:label "azlB"@en , "BSU26720"@en , "AzlB"@en , "YrdG"@en ; - sybio:AA "MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM"@en ; - sybio:accession "BSU26720"^^xsd:string , "O07920"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:31853 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "17463.56"^^xsd:string ; - sybio:pI "5.052559"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11453"@en ; - owl:sameAs bo:6805 . - bo:26763 a owl:NamedIndividual , sybio:Protein , bo:1765 ; rdfs:comment "imidazoleglycerol-phosphate dehydratase;BSU34900"@en , "Imidazoleglycerol-phosphate dehydratase;derived protein"@en ; rdfs:label "HisB"@en , "BSU34900"@en , "hisB"@en ; @@ -90531,6 +90511,26 @@ bo:26763 a owl:NamedIndividual , sybio:Protein , bo:1765 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26763"@en . +bo:11453 a sybio:Protein , owl:NamedIndividual , bo:559 ; + rdfs:comment "transcriptional regulator (Lrp/AsnC family);BSU26720"@en , "Transcriptional regulator azlB"@en ; + rdfs:label "azlB"@en , "BSU26720"@en , "AzlB"@en , "YrdG"@en ; + sybio:AA "MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM"@en ; + sybio:accession "BSU26720"^^xsd:string , "O07920"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:31853 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "17463.56"^^xsd:string ; + sybio:pI "5.052559"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11453"@en ; + owl:sameAs bo:6805 . + bo:30341 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU28590"@en ; rdfs:label "BSU28590"@en , "polX"@en , "yshC"@en ; @@ -90614,7 +90614,7 @@ bo:24042 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GTP cyclohydrolase II"@en , "GO:0003935"@en , "GTP-8-formylhydrolase"@en , "GTP 7 8-8 9-dihydrolase"@en , "guanosine triphosphate cyclohydrolase II"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.25"^^xsd:string ; + owl:hasValue "GTP-CYCLOHYDRO-II-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -90622,7 +90622,7 @@ bo:24042 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GTP-CYCLOHYDRO-II-RXN"^^xsd:string ; + owl:hasValue "3.5.4.25"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -90825,7 +90825,7 @@ bo:32849 a sybio:CDS , owl:NamedIndividual ; rdfs:label "peripheral membrane protein"@en , "extrinsic to membrane"@en , "GO:0019898"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030396"^^xsd:string ; + owl:hasValue "Peripheral_membrane_protein"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -90833,7 +90833,7 @@ bo:32849 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Peripheral_membrane_protein"^^xsd:string ; + owl:hasValue "GO:0030396"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -90845,19 +90845,19 @@ bo:32849 a sybio:CDS , owl:NamedIndividual ; rdfs:label "OPRTase"@en , "orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase"@en , "orotidylic pyrophosphorylase"@en , "orotidine phosphoribosyltransferase"@en , "orotidylate pyrophosphorylase"@en , "orotidylic phosphorylase"@en , "orotidine 5'-monophosphate pyrophosphorylase"@en , "orotate phosphoribosyl pyrophosphate transferase"@en , "orotate phosphoribosyltransferase"@en , "GO:0004588"@en , "orotidine-5'-phosphate pyrophosphorylase"@en , "orotidylic acid phosphorylase"@en , "orotic acid phosphoribosyltransferase"@en , "orotidylate phosphoribosyltransferase"@en , "orotidine monophosphate pyrophosphorylase"@en , "OPRT"@en , "orotidylic acid pyrophosphorylase"@en , "orotidine-5'-phosphate diphosphorylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004588"^^xsd:string ; + owl:hasValue "12534 \"orotate phosphoribosyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "OROPRIBTRANS-RXN"^^xsd:string ; + owl:hasValue "2.4.2.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.10"^^xsd:string ; + owl:hasValue "OROPRIBTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12534 \"orotate phosphoribosyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0004588"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -90895,7 +90895,7 @@ bo:32937 a sybio:CDS , owl:NamedIndividual ; rdfs:label "5-dehydroshikimic reductase"@en , "oxidoreductase"@en , "GO:0004764"@en , "5-oxidoreductase"@en , "dehydroshikimic reductase"@en , "DHS reductase"@en , "shikimate 5-dehydrogenase"@en , "5-dehydroshikimate reductase"@en , "shikimate oxidoreductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.25"^^xsd:string ; + owl:hasValue "GO:0004764"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -90903,7 +90903,7 @@ bo:32937 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004764"^^xsd:string ; + owl:hasValue "1.1.1.25"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -90915,7 +90915,7 @@ bo:32937 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0004852"@en , "URO-synthase"@en , "uroporphyrinogen-III synthase"@en , "uroporphyrinogen-III cosynthetase"@en , "uroporphyrinogen isomerase"@en , "hydroxymethylbilane hydro-lyase"@en , "porphobilinogenase"@en , "uroporphyrinogen-III cosynthase"@en , "uroporphyrinogen III cosynthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004852"^^xsd:string ; + owl:hasValue "UROGENIIISYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -90927,7 +90927,7 @@ bo:32937 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UROGENIIISYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004852"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -91190,11 +91190,11 @@ bo:14878 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "PTS-SOR-EIIB"@en , "SORB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008982"^^xsd:string ; + owl:hasValue "COG3444"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3444"^^xsd:string ; + owl:hasValue "0008982"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -91435,10 +91435,6 @@ bo:12421 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate.;"@en ; rdfs:label "SAICARs"@en , "SAICAR synthetase"@en , "phosphoribosylaminoimidazole-succinocarboxamide synthetase"@en , "5-aminoimidazole-4-N-succinocarboxamide ribonucleotide synthetase"@en , "ligase"@en , "GO:0004639"@en , "phosphoribosylaminoimidazole-succinocarboxamide synthase"@en , "phosphoribosylaminoimidazolesuccinocarboxamide synthase"@en , "PurC"@en , "ribonucleotide synthetase"@en , "SAICAR synthase"@en , "phosphoribosylaminoimidazolesuccinocarboxamide synthetase"@en , "synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004639"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "13398 \"phosphoribosylaminoimidazolesuccinocarboxamide synthase activity\""^^xsd:string ; owl:onProperty sybio:accession @@ -91451,6 +91447,10 @@ bo:12421 a sybio:Compound , owl:NamedIndividual ; owl:hasValue "SAICARSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0004639"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -91459,10 +91459,6 @@ bo:12421 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp)."@en ; rdfs:label "aspartyl-transfer RNA synthetase"@en , "GO:0004815"@en , "L-aspartate:tRNAAsp ligase"@en , "aspartate-tRNA ligase"@en , "aspartyl-transfer ribonucleic acid synthetase"@en , "aspartic acid translase"@en , "aspartyl ribonucleic synthetase"@en , "aspartyl ribonucleate synthetase"@en , "aspartyl-tRNA synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPARTATE--TRNA-LIGASE-RXN"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "6.1.1.12"^^xsd:string ; owl:onProperty sybio:accession @@ -91475,6 +91471,10 @@ bo:12421 a sybio:Compound , owl:NamedIndividual ; owl:hasValue "15081 \"aspartate-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "ASPARTATE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -91510,11 +91510,11 @@ bo:15883 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E2.6.1.82"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033094"^^xsd:string ; + owl:hasValue "COG4992"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4992"^^xsd:string ; + owl:hasValue "0033094"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -91949,87 +91949,77 @@ bo:16588 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08247"@en ; tawny:name "16588"@en . -bo:16676 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15]"@en ; - rdfs:label "TRYP"@en ; - sybio:accession "0051920"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16677 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186"@en ; - tawny:name "16676"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins."@en ; rdfs:label "proline synthesis"@en , "proline biosynthetic process"@en , "proline formation"@en , "proline biosynthesis"@en , "proline anabolism"@en , "GO:0006561"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487962 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "70665 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531438 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "449173 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507936 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "547890 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526640 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "599765 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006561"^^xsd:string ; + owl:hasValue "595543 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597426 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "581928 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600672 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "558077 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449173 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "470286 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558077 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "602580 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536811 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "PWY-3341"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595543 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "GO:0006561"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552469 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "487962 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599765 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "536811 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581928 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "552469 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592820 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "542570 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542570 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "531438 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-3341"^^xsd:string ; + owl:hasValue "600672 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -92037,36 +92027,46 @@ bo:16676 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568725 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "517808 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517808 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "PROSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602580 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "526640 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470286 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "597426 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70665 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "507936 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547890 \"Proline synthesis\""^^xsd:string ; + owl:hasValue "592820 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROSYN-PWY"^^xsd:string ; + owl:hasValue "568725 \"Proline synthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16676 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15]"@en ; + rdfs:label "TRYP"@en ; + sybio:accession "0051920"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16677 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186"@en ; + tawny:name "16676"@en . + bo:28259 a sybio:Shim , owl:NamedIndividual ; rdfs:label "epsA_RBS_upstream"@en ; sybio:NA "AGAAAGGGGCGCGGGAAGCCAGCCGCGGGA"^^xsd:string ; @@ -92972,6 +92972,14 @@ bo:667 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "667"@en . +bo:5991 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "spoIIR"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30838 ; + sybio:operonGenes "spoIIR"@en ; + tawny:name "5991"@en . + bo:17644 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "E-phenylitaconyl-CoA hydratase [EC:4.2.1.-]"@en ; rdfs:label "BBSH"@en ; @@ -92985,14 +92993,6 @@ bo:17644 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07546"@en ; tawny:name "17644"@en . -bo:5991 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "spoIIR"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30838 ; - sybio:operonGenes "spoIIR"@en ; - tawny:name "5991"@en . - bo:29227 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU01720"@en ; rdfs:label "ybbK"@en , "BSU01720"@en ; @@ -93164,15 +93164,15 @@ bo:3094 a sybio:SigDPromoter , owl:NamedIndividual , sybi rdfs:label "GO:0047761"@en , "butyrate kinase"@en , "ATP:butanoate 1-phosphotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BUTYRATE-KINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.2.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047761"^^xsd:string ; + owl:hasValue "BUTYRATE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.7"^^xsd:string ; + owl:hasValue "GO:0047761"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -93258,11 +93258,11 @@ bo:21045 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "DNA dependent ATPase"@en , "adenosinetriphosphatase"@en , "GO:0008094"@en , "DNA-dependent ATPase"@en , "DNA-dependent adenosinetriphosphatase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004011"^^xsd:string ; + owl:hasValue "GO:0008094"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008094"^^xsd:string ; + owl:hasValue "GO:0004011"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -93781,15 +93781,15 @@ bo:18348 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "protease"@en , "peptidase"@en , "peptide hydrolase"@en , "hydrolase acting on peptide bonds"@en , "proteinase"@en , "GO:0008233"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.-.-"^^xsd:string ; + owl:hasValue "1687 \"peptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1687 \"peptidase activity\""^^xsd:string ; + owl:hasValue "GO:0008233"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008233"^^xsd:string ; + owl:hasValue "3.4.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -94334,6 +94334,17 @@ bo:31950 a owl:NamedIndividual , sybio:CDS ; "7.0"@en ; tawny:name "31950"@en . +bo:25387 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C05108 + 3 C00005 + 3 C00080 + 3 C00007 <=> C15808 + 3 C00006 + 4C00001"@en , "cpd:C05108 <=> cpd:C05108"@en ; + sybio:accession "RN:R07509"^^xsd:string ; + sybio:catalyzedBy bo:18568 ; + sybio:catalyzingClass bo:25388 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25387"@en . + bo:10077 a bo:364 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU05310;putative efflux transporter"@en , "Uncharacterized MFS-type transporter ydeR"@en ; rdfs:label "YdeR"@en , "BSU05310"@en , "ydeR"@en ; @@ -94352,16 +94363,16 @@ bo:10077 a bo:364 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10077"@en . -bo:25387 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C05108 + 3 C00005 + 3 C00080 + 3 C00007 <=> C15808 + 3 C00006 + 4C00001"@en , "cpd:C05108 <=> cpd:C05108"@en ; - sybio:accession "RN:R07509"^^xsd:string ; - sybio:catalyzedBy bo:18568 ; - sybio:catalyzingClass bo:25388 ; +bo:25475 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "vinyl chloride reductive dehalogenase - reversible"@en ; + rdfs:label "C06793 + 2 C00080 <=> C06547 + C01327"@en , "cpd:C06793 <=> cpd:C06793"@en ; + sybio:accession "RN:R05498"^^xsd:string ; + sybio:catalyzedBy bo:18586 ; + sybio:catalyzingClass bo:22581 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25387"@en . + tawny:name "25475"@en . bo:10165 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yoeD"@en , "putative excisionase;BSU18400"@en ; @@ -94381,16 +94392,16 @@ bo:10165 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10165"@en . -bo:25475 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "vinyl chloride reductive dehalogenase - reversible"@en ; - rdfs:label "C06793 + 2 C00080 <=> C06547 + C01327"@en , "cpd:C06793 <=> cpd:C06793"@en ; - sybio:accession "RN:R05498"^^xsd:string ; - sybio:catalyzedBy bo:18586 ; - sybio:catalyzingClass bo:22581 ; +bo:25563 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "G00011 + 4 C00001 <=> G00012 + 4 C00159"@en , "gl:G00011 <=> gl:G00011"@en ; + sybio:accession "RN:R05982"^^xsd:string ; + sybio:catalyzedBy bo:18886 ; + sybio:catalyzingClass bo:25564 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25475"@en . + tawny:name "25563"@en . bo:10253 a bo:1317 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Hemolysin-3 homolog"@en , "BSU21790;putative membrane hydrolase;"@en ; @@ -94409,24 +94420,13 @@ bo:10253 a bo:1317 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10253"@en . -bo:25563 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "G00011 + 4 C00001 <=> G00012 + 4 C00159"@en , "gl:G00011 <=> gl:G00011"@en ; - sybio:accession "RN:R05982"^^xsd:string ; - sybio:catalyzedBy bo:18886 ; - sybio:catalyzingClass bo:25564 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25563"@en . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose."@en ; rdfs:label "uridylyl removing enzyme"@en , "uridyltransferase"@en , "UDPglucose-hexose-1-phosphate uridylyltransferase"@en , "hexose-1-phosphate uridylyltransferase"@en , "Gal-1-P uridylyltransferase"@en , "galactose-1-phosphate uridylyltransferase"@en , "UDPglucose:alpha-D-galactose-1-phosphate uridylyltransferase"@en , "hexose 1-phosphate uridyltransferase"@en , "GO:0008108"@en , "uridyl transferase"@en , "UDP-glucose:hexose-1-phosphate uridylyltransferase"@en , "UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase"@en , "UDP-glucose-hexose-1-phosphate uridylyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "22869 \"UDP-glucose:hexose-1-phosphate uridylyltransferase activity\""^^xsd:string ; + owl:hasValue "GALACTURIDYLYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -94438,7 +94438,7 @@ bo:25563 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GALACTURIDYLYLTRANS-RXN"^^xsd:string ; + owl:hasValue "22869 \"UDP-glucose:hexose-1-phosphate uridylyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -94651,34 +94651,16 @@ bo:4201 a sybio:PositivelyRegulatedOperator , sybio:Operator owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.29-RXN"^^xsd:string ; + owl:hasValue "GO:0015412"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015412"^^xsd:string ; + owl:hasValue "3.6.3.29-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:11082 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Membrane-bound protein lytA"@en , "membrane bound lipoprotein;BSU35640;"@en ; - rdfs:label "BSU35640"@en , "LppX"@en , "LytA"@en , "lytA"@en ; - sybio:AA "MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN"@en ; - sybio:accession "BSU35640"^^xsd:string , "Q02112"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32111 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.6 : Protein secretion"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "11228.025"^^xsd:string ; - sybio:pI "4.263115"^^xsd:string ; - sybio:productType "lp : lipoprotein"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11082"@en . - bo:26392 a owl:NamedIndividual , sybio:Protein , bo:302 , bo:401 ; rdfs:comment "BSU05420;two-component response regulator [YdfH];"@en , "Transcriptional regulatory protein ydfI;derived protein"@en ; rdfs:label "BSU05420"@en , "ydfI"@en , "YdfI"@en ; @@ -94702,6 +94684,24 @@ bo:26392 a owl:NamedIndividual , sybio:Protein , bo:302 , tawny:name "26392"@en ; owl:sameAs bo:6616 . +bo:11082 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Membrane-bound protein lytA"@en , "membrane bound lipoprotein;BSU35640;"@en ; + rdfs:label "BSU35640"@en , "LppX"@en , "LytA"@en , "lytA"@en ; + sybio:AA "MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN"@en ; + sybio:accession "BSU35640"^^xsd:string , "Q02112"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32111 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.6 : Protein secretion"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "11228.025"^^xsd:string ; + sybio:pI "4.263115"^^xsd:string ; + sybio:productType "lp : lipoprotein"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11082"@en . + bo:7399 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Amylase;Alpha-amylase"@en ; rdfs:label "amy"@en ; @@ -94711,6 +94711,26 @@ bo:7399 a sybio:Protein , owl:NamedIndividual ; sybio:hasFunction , , , , , , ; tawny:name "7399"@en . +bo:26480 a owl:NamedIndividual , sybio:Protein , bo:1389 ; + rdfs:comment "riboflavin synthase (alpha subunit);BSU23270"@en , "Riboflavin synthase alpha chain;derived protein"@en ; + rdfs:label "RibB"@en , "RibE"@en , "ribE"@en , "BSU23270"@en ; + sybio:AA "MFTGIIEETGTIESMKKAGHAMALTIKCSKILEDVHLGDSIAVNGICLTVTDFTKNQFTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNAVYYDLKMDPSLTKTLVLKGSITVDGVSLTIFGLTEDTVTISLIPHTISETIFSEKTIGSKVNIECDMIGKYMYRFLHKANENKTQQTITKAFLSENGF"@en ; + sybio:accession "938947"^^xsd:string , "P16440"^^xsd:string , "BSU23270"^^xsd:string , "16079384"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28852 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:interactsWith bo:26478 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "23480.02"^^xsd:string ; + sybio:pI "5.883766"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26481 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26480"@en . + bo:11170 a bo:1302 , bo:247 , sybio:Protein , owl:NamedIndividual , bo:578 ; rdfs:comment "DNA-binding protein HU 1;Non-specific DNA-binding protein HBsu;ATP-dependent RNA helicase dbpA"@en , "ATP-dependent RNA helicase;BSU39110;BSU22790;non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component"@en ; rdfs:label "dbpA"@en , "YxiN"@en , "hbs"@en , "DeaD"@en , "hupA"@en , "BSU39110"@en , "DbpA"@en , "BSU22790"@en , "Hbs"@en ; @@ -94732,26 +94752,6 @@ bo:11170 a bo:1302 , bo:247 , sybio:Protein , owl:NamedInd tawny:name "11170"@en ; owl:sameAs bo:2585 . -bo:26480 a owl:NamedIndividual , sybio:Protein , bo:1389 ; - rdfs:comment "riboflavin synthase (alpha subunit);BSU23270"@en , "Riboflavin synthase alpha chain;derived protein"@en ; - rdfs:label "RibB"@en , "RibE"@en , "ribE"@en , "BSU23270"@en ; - sybio:AA "MFTGIIEETGTIESMKKAGHAMALTIKCSKILEDVHLGDSIAVNGICLTVTDFTKNQFTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNAVYYDLKMDPSLTKTLVLKGSITVDGVSLTIFGLTEDTVTISLIPHTISETIFSEKTIGSKVNIECDMIGKYMYRFLHKANENKTQQTITKAFLSENGF"@en ; - sybio:accession "938947"^^xsd:string , "P16440"^^xsd:string , "BSU23270"^^xsd:string , "16079384"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28852 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:interactsWith bo:26478 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "23480.02"^^xsd:string ; - sybio:pI "5.883766"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26481 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26480"@en . - bo:31649 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32620"@en ; rdfs:label "BSU32620"@en , "yurQ"@en ; @@ -95019,7 +95019,7 @@ bo:10304 a owl:NamedIndividual , sybio:Protein , bo:1324 ; rdfs:label "GO:0016153"@en , "imidazolonepropionate hydrolase"@en , "urocanate hydratase"@en , "hydro-lyase"@en , "urocanase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "23891 \"urocanate hydratase activity\""^^xsd:string ; + owl:hasValue "4.2.1.49"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -95031,7 +95031,7 @@ bo:10304 a owl:NamedIndividual , sybio:Protein , bo:1324 ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.49"^^xsd:string ; + owl:hasValue "23891 \"urocanate hydratase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -95092,6 +95092,17 @@ bo:32478 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "32478"@en . +bo:13678 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C8H12N2O2"@en ; + rdfs:label "C8H12N2O2"@en , "Pyridoxamine"@en , "PM"@en ; + sybio:accession "16410"^^xsd:string , "85-87-0"^^xsd:string , "B00123"^^xsd:string , "3816"^^xsd:string , "C00534"^^xsd:string ; + sybio:consumedBy bo:24556 , bo:24553 , bo:24562 , bo:24560 , bo:24543 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24556 , bo:24563 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00534"@en ; + tawny:name "13678"@en . + bo:28988 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU30650"@en ; rdfs:label "ytkB"@en , "dps"@en , "BSU30650"@en ; @@ -95119,17 +95130,6 @@ bo:28988 a sybio:CDS , owl:NamedIndividual ; "80.0"@en ; tawny:name "28988"@en . -bo:13678 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C8H12N2O2"@en ; - rdfs:label "C8H12N2O2"@en , "Pyridoxamine"@en , "PM"@en ; - sybio:accession "16410"^^xsd:string , "85-87-0"^^xsd:string , "B00123"^^xsd:string , "3816"^^xsd:string , "C00534"^^xsd:string ; - sybio:consumedBy bo:24556 , bo:24553 , bo:24562 , bo:24560 , bo:24543 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24556 , bo:24563 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00534"@en ; - tawny:name "13678"@en . - bo:32566 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU37120"@en , "fructose-bisphosphate aldolase (EC:4.1.2.13);"@en ; rdfs:label "BSU37120"@en , "fba"@en , "tsr"@en , "fbaA"@en ; @@ -95665,7 +95665,7 @@ bo:13817 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glutamine synthetase"@en , "glutamylhydroxamic synthetase"@en , "GO:0004356"@en , "glutamate-ammonia ligase"@en , "L-glutamine synthetase"@en , "L-glutamate:ammonia ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004356"^^xsd:string ; + owl:hasValue "6.3.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -95673,7 +95673,7 @@ bo:13817 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.1.2"^^xsd:string ; + owl:hasValue "GO:0004356"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -95958,11 +95958,11 @@ bo:14734 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "KDGA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0329"^^xsd:string ; + owl:hasValue "0043725"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043725"^^xsd:string ; + owl:hasValue "COG0329"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -96130,19 +96130,19 @@ bo:1190 a owl:Class ; rdfs:label "enoyl-[acyl-carrier protein] reductase"@en , "reductase enoyl-acyl carrier protein"@en , "GO:0004319"@en , "NADPH 2-enoyl Co A reductase"@en , "enoyl acyl-carrier-protein reductase"@en , "enoyl-ACP reductase"@en , "enoyl-acyl-carrier-protein reductase"@en , "enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific)"@en , "acyl-acyl-carrier-protein:NADP+ oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004319"^^xsd:string ; + owl:hasValue "ENOYL-ACP-REDUCT-NADPH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.10"^^xsd:string ; + owl:hasValue "76151 \"enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ENOYL-ACP-REDUCT-NADPH-RXN"^^xsd:string ; + owl:hasValue "GO:0004319"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "76151 \"enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity\""^^xsd:string ; + owl:hasValue "1.3.1.10"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -96631,18 +96631,18 @@ bo:21913 a owl:NamedIndividual , sybio:Reaction ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate."@en ; - rdfs:label "phosphatidylglycerol phosphatase"@en , "GO:0008962"@en , "phosphatidylglycerophosphatase"@en , "phosphatidylglycerophosphate phosphohydrolase"@en , "PGP phosphatase"@en , "phosphatidylglycerol phosphate phosphatase"@en ; + rdfs:label "GO:0008962"@en , "phosphatidylglycerol phosphatase"@en , "phosphatidylglycerophosphatase"@en , "phosphatidylglycerophosphate phosphohydrolase"@en , "PGP phosphatase"@en , "phosphatidylglycerol phosphate phosphatase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.27"^^xsd:string ; + owl:hasValue "GO:0008962"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PGPPHOSPHA-RXN"^^xsd:string ; + owl:hasValue "3.1.3.27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008962"^^xsd:string ; + owl:hasValue "PGPPHOSPHA-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -96663,11 +96663,11 @@ bo:15526 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.1.1.29"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1052"^^xsd:string ; + owl:hasValue "0008465"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008465"^^xsd:string ; + owl:hasValue "COG1052"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -96703,16 +96703,6 @@ bo:15702 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01041"@en ; tawny:name "15702"@en . -bo:16356 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "arylalkylamine N-acetyltransferase [EC:2.3.1.87]"@en ; - rdfs:label "E2.3.1.87"@en , "AANAT"@en ; - sybio:accession "0004059"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16355 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00669"@en ; - tawny:name "16356"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate."@en ; @@ -96725,18 +96715,15 @@ bo:16356 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16444 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "coumermycin A biosynthesis protein CouL"@en ; - rdfs:label "COUL"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9F8U8"^^xsd:string ; - owl:onProperty sybio:accession - ] ; +bo:16356 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "arylalkylamine N-acetyltransferase [EC:2.3.1.87]"@en ; + rdfs:label "E2.3.1.87"@en , "AANAT"@en ; + sybio:accession "0004059"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16355 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12725"@en ; - tawny:name "16444"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00669"@en ; + tawny:name "16356"@en . bo:4791 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yhxA-glpP"@en ; @@ -96756,6 +96743,19 @@ bo:28027 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28026 ; tawny:name "28027"@en . +bo:16444 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "coumermycin A biosynthesis protein CouL"@en ; + rdfs:label "COUL"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q9F8U8"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12725"@en ; + tawny:name "16444"@en . + bo:16532 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "peptide synthetase PhsA"@en ; rdfs:label "PHSA"@en , "K12911"@en ; @@ -97019,27 +97019,27 @@ bo:17273 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357"@en ; tawny:name "17273"@en . -bo:384 a owl:Class ; - rdfs:label "COG2103"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:1116 a owl:Class ; + rdfs:label "COG1564"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2103"^^xsd:string ; + owl:hasValue "COG1564"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "384"@en . + tawny:name "1116"@en . -bo:1116 a owl:Class ; - rdfs:label "COG1564"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:384 a owl:Class ; + rdfs:label "COG2103"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1564"^^xsd:string ; + owl:hasValue "COG2103"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1116"@en . + tawny:name "384"@en . bo:10982 a sybio:Protein , bo:372 , owl:NamedIndividual ; rdfs:comment "putative vitamin B12 permease;BSU33170"@en , "Uncharacterized ABC transporter permease protein yvrB"@en ; @@ -97072,28 +97072,17 @@ bo:17361 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573"@en ; tawny:name "17361"@en . -bo:472 a owl:Class ; - rdfs:label "COG2113"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2113"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "472"@en . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate."@en ; rdfs:label "diaminopimelate epimerase"@en , "GO:0008837"@en , "LL-2 6-diaminoheptanedioate 2-epimerase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008837"^^xsd:string ; + owl:hasValue "DIAMINOPIMEPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIAMINOPIMEPIM-RXN"^^xsd:string ; + owl:hasValue "GO:0008837"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -97114,16 +97103,16 @@ bo:1204 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1204"@en . -bo:560 a owl:Class ; - rdfs:label "COG0550"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; +bo:472 a owl:Class ; + rdfs:label "COG2113"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0550"^^xsd:string ; + owl:hasValue "COG2113"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "560"@en . + tawny:name "472"@en . bo:29032 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU31490"@en ; @@ -97158,11 +97147,11 @@ bo:29032 a sybio:CDS , owl:NamedIndividual ; rdfs:label "maltose transacetylase"@en , "maltose O-acetyltransferase"@en , "acetyl-CoA:maltose O-acetyltransferase"@en , "GO:0008925"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008925"^^xsd:string ; + owl:hasValue "2.3.1.79"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.79"^^xsd:string ; + owl:hasValue "GO:0008925"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -97172,17 +97161,16 @@ bo:29032 a sybio:CDS , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23395 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "4.2.1.45"@en ; - rdfs:subClassOf sybio:EC ; +bo:560 a owl:Class ; + rdfs:label "COG0550"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.45"^^xsd:string ; + owl:hasValue "COG0550"^^xsd:string ; owl:onProperty sybio:accession ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "23395"@en . + tawny:name "560"@en . bo:29120 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU11050"@en ; @@ -97199,6 +97187,18 @@ bo:29120 a sybio:CDS , owl:NamedIndividual ; "54.0"@en ; tawny:name "29120"@en . +bo:23395 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "4.2.1.45"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "4.2.1.45"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "23395"@en . + bo:23483 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "see R02758 (2-acyl type reaction) - irreversible"@en ; rdfs:label "ATP"@en , "acylglycerol 3-phosphotransferase"@en , "cpd:C01885 => cpd:C01885"@en , "C00002 + C01885 <=> C00008 + C00681"@en ; @@ -97573,7 +97573,7 @@ bo:435 a owl:Class ; rdfs:label "UDP alpha-glucosyltransferase"@en , "GO:0047265"@en , "alpha-D-glucosyltransferase"@en , "uridine alpha-glucosyltransferase"@en , "poly(glycerol-phosphate) alpha-glucosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047265"^^xsd:string ; + owl:hasValue "2.4.1.52"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -97581,7 +97581,7 @@ bo:435 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.52"^^xsd:string ; + owl:hasValue "GO:0047265"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -97653,11 +97653,11 @@ bo:611 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.29"^^xsd:string ; + owl:hasValue "4.1.2.29-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.29-RXN"^^xsd:string ; + owl:hasValue "4.1.2.29"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -97794,17 +97794,6 @@ bo:30486 a sybio:KinaseEncodingCDS , sybio:CDS , owl:NamedInd "82.0"@en ; tawny:name "30486"@en . -bo:11686 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00630"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00630"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11686"@en . - bo:26996 a sybio:Protein , owl:NamedIndividual , bo:401 ; rdfs:comment "response regulator;BSU24220"@en , "Sporulation protein;Stage 0 sporulation protein A;derived protein"@en ; rdfs:label "spo0A"@en , "Spo0C"@en , "BSU24220"@en , "SpoIIL"@en , "Spo0A"@en , "Spo0G"@en ; @@ -97828,6 +97817,17 @@ bo:26996 a sybio:Protein , owl:NamedIndividual , bo:401 ; tawny:name "26996"@en ; owl:sameAs bo:6825 . +bo:11686 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00630"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00630"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11686"@en . + bo:18065 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "adenosylcobinamide kinase / adenosylcobinamide-phosphateguanylyltransferase [EC:2.7.1.156 2.7.7.62]"@en ; rdfs:label "COBP"@en , "COBU"@en ; @@ -98075,7 +98075,7 @@ bo:10908 a bo:385 , owl:NamedIndividual , sybio:Protein ; rdfs:label "transglycosylase"@en , "GO:0016757"@en , "transferase activity, transferring glycosyl groups"@en , "transglycosidase"@en , "glycosyltransferase"@en , "transferase activity transferring other glycosyl groups"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.-.-"^^xsd:string ; + owl:hasValue "GO:0016932"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -98083,7 +98083,7 @@ bo:10908 a bo:385 , owl:NamedIndividual , sybio:Protein ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016932"^^xsd:string ; + owl:hasValue "2.4.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -98254,6 +98254,17 @@ bo:30449 a sybio:CDS , owl:NamedIndividual ; "14.0"@en ; tawny:name "30449"@en . +bo:11649 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00500"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00500"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11649"@en . + bo:26959 a owl:NamedIndividual , bo:646 , sybio:Protein ; rdfs:comment "Probable mannose-6-phosphate isomerase gmuF;derived protein"@en , "BSU05870;phosphohexomutase; cupin family"@en ; rdfs:label "BSU05870"@en , "gmuF"@en , "YdhS"@en , "GmuF"@en ; @@ -98273,17 +98284,6 @@ bo:26959 a owl:NamedIndividual , bo:646 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26959"@en . -bo:11649 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00500"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00500"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11649"@en . - bo:18028 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "formylmethanofuran dehydrogenase subunit E [EC:1.2.99.5]"@en ; rdfs:label "FMDE"@en , "E1.2.99.5E"@en ; @@ -98706,7 +98706,7 @@ bo:19033 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "KDTA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT30"^^xsd:string ; + owl:hasValue "0016740"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -98714,7 +98714,7 @@ bo:19033 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016740"^^xsd:string ; + owl:hasValue "GT30"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -99204,16 +99204,6 @@ bo:31329 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "31329"@en . -bo:27839 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "cydA_RBS"@en ; - sybio:NA "CCGGAAATGGAGGAGAAAGC"^^xsd:string ; - sybio:begin "3979217"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3979198"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28823 ; - tawny:name "27839"@en . - bo:12529 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C6H14N2O3"@en ; rdfs:label "N6-Hydroxy-L-lysine"@en , "C6H14N2O3"@en ; @@ -99225,6 +99215,16 @@ bo:12529 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01028"@en ; tawny:name "12529"@en . +bo:27839 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "cydA_RBS"@en ; + sybio:NA "CCGGAAATGGAGGAGAAAGC"^^xsd:string ; + sybio:begin "3979217"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3979198"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28823 ; + tawny:name "27839"@en . + bo:7255 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Mob protein"@en ; rdfs:label "mob60"@en ; @@ -99601,15 +99601,15 @@ bo:13534 a owl:NamedIndividual , sybio:Compound ; rdfs:label "L-aspartate-beta-semialdehyde dehydrogenase"@en , "L-aspartate-beta-semialdehyde:NADP oxidoreductase"@en , "aspartate-semialdehyde dehydrogenase"@en , "GO:0004073"@en , "aspartic beta-semialdehyde dehydrogenase"@en , "L-aspartate-4-semialdehyde:NADP+ oxidoreductase"@en , "aspartate semialdehyde dehydrogenase"@en , "ASA dehydrogenase"@en , "aspartic semialdehyde dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.11"^^xsd:string ; + owl:hasValue "GO:0004073"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.2.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004073"^^xsd:string ; + owl:hasValue "ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -100170,11 +100170,11 @@ bo:2498 a bo:1873 , sybio:Protein , owl:NamedIndividual ; rdfs:label "cysteine synthase"@en , "cysteine synthetase"@en , "O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase"@en , "O-acetylserine"@en , "3-O-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase"@en , "acetate-lyase"@en , "acetylserine sulfhydrylase"@en , "GO:0004124"@en , "O-acetyl-L-serine sulfohydrolase"@en , "O-acetylserine sulfhydrylase"@en , "O-acetyl-L-serine sulfhydrylase"@en , "OAS sulfhydrylase"@en , "O-acetylserine A"@en , "O3-acetyl-L-serine acetate-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004124"^^xsd:string ; + owl:hasValue "2.5.1.47"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.47"^^xsd:string ; + owl:hasValue "GO:0004124"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -100212,30 +100212,30 @@ bo:15192 a sybio:KOPR , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O."@en ; - rdfs:label "2-octenoyl coenzyme A hydrase"@en , "short chain enoyl coenzyme A hydratase"@en , "beta-hydroxyacid dehydrase"@en , "enoyl hydrase"@en , "trans-2-enoyl-CoA hydratase"@en , "short-chain enoyl-CoA hydratase"@en , "beta-hydroxyacyl-CoA dehydrase"@en , "hydro-lyase"@en , "crotonyl hydrase"@en , "ECH"@en , "2-enoyl-CoA hydratase"@en , "enoyl coenzyme A hydratase"@en , "D-3-hydroxyacyl-CoA dehydratase"@en , "acyl coenzyme A hydrase"@en , "GO:0004300"@en , "hydratase enoyl coenzyme A"@en , "enoyl-CoA hydratase"@en , "enoyl coenzyme A hydrase"@en , "unsaturated acyl-CoA hydratase"@en , "enol-CoA hydratase"@en ; + rdfs:label "2-octenoyl coenzyme A hydrase"@en , "short chain enoyl coenzyme A hydratase"@en , "beta-hydroxyacid dehydrase"@en , "enoyl hydrase"@en , "short-chain enoyl-CoA hydratase"@en , "beta-hydroxyacyl-CoA dehydrase"@en , "hydro-lyase"@en , "crotonyl hydrase"@en , "ECH"@en , "2-enoyl-CoA hydratase"@en , "trans-2-enoyl-CoA hydratase"@en , "enoyl coenzyme A hydratase"@en , "D-3-hydroxyacyl-CoA dehydratase"@en , "acyl coenzyme A hydrase"@en , "GO:0004300"@en , "hydratase enoyl coenzyme A"@en , "enoyl-CoA hydratase"@en , "enoyl coenzyme A hydrase"@en , "unsaturated acyl-CoA hydratase"@en , "enol-CoA hydratase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10287 \"enoyl-CoA hydratase activity\""^^xsd:string ; + owl:hasValue "GO:0004300"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016510"^^xsd:string ; + owl:hasValue "ENOYL-COA-HYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ENOYL-COA-HYDRAT-RXN"^^xsd:string ; + owl:hasValue "GO:0016510"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0014"^^xsd:string ; + owl:hasValue "10287 \"enoyl-CoA hydratase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004300"^^xsd:string ; + owl:hasValue "4.2.1.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.17"^^xsd:string ; + owl:hasValue "e0014"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -100410,11 +100410,11 @@ bo:17965 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E1.8.98.1B"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2048"^^xsd:string ; + owl:hasValue "0051912"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0051912"^^xsd:string ; + owl:hasValue "COG2048"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -101010,15 +101010,15 @@ bo:3554 a owl:NamedIndividual , sybio:Operator , sybio:Ne rdfs:label "aminoexotripeptidase"@en , "GO:0045148"@en , "tripeptide aminopeptidase"@en , "lymphopeptidase"@en , "imidoendopeptidase"@en , "peptidase T"@en , "peptidase B"@en , "alanine-phenylalanine-proline arylamidase"@en , "aminotripeptidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.11.4"^^xsd:string ; + owl:hasValue "GO:0045148"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.11.4-RXN"^^xsd:string ; + owl:hasValue "3.4.11.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045148"^^xsd:string ; + owl:hasValue "3.4.11.4-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -101043,11 +101043,11 @@ bo:16072 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "HPAG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0179"^^xsd:string ; + owl:hasValue "0018800"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018800"^^xsd:string ; + owl:hasValue "COG0179"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -101155,11 +101155,11 @@ bo:15118 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E2.3.1.16"@en , "FADA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003988"^^xsd:string ; + owl:hasValue "COG0183"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0183"^^xsd:string ; + owl:hasValue "0003988"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -101463,6 +101463,16 @@ bo:16123 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12732"@en ; tawny:name "16123"@en . +bo:25796 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label "GDP-mannose"@en , "glycolipid 1,2-alpha-D-mannosyltransferase"@en , " => "@en , "G00005 + G10614 <=> G10526 + G10620"@en ; + sybio:accession "RN:R06127"^^xsd:string ; + sybio:catalyzingClass bo:25794 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25796"@en . + bo:10486 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Membrane-bound negative regulator yvrL"@en , "BSU33250;putative integral inner membrane protein;"@en ; rdfs:label "YvrL"@en , "yvrL"@en , "BSU33250"@en ; @@ -101479,15 +101489,15 @@ bo:10486 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10486"@en . -bo:25796 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label "GDP-mannose"@en , "glycolipid 1,2-alpha-D-mannosyltransferase"@en , " => "@en , "G00005 + G10614 <=> G10526 + G10620"@en ; - sybio:accession "RN:R06127"^^xsd:string ; - sybio:catalyzingClass bo:25794 ; +bo:25884 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C05189 + C00006 + C00001 <=> C06163 + C00005 + C00007"@en , "oxygen oxidoreductase(14-hydroxylating)"@en , "(S)-cis-N-methylstylopine,NADPH"@en , "cpd:C06163 <=> cpd:C06163"@en ; + sybio:accession "RN:R04700"^^xsd:string ; + sybio:catalyzingClass bo:25885 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25796"@en . + tawny:name "25884"@en . bo:10574 a bo:1390 , bo:1318 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein ywjB"@en , "BSU37220;putative oxidoreductase"@en ; @@ -101507,15 +101517,17 @@ bo:10574 a bo:1390 , bo:1318 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "10574"@en . -bo:25884 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C05189 + C00006 + C00001 <=> C06163 + C00005 + C00007"@en , "oxygen oxidoreductase(14-hydroxylating)"@en , "(S)-cis-N-methylstylopine,NADPH"@en , "cpd:C06163 <=> cpd:C06163"@en ; - sybio:accession "RN:R04700"^^xsd:string ; - sybio:catalyzingClass bo:25885 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25884"@en . +bo:25972 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.1.1.62"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.62"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25972"@en . bo:10662 a bo:364 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein yxaJ"@en , "BSU39950;putative integral inner membrane protein"@en ; @@ -101534,18 +101546,6 @@ bo:10662 a bo:364 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10662"@en . -bo:25972 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.1.1.62"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.62"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25972"@en . - bo:17041 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "phospholipase C [EC:3.1.4.3]"@en ; rdfs:label "PLCC"@en ; @@ -101634,11 +101634,11 @@ bo:18808 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "UBIH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008681"^^xsd:string ; + owl:hasValue "COG0654"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0654"^^xsd:string ; + owl:hasValue "0008681"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -101814,11 +101814,11 @@ bo:19637 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "GO:0003885"@en , "D-arabinono-1 4-lactone:oxygen oxidoreductase"@en , "D-arabinono-1,4-lactone oxidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003885"^^xsd:string ; + owl:hasValue "1.1.3.37-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.3.37-RXN"^^xsd:string ; + owl:hasValue "GO:0003885"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -102240,6 +102240,25 @@ bo:30078 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30078"@en . +bo:26588 a bo:1256 , sybio:Protein , owl:NamedIndividual , bo:820 ; + rdfs:comment "BSU28790;L-ribulokinase"@en , "Ribulokinase;derived protein"@en ; + rdfs:label "BSU28790"@en , "AraB"@en , "araB"@en ; + sybio:AA "MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQKLPRDWALQHPADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQPLCMLPEYEEEPHSYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRYGGKISSEWMIPKVMQIAEEAPHIYEAADRIIEAADWIVYQLCGSLKRSNCTAGYKAMWSEKAGYPSDDFFEKLNPSMKTITKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMIMGTSTCHVLLGEEVHIVPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPPAYQEEAKEKNIGVHELLSEKANHQAPGESGLLALDWWNGNRSTLVDADLTGMLLGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIYADVTNMDIKISGSPQAPALGSAIFGALAAGKEKGGYDDIKKAAANMGKLKDITYTPNAENAAVYEKLYAEYKELVHYFGKENHVMKRLKTIKNLQFSSAAKKN"@en ; + sybio:accession "16079931"^^xsd:string , "936019"^^xsd:string , "P94524"^^xsd:string , "BSU28790"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:29034 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "61007.365"^^xsd:string ; + sybio:pI "5.364021"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26589 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26588"@en . + bo:11278 a owl:NamedIndividual , sybio:Protein , bo:326 ; rdfs:comment "30S ribosomal protein S19"@en , "BSU01200;ribosomal protein S19 (BS19)"@en ; rdfs:label "rpsS"@en , "BSU01200"@en , "RpsS"@en ; @@ -102261,25 +102280,6 @@ bo:11278 a owl:NamedIndividual , sybio:Protein , bo:326 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11278"@en . -bo:26588 a bo:1256 , sybio:Protein , owl:NamedIndividual , bo:820 ; - rdfs:comment "BSU28790;L-ribulokinase"@en , "Ribulokinase;derived protein"@en ; - rdfs:label "BSU28790"@en , "AraB"@en , "araB"@en ; - sybio:AA "MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPKTGQKLPRDWALQHPADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQPLCMLPEYEEEPHSYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRYGGKISSEWMIPKVMQIAEEAPHIYEAADRIIEAADWIVYQLCGSLKRSNCTAGYKAMWSEKAGYPSDDFFEKLNPSMKTITKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGITEPGKMLMIMGTSTCHVLLGEEVHIVPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFVKTCVPPAYQEEAKEKNIGVHELLSEKANHQAPGESGLLALDWWNGNRSTLVDADLTGMLLGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIYADVTNMDIKISGSPQAPALGSAIFGALAAGKEKGGYDDIKKAAANMGKLKDITYTPNAENAAVYEKLYAEYKELVHYFGKENHVMKRLKTIKNLQFSSAAKKN"@en ; - sybio:accession "16079931"^^xsd:string , "936019"^^xsd:string , "P94524"^^xsd:string , "BSU28790"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:29034 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "61007.365"^^xsd:string ; - sybio:pI "5.364021"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26589 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26588"@en . - bo:30166 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24510"@en ; rdfs:label "BSU24510"@en , "yqhO"@en ; @@ -102305,24 +102305,6 @@ bo:30166 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30166"@en . -bo:11366 a sybio:Protein , bo:520 , owl:NamedIndividual , bo:519 ; - rdfs:comment "Phenolic acid decarboxylase subunit B"@en , "BSU03630;putative 3-polyprenyl-4-hydroxybenzoate decarboxylase;"@en ; - rdfs:label "BSU03630"@en , "bsdB"@en , "UbiX"@en , "YclB"@en ; - sybio:AA "MKAEFKRKGGGKVKLVVGMTGATGAIFGVRLLQWLKAAGVETHLVVSPWANVTIKHETGYTLQEVEQLATYTYSHKDQAAAISSGSFDTDGMIVAPCSMKSLASIRTGMADNLLTRAADVMLKERKKLVLLTRETPLNQIHLENMLALTKMGTIILPPMPAFYNRPRSLEEMVDHIVFRTLDQFGIRLPEAKRWNGIEKQKGGA"@en ; - sybio:accession "BSU03630"^^xsd:string , "P94404"^^xsd:string ; - sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29274 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "22538.465"^^xsd:string ; - sybio:pI "9.64695"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:relatedTo bo:11367 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11366"@en . - bo:26676 a bo:512 , owl:NamedIndividual , sybio:Protein , bo:513 ; rdfs:comment "BSU28560;long chain acyl-CoA ligase (degradative);;"@en , "Long-chain-fatty-acid--CoA ligase;derived protein"@en ; rdfs:label "lcfA"@en , "FadD"@en , "BSU28560"@en , "LcfA"@en ; @@ -102341,6 +102323,24 @@ bo:26676 a bo:512 , owl:NamedIndividual , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "26676"@en . +bo:11366 a sybio:Protein , bo:520 , owl:NamedIndividual , bo:519 ; + rdfs:comment "Phenolic acid decarboxylase subunit B"@en , "BSU03630;putative 3-polyprenyl-4-hydroxybenzoate decarboxylase;"@en ; + rdfs:label "BSU03630"@en , "bsdB"@en , "UbiX"@en , "YclB"@en ; + sybio:AA "MKAEFKRKGGGKVKLVVGMTGATGAIFGVRLLQWLKAAGVETHLVVSPWANVTIKHETGYTLQEVEQLATYTYSHKDQAAAISSGSFDTDGMIVAPCSMKSLASIRTGMADNLLTRAADVMLKERKKLVLLTRETPLNQIHLENMLALTKMGTIILPPMPAFYNRPRSLEEMVDHIVFRTLDQFGIRLPEAKRWNGIEKQKGGA"@en ; + sybio:accession "BSU03630"^^xsd:string , "P94404"^^xsd:string ; + sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29274 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "22538.465"^^xsd:string ; + sybio:pI "9.64695"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:relatedTo bo:11367 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11366"@en . + bo:6092 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ywbO"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -102374,6 +102374,25 @@ bo:30254 a sybio:CDS , owl:NamedIndividual ; "1.0"@en ; tawny:name "30254"@en . +bo:26764 a owl:NamedIndividual , sybio:Protein , bo:1766 ; + rdfs:comment "Histidinol dehydrogenase;derived protein"@en , "histidinol dehydrogenase;BSU34910"@en ; + rdfs:label "BSU34910"@en , "hisD"@en , "HisD"@en ; + sybio:AA "MKIKTISGAERLSLKRSIDAGTEEQRKTVRSIIEDVKANGDQAVRSYTAKFDCIEIDSPLVTKEEFEEAYTSLDSRLLQVIRQAIENIREYHERQLQSSWFYHRKDGTMLGQKVTALDSAGVYVPGGTAAYPSSVLMNVIPALVAGVERIVLVTPPGKDGLLSPGVLVAAAELGIKDIYKMGGAQAIAALAYGTETIEPVDKITGPGNIYVALAKREVFGDVDIDMIAGPSEIVVLADETAIPSEIAADLLSQAEHDKLSSCVFVTDSMALAETVSAEVNKQLETLPRREIAEASVRDYGCIYVAETMVEAIETVNTLAPEHLEIITQSPEALLGSIKHAGAIFLGRYSPEPVGDYFAGPNHVLPTNGTARFSSPLNVTDFQKKSSIISYSQSAFEEHAESIAAFARLEGLEAHARSIEARERRISK"@en ; + sybio:accession "16080544"^^xsd:string , "O34651"^^xsd:string , "936584"^^xsd:string , "BSU34910"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32968 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "46254.77"^^xsd:string ; + sybio:pI "4.963478"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26766 , bo:26765 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26764"@en . + bo:11454 a sybio:Protein , bo:799 , owl:NamedIndividual , bo:800 ; rdfs:comment "BSU08850;aliphatic sulfonate ABC transporter (permease)"@en , "Putative aliphatic sulfonates transport permease protein ssuC"@en ; rdfs:label "ssuC"@en , "YzeB"@en , "BSU08850"@en , "SsuC"@en , "YgaM"@en ; @@ -102395,25 +102414,6 @@ bo:11454 a sybio:Protein , bo:799 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "11454"@en . -bo:26764 a owl:NamedIndividual , sybio:Protein , bo:1766 ; - rdfs:comment "Histidinol dehydrogenase;derived protein"@en , "histidinol dehydrogenase;BSU34910"@en ; - rdfs:label "BSU34910"@en , "hisD"@en , "HisD"@en ; - sybio:AA "MKIKTISGAERLSLKRSIDAGTEEQRKTVRSIIEDVKANGDQAVRSYTAKFDCIEIDSPLVTKEEFEEAYTSLDSRLLQVIRQAIENIREYHERQLQSSWFYHRKDGTMLGQKVTALDSAGVYVPGGTAAYPSSVLMNVIPALVAGVERIVLVTPPGKDGLLSPGVLVAAAELGIKDIYKMGGAQAIAALAYGTETIEPVDKITGPGNIYVALAKREVFGDVDIDMIAGPSEIVVLADETAIPSEIAADLLSQAEHDKLSSCVFVTDSMALAETVSAEVNKQLETLPRREIAEASVRDYGCIYVAETMVEAIETVNTLAPEHLEIITQSPEALLGSIKHAGAIFLGRYSPEPVGDYFAGPNHVLPTNGTARFSSPLNVTDFQKKSSIISYSQSAFEEHAESIAAFARLEGLEAHARSIEARERRISK"@en ; - sybio:accession "16080544"^^xsd:string , "O34651"^^xsd:string , "936584"^^xsd:string , "BSU34910"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32968 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "46254.77"^^xsd:string ; - sybio:pI "4.963478"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26766 , bo:26765 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26764"@en . - bo:6180 a sybio:Operon , owl:NamedIndividual ; rdfs:label "wapA-yxxG"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -102511,6 +102511,17 @@ bo:30430 a owl:NamedIndividual , sybio:CDS ; "68.0"@en ; tawny:name "30430"@en . +bo:11630 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00410"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00410"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11630"@en . + bo:26940 a sybio:Protein , bo:510 , owl:NamedIndividual ; rdfs:comment "3-hexulose-6-phosphate synthase;derived protein"@en , "3-hexulose-6-phosphate synthase (HPS);BSU03460"@en ; rdfs:label "HxlA"@en , "BSU03460"@en , "YckG"@en , "hxlA"@en ; @@ -102530,32 +102541,21 @@ bo:26940 a sybio:Protein , bo:510 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26940"@en . -bo:11630 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00410"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00410"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11630"@en . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine = AMP + 2-amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine."@en ; - rdfs:label "6-hydroxymethyl-7 8-dihydropterin pyrophosphokinase"@en , "H2-pteridine-CH2OH pyrophosphokinase"@en , "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase"@en , "7 8-dihydro-6-hydroxymethylpterin diphosphokinase"@en , "6-hydroxymethyl-7 8-dihydropterin diphosphokinase"@en , "7 8-dihydro-6-hydroxymethylpterin pyrophosphokinase"@en , "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase"@en , "ATP:2-amino-4-hydroxy-6-hydroxymethyl-7 8-dihydropteridine 6'-diphosphotransferase"@en , "7 8-dihydroxymethylpterin-pyrophosphokinase"@en , "hydroxymethyldihydropteridine pyrophosphokinase"@en , "GO:0003848"@en , "HPPK"@en ; + rdfs:label "6-hydroxymethyl-7 8-dihydropterin pyrophosphokinase"@en , "H2-pteridine-CH2OH pyrophosphokinase"@en , "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase"@en , "7 8-dihydro-6-hydroxymethylpterin diphosphokinase"@en , "6-hydroxymethyl-7 8-dihydropterin diphosphokinase"@en , "7 8-dihydro-6-hydroxymethylpterin pyrophosphokinase"@en , "2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase"@en , "ATP:2-amino-4-hydroxy-6-hydroxymethyl-7 8-dihydropteridine 6'-diphosphotransferase"@en , "hydroxymethyldihydropteridine pyrophosphokinase"@en , "7 8-dihydroxymethylpterin-pyrophosphokinase"@en , "GO:0003848"@en , "HPPK"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003848"^^xsd:string ; + owl:hasValue "H2PTERIDINEPYROPHOSPHOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "H2PTERIDINEPYROPHOSPHOKIN-RXN"^^xsd:string ; + owl:hasValue "2.7.6.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.6.3"^^xsd:string ; + owl:hasValue "GO:0003848"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -102610,11 +102610,11 @@ bo:5226 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRNA-CYTIDYLYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0016437"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016437"^^xsd:string ; + owl:hasValue "TRNA-CYTIDYLYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -102770,7 +102770,7 @@ bo:32938 a sybio:CDS , owl:NamedIndividual ; rdfs:label "shikimate kinase"@en , "ATP:shikimate 3-phosphotransferase"@en , "GO:0004765"@en , "shikimate kinase II"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004765"^^xsd:string ; + owl:hasValue "SHIKIMATE-KINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -102778,7 +102778,7 @@ bo:32938 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SHIKIMATE-KINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004765"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -102790,19 +102790,19 @@ bo:32938 a sybio:CDS , owl:NamedIndividual ; rdfs:label "uroporphyrinogen III decarboxylase"@en , "uroporphyrinogen-III carboxy-lyase"@en , "uroporphyrinogen decarboxylase"@en , "GO:0004853"@en , "porphyrinogen carboxy-lyase"@en , "porphyrinogen decarboxylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UROGENDECARBOX-RXN"^^xsd:string ; + owl:hasValue "GO:0004853"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004853"^^xsd:string ; + owl:hasValue "UROGENDECARBOX-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15202 \"uroporphyrinogen decarboxylase activity\""^^xsd:string ; + owl:hasValue "4.1.1.37"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.37"^^xsd:string ; + owl:hasValue "15202 \"uroporphyrinogen decarboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -103304,16 +103304,6 @@ bo:31310 a sybio:CDS , owl:NamedIndividual ; "7.0"@en ; tawny:name "31310"@en . -bo:27820 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "yyaC_RBS_upstream"@en ; - sybio:NA "TACATAACTACACACACCATAGCAATTCTGTTACCTACT"^^xsd:string ; - sybio:begin "4204841"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "4204879"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27819 ; - tawny:name "27820"@en . - bo:12510 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C6H15N2O6P"@en ; rdfs:label "C6H15N2O6P"@en , "5-Phosphonooxy-L-lysine"@en , "O-Phosphohydroxy-L-lysine"@en ; @@ -103324,17 +103314,27 @@ bo:12510 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03366"@en ; tawny:name "12510"@en . +bo:27820 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "yyaC_RBS_upstream"@en ; + sybio:NA "TACATAACTACACACACCATAGCAATTCTGTTACCTACT"^^xsd:string ; + sybio:begin "4204841"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "4204879"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27819 ; + tawny:name "27820"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn)."@en ; rdfs:label "asparagyl-transfer RNA synthetase"@en , "GO:0004816"@en , "asparagine-tRNA ligase"@en , "asparaginyl-transfer ribonucleate synthetase"@en , "asparagine translase"@en , "asparaginyl transfer ribonucleic acid synthetase"@en , "L-asparagine:tRNAAsn ligase"@en , "asparaginyl transfer RNA synthetase"@en , "asparaginyl-tRNA synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPARAGINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004816"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.22"^^xsd:string ; + owl:hasValue "ASPARAGINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -103342,7 +103342,7 @@ bo:12510 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004816"^^xsd:string ; + owl:hasValue "6.1.1.22"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -103834,11 +103834,11 @@ bo:15759 a owl:NamedIndividual , sybio:KOPR ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006298"^^xsd:string ; + owl:hasValue "DNA_mismatch_repair"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA_mismatch_repair"^^xsd:string ; + owl:hasValue "GO:0006298"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -103849,11 +103849,11 @@ bo:15847 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "LDCC"@en , "CADA"@en , "E4.1.1.18"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008923"^^xsd:string ; + owl:hasValue "COG1982"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1982"^^xsd:string ; + owl:hasValue "0008923"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -103893,79 +103893,69 @@ bo:16589 a owl:NamedIndividual , sybio:KOGE ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16677 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15]"@en ; - rdfs:label "TRYP"@en ; - sybio:accession "0051920"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16676 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186"@en ; - tawny:name "16677"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins."@en ; rdfs:label "proline catabolism"@en , "GO:0006562"@en , "proline catabolic process"@en , "proline breakdown"@en , "proline degradation"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597413 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "592802 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558056 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "599754 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599754 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "552444 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526615 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "470239 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547871 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "531415 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592802 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "600655 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470239 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "581904 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600655 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "487922 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552444 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "507893 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581904 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "517785 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595530 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "597413 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536786 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "526615 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487922 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "558056 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70688 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "542543 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531415 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "598182 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -103973,7 +103963,7 @@ bo:16677 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542543 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "536786 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -103981,38 +103971,48 @@ bo:16677 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598182 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "GO:0006562"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006562"^^xsd:string ; + owl:hasValue "449128 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517785 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "547871 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449128 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "595530 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507893 \"Proline catabolism\""^^xsd:string ; + owl:hasValue "70688 \"Proline catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16677 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15]"@en ; + rdfs:label "TRYP"@en ; + sybio:accession "0051920"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16676 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186"@en ; + tawny:name "16677"@en . + bo:16765 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "trehalose-phosphatase [EC:3.1.3.12]"@en ; rdfs:label "E3.1.3.12"@en , "OTSB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004805"^^xsd:string ; + owl:hasValue "COG1877"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1877"^^xsd:string ; + owl:hasValue "0004805"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -104422,6 +104422,13 @@ bo:1437 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1437"@en . + + a owl:Class ; + rdfs:comment "Collapsed CV Set"@en ; + rdfs:label "BacilluScope:GOAEBI:String"@en ; + rdfs:subClassOf sybio:DataSource ; + tawny:name "BacilluScope:GOAEBI:String"@en . + bo:17682 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "methylmalonyl-CoA carboxyltransferase [EC:2.1.3.1]"@en ; rdfs:label "E2.1.3.1"@en ; @@ -104432,13 +104439,6 @@ bo:17682 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03416"@en ; tawny:name "17682"@en . - - a owl:Class ; - rdfs:comment "Collapsed CV Set"@en ; - rdfs:label "BacilluScope:GOAEBI:String"@en ; - rdfs:subClassOf sybio:DataSource ; - tawny:name "BacilluScope:GOAEBI:String"@en . - bo:29265 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU03200"@en ; rdfs:label "BSU03200"@en , "ycgM"@en ; @@ -104735,41 +104735,41 @@ bo:2178 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "2178"@en . +bo:2266 a sybio:Protein , owl:NamedIndividual ; + rdfs:comment "BSU21160;conserved hypothetical protein; phage SPbeta"@en ; + rdfs:label "YonA"@en , "BSU21160"@en ; + sybio:AA "LTEKIKLARYRSTSYFVGYTGDGGHKQYTWSGSKNGKADIKEVPKEVVEWLTMNSVCFDKGELVIVEDNETTKEIKDSIVESEAYENNIHTKEEIEKMIKSGNIAQLKNKLDKITVDSEKQFIIDVASEFSDDIAAGKLKVLADWMGVADPSLLFD"@en ; + sybio:accession "BSU21160"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:30047 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "17543.095"^^xsd:string ; + sybio:pI "4.871407"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2266"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ADP + phosphate = ATP + H2O, coupled with transport of H+ down a concentration gradient, by a rotational mechanism."@en ; rdfs:label "H+-transporting ATP synthase"@en , "hydrogen ion transporting ATP synthase activity, rotational mechanism"@en , "hydrogen ion translocating F-type ATPase"@en , "GO:0046933"@en , "hydrogen ion transporting two-sector ATPase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046933"^^xsd:string ; + owl:hasValue "78757 \"hydrogen ion transporting ATP synthase activity, rotational mechanism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ATPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0046933"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "78757 \"hydrogen ion transporting ATP synthase activity, rotational mechanism\""^^xsd:string ; + owl:hasValue "ATPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2266 a sybio:Protein , owl:NamedIndividual ; - rdfs:comment "BSU21160;conserved hypothetical protein; phage SPbeta"@en ; - rdfs:label "YonA"@en , "BSU21160"@en ; - sybio:AA "LTEKIKLARYRSTSYFVGYTGDGGHKQYTWSGSKNGKADIKEVPKEVVEWLTMNSVCFDKGELVIVEDNETTKEIKDSIVESEAYENNIHTKEEIEKMIKSGNIAQLKNKLDKITVDSEKQFIIDVASEFSDDIAAGKLKVLADWMGVADPSLLFD"@en ; - sybio:accession "BSU21160"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:30047 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "17543.095"^^xsd:string ; - sybio:pI "4.871407"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2266"@en . - bo:22938 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "primary-amine oxidase"@en , "cpd:C00986 => cpd:C00986"@en , "C00986 + C00007 + C00001 <=> C05665 + C00014 + C00027"@en ; @@ -104787,11 +104787,11 @@ bo:22938 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0009987"@en , "cellular process"@en , "cellular physiological process"@en , "cell physiology"@en , "cell growth and or maintenance"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050875"^^xsd:string ; + owl:hasValue "GO:0008151"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008151"^^xsd:string ; + owl:hasValue "GO:0050875"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -104907,11 +104907,11 @@ bo:17557 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "thiaminase"@en , "thiaminase II"@en , "GO:0050334"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.99.2"^^xsd:string ; + owl:hasValue "THIAMINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THIAMINASE-RXN"^^xsd:string ; + owl:hasValue "3.5.99.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -105338,7 +105338,7 @@ bo:30983 a sybio:CDS , owl:NamedIndividual ; "141.0"@en ; tawny:name "30983"@en . -bo:18562 a sybio:KOEN , owl:Class , owl:NamedIndividual ; +bo:18562 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "cytochrome P450, family 51, subfamily A (sterol 14-demethylase)[EC:1.14.13.70]"@en ; rdfs:label "CYP51"@en ; rdfs:subClassOf sybio:KOEN ; @@ -105666,7 +105666,7 @@ bo:18349 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "thiol protease"@en , "GO:0008234"@en , "cysteine-type peptidase"@en , "cysteine protease"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004220"^^xsd:string ; + owl:hasValue "3.4.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -105674,7 +105674,7 @@ bo:18349 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.-.-"^^xsd:string ; + owl:hasValue "GO:0004220"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -105787,11 +105787,11 @@ bo:18525 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "GO:0008410"@en , "CoA-transferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.3.-"^^xsd:string ; + owl:hasValue "GO:0008410"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008410"^^xsd:string ; + owl:hasValue "2.8.3.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -106199,24 +106199,6 @@ bo:31951 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "31951"@en . -bo:10078 a sybio:Protein , owl:NamedIndividual , bo:412 ; - rdfs:comment "BSU05360;putative permease"@en , "Uncharacterized transporter ydfC"@en ; - rdfs:label "YdfC"@en , "ydfC"@en , "BSU05360"@en ; - sybio:AA "MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAFSESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGASEATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSAKRVKKL"@en ; - sybio:accession "BSU05360"^^xsd:string , "P96680"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:31964 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "5.2 : From other organisms"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "33558.125"^^xsd:string ; - sybio:pI "9.582329"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10078"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Interacting selectively and non-covalently with double-stranded DNA.;"@en ; @@ -106252,6 +106234,35 @@ bo:25388 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25388"@en . +bo:10078 a sybio:Protein , owl:NamedIndividual , bo:412 ; + rdfs:comment "BSU05360;putative permease"@en , "Uncharacterized transporter ydfC"@en ; + rdfs:label "YdfC"@en , "ydfC"@en , "BSU05360"@en ; + sybio:AA "MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAFSESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGASEATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSAKRVKKL"@en ; + sybio:accession "BSU05360"^^xsd:string , "P96680"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:31964 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "5.2 : From other organisms"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "33558.125"^^xsd:string ; + sybio:pI "9.582329"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10078"@en . + +bo:25476 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "DDE dehalogenase - reversible"@en ; + rdfs:label "C04596 <=> C06637 + C00698"@en , "cpd:C04596 <=> cpd:C04596"@en ; + sybio:accession "RN:R05497"^^xsd:string ; + sybio:catalyzedBy bo:18586 ; + sybio:catalyzingClass bo:22581 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25476"@en . + bo:10166 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU18490;replication terminator protein"@en , "Replication termination protein;"@en ; rdfs:label "BSU18490"@en , "Rtp"@en , "rtp"@en ; @@ -106270,16 +106281,17 @@ bo:10166 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10166"@en . -bo:25476 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "DDE dehalogenase - reversible"@en ; - rdfs:label "C04596 <=> C06637 + C00698"@en , "cpd:C04596 <=> cpd:C04596"@en ; - sybio:accession "RN:R05497"^^xsd:string ; - sybio:catalyzedBy bo:18586 ; - sybio:catalyzingClass bo:22581 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25476"@en . +bo:25564 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.2.1.113"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.2.1.113"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25564"@en . bo:10254 a bo:1319 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative phosphatidylglycerophosphatase;BSU21830"@en , "Uncharacterized protein ypjQ"@en ; @@ -106298,18 +106310,6 @@ bo:10254 a bo:1319 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10254"@en . -bo:25564 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.2.1.113"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.113"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25564"@en . - bo:25652 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "G06780 + C00001 <=> G08421 + C01132"@en , " <=> "@en ; @@ -106582,6 +106582,26 @@ bo:4202 a sybio:Operator , sybio:PositivelyRegulatedOperator sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:26393 a bo:1106 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "derived protein;Guanylate kinase"@en , "guanylate kinase;BSU15680;"@en ; + rdfs:label "Gmk"@en , "YloD"@en , "BSU15680"@en , "gmk"@en ; + sybio:AA "MKERGLLIVLSGPSGVGKGTVRQAIFSQEDTKFEYSISVTTRSPREGEVNGVDYFFKTRDEFEQMIADNKLLEWAEYVGNYYGTPVDYVEQTLQDGKDVFLEIEVQGALQVRNAFPEGLFIFLAPPSLSELKNRIVTRGTETDALIENRMKAAKAEIEMMDAYDYVVENDNVETACDKIKAIVLAEHLKRERVAPRYKKMLEVE"@en ; + sybio:accession "50812226"^^xsd:string , "938821"^^xsd:string , "O34328"^^xsd:string , "BSU15680"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32825 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "23217.525"^^xsd:string ; + sybio:pI "4.813728"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26548 , bo:26697 , bo:26381 , bo:26715 , bo:26698 , bo:26382 , bo:26366 , bo:26349 , bo:26467 , bo:26602 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26393"@en . + bo:11083 a sybio:Protein , owl:NamedIndividual , bo:1797 , bo:565 ; rdfs:comment "BSU35680;poly(glucosyl N-acetylgalactosamine 1-phosphate) glucosyltransferase"@en , "Minor teichoic acid biosynthesis protein ggaB"@en ; rdfs:label "BSU35680"@en , "GgaB"@en , "ggaB"@en ; @@ -106602,25 +106622,23 @@ bo:11083 a sybio:Protein , owl:NamedIndividual , bo:1797 , sybio:taxId "[224308, 1423]"@en ; tawny:name "11083"@en . -bo:26393 a bo:1106 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "derived protein;Guanylate kinase"@en , "guanylate kinase;BSU15680;"@en ; - rdfs:label "Gmk"@en , "YloD"@en , "BSU15680"@en , "gmk"@en ; - sybio:AA "MKERGLLIVLSGPSGVGKGTVRQAIFSQEDTKFEYSISVTTRSPREGEVNGVDYFFKTRDEFEQMIADNKLLEWAEYVGNYYGTPVDYVEQTLQDGKDVFLEIEVQGALQVRNAFPEGLFIFLAPPSLSELKNRIVTRGTETDALIENRMKAAKAEIEMMDAYDYVVENDNVETACDKIKAIVLAEHLKRERVAPRYKKMLEVE"@en ; - sybio:accession "50812226"^^xsd:string , "938821"^^xsd:string , "O34328"^^xsd:string , "BSU15680"^^xsd:string ; +bo:26481 a bo:204 , bo:1390 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU23280;fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase"@en , "Riboflavin biosynthesis protein ribD;;derived protein"@en ; + rdfs:label "RibG"@en , "5-phosphoribosylamino"@en , "RibD"@en , "ribD"@en , "BSU23280"@en ; + sybio:AA "MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPTKE"@en ; + sybio:accession "P17618"^^xsd:string , "938945"^^xsd:string , "16079385"^^xsd:string , "BSU23280"^^xsd:string ; sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32825 ; + sybio:encodedBy bo:32397 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; + sybio:hasFunction , , , , , , , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "23217.525"^^xsd:string ; - sybio:pI "4.813728"^^xsd:string ; + sybio:molecularWeight "39303.73"^^xsd:string ; + sybio:pI "6.10305"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26548 , bo:26697 , bo:26381 , bo:26715 , bo:26698 , bo:26382 , bo:26366 , bo:26349 , bo:26467 , bo:26602 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "26393"@en . + tawny:name "26481"@en . bo:11171 a sybio:Protein , bo:607 , owl:NamedIndividual , bo:550 ; rdfs:comment "Uncharacterized esterase yxiM;"@en , "putative esterase (lipoprotein);BSU39120"@en ; @@ -106640,39 +106658,21 @@ bo:11171 a sybio:Protein , bo:607 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "11171"@en . -bo:26481 a bo:204 , bo:1390 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU23280;fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase"@en , "Riboflavin biosynthesis protein ribD;;derived protein"@en ; - rdfs:label "RibG"@en , "5-phosphoribosylamino"@en , "RibD"@en , "ribD"@en , "BSU23280"@en ; - sybio:AA "MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPTKE"@en ; - sybio:accession "P17618"^^xsd:string , "938945"^^xsd:string , "16079385"^^xsd:string , "BSU23280"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32397 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "39303.73"^^xsd:string ; - sybio:pI "6.10305"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26481"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: D-altronate + NAD+ = D-tagaturonate + NADH + H+."@en ; rdfs:label "GO:0009026"@en , "altronic oxidoreductase"@en , "D-tagaturonate reductase"@en , "tagaturonate dehydrogenase"@en , "altronate dehydrogenase"@en , "D-altronate:NAD+ 3-oxidoreductase"@en , "altronate oxidoreductase"@en , "tagaturonate reductase"@en , "TagUAR"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009026"^^xsd:string ; + owl:hasValue "1.1.1.58"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.58"^^xsd:string ; + owl:hasValue "ALTRO-OXIDOREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALTRO-OXIDOREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0009026"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -106891,7 +106891,7 @@ bo:10305 a sybio:Protein , owl:NamedIndividual ; rdfs:label "GO:0016154"@en , "pyrimidine-nucleoside phosphorylase"@en , "Py-NPase"@en , "pyrimidine-nucleoside:phosphate alpha-D-ribosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.2"^^xsd:string ; + owl:hasValue "PYRIMIDINE-NUCLEOSIDE-PHOSPHORYLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -106899,7 +106899,7 @@ bo:10305 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PYRIMIDINE-NUCLEOSIDE-PHOSPHORYLASE-RXN"^^xsd:string ; + owl:hasValue "2.4.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -106953,6 +106953,17 @@ bo:32479 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu17640"@en ; tawny:name "32479"@en . +bo:13679 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C8H13N2O5P"@en ; + rdfs:label "Pyridoxamine 5-phosphate"@en , "Pyridoxamine phosphate"@en , "C8H13N2O5P"@en , "Pyridoxamine 5'-phosphate"@en ; + sybio:accession "529-96-4"^^xsd:string , "3919"^^xsd:string , "18335"^^xsd:string , "B00154"^^xsd:string , "C00647"^^xsd:string ; + sybio:consumedBy bo:24582 , bo:24555 , bo:24563 , bo:24585 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24585 , bo:24562 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00647"@en ; + tawny:name "13679"@en . + bo:28989 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "phosphotransferase system (PTS) fructose-specific enzyme IIC component"@en , "BSU27050"@en ; rdfs:label "BSU27050"@en , "PTS"@en , "levF"@en , "phosphotransferase system fructose-specific enzyme IIC component"@en ; @@ -106980,17 +106991,6 @@ bo:28989 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu27050"@en ; tawny:name "28989"@en . -bo:13679 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C8H13N2O5P"@en ; - rdfs:label "Pyridoxamine 5-phosphate"@en , "Pyridoxamine phosphate"@en , "C8H13N2O5P"@en , "Pyridoxamine 5'-phosphate"@en ; - sybio:accession "529-96-4"^^xsd:string , "3919"^^xsd:string , "18335"^^xsd:string , "B00154"^^xsd:string , "C00647"^^xsd:string ; - sybio:consumedBy bo:24582 , bo:24555 , bo:24563 , bo:24585 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24585 , bo:24562 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00647"@en ; - tawny:name "13679"@en . - bo:32567 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "putative translaldolase (EC:2.2.1.2)"@en , "BSU37110"@en ; rdfs:label "BSU37110"@en , "ywjH"@en ; @@ -107787,15 +107787,15 @@ bo:9285 a owl:NamedIndividual , sybio:Protein ; rdfs:label "fructose-1 6-bisphosphatase"@en , "fructose 1 6-bisphosphate phosphatase"@en , "hexosediphosphatase"@en , "D-fructose-1 6-bisphosphate phosphatase"@en , "fructose 1 6-diphosphate phosphatase"@en , "fructose-bisphosphatase"@en , "fructose bisphosphate phosphatase"@en , "hexose bisphosphatase"@en , "hexose diphosphatase"@en , "fructose 1 6-bisphosphatase"@en , "fructose 1,6-bisphosphate 1-phosphatase"@en , "fructose diphosphatase"@en , "FBPase"@en , "GO:0042132"@en , "fructose diphosphate phosphatase"@en , "D-fructose 1 6-diphosphatase"@en , "fructose 1 6-diphosphatase"@en , "D-fructose-1 6-bisphosphate 1-phosphohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "9272 \"fructose 1,6-bisphosphate 1-phosphatase activity\""^^xsd:string ; + owl:hasValue "GO:0042132"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "F16BDEPHOS-RXN"^^xsd:string ; + owl:hasValue "9272 \"fructose 1,6-bisphosphate 1-phosphatase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042132"^^xsd:string ; + owl:hasValue "F16BDEPHOS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -107918,11 +107918,11 @@ bo:14911 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E2.7.7.10"@en , "GALT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1085"^^xsd:string ; + owl:hasValue "0003982"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003982"^^xsd:string ; + owl:hasValue "COG1085"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -108058,11 +108058,11 @@ bo:15388 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "ALLA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3194"^^xsd:string ; + owl:hasValue "0004848"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004848"^^xsd:string ; + owl:hasValue "COG3194"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -108110,15 +108110,15 @@ bo:15652 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E6.4.1.4A"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004485"^^xsd:string ; + owl:hasValue "COG0511"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0511"^^xsd:string ; + owl:hasValue "COG0439"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0439"^^xsd:string ; + owl:hasValue "0004485"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -108273,18 +108273,6 @@ bo:22692 a owl:NamedIndividual , sybio:Reaction ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:3699 a sybio:PositivelyRegulatedOperator , sybio:Operator , owl:NamedIndividual ; - rdfs:comment "Positive"@en ; - rdfs:label "DegU_amyE"@en ; - sybio:boundBy bo:6812 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2698 ; - sybio:pmid "809421,809423,827683"^^xsd:string ; - sybio:regulationType "Positive"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3699"@en . - bo:9424 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Sporulation inhibitor of replication protein sirA"@en , "conserved hypothetical protein;BSU17900"@en ; rdfs:label "YoxF"@en , "sirA"@en , "BSU17900"@en , "YneE"@en ; @@ -108302,6 +108290,18 @@ bo:9424 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9424"@en . +bo:3699 a sybio:PositivelyRegulatedOperator , sybio:Operator , owl:NamedIndividual ; + rdfs:comment "Positive"@en ; + rdfs:label "DegU_amyE"@en ; + sybio:boundBy bo:6812 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2698 ; + sybio:pmid "809421,809423,827683"^^xsd:string ; + sybio:regulationType "Positive"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3699"@en . + bo:22780 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "S-Adenosyl-L-methionine"@en , "N-acetylserotonin O-methyltransferase"@en , "C00019 + C05635 <=> C00021 + C05660"@en , "cpd:C05635 => cpd:C05635"@en ; @@ -108476,26 +108476,26 @@ bo:29070 a owl:NamedIndividual , sybio:CDS ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol."@en ; - rdfs:label "GO:0008963"@en , "UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C55-isoprenoid alcohol transferase"@en , "phospho-NAc-muramoyl-pentapeptide translocase"@en , "UDP-MurNAc-pentapeptide phosphotransferase"@en , "phosphoacetylmuramoylpentapeptidetransferase"@en , "UDP-MurNAc-Ala-gamma-DGlu-Lys-DAla-DAla:undecaprenylphosphate transferase"@en , "phospho-MurNAc-pentapeptide transferase"@en , "alcohol transferase"@en , "MraY transferase"@en , "phospho-N-acetylmuramoyl-pentapeptide-transferase"@en , "phospho-N-acetylmuramoyl pentapeptide translocase"@en , "UDP-MurNAc-Ala-gammaDGlu-Lys-DAla-DAla:undecaprenylphosphate transferase"@en , "phosphoacetylmuramoylpentapeptide translocase"@en ; + rdfs:label "GO:0008963"@en , "phosphoacetylmuramoylpentapeptidetransferase"@en , "UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C55-isoprenoid alcohol transferase"@en , "phospho-NAc-muramoyl-pentapeptide translocase"@en , "UDP-MurNAc-pentapeptide phosphotransferase"@en , "phospho-MurNAc-pentapeptide transferase"@en , "UDP-MurNAc-Ala-gamma-DGlu-Lys-DAla-DAla:undecaprenylphosphate transferase"@en , "alcohol transferase"@en , "MraY transferase"@en , "phospho-N-acetylmuramoyl-pentapeptide-transferase"@en , "phospho-N-acetylmuramoyl pentapeptide translocase"@en , "UDP-MurNAc-Ala-gammaDGlu-Lys-DAla-DAla:undecaprenylphosphate transferase"@en , "phosphoacetylmuramoylpentapeptide translocase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-9671"^^xsd:string ; + owl:hasValue "RXN-8975"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSNACMURPENTATRANS-RXN"^^xsd:string ; + owl:hasValue "RXN-9671"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008963"^^xsd:string ; + owl:hasValue "2.7.8.13"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8975"^^xsd:string ; + owl:hasValue "GO:0008963"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.13"^^xsd:string ; + owl:hasValue "PHOSNACMURPENTATRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -108580,16 +108580,6 @@ bo:16357 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00669"@en ; tawny:name "16357"@en . -bo:16445 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "coumermycin A biosynthesis protein CouP"@en ; - rdfs:label "COUP"@en ; - sybio:accession "Q9F8T8"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16446 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12727"@en ; - tawny:name "16445"@en . - bo:4792 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yhxA-glpP_terminator"@en ; sybio:NA "CGGAGACCACAGCAGCTCTTTACGGCAAATGTTTATGCACCCGTAAAGCGGTTTGTTGTGGTTTTTTTATTCTCTTCTTCTCTATCATGCTTTTTAATCGTGA"^^xsd:string ; @@ -108602,6 +108592,16 @@ bo:4792 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4791 ; tawny:name "4792"@en . +bo:16445 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "coumermycin A biosynthesis protein CouP"@en ; + rdfs:label "COUP"@en ; + sybio:accession "Q9F8T8"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16446 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12727"@en ; + tawny:name "16445"@en . + bo:28028 a owl:NamedIndividual , sybio:RBS ; rdfs:label "minC_RBS"@en ; sybio:NA "TTGAGGTGAATATT"^^xsd:string ; @@ -108612,16 +108612,6 @@ bo:28028 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30849 ; tawny:name "28028"@en . -bo:16533 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "peptide synthetase PhsA"@en ; - rdfs:label "PHSA"@en , "K12911"@en ; - sybio:accession "Q56170"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16532 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12911"@en ; - tawny:name "16533"@en . - bo:4880 a sybio:Operon , owl:NamedIndividual ; rdfs:label "med-comZ"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -108640,20 +108630,30 @@ bo:28116 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31306 ; tawny:name "28116"@en . +bo:16533 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "peptide synthetase PhsA"@en ; + rdfs:label "PHSA"@en , "K12911"@en ; + sybio:accession "Q56170"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16532 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12911"@en ; + tawny:name "16533"@en . + bo:16621 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "amygdalin beta-glucosidase [EC:3.2.1.117]"@en ; rdfs:label "AH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047668"^^xsd:string ; + owl:hasValue "GH1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q40984"^^xsd:string ; + owl:hasValue "0047668"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GH1"^^xsd:string ; + owl:hasValue "Q40984"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -108938,27 +108938,27 @@ bo:17362 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573"@en ; tawny:name "17362"@en . -bo:473 a owl:Class ; - rdfs:label "COG0624"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; +bo:1205 a owl:Class ; + rdfs:label "COG0156"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0624"^^xsd:string ; + owl:hasValue "COG0156"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "473"@en . + tawny:name "1205"@en . -bo:1205 a owl:Class ; - rdfs:label "COG0156"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:473 a owl:Class ; + rdfs:label "COG0624"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0156"^^xsd:string ; + owl:hasValue "COG0624"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1205"@en . + tawny:name "473"@en . bo:17450 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "benzene 1,2-dioxygenase [EC:1.14.12.3]"@en ; @@ -108970,17 +108970,6 @@ bo:17450 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03268"@en ; tawny:name "17450"@en . -bo:561 a owl:Class ; - rdfs:label "COG0551"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0551"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "561"@en . - bo:29033 a sybio:CDS , owl:NamedIndividual , sybio:KinaseEncodingCDS ; rdfs:comment "BSU33020"@en , "two-component sensor histidine kinase"@en ; rdfs:label "yvqB"@en , "cssS"@en , "BSU33020"@en ; @@ -109018,26 +109007,26 @@ bo:29033 a sybio:CDS , owl:NamedIndividual , sybio:KinaseEnco owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008926"^^xsd:string ; + owl:hasValue "MANNPDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MANNPDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0008926"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23396 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "cpd:C02474 => cpd:C02474"@en , "alpha-L-Arabinan arabinofuranohydrolase"@en , "C02474 + C00001 <=> C02474 + C00259"@en ; - sybio:accession "RN:R01762"^^xsd:string ; - sybio:catalyzedBy bo:20010 , bo:20000 ; - sybio:catalyzingClass bo:20001 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11652 ; - tawny:name "23396"@en . +bo:561 a owl:Class ; + rdfs:label "COG0551"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0551"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "561"@en . bo:29121 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU31940"@en ; @@ -109054,6 +109043,17 @@ bo:29121 a sybio:CDS , owl:NamedIndividual ; "31.0"@en ; tawny:name "29121"@en . +bo:23396 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "cpd:C02474 => cpd:C02474"@en , "alpha-L-Arabinan arabinofuranohydrolase"@en , "C02474 + C00001 <=> C02474 + C00259"@en ; + sybio:accession "RN:R01762"^^xsd:string ; + sybio:catalyzedBy bo:20010 , bo:20000 ; + sybio:catalyzingClass bo:20001 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11652 ; + tawny:name "23396"@en . + bo:23484 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.7.1.94"@en ; @@ -109557,21 +109557,6 @@ bo:11599 a owl:Class , owl:NamedIndividual , sybio:Pathway ; sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00311"@en ; tawny:name "11599"@en . -bo:11687 a owl:NamedIndividual , owl:Class , sybio:Pathway ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00631.png"@en ; - rdfs:label "1,2-Dichloroethane degradation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00631"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11688 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00631"@en ; - tawny:name "11687"@en . - bo:30487 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU33250"@en ; rdfs:label "BSU33250"@en , "yvrL"@en ; @@ -109617,6 +109602,21 @@ bo:26997 a sybio:Protein , bo:517 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26997"@en . +bo:11687 a owl:NamedIndividual , owl:Class , sybio:Pathway ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00631.png"@en ; + rdfs:label "1,2-Dichloroethane degradation"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00631"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:derivesFrom bo:11688 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00631"@en ; + tawny:name "11687"@en . + bo:18066 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "adenosylcobinamide kinase / adenosylcobinamide-phosphateguanylyltransferase [EC:2.7.1.156 2.7.7.62]"@en ; rdfs:label "COBP"@en , "COBU"@en ; @@ -109672,11 +109672,11 @@ bo:18154 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "COBI"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2243"^^xsd:string ; + owl:hasValue "0030788"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030788"^^xsd:string ; + owl:hasValue "COG2243"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -110937,6 +110937,17 @@ bo:32460 a sybio:CDS , owl:NamedIndividual ; "29.0"@en ; tawny:name "32460"@en . +bo:13660 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C14H18N2O4"@en ; + rdfs:label "alpha-Ribazole"@en , "C14H18N2O4"@en , "N1-(alpha-D-Ribosyl)-5,6-dimethylbenzimidazole"@en ; + sybio:accession "8070"^^xsd:string , "132-13-8"^^xsd:string , "10329"^^xsd:string , "B05111"^^xsd:string , "C05775"^^xsd:string ; + sybio:consumedBy bo:24930 , bo:24533 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24533 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05775"@en ; + tawny:name "13660"@en . + bo:28970 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "3-oxoacyl-(acyl carrier protein) synthase II (EC:2.3.1.41)"@en , "BSU11340"@en ; rdfs:label "fabF"@en , "yjaY"@en , "BSU11340"@en ; @@ -110964,17 +110975,6 @@ bo:28970 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu11340"@en ; tawny:name "28970"@en . -bo:13660 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C14H18N2O4"@en ; - rdfs:label "alpha-Ribazole"@en , "C14H18N2O4"@en , "N1-(alpha-D-Ribosyl)-5,6-dimethylbenzimidazole"@en ; - sybio:accession "8070"^^xsd:string , "132-13-8"^^xsd:string , "10329"^^xsd:string , "B05111"^^xsd:string , "C05775"^^xsd:string ; - sybio:consumedBy bo:24930 , bo:24533 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24533 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05775"@en ; - tawny:name "13660"@en . - bo:9977 a bo:732 , sybio:Protein , owl:NamedIndividual , bo:809 ; rdfs:comment "Probable flavodoxin-2"@en , "BSU14170;short-chain flavodoxin"@en ; rdfs:label "ykuP"@en , "BSU14170"@en , "YkuP"@en ; @@ -111062,16 +111062,6 @@ bo:31418 a owl:NamedIndividual , sybio:CDS ; "1.0"@en ; tawny:name "31418"@en . -bo:27928 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "lmrA_RBS_upstream"@en ; - sybio:NA "A"^^xsd:string ; - sybio:begin "290719"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "290719"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27927 ; - tawny:name "27928"@en . - bo:12618 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C7H11N3O2"@en ; rdfs:label "N-pros-Methyl-L-histidine"@en , "C7H11N3O2"@en , "1-Methylhistidine"@en , "N(pi)-Methyl-L-histidine"@en , "3-Methylhistidine"@en ; @@ -111083,6 +111073,16 @@ bo:12618 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01152"@en ; tawny:name "12618"@en . +bo:27928 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "lmrA_RBS_upstream"@en ; + sybio:NA "A"^^xsd:string ; + sybio:begin "290719"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "290719"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27927 ; + tawny:name "27928"@en . + bo:7344 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Aspartate transaminase-like protein"@en ; rdfs:label "aspB3"@en ; @@ -112060,31 +112060,31 @@ bo:20626 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "glutamyl-tRNAGln amidotransferase"@en , "glutaminyl-tRNA synthase (glutamine-hydrolyzing)"@en , "glutaminyl-tRNA synthase"@en , "amidotransferase"@en , "glutamyl-tRNAGln:L-glutamine amido-ligase"@en , "Glu-tRNAGln amidotransferase"@en , "Glu-tRNAGln:L-glutamine amido-ligase"@en , "GO:0050567"@en , "Glu-AdT"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050567"^^xsd:string ; + owl:hasValue "6.3.5.7-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008264"^^xsd:string ; + owl:hasValue "Glutaminyl-tRNA_synthase_(glutamine-hydrolysing)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.-"^^xsd:string ; + owl:hasValue "GO:0050567"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.7"^^xsd:string ; + owl:hasValue "GO:0017068"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.7-RXN"^^xsd:string ; + owl:hasValue "GO:0008264"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0017068"^^xsd:string ; + owl:hasValue "6.3.5.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Glutaminyl-tRNA_synthase_(glutamine-hydrolysing)"^^xsd:string ; + owl:hasValue "6.3.5.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -112107,11 +112107,11 @@ bo:17878 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "PDXB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016616"^^xsd:string ; + owl:hasValue "COG0111"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0111"^^xsd:string ; + owl:hasValue "0016616"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -112706,15 +112706,6 @@ bo:22372 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11607 ; tawny:name "22372"@en . -bo:3379 a sybio:SigKPromoter , owl:NamedIndividual , sybio:Promoter ; - rdfs:label "ytaA"@en ; - sybio:boundBy bo:2608 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "12480901"^^xsd:string ; - sybio:upstreamOf bo:32009 ; - tawny:name "3379"@en . - bo:9104 a sybio:Protein , owl:NamedIndividual , bo:364 ; rdfs:comment "Putative HMP/thiamine permease protein ykoE"@en , "thiamine transporter, permease component;BSU13230;"@en ; rdfs:label "ykoE"@en , "YkoE"@en , "ThiV"@en , "BSU13230"@en ; @@ -112733,6 +112724,15 @@ bo:9104 a sybio:Protein , owl:NamedIndividual , bo:364 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9104"@en . +bo:3379 a sybio:SigKPromoter , owl:NamedIndividual , sybio:Promoter ; + rdfs:label "ytaA"@en ; + sybio:boundBy bo:2608 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "12480901"^^xsd:string ; + sybio:upstreamOf bo:32009 ; + tawny:name "3379"@en . + bo:22460 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "L-phenylalanine N-acetyltransferase"@en , "cpd:C00079 => cpd:C00079"@en , "C00024 + C00079 <=> C00010 + C03519"@en , "Acetyl-CoA"@en ; @@ -112844,19 +112844,19 @@ bo:16161 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "thiol peroxidase"@en , "thioredoxin peroxidase"@en , "TPx"@en , "GO:0008379"@en , "TrxPx"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009031"^^xsd:string ; + owl:hasValue "RXN0-267"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008379"^^xsd:string ; + owl:hasValue "GO:0009031"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-267"^^xsd:string ; + owl:hasValue "1.11.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.-"^^xsd:string ; + owl:hasValue "GO:0008379"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -112901,7 +112901,7 @@ bo:190 a owl:Class ; rdfs:label "carbohydrate transport"@en , "GO:0008643"@en , "sugar transport"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006861"^^xsd:string ; + owl:hasValue "GO:0008644"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -112909,7 +112909,7 @@ bo:190 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008644"^^xsd:string ; + owl:hasValue "GO:0006861"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -112961,11 +112961,11 @@ bo:18934 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "OGT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT41"^^xsd:string ; + owl:hasValue "0016262"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016262"^^xsd:string ; + owl:hasValue "GT41"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -113027,6 +113027,14 @@ bo:4472 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4471 ; tawny:name "4472"@en . +bo:4560 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydfK"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30800 ; + sybio:operonGenes "ydfK"@en ; + tawny:name "4560"@en . + bo:16213 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "biphenyl-2,3-diol 1,2-dioxygenase [EC:1.13.11.39]"@en ; rdfs:label "E1.13.11.39"@en ; @@ -113040,14 +113048,6 @@ bo:16213 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00462"@en ; tawny:name "16213"@en . -bo:4560 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydfK"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30800 ; - sybio:operonGenes "ydfK"@en ; - tawny:name "4560"@en . - a owl:Class ; rdfs:comment "The directed movement of trehalose into, out of, within or between cells by means of some external agent such as a transporter or pore. Trehalose is a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.;"@en ; @@ -113238,16 +113238,6 @@ bo:19851 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "19851"@en ; owl:sameAs bo:26482 . -bo:16124 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "phenylalanine-4-hydroxylase [EC:1.14.16.1]"@en ; - rdfs:label "PHHA"@en , "PAH"@en ; - sybio:accession "COG3186"^^xsd:string , "0004505"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16125 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00500"@en ; - tawny:name "16124"@en . - bo:10399 a bo:1503 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU29600;branched-chain amino acid-Na+ symporter"@en , "Branched-chain amino acid transport system carrier protein braB"@en ; rdfs:label "braB"@en , "BSU29600"@en , "BraB"@en ; @@ -113267,6 +113257,26 @@ bo:10399 a bo:1503 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10399"@en . +bo:16124 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "phenylalanine-4-hydroxylase [EC:1.14.16.1]"@en ; + rdfs:label "PHHA"@en , "PAH"@en ; + sybio:accession "COG3186"^^xsd:string , "0004505"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16125 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00500"@en ; + tawny:name "16124"@en . + +bo:25797 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "chlorophenol 4-monooxygenase - reversible"@en ; + rdfs:label "C06600 + 2 C00004 + C00007 <=> C07102 + 2 C00003 + C01328 + C00698"@en , "cpd:C06600 <=> cpd:C06600"@en ; + sybio:accession "RN:R05446"^^xsd:string ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25797"@en . + bo:10487 a sybio:Protein , bo:405 , owl:NamedIndividual ; rdfs:comment "lysine permease;BSU33330"@en , "Putative arginine/ornithine antiporter"@en ; rdfs:label "BSU33330"@en , "yvsH"@en , "LysP"@en , "YvsH"@en ; @@ -113286,15 +113296,17 @@ bo:10487 a sybio:Protein , bo:405 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10487"@en . -bo:25797 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "chlorophenol 4-monooxygenase - reversible"@en ; - rdfs:label "C06600 + 2 C00004 + C00007 <=> C07102 + 2 C00003 + C01328 + C00698"@en , "cpd:C06600 <=> cpd:C06600"@en ; - sybio:accession "RN:R05446"^^xsd:string ; - sybio:catalyzingClass bo:21056 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25797"@en . +bo:25885 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.13.37"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.13.37"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25885"@en . bo:10575 a bo:399 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Antilisterial bacteriocin subtilosin biosynthesis protein albA"@en , "putative antilisterial bacteriocin (subtilosin) production enzyme;BSU37370"@en ; @@ -113314,17 +113326,15 @@ bo:10575 a bo:399 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10575"@en . -bo:25885 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.13.37"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.13.37"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25885"@en . +bo:25973 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label "C05141 + C00003 <=> C05300 + C00004 + C00080"@en , "NAD+ 17-oxidoreductase"@en , "Estriol"@en , " => "@en ; + sybio:accession "RN:R04681"^^xsd:string ; + sybio:catalyzingClass bo:25972 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25973"@en . bo:10663 a sybio:Protein , bo:453 , owl:NamedIndividual ; rdfs:comment "BSU39960;putative integral inner membrane protein"@en , "Uncharacterized protein yxaI"@en ; @@ -113343,16 +113353,6 @@ bo:10663 a sybio:Protein , bo:453 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10663"@en . -bo:25973 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label "C05141 + C00003 <=> C05300 + C00004 + C00080"@en , "NAD+ 17-oxidoreductase"@en , "Estriol"@en , " => "@en ; - sybio:accession "RN:R04681"^^xsd:string ; - sybio:catalyzingClass bo:25972 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25973"@en . - bo:17042 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "1-phosphatidylinositol-5-phosphate 4-kinase [EC:2.7.1.149]"@en ; rdfs:label "E2.7.1.149"@en , "PIP4K"@en ; @@ -113566,22 +113566,6 @@ bo:11492 a bo:559 , owl:NamedIndividual , sybio:Protein ; tawny:name "11492"@en ; owl:sameAs bo:6504 . -bo:11580 a owl:Class , sybio:Pathway , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00250.png"@en ; - rdfs:label "Alanine, aspartate and glutamate metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00250"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11574 , bo:11716 , bo:11637 , bo:11629 , bo:11594 , bo:11635 , bo:11549 , bo:11586 , bo:11714 , bo:11605 , bo:11741 , bo:11646 , bo:11578 , bo:11603 , bo:11734 , bo:11584 , bo:11644 ; - sybio:derivesFrom bo:11581 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00250"@en ; - tawny:name "11580"@en . - bo:30380 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU30510"@en ; rdfs:label "ytpA"@en , "BSU30510"@en ; @@ -113607,6 +113591,22 @@ bo:30380 a owl:NamedIndividual , sybio:CDS ; "1.0"@en ; tawny:name "30380"@en . +bo:11580 a owl:Class , sybio:Pathway , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00250.png"@en ; + rdfs:label "Alanine, aspartate and glutamate metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00250"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11574 , bo:11716 , bo:11637 , bo:11629 , bo:11594 , bo:11635 , bo:11549 , bo:11586 , bo:11714 , bo:11605 , bo:11741 , bo:11646 , bo:11578 , bo:11603 , bo:11734 , bo:11584 , bo:11644 ; + sybio:derivesFrom bo:11581 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00250"@en ; + tawny:name "11580"@en . + bo:26890 a owl:NamedIndividual , sybio:Protein , bo:193 ; rdfs:comment "BSU00750;4-amino-4-deoxychorismate synthase; anthranilate synthase (subunit II);"@en , "Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II;derived protein"@en ; rdfs:label "anthranilate synthase glutamine amidotransferase component II"@en , "para-aminobenzoate"@en , "BSU00750"@en , "TrpG"@en , "TrpX"@en , "pabA"@en , "PabA"@en ; @@ -113661,19 +113661,19 @@ bo:19638 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "methylphosphotriester-DNA methyltransferase"@en , "cytosine 5-methyltransferase"@en , "DNA (cytosine-5-)-methyltransferase"@en , "DNA-cytosine 5-methylase"@en , "type II DNA methylase"@en , "cytosine-specific DNA methyltransferase"@en , "DNA cytosine methylase"@en , "cytosine DNA methyltransferase"@en , "DNA 5-cytosine methylase"@en , "restriction-modification system"@en , "DNA-cytosine methyltransferase"@en , "S-adenosyl-L-methionine:DNA"@en , "deoxyribonucleic acid"@en , "modification methylase"@en , "deoxyribonucleic"@en , "DNA cytosine c5 methylase"@en , "site-specific DNA-methyltransferase"@en , "deoxyribonucleic methylase"@en , "GO:0003886"@en , "cytosine DNA methylase"@en , "DNA cytosine C5 methylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003886"^^xsd:string ; + owl:hasValue "GO:0008326"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.37"^^xsd:string ; + owl:hasValue "2.1.1.73-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.73-RXN"^^xsd:string ; + owl:hasValue "2.1.1.37"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008326"^^xsd:string ; + owl:hasValue "GO:0003886"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -113864,7 +113864,7 @@ bo:10714 a bo:1930 , sybio:Protein , owl:NamedIndividual ; rdfs:label "transcription activator"@en , "GO:0016563"@en , "transcription activating factor"@en , "transcriptional activator"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016563"^^xsd:string ; + owl:hasValue "9388 \"transcription activator activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -113872,7 +113872,7 @@ bo:10714 a bo:1930 , sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "9388 \"transcription activator activity\""^^xsd:string ; + owl:hasValue "GO:0016563"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -113923,15 +113923,15 @@ bo:10802 a owl:NamedIndividual , bo:370 , sybio:Protein ; rdfs:label "dehydrogenase"@en , "GO:0016651"@en , "oxidoreductase activity, acting on NADH or NADPH"@en , "oxidoreductase activity acting on NADH or NADPH other acceptor"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016651"^^xsd:string ; + owl:hasValue "1.6.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4134 \"oxidoreductase activity, acting on NADH or NADPH\""^^xsd:string ; + owl:hasValue "GO:0016651"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.-.-"^^xsd:string ; + owl:hasValue "4134 \"oxidoreductase activity, acting on NADH or NADPH\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114125,24 +114125,6 @@ bo:30167 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "30167"@en . -bo:11367 a sybio:Protein , bo:521 , owl:NamedIndividual ; - rdfs:comment "BSU03640;putative 3-polyprenyl-4-hydroxybenzoate decarboxylase;"@en , "Phenolic acid decarboxylase subunit C"@en ; - rdfs:label "YclC"@en , "BSU03640"@en , "BsdC"@en , "bsdC"@en , "UbiD"@en ; - sybio:AA "MAYQDFREFLAALEKEGQLLTVNEEVKPEPDLGASARAASNLGDKSPALLFNNIYGYHNARIAMNVIGSWPNHAMMLGMPKDTPVKEQFFEFAKRYDQFPMPVKREETAPFHENEITEDINLFDILPLFRINQGDGGYYLDKACVISRDLEDPDNFGKQNVGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAEERGINLPVTIALGCEPVITTAASTPLLYDQSEYEMAGAIQGEPYRIVKSKLSDLDVPWGAEVVLEGEIIAGEREYEGPFGEFTGHYSGGRSMPIIKIKRVYHRNNPIFEHLYLGMPWTECDYMIGINTCVPLYQQLKEAYPNEIVAVNAMYTHGLIAIVSTKTRYGGFAKAVGMRALTTPHGLGYCKMVIVVDEDVDPFNLPQVMWALSTKMHPKHDAVIIPDLSVLPLDPGSNPSGITHKMILDATTPVAPETRGHYSQPLDSPLTTKEWEQKLMDLMNK"@en ; - sybio:accession "BSU03640"^^xsd:string , "P94405"^^xsd:string ; - sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29275 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "53024.69"^^xsd:string ; - sybio:pI "5.261909"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:relatedTo bo:10789 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11367"@en . - bo:26677 a sybio:Protein , bo:1187 , owl:NamedIndividual ; rdfs:comment "Regulatory protein ribR;derived protein"@en , "RNA-binding riboflavin kinase;BSU29300"@en ; rdfs:label "RibR"@en , "ribR"@en , "rbfK"@en , "YtnK"@en , "RbfK"@en , "BSU29300"@en ; @@ -114161,6 +114143,24 @@ bo:26677 a sybio:Protein , bo:1187 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26677"@en . +bo:11367 a sybio:Protein , bo:521 , owl:NamedIndividual ; + rdfs:comment "BSU03640;putative 3-polyprenyl-4-hydroxybenzoate decarboxylase;"@en , "Phenolic acid decarboxylase subunit C"@en ; + rdfs:label "YclC"@en , "BSU03640"@en , "BsdC"@en , "bsdC"@en , "UbiD"@en ; + sybio:AA "MAYQDFREFLAALEKEGQLLTVNEEVKPEPDLGASARAASNLGDKSPALLFNNIYGYHNARIAMNVIGSWPNHAMMLGMPKDTPVKEQFFEFAKRYDQFPMPVKREETAPFHENEITEDINLFDILPLFRINQGDGGYYLDKACVISRDLEDPDNFGKQNVGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAEERGINLPVTIALGCEPVITTAASTPLLYDQSEYEMAGAIQGEPYRIVKSKLSDLDVPWGAEVVLEGEIIAGEREYEGPFGEFTGHYSGGRSMPIIKIKRVYHRNNPIFEHLYLGMPWTECDYMIGINTCVPLYQQLKEAYPNEIVAVNAMYTHGLIAIVSTKTRYGGFAKAVGMRALTTPHGLGYCKMVIVVDEDVDPFNLPQVMWALSTKMHPKHDAVIIPDLSVLPLDPGSNPSGITHKMILDATTPVAPETRGHYSQPLDSPLTTKEWEQKLMDLMNK"@en ; + sybio:accession "BSU03640"^^xsd:string , "P94405"^^xsd:string ; + sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29275 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "53024.69"^^xsd:string ; + sybio:pI "5.261909"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:relatedTo bo:10789 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11367"@en . + bo:6093 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ywbO_terminator"@en ; sybio:NA "AAAAAGCTCTCGATAAAGAGAGCTTTTTTTATTCCTGT"^^xsd:string ; @@ -114198,23 +114198,6 @@ bo:30255 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "30255"@en . -bo:11455 a bo:838 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "UPF0754 membrane protein yheB"@en , "conserved hypothetical protein;BSU09790"@en ; - rdfs:label "YheB"@en , "BSU09790"@en , "yheB"@en ; - sybio:AA "MGIAGTFIFMIVIGAAIGAVTNHLAIQMLFRPYKAYYLFGKRVPFTPGLIPRRRDELAKQMGLMVVNHLLTPEGIKKRLVSDAAKTQALRVGEQLIQKLSLSEVTVKEALEKAGMKRPEKAADAWISSWTDDKLHELFRQYGDQSLKELVPIEVQEKLEEKIPMISGYILSRSVRYFESDEGKIRLGNMIDDFLKERGMLGSMVQLFLGNSSLADRVLPELLKFLRNEETNKLLSDLLKNEWGKLREYTFNEADEKWNAKALIFSLKRRVLQAFSTAPFFNNTIGTLTVRYESELTQQMLPALLDKLLEGISSNLESVLKRLRLEEIVKEQVDQFPVERLEEMVLSISKKEFKMITYLGGLLGGIIGAIQALFVILF"@en ; - sybio:accession "O07543"^^xsd:string , "BSU09790"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32254 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "42906.67"^^xsd:string ; - sybio:pI "8.92437"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:relatedTo bo:6768 , bo:6902 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11455"@en . - bo:26765 a bo:1262 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "ATP phosphoribosyltransferase;derived protein"@en , "BSU34920;ATP phosphoribosyltransferase"@en ; rdfs:label "HisG"@en , "BSU34920"@en , "hisG"@en ; @@ -114234,6 +114217,23 @@ bo:26765 a bo:1262 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26765"@en . +bo:11455 a bo:838 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "UPF0754 membrane protein yheB"@en , "conserved hypothetical protein;BSU09790"@en ; + rdfs:label "YheB"@en , "BSU09790"@en , "yheB"@en ; + sybio:AA "MGIAGTFIFMIVIGAAIGAVTNHLAIQMLFRPYKAYYLFGKRVPFTPGLIPRRRDELAKQMGLMVVNHLLTPEGIKKRLVSDAAKTQALRVGEQLIQKLSLSEVTVKEALEKAGMKRPEKAADAWISSWTDDKLHELFRQYGDQSLKELVPIEVQEKLEEKIPMISGYILSRSVRYFESDEGKIRLGNMIDDFLKERGMLGSMVQLFLGNSSLADRVLPELLKFLRNEETNKLLSDLLKNEWGKLREYTFNEADEKWNAKALIFSLKRRVLQAFSTAPFFNNTIGTLTVRYESELTQQMLPALLDKLLEGISSNLESVLKRLRLEEIVKEQVDQFPVERLEEMVLSISKKEFKMITYLGGLLGGIIGAIQALFVILF"@en ; + sybio:accession "O07543"^^xsd:string , "BSU09790"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32254 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "42906.67"^^xsd:string ; + sybio:pI "8.92437"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:relatedTo bo:6768 , bo:6902 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11455"@en . + bo:6181 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "wapA-yxxG_terminator"@en ; sybio:NA "ATAAAGCTTGTATCGATAAGCGATACAAGCTTTTTTAGAACAAAT"^^xsd:string ; @@ -114393,15 +114393,15 @@ bo:18010 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "phospho-2-keto-3-deoxyheptanoate aldolase"@en , "3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase"@en , "phospho-2-keto-3-deoxyheptonic aldolase"@en , "DS-Co"@en , "phospho-2-dehydro-3-deoxyheptonate aldolase"@en , "phospho-2-oxo-3-deoxyheptonate aldolase"@en , "KDPH synthase"@en , "7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate"@en , "deoxy-D-arabino-heptulosonate-7-phosphate synthetase"@en , "DS-Mn"@en , "7-phospho-2-keto-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase"@en , "2-dehydro-3-deoxy-phosphoheptonate aldolase"@en , "KDPH synthetase"@en , "7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphate lyase"@en , "phosphoenolpyruvate:D-erythrose-4-phosphate"@en , "3-deoxy-7-phosphoheptulonate synthase"@en , "GO:0003849"@en , "DAHP synthase"@en , "phospho-2-keto-3-deoxyheptonate aldolase"@en , "DHAP synthase"@en , "DAH7-P synthase"@en , "D-erythrose-4-phosphate-lyase"@en , "3-deoxy-D-arabino-heptolosonate-7-phosphate synthetase"@en , "2-dehydro-3-deoxyphosphoheptonate aldolase"@en , "3-deoxy-D-arabino-2-heptulosonic acid 7-phosphate synthetase"@en , "2-keto-3-deoxy-D-arabino-heptonic acid 7-phosphate synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DAHPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0003849"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003849"^^xsd:string ; + owl:hasValue "2.5.1.54"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.54"^^xsd:string ; + owl:hasValue "DAHPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114424,19 +114424,19 @@ bo:24044 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "inosinicase"@en , "inosinate cyclohydrolase"@en , "IMP cyclohydrolase"@en , "IMP synthetase"@en , "IMP 1 2-hydrolase"@en , "GO:0003937"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003937"^^xsd:string ; + owl:hasValue "IMPCYCLOHYDROLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.10"^^xsd:string ; + owl:hasValue "12558 \"IMP cyclohydrolase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12558 \"IMP cyclohydrolase activity\""^^xsd:string ; + owl:hasValue "3.5.4.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "IMPCYCLOHYDROLASE-RXN"^^xsd:string ; + owl:hasValue "GO:0003937"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114513,11 +114513,11 @@ bo:5403 a sybio:Operon , owl:NamedIndividual ; rdfs:label "oxidoreductase activity, acting on CH-OH group of donors"@en , "GO:0016614"@en , "oxidoreductase activity acting on the CH-OH group of donors other acceptors"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016614"^^xsd:string ; + owl:hasValue "1.1.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.-.-"^^xsd:string ; + owl:hasValue "GO:0016614"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114724,19 +114724,19 @@ bo:32939 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0004766"@en , "putrescine aminopropyltransferase"@en , "S-adenosylmethioninamine:putrescine 3-aminopropyltransferase"@en , "spermidine synthetase"@en , "spermidine synthase"@en , "aminopropyltransferase"@en , "SpeE"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14296 \"spermidine synthase activity\""^^xsd:string ; + owl:hasValue "2.5.1.16"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004766"^^xsd:string ; + owl:hasValue "SPERMIDINESYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.16"^^xsd:string ; + owl:hasValue "GO:0004766"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SPERMIDINESYN-RXN"^^xsd:string ; + owl:hasValue "14296 \"spermidine synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114748,7 +114748,7 @@ bo:32939 a sybio:CDS , owl:NamedIndividual ; rdfs:label "xanthine-NAD oxidoreductase"@en , "xanthine NAD+ oxidoreductase"@en , "xanthine dehydrogenase"@en , "NAD-xanthine dehydrogenase"@en , "xanthine oxidoreductase"@en , "xanthine:NAD+ oxidoreductase"@en , "GO:0004854"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.17.1.4"^^xsd:string ; + owl:hasValue "GO:0004854"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -114756,7 +114756,7 @@ bo:32939 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004854"^^xsd:string ; + owl:hasValue "1.17.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -114971,11 +114971,11 @@ bo:14968 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "PTS-GAM-EIIB"@en , "AGAB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008982"^^xsd:string ; + owl:hasValue "COG3444"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3444"^^xsd:string ; + owl:hasValue "0008982"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -115257,11 +115257,11 @@ bo:12511 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0004729"@en , "protoporphyrinogen-IX:oxygen oxidoreductase"@en , "oxygen-dependent protoporphyrinogen oxidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004729"^^xsd:string ; + owl:hasValue "PROTOPORGENOXI-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROTOPORGENOXI-RXN"^^xsd:string ; + owl:hasValue "GO:0004729"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -115289,11 +115289,11 @@ bo:12511 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYSTEINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004817"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004817"^^xsd:string ; + owl:hasValue "CYSTEINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -115362,11 +115362,11 @@ bo:15973 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AMIE"@en , "E3.5.1.4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004040"^^xsd:string ; + owl:hasValue "COG0154"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0154"^^xsd:string ; + owl:hasValue "0004040"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -115722,17 +115722,6 @@ bo:7112 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "1423"@en ; tawny:name "7112"@en . -bo:7200 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "YbcK protein"@en ; - rdfs:label "ybcK"@en ; - sybio:accession "O87094"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:locatedIn ; - sybio:taxId "1423"@en ; - tawny:name "7200"@en . - bo:1475 a owl:Class ; rdfs:label "COG1385"@en ; rdfs:subClassOf bo:176 , sybio:COG ; @@ -115744,6 +115733,17 @@ bo:1475 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1475"@en . +bo:7200 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "YbcK protein"@en ; + rdfs:label "ybcK"@en ; + sybio:accession "O87094"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:locatedIn ; + sybio:taxId "1423"@en ; + tawny:name "7200"@en . + bo:1563 a owl:Class ; rdfs:label "COG0181"@en ; rdfs:subClassOf bo:168 , sybio:COG ; @@ -115813,6 +115813,18 @@ bo:15936 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01270"@en ; tawny:name "15936"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid."@en ; + rdfs:label "L-serine metabolism"@en , "L-serine metabolic process"@en , "GO:0006563"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006563"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16678 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "cytosolic tryparedoxin peroxidase, trypanosomatid typical 2-Cysperoxiredoxin [EC:1.11.1.15]"@en ; rdfs:label "TRYP"@en ; @@ -115826,18 +115838,6 @@ bo:16678 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11185+K11186"@en ; tawny:name "16678"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid."@en ; - rdfs:label "L-serine metabolism"@en , "L-serine metabolic process"@en , "GO:0006563"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006563"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:16766 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "cyclomaltodextrinase [EC:3.2.1.54]"@en ; rdfs:label "E3.2.1.54"@en ; @@ -116504,7 +116504,7 @@ bo:4988 a owl:NamedIndividual , sybio:Operon ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006526"^^xsd:string ; + owl:hasValue "ARGININE-SYN4-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -116512,7 +116512,7 @@ bo:4988 a owl:NamedIndividual , sybio:Operon ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARGININE-SYN4-PWY"^^xsd:string ; + owl:hasValue "GO:0006526"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -116848,23 +116848,23 @@ bo:29317 a sybio:CDS , owl:NamedIndividual ; rdfs:label "beta-1 4-N-acetylglucosaminlytransferase"@en , "GO:0050511"@en , "undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase"@en , "undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase"@en , "undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase"@en , "pyrophosphoryl-undecaprenol N-acetylglucosamine transferase"@en , "MurG transferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-9672"^^xsd:string ; + owl:hasValue "2.4.1.227"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050511"^^xsd:string ; + owl:hasValue "RXN-8976"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8976"^^xsd:string ; + owl:hasValue "GO:0050511"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NACGLCTRANS-RXN"^^xsd:string ; + owl:hasValue "RXN-9672"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.227"^^xsd:string ; + owl:hasValue "NACGLCTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -117152,11 +117152,11 @@ bo:18475 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045788"^^xsd:string ; + owl:hasValue "GO:0045789"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045789"^^xsd:string ; + owl:hasValue "GO:0045788"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -117512,6 +117512,17 @@ bo:10292 a bo:247 , owl:NamedIndividual , bo:602 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "10292"@en . +bo:25690 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "zeta-carotene desaturas(CrtI,Al-1,CrtQ/Zds) - reversible"@en ; + rdfs:label "Neurosporene, hydrogen-donor"@en , "C05431 + C00030 + C00007 <=> C05432 + C00028 + 2 C00001"@en , "oxygen oxidoreductase"@en , "cpd:C05431 <=> cpd:C05431"@en ; + sybio:accession "RN:R04800"^^xsd:string ; + sybio:catalyzedBy bo:18508 , bo:18511 , bo:18505 ; + sybio:catalyzingClass bo:25691 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25690"@en . + bo:10380 a sybio:Protein , owl:NamedIndividual , bo:299 ; rdfs:comment "Uncharacterized tRNA/rRNA methyltransferase ysgA"@en , "putative RNA methylase;BSU28650"@en ; rdfs:label "ysgA"@en , "BSU28650"@en , "YsgA"@en ; @@ -117530,17 +117541,6 @@ bo:10380 a sybio:Protein , owl:NamedIndividual , bo:299 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10380"@en . -bo:25690 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "zeta-carotene desaturas(CrtI,Al-1,CrtQ/Zds) - reversible"@en ; - rdfs:label "Neurosporene, hydrogen-donor"@en , "C05431 + C00030 + C00007 <=> C05432 + C00028 + 2 C00001"@en , "oxygen oxidoreductase"@en , "cpd:C05431 <=> cpd:C05431"@en ; - sybio:accession "RN:R04800"^^xsd:string ; - sybio:catalyzedBy bo:18508 , bo:18511 , bo:18505 ; - sybio:catalyzingClass bo:25691 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25690"@en . - bo:6697 a sybio:TF , owl:NamedIndividual ; rdfs:label "BSU02090"@en ; sybio:accession "BSU02090"^^xsd:string ; @@ -118045,6 +118045,17 @@ bo:10079 a owl:NamedIndividual , sybio:Protein , bo:618 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10079"@en . +bo:25477 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "brassinosteroid C23alpha-hydroxylase"@en , "C15798 + C00007 <=> C15799 + C00001"@en , "6-Deoxocathasterone"@en , "cpd:C15799 <=> cpd:C15799"@en ; + sybio:accession "RN:R07448"^^xsd:string ; + sybio:catalyzedBy bo:18550 , bo:18547 ; + sybio:catalyzingClass bo:19300 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25477"@en . + bo:10167 a owl:NamedIndividual , sybio:Protein , bo:462 ; rdfs:comment "putative oxido-reductase;BSU18500"@en , "Uncharacterized oxidoreductase yoxD"@en ; rdfs:label "yoxD"@en , "YoxD"@en , "BSU18500"@en ; @@ -118063,16 +118074,15 @@ bo:10167 a owl:NamedIndividual , sybio:Protein , bo:462 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10167"@en . -bo:25477 a sybio:Reaction , owl:NamedIndividual ; +bo:25565 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; - rdfs:label "brassinosteroid C23alpha-hydroxylase"@en , "C15798 + C00007 <=> C15799 + C00001"@en , "6-Deoxocathasterone"@en , "cpd:C15799 <=> cpd:C15799"@en ; - sybio:accession "RN:R07448"^^xsd:string ; - sybio:catalyzedBy bo:18550 , bo:18547 ; - sybio:catalyzingClass bo:19300 ; + rdfs:label " <=> "@en , "C00001 + G00010 <=> C00031 + G00011"@en ; + sybio:accession "RN:R05981"^^xsd:string ; + sybio:catalyzingClass bo:25566 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25477"@en . + tawny:name "25565"@en . bo:10255 a sybio:Protein , owl:NamedIndividual , bo:1202 ; rdfs:comment "putative metal-dependent phosphohydrolase;BSU21890"@en , "Uncharacterized protein ypgQ"@en ; @@ -118091,16 +118101,6 @@ bo:10255 a sybio:Protein , owl:NamedIndividual , bo:1202 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10255"@en . -bo:25565 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label " <=> "@en , "C00001 + G00010 <=> C00031 + G00011"@en ; - sybio:accession "RN:R05981"^^xsd:string ; - sybio:catalyzingClass bo:25566 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25565"@en . - bo:25653 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "G10616 + G00110 <=> G10621 + G00111"@en , "gl:G00110 <=> gl:G00110"@en ; @@ -118351,7 +118351,7 @@ bo:4203 a sybio:PositivelyRegulatedOperator , sybio:Operator owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000104"^^xsd:string ; + owl:hasValue "1.3.99.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -118359,30 +118359,12 @@ bo:4203 a sybio:PositivelyRegulatedOperator , sybio:Operator owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.99.1"^^xsd:string ; + owl:hasValue "GO:0000104"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:11084 a sybio:Protein , owl:NamedIndividual , bo:565 ; - rdfs:comment "BSU35690;poly(glucosyl N-acetylgalactosamine 1-phosphate) glucosyltransferase"@en , "Minor teichoic acid biosynthesis protein ggaA"@en ; - rdfs:label "BSU35690"@en , "GgaA"@en , "ggaA"@en ; - sybio:AA "MFSIIIPIYNSENYLRYSIESVLNQSIGFKENIELILIDDGSVDSSPQICESFKNLYPNNIKIMKIENSGPSAARNCGLSNVSERSKFIGFLDSDDAFSQNALQSVYDFFCDSEHVNIAVLPVYYTGEKEGGHKLNNRFEKGTRVINILNDYKAIHFYIGGTFYRRHTLTSTVLFDESIKFWEDAIFFNQLLLKEKRYGAVAEGKYFYRKRKEQDSLVDRSWFNKKRYTYLLNECYMTLLMDSFNKYDIVLPYLQFLIVYHIKLFLYPNYRDVYKSVLDQQEQRVFVDDFIKVLKFIDPQFIKEQDMPMYYKEFMFHLLKENTEALENIKKERVLHSSCTVTSAKIKGLRLELTGHFINQYYEMKENDRIYIKYFKRLKKCKRKELKKTIEVWGYKLRDFRYAGFVVEIPIWAFAFDFVLKTPNDSLELNHVNIFKSLLTRVFKKR"@en ; - sybio:accession "P46917"^^xsd:string , "BSU35690"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32113 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:localisation "8 : Secreted"^^xsd:string ; - sybio:molecularWeight "53146.365"^^xsd:string ; - sybio:pI "8.963676"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11140 , bo:11143 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11084"@en . - bo:26394 a bo:1231 , owl:NamedIndividual , sybio:Protein , bo:1230 ; rdfs:comment "Transketolase;derived protein"@en , "transketolase;BSU17890"@en ; rdfs:label "BSU17890"@en , "tkt"@en , "Tkt"@en , "TktA"@en ; @@ -118402,21 +118384,23 @@ bo:26394 a bo:1231 , owl:NamedIndividual , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "26394"@en . -bo:11172 a owl:NamedIndividual , sybio:Protein , bo:835 ; - rdfs:comment "phosphate starvation protein (universal stress protein A family);BSU39250;"@en , "Uncharacterized protein yxiE"@en ; - rdfs:label "yxiE"@en , "BSU39250"@en , "YxiE"@en ; - sybio:AA "MFNKMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR"@en ; - sybio:accession "P42297"^^xsd:string , "BSU39250"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; +bo:11084 a sybio:Protein , owl:NamedIndividual , bo:565 ; + rdfs:comment "BSU35690;poly(glucosyl N-acetylgalactosamine 1-phosphate) glucosyltransferase"@en , "Minor teichoic acid biosynthesis protein ggaA"@en ; + rdfs:label "BSU35690"@en , "GgaA"@en , "ggaA"@en ; + sybio:AA "MFSIIIPIYNSENYLRYSIESVLNQSIGFKENIELILIDDGSVDSSPQICESFKNLYPNNIKIMKIENSGPSAARNCGLSNVSERSKFIGFLDSDDAFSQNALQSVYDFFCDSEHVNIAVLPVYYTGEKEGGHKLNNRFEKGTRVINILNDYKAIHFYIGGTFYRRHTLTSTVLFDESIKFWEDAIFFNQLLLKEKRYGAVAEGKYFYRKRKEQDSLVDRSWFNKKRYTYLLNECYMTLLMDSFNKYDIVLPYLQFLIVYHIKLFLYPNYRDVYKSVLDQQEQRVFVDDFIKVLKFIDPQFIKEQDMPMYYKEFMFHLLKENTEALENIKKERVLHSSCTVTSAKIKGLRLELTGHFINQYYEMKENDRIYIKYFKRLKKCKRKELKKTIEVWGYKLRDFRYAGFVVEIPIWAFAFDFVLKTPNDSLELNHVNIFKSLLTRVFKKR"@en ; + sybio:accession "P46917"^^xsd:string , "BSU35690"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31874 ; + sybio:encodedBy bo:32113 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "15941.775"^^xsd:string ; - sybio:pI "6.330452"^^xsd:string ; - sybio:productType "f : factor"^^xsd:string ; + sybio:hasFunction , ; + sybio:localisation "8 : Secreted"^^xsd:string ; + sybio:molecularWeight "53146.365"^^xsd:string ; + sybio:pI "8.963676"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11140 , bo:11143 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11172"@en . + tawny:name "11084"@en . bo:26482 a bo:1394 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Diaminopimelate decarboxylase;derived protein"@en , "BSU23380;diaminopimelate decarboxylase"@en ; @@ -118436,13 +118420,29 @@ bo:26482 a bo:1394 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26482"@en . +bo:11172 a owl:NamedIndividual , sybio:Protein , bo:835 ; + rdfs:comment "phosphate starvation protein (universal stress protein A family);BSU39250;"@en , "Uncharacterized protein yxiE"@en ; + rdfs:label "yxiE"@en , "BSU39250"@en , "YxiE"@en ; + sybio:AA "MFNKMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR"@en ; + sybio:accession "P42297"^^xsd:string , "BSU39250"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31874 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "15941.775"^^xsd:string ; + sybio:pI "6.330452"^^xsd:string ; + sybio:productType "f : factor"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11172"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: tartrate + NAD+ = oxaloglycolate + NADH + H+."@en ; rdfs:label "GO:0009027"@en , "tartrate dehydrogenase"@en , "tartrate:NAD+ oxidoreductase"@en , "mesotartrate dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.93"^^xsd:string ; + owl:hasValue "TARTRATE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -118450,7 +118450,7 @@ bo:26482 a bo:1394 , sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TARTRATE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.1.1.93"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -118481,26 +118481,6 @@ bo:30060 a owl:NamedIndividual , sybio:CDS ; "29.0"@en ; tawny:name "30060"@en . -bo:11260 a owl:NamedIndividual , sybio:Protein , bo:273 ; - rdfs:comment "BSU33660;transcriptional repressor"@en , "HTH-type transcriptional repressor rghR;"@en ; - rdfs:label "rghR"@en , "RghRA"@en , "YvaN"@en , "BSU33660"@en , "RghR"@en ; - sybio:AA "MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHYFSFISDEAKKRSADD"@en ; - sybio:accession "BSU33660"^^xsd:string , "O32236"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:32069 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "4.4 : Phage-related functions"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "15445.1"^^xsd:string ; - sybio:pI "6.220757"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:relatedTo bo:11187 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11260"@en ; - owl:sameAs bo:2673 , bo:6739 . - bo:26570 a bo:567 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Acetolactate synthase large subunit;derived protein"@en , "BSU28310;acetolactate synthase (acetohydroxy-acid synthase) (large subunit)"@en ; rdfs:label "ilvB"@en , "IlvB"@en , "BSU28310"@en ; @@ -118521,6 +118501,26 @@ bo:26570 a bo:567 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26570"@en . +bo:11260 a owl:NamedIndividual , sybio:Protein , bo:273 ; + rdfs:comment "BSU33660;transcriptional repressor"@en , "HTH-type transcriptional repressor rghR;"@en ; + rdfs:label "rghR"@en , "RghRA"@en , "YvaN"@en , "BSU33660"@en , "RghR"@en ; + sybio:AA "MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHYFSFISDEAKKRSADD"@en ; + sybio:accession "BSU33660"^^xsd:string , "O32236"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:32069 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "4.4 : Phage-related functions"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "15445.1"^^xsd:string ; + sybio:pI "6.220757"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:relatedTo bo:11187 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11260"@en ; + owl:sameAs bo:2673 , bo:6739 . + bo:31739 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU36360"@en ; rdfs:label "BSU36360"@en , "mscL"@en , "ywpC"@en ; @@ -119188,11 +119188,11 @@ bo:14773 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "LYXK"@en , "E2.7.1.53"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008744"^^xsd:string ; + owl:hasValue "COG1070"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1070"^^xsd:string ; + owl:hasValue "0008744"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -119324,7 +119324,7 @@ bo:13819 a owl:NamedIndividual , sybio:Compound ; rdfs:label "acetylglutamic synthetase"@en , "2-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase"@en , "acetylornithinase"@en , "GO:0004358"@en , "ornithine transacetylase"@en , "ornithine acetyltransferase"@en , "acetylornithine glutamate acetyltransferase"@en , "glutamate N-acetyltransferase"@en , "alpha-N-acetyl-L-ornithine:L-glutamate N-acetyltransferase"@en , "N-acetylglutamate synthase"@en , "N-acetylglutamate synthetase"@en , "acetylglutamate-acetylornithine transacetylase"@en , "N-acetyl-L-glutamate synthetase"@en , "acetylglutamate synthetase"@en , "glutamate acetyltransferase"@en , "acetylglutamic-acetylornithine transacetylase"@en , "N2-acetyl-L-ornithine:L-glutamate N-acetyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004358"^^xsd:string ; + owl:hasValue "GLUTAMATE-N-ACETYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -119332,7 +119332,7 @@ bo:13819 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTAMATE-N-ACETYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004358"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -119398,18 +119398,18 @@ bo:2996 a sybio:Promoter , owl:NamedIndividual , sybio:Re a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate."@en ; - rdfs:label "2-lysophosphatidylcholine acylhydrolase"@en , "lysophosphatidylcholine hydrolase"@en , "lysophospholipase A1"@en , "lysophosphatidase"@en , "GO:0004622"@en , "lysophopholipase L2"@en , "lysophospholipase"@en , "phospholipase B"@en , "lecithinase B"@en , "lecitholipase"@en , "lysolecithinase"@en , "phosphatidase B"@en ; + rdfs:label "2-lysophosphatidylcholine acylhydrolase"@en , "lysophosphatidylcholine hydrolase"@en , "lysophospholipase A1"@en , "GO:0004622"@en , "lysophosphatidase"@en , "lysophopholipase L2"@en , "lysophospholipase"@en , "phospholipase B"@en , "lecithinase B"@en , "lecitholipase"@en , "lysolecithinase"@en , "phosphatidase B"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "LYSOPHOSPHOLIPASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004622"^^xsd:string ; + owl:hasValue "GO:0045126"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045126"^^xsd:string ; + owl:hasValue "GO:0004622"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -119614,11 +119614,11 @@ bo:14824 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.7.7.13"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004475"^^xsd:string ; + owl:hasValue "COG1208"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1208"^^xsd:string ; + owl:hasValue "0004475"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -119843,11 +119843,11 @@ bo:15565 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "ECTA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0454"^^xsd:string ; + owl:hasValue "0033816"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033816"^^xsd:string ; + owl:hasValue "COG0454"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -119885,6 +119885,16 @@ bo:16395 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821"@en ; tawny:name "16395"@en . +bo:28066 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yfnH_RBS"@en ; + sybio:NA "CATAGAGATGAGGGGTAGAG"^^xsd:string ; + sybio:begin "798449"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "798468"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31027 ; + tawny:name "28066"@en . + bo:16483 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "cyclohexadienyl dehydrogenase [EC:1.3.1.43]"@en ; rdfs:label "TYRC"@en , "E1.3.1.43"@en ; @@ -119898,16 +119908,6 @@ bo:16483 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00220"@en ; tawny:name "16483"@en . -bo:28066 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yfnH_RBS"@en ; - sybio:NA "CATAGAGATGAGGGGTAGAG"^^xsd:string ; - sybio:begin "798449"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "798468"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31027 ; - tawny:name "28066"@en . - bo:16571 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "phosphoenolpyruvate phosphomutase [EC:5.4.2.9]"@en ; rdfs:label "E5.4.2.9"@en ; @@ -120159,7 +120159,7 @@ bo:21739 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "alpha,alpha-phosphotrehalase"@en , "GO:0008788"@en , "trehalose-6-phosphate hydrolase"@en , "alpha alpha-trehalose-6-phosphate phosphoglucohydrolase"@en , "phosphotrehalase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRE6PHYDRO-RXN"^^xsd:string ; + owl:hasValue "3.2.1.93"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -120167,7 +120167,7 @@ bo:21739 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.93"^^xsd:string ; + owl:hasValue "TRE6PHYDRO-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -120296,6 +120296,14 @@ bo:16358 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11821"@en ; tawny:name "16358"@en . +bo:4793 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "glpFK"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31153 , bo:28622 ; + sybio:operonGenes "glpF,glpK"@en ; + tawny:name "4793"@en . + bo:16446 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "coumermycin A biosynthesis protein CouP"@en ; rdfs:label "COUP"@en ; @@ -120306,14 +120314,6 @@ bo:16446 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12727"@en ; tawny:name "16446"@en . -bo:4793 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "glpFK"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31153 , bo:28622 ; - sybio:operonGenes "glpF,glpK"@en ; - tawny:name "4793"@en . - bo:28029 a sybio:RBS , owl:NamedIndividual ; rdfs:label "phrC_RBS"@en ; sybio:NA "ACAAAGGAGTGAAGGTTTGT"^^xsd:string ; @@ -120324,19 +120324,6 @@ bo:28029 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:30850 ; tawny:name "28029"@en . -bo:16534 a owl:NamedIndividual , owl:Class , sybio:KOEN ; - rdfs:comment "peptide synthetase PhsA"@en ; - rdfs:label "K12911"@en , "PHSA"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q56170"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12911"@en ; - tawny:name "16534"@en . - bo:4881 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "med-comZ_terminator"@en ; sybio:NA "AAGAAGCCACTTTTTTGAAAGTGGCTTTTCACATGATTTT"^^xsd:string ; @@ -120359,6 +120346,19 @@ bo:28117 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28116 ; tawny:name "28117"@en . +bo:16534 a owl:NamedIndividual , owl:Class , sybio:KOEN ; + rdfs:comment "peptide synthetase PhsA"@en ; + rdfs:label "K12911"@en , "PHSA"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q56170"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12911"@en ; + tawny:name "16534"@en . + bo:16622 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "prunasin beta-glucosidase [EC:3.2.1.118]"@en ; rdfs:label "PH"@en ; @@ -120569,18 +120569,6 @@ bo:298 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "298"@en . -bo:20111 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from gene annotation"@en ; - rdfs:label "1.2.1.8"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.8"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "20111"@en . - bo:10896 a sybio:Protein , bo:511 , owl:NamedIndividual ; rdfs:comment "BSU05290;putative transcriptional regulator"@en , "Uncharacterized HTH-type transcriptional regulator ydeP"@en ; rdfs:label "ydeP"@en , "BSU05290"@en , "YdeP"@en ; @@ -120600,6 +120588,18 @@ bo:10896 a sybio:Protein , bo:511 , owl:NamedIndividual ; tawny:name "10896"@en ; owl:sameAs bo:2642 . +bo:20111 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from gene annotation"@en ; + rdfs:label "1.2.1.8"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.1.8"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "20111"@en . + bo:17275 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "sialidase-1 [EC:3.2.1.18]"@en ; rdfs:label "NEU1"@en ; @@ -120667,32 +120667,21 @@ bo:17363 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01571+K01572+K01573"@en ; tawny:name "17363"@en . -bo:474 a owl:Class ; - rdfs:label "COG1473"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1473"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "474"@en . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: 2,3,4,5-tetrahydrodipicolinate + NADP+ = 2,3-dihydrodipicolinate + NADPH + H+.;"@en ; - rdfs:label "GO:0008839"@en , "dihydrodipicolinic acid reductase"@en , "dihydrodipicolinate reductase"@en , "2 3 4 oxidoreductase"@en ; + rdfs:label "GO:0008839"@en , "dihydrodipicolinate reductase"@en , "dihydrodipicolinic acid reductase"@en , "2 3 4 oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008839"^^xsd:string ; + owl:hasValue "1.3.1.26"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIHYDROPICRED-RXN"^^xsd:string ; + owl:hasValue "GO:0008839"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.26"^^xsd:string ; + owl:hasValue "DIHYDROPICRED-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -120709,6 +120698,17 @@ bo:1206 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1206"@en . +bo:474 a owl:Class ; + rdfs:label "COG1473"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1473"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "474"@en . + bo:17451 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "benzene 1,2-dioxygenase [EC:1.14.12.3]"@en ; rdfs:label "E1.14.12.3"@en ; @@ -120719,17 +120719,6 @@ bo:17451 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03268"@en ; tawny:name "17451"@en . -bo:562 a owl:Class ; - rdfs:label "COG2199"@en ; - rdfs:subClassOf bo:210 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2199"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "562"@en . - bo:29034 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU28790"@en , "ribulokinase (EC:2.7.1.16)"@en ; rdfs:label "BSU28790"@en , "araB"@en ; @@ -120766,11 +120755,11 @@ bo:29034 a owl:NamedIndividual , sybio:CDS ; rdfs:label "altronate hydrolase"@en , "mannonic hydrolase"@en , "D-mannonate hydro-lyase"@en , "mannonate hydrolyase"@en , "D-mannonate hydrolyase"@en , "GO:0008927"@en , "mannonate dehydratase"@en , "altronic hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008927"^^xsd:string ; + owl:hasValue "4.2.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.8"^^xsd:string ; + owl:hasValue "GO:0008927"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -120780,16 +120769,16 @@ bo:29034 a owl:NamedIndividual , sybio:CDS ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23397 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "Acetylation is non specific. - irreversible"@en ; - rdfs:label "C00461 + n C00001 <=> C00734 + n C00033"@en , "Chitin amidohydrolase"@en , "cpd:C00461 => cpd:C00461"@en ; - sybio:accession "RN:R02333"^^xsd:string ; - sybio:catalyzedBy bo:16795 ; - sybio:catalyzingClass bo:23398 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11652 ; - tawny:name "23397"@en . +bo:562 a owl:Class ; + rdfs:label "COG2199"@en ; + rdfs:subClassOf bo:210 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG2199"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "562"@en . bo:29122 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU11060"@en ; @@ -120806,6 +120795,17 @@ bo:29122 a sybio:CDS , owl:NamedIndividual ; "17.0"@en ; tawny:name "29122"@en . +bo:23397 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "Acetylation is non specific. - irreversible"@en ; + rdfs:label "C00461 + n C00001 <=> C00734 + n C00033"@en , "Chitin amidohydrolase"@en , "cpd:C00461 => cpd:C00461"@en ; + sybio:accession "RN:R02333"^^xsd:string ; + sybio:catalyzedBy bo:16795 ; + sybio:catalyzingClass bo:23398 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11652 ; + tawny:name "23397"@en . + bo:650 a owl:Class ; rdfs:label "COG0533"@en ; rdfs:subClassOf bo:173 , sybio:COG ; @@ -120827,27 +120827,16 @@ bo:650 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047480"^^xsd:string ; + owl:hasValue "6.3.2.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.10"^^xsd:string ; + owl:hasValue "GO:0047480"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23485 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "C03692 + C00052 <=> C06037 + C00015"@en , "cpd:C03692 => cpd:C03692"@en ; - sybio:accession "RN:R04469"^^xsd:string ; - sybio:catalyzedBy bo:16957 ; - sybio:catalyzingClass bo:23486 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11660 ; - tawny:name "23485"@en . - bo:29210 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01400;;"@en ; rdfs:label "rpmJ"@en , "BSU01400"@en , "rpmX"@en ; @@ -120873,6 +120862,17 @@ bo:29210 a sybio:CDS , owl:NamedIndividual ; "2069.0"@en ; tawny:name "29210"@en . +bo:23485 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "C03692 + C00052 <=> C06037 + C00015"@en , "cpd:C03692 => cpd:C03692"@en ; + sybio:accession "RN:R04469"^^xsd:string ; + sybio:catalyzedBy bo:16957 ; + sybio:catalyzingClass bo:23486 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11660 ; + tawny:name "23485"@en . + bo:32 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "ribosomal RNA-16S"@en ; rdfs:label "RrnI-16S"@en , "BSU_rRNA_23"@en ; @@ -120922,19 +120922,19 @@ bo:4668 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "pyrimidine metabolic process"@en , "pyrimidine base metabolism"@en , "pyrimidine metabolism"@en , "GO:0006206"@en , "pyrimidine base metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552099 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "547507 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487326 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "73848 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599588 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "557683 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526176 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "600546 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -120942,79 +120942,79 @@ bo:4668 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595287 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "585768 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469607 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "507277 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557683 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "568301 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73848 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "552099 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602399 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "597285 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585768 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "581503 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547507 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "536445 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598091 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "517297 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542143 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "598091 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517297 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "448477 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581503 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "487326 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597285 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "GO:0006206"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507277 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "599588 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536445 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "531066 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531066 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "469607 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600546 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "602399 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568301 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "526176 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006206"^^xsd:string ; + owl:hasValue "595287 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448477 \"Pyrimidine metabolism\""^^xsd:string ; + owl:hasValue "542143 \"Pyrimidine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -121312,11 +121312,11 @@ bo:437 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016003"^^xsd:string ; + owl:hasValue "GO:0016884"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016884"^^xsd:string ; + owl:hasValue "GO:0016003"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -121357,7 +121357,7 @@ bo:525 a owl:Class ; rdfs:label "glycerophosphotransferase"@en , "CGPTase"@en , "teichoic acid glycerol transferase"@en , "teichoic-acid synthase"@en , "polymerase"@en , "cytidine diphosphoglycerol glycerophosphotransferase"@en , "glycerophosphate synthetase"@en , "GO:0047355"@en , "CDPglycerol glycerophosphotransferase"@en , "CDP-glycerol glycerophosphotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047355"^^xsd:string ; + owl:hasValue "2.7.8.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -121365,7 +121365,7 @@ bo:525 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.12"^^xsd:string ; + owl:hasValue "GO:0047355"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -121496,17 +121496,6 @@ bo:4807 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "lytE"@en ; tawny:name "4807"@en . -bo:11688 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00631"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00631"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11688"@en . - bo:30488 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU33290;"@en ; rdfs:label "fhuC"@en , "BSU33290"@en ; @@ -121555,6 +121544,17 @@ bo:26998 a bo:401 , bo:302 , owl:NamedIndividual , bo:743 tawny:name "26998"@en ; owl:sameAs bo:6812 . +bo:11688 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00631"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00631"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11688"@en . + bo:18067 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "adenosylcobinamide kinase / adenosylcobinamide-phosphateguanylyltransferase [EC:2.7.1.156 2.7.7.62]"@en ; rdfs:label "COBU"@en , "COBP"@en ; @@ -121720,11 +121720,11 @@ bo:18331 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.7.99.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050418"^^xsd:string ; + owl:hasValue "COG1151"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1151"^^xsd:string ; + owl:hasValue "0050418"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -121841,7 +121841,7 @@ bo:5636 a sybio:Operon , owl:NamedIndividual ; rdfs:label "1-aminocyclopropane-1-carboxylate synthase"@en , "ACC synthase"@en , "L-VG deaminase"@en , "1-aminocyclopropane-1-carboxylate synthetase"@en , "S-adenosyl-L-methionine methylthioadenosine-lyase"@en , "aminocyclopropanecarboxylic acid synthase"@en , "aminocyclopropanecarboxylate synthase"@en , "L-vinylglycine deaminase"@en , "1-aminocyclopropane-1-carboxylic acid synthase"@en , "GO:0016847"@en , "1-aminocyclopropanecarboxylate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.14-RXN"^^xsd:string ; + owl:hasValue "GO:0016847"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -121849,11 +121849,11 @@ bo:5636 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0034100"^^xsd:string ; + owl:hasValue "4.4.1.14-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016847"^^xsd:string ; + owl:hasValue "GO:0034100"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -122034,6 +122034,18 @@ bo:6289 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ppaC"@en ; tawny:name "6289"@en . +bo:25370 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.69"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.69"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25370"@en . + bo:10060 a bo:582 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Putative rhomboid protease ydcA"@en , "conserved hypothetical protein;BSU04610"@en ; rdfs:label "YdcA"@en , "ydcA"@en , "BSU04610"@en ; @@ -122051,18 +122063,6 @@ bo:10060 a bo:582 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10060"@en . -bo:25370 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.69"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.69"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25370"@en . - bo:6377 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ybgJ-ybgH_terminator"@en ; sybio:NA "CATAAGAAAAGGGTGTTCAGACATATGGGCTGAACACCTTTCTCTTTTTGCGT"^^xsd:string ; @@ -122335,16 +122335,6 @@ bo:31368 a owl:NamedIndividual , sybio:CDS ; "53.0"@en ; tawny:name "31368"@en . -bo:27878 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "cotC_RBS"@en ; - sybio:NA "AAAATAAAGGAGGAGTATAT"^^xsd:string ; - sybio:begin "1905215"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1905196"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28909 ; - tawny:name "27878"@en . - bo:12568 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C7H12NO8P"@en ; rdfs:label "N-Acetyl-L-glutamyl 5-phosphate"@en , "N-Acetyl-L-glutamate 5-phosphate"@en , "C7H12NO8P"@en ; @@ -122356,6 +122346,16 @@ bo:12568 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C04133"@en ; tawny:name "12568"@en . +bo:27878 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "cotC_RBS"@en ; + sybio:NA "AAAATAAAGGAGGAGTATAT"^^xsd:string ; + sybio:begin "1905215"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1905196"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28909 ; + tawny:name "27878"@en . + bo:7294 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "BioA"@en ; rdfs:label "Q4U4Z6"@en ; @@ -123035,16 +123035,6 @@ bo:31419 a sybio:CDS , owl:NamedIndividual ; "21.0"@en ; tawny:name "31419"@en . -bo:27929 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "lrpC_RBS"@en ; - sybio:NA "CAAAAAAGAAGGATGTTGAA"^^xsd:string ; - sybio:begin "476039"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "476058"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30691 ; - tawny:name "27929"@en . - bo:12619 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C6H9N3O"@en ; rdfs:label "C6H9N3O"@en , "L-Histidinal"@en ; @@ -123056,6 +123046,16 @@ bo:12619 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01929"@en ; tawny:name "12619"@en . +bo:27929 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "lrpC_RBS"@en ; + sybio:NA "CAAAAAAGAAGGATGTTGAA"^^xsd:string ; + sybio:begin "476039"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "476058"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30691 ; + tawny:name "27929"@en . + bo:7345 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Sensor protein"@en ; rdfs:label "eriK"@en ; @@ -123310,15 +123310,15 @@ bo:13536 a sybio:Compound , owl:NamedIndividual ; rdfs:label "biotin carboxylase"@en , "biotin-carboxyl-carrier-protein:carbon-dioxide ligase"@en , "GO:0004075"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004075"^^xsd:string ; + owl:hasValue "BIOTIN-CARBOXYL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.14"^^xsd:string ; + owl:hasValue "GO:0004075"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BIOTIN-CARBOXYL-RXN"^^xsd:string ; + owl:hasValue "6.3.4.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -123833,11 +123833,11 @@ bo:27042 a owl:NamedIndividual , sybio:MicroarrayExperimen rdfs:label "chemotaxis"@en , "GO:0006935"@en , "taxis in response to chemical stimulus"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006935"^^xsd:string ; + owl:hasValue "Chemotaxis"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Chemotaxis"^^xsd:string ; + owl:hasValue "GO:0006935"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -123893,15 +123893,15 @@ bo:28809 a sybio:CDS , owl:NamedIndividual ; rdfs:label "allantoinase"@en , "GO:0004038"@en , "amidohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004038"^^xsd:string ; + owl:hasValue "ALLANTOINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.5"^^xsd:string ; + owl:hasValue "GO:0004038"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALLANTOINASE-RXN"^^xsd:string ; + owl:hasValue "3.5.2.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -123925,19 +123925,19 @@ bo:21581 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "cytidine deaminase"@en , "cytidine aminohydrolase"@en , "GO:0004126"@en , "cytosine nucleoside deaminase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.5"^^xsd:string ; + owl:hasValue "GO:0004126"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8270 \"cytidine deaminase activity\""^^xsd:string ; + owl:hasValue "CYTIDEAM2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYTIDEAM2-RXN"^^xsd:string ; + owl:hasValue "8270 \"cytidine deaminase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004126"^^xsd:string ; + owl:hasValue "3.5.4.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -124068,7 +124068,7 @@ bo:20627 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0050568"@en , "destabilase"@en , "glutaminylpeptide glutaminase"@en , "peptidylglutaminase II"@en , "peptidoglutaminase II"@en , "protein-L-glutamine amidohydrolase"@en , "protein-glutamine glutaminase"@en , "glutaminyl-peptide glutaminase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CHEBDEAMID-RXN"^^xsd:string ; + owl:hasValue "GO:0050568"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -124076,7 +124076,7 @@ bo:20627 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050568"^^xsd:string ; + owl:hasValue "CHEBDEAMID-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -124590,16 +124590,6 @@ bo:22197 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22197"@en . -bo:22285 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "C00002 + C02835 + C00119 + C00001 <=> C00008 + C00009 + C04437 +C00013"@en , "Imidazole-4-acetate"@en , "5-phosphoribosyl-diphosphate ligase (ADP- andpyrophosphate- forming)"@en , "cpd:C02835 => cpd:C02835"@en ; - sybio:accession "RN:R04068"^^xsd:string ; - sybio:catalyzingClass bo:22286 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11605 ; - tawny:name "22285"@en . - bo:28010 a sybio:Shim , owl:NamedIndividual ; rdfs:label "spoIVCA_RBS_upstream"@en ; sybio:NA "TGATGCATTTTATGAAAGTGATAATCATCGAGGGACCGCAAGCTGACAAATGCATTAACGATTGCTATCATTATTTAATAAAACT"^^xsd:string ; @@ -124610,6 +124600,16 @@ bo:28010 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28009 ; tawny:name "28010"@en . +bo:22285 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "C00002 + C02835 + C00119 + C00001 <=> C00008 + C00009 + C04437 +C00013"@en , "Imidazole-4-acetate"@en , "5-phosphoribosyl-diphosphate ligase (ADP- andpyrophosphate- forming)"@en , "cpd:C02835 => cpd:C02835"@en ; + sybio:accession "RN:R04068"^^xsd:string ; + sybio:catalyzingClass bo:22286 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11605 ; + tawny:name "22285"@en . + bo:22373 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.13.11.29"@en ; @@ -124777,11 +124777,11 @@ bo:17080 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "APPA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008707"^^xsd:string ; + owl:hasValue "0003993"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003993"^^xsd:string ; + owl:hasValue "0008707"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -124838,11 +124838,11 @@ bo:18847 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PIGM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT50"^^xsd:string ; + owl:hasValue "0000030"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000030"^^xsd:string ; + owl:hasValue "GT50"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -124865,11 +124865,11 @@ bo:15208 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "IUNH"@en , "E3.2.2.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1957"^^xsd:string ; + owl:hasValue "0008477"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008477"^^xsd:string ; + owl:hasValue "COG1957"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -124928,6 +124928,18 @@ bo:4473 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ycxC,ycxB"@en ; tawny:name "4473"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate."@en ; + rdfs:label "UDP-glucose metabolic process"@en , "GO:0006011"@en , "UDP-glucose metabolism"@en ; + rdfs:subClassOf sybio:BiologicalProcess , , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006011"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: L-alanine + H2O + NAD+ = pyruvate + NH3 + NADH + H+."@en ; @@ -124937,39 +124949,17 @@ bo:4473 a sybio:Operon , owl:NamedIndividual ; owl:hasValue "ALANINE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.1.1"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0000286"^^xsd:string ; owl:onProperty sybio:accession ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate."@en ; - rdfs:label "UDP-glucose metabolic process"@en , "GO:0006011"@en , "UDP-glucose metabolism"@en ; - rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006011"^^xsd:string ; + owl:hasValue "1.4.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16214 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "phenol 2-monooxygenase [EC:1.14.13.7]"@en ; - rdfs:label "E1.14.13.7"@en ; - sybio:accession "0018662"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16215 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03380"@en ; - tawny:name "16214"@en . - bo:4561 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ydfK_terminator"@en ; sybio:NA "AGCGGCTCCACAAAGGAGGTTAATATTCTGTTAT"^^xsd:string ; @@ -124982,6 +124972,16 @@ bo:4561 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4560 ; tawny:name "4561"@en . +bo:16214 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "phenol 2-monooxygenase [EC:1.14.13.7]"@en ; + rdfs:label "E1.14.13.7"@en ; + sybio:accession "0018662"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16215 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03380"@en ; + tawny:name "16214"@en . + bo:16302 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "benzoate 4-monooxygenase [EC:1.14.13.12]"@en ; rdfs:label "E1.14.13.12"@en ; @@ -125147,23 +125147,6 @@ bo:16125 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00500"@en ; tawny:name "16125"@en . -bo:10488 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "small acid-soluble spore protein;BSU33340;"@en , "Small, acid-soluble spore protein J"@en ; - rdfs:label "sspJ"@en , "BSU33340"@en , "SspJ"@en ; - sybio:AA "MGFFNKDKGKRSEKEKNVIQGALEDAGSALKDDPLQEAVQKKKNNR"@en ; - sybio:accession "Q7WY58"^^xsd:string , "BSU33340"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:28699 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.8 : Sporulation"^^xsd:string ; - sybio:localisation "7 : Spore"^^xsd:string ; - sybio:molecularWeight "5161.575"^^xsd:string ; - sybio:pI "9.457359"^^xsd:string ; - sybio:productType "cp : cell process"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10488"@en . - bo:19940 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "cypB"@en ; @@ -125185,6 +125168,34 @@ bo:25798 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25798"@en . +bo:10488 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "small acid-soluble spore protein;BSU33340;"@en , "Small, acid-soluble spore protein J"@en ; + rdfs:label "sspJ"@en , "BSU33340"@en , "SspJ"@en ; + sybio:AA "MGFFNKDKGKRSEKEKNVIQGALEDAGSALKDDPLQEAVQKKKNNR"@en ; + sybio:accession "Q7WY58"^^xsd:string , "BSU33340"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:28699 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.8 : Sporulation"^^xsd:string ; + sybio:localisation "7 : Spore"^^xsd:string ; + sybio:molecularWeight "5161.575"^^xsd:string ; + sybio:pI "9.457359"^^xsd:string ; + sybio:productType "cp : cell process"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10488"@en . + +bo:25886 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "multi-step reaction - reversible"@en ; + rdfs:label "Malonyl-CoA"@en , "4-Coumaroyl-CoA malonyltransferase(cyclizing)"@en , "C00223 + 3 C00083 <=> C06561 + 4 C00010 + 3 C00011"@en , "cpd:C00223 <=> cpd:C00223"@en ; + sybio:accession "RN:R01613"^^xsd:string ; + sybio:catalyzedBy bo:19780 ; + sybio:catalyzingClass bo:19781 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25886"@en . + bo:10576 a bo:633 , bo:353 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Putative ABC transporter ATP-binding protein albC"@en , "BSU37390;putative transporter involved in subtilosin production;"@en ; rdfs:label "YwhQ"@en , "BSU37390"@en , "AlbC"@en , "albC"@en ; @@ -125203,16 +125214,15 @@ bo:10576 a bo:633 , bo:353 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "10576"@en . -bo:25886 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "multi-step reaction - reversible"@en ; - rdfs:label "Malonyl-CoA"@en , "4-Coumaroyl-CoA malonyltransferase(cyclizing)"@en , "C00223 + 3 C00083 <=> C06561 + 4 C00010 + 3 C00011"@en , "cpd:C00223 <=> cpd:C00223"@en ; - sybio:accession "RN:R01613"^^xsd:string ; - sybio:catalyzedBy bo:19780 ; - sybio:catalyzingClass bo:19781 ; +bo:25974 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label "C08579 + C00005 + C00080 + C00007 <=> C08614 + C00006 + C00001"@en , "oxygen oxidoreductase"@en , " => "@en , "zeaxanthin,NAD(P)H"@en ; + sybio:accession "RN:R07200"^^xsd:string ; + sybio:catalyzingClass bo:25815 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25886"@en . + tawny:name "25974"@en . bo:10664 a bo:843 , owl:NamedIndividual , bo:1496 , sybio:Protein ; rdfs:comment "putative integral inner membrane protein;BSU39970"@en , "Uncharacterized protein yxaH"@en ; @@ -125231,16 +125241,6 @@ bo:10664 a bo:843 , owl:NamedIndividual , bo:1496 , sybio:Pr sybio:taxId "[224308, 1423]"@en ; tawny:name "10664"@en . -bo:25974 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label "C08579 + C00005 + C00080 + C00007 <=> C08614 + C00006 + C00001"@en , "oxygen oxidoreductase"@en , " => "@en , "zeaxanthin,NAD(P)H"@en ; - sybio:accession "RN:R07200"^^xsd:string ; - sybio:catalyzingClass bo:25815 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25974"@en . - bo:17043 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "1-phosphatidylinositol-5-phosphate 4-kinase [EC:2.7.1.149]"@en ; rdfs:label "PIP4K"@en , "E2.7.1.149"@en ; @@ -125263,14 +125263,6 @@ bo:5390 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5389 ; tawny:name "5390"@en . -bo:154 a sybio:RNA , owl:NamedIndividual ; - rdfs:comment "transfer-messenger RNA (tmRNA, 10Sa RNA)"@en ; - rdfs:label "SsrA"@en , "BSU_misc_RNA_55"@en ; - sybio:accession "BSU_misc_RNA_55"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "154"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals."@en ; @@ -125283,6 +125275,14 @@ bo:154 a sybio:RNA , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:154 a sybio:RNA , owl:NamedIndividual ; + rdfs:comment "transfer-messenger RNA (tmRNA, 10Sa RNA)"@en ; + rdfs:label "SsrA"@en , "BSU_misc_RNA_55"@en ; + sybio:accession "BSU_misc_RNA_55"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "154"@en . + bo:10752 a sybio:Protein , owl:NamedIndividual , bo:429 ; rdfs:comment "Uncharacterized membrane protein ybgB"@en , "hypothetical protein;BSU02380"@en ; rdfs:label "BSU02380"@en , "ybgB"@en , "YbgB"@en ; @@ -125491,17 +125491,6 @@ bo:11493 a owl:NamedIndividual , sybio:Protein , bo:1383 ; tawny:name "11493"@en ; owl:sameAs bo:2663 . -bo:11581 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00250"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00250"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11581"@en . - a sybio:CellularComponent , owl:NamedIndividual , owl:Class ; rdfs:comment "A homotrimeric protein complex that catalyzes the transfer of a carbamoyl group to ornithine, forming citrulline."@en ; @@ -125558,6 +125547,17 @@ bo:26891 a sybio:Protein , owl:NamedIndividual , bo:269 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26891"@en . +bo:11581 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00250"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00250"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11581"@en . + bo:19639 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "pyrAA"@en ; @@ -125575,67 +125575,67 @@ bo:19639 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "sigma DNA polymerase"@en , "Tca DNA polymerase"@en , "duplicase"@en , "zeta DNA polymerase"@en , "DNA-dependent DNA polymerase"@en , "DNA duplicase"@en , "delta DNA polymerase"@en , "lambda DNA polymerase"@en , "kappa DNA polymerase"@en , "DNA-directed DNA polymerase"@en , "deoxyribonucleic acid duplicase"@en , "Klenow fragment"@en , "epsilon DNA polymerase"@en , "mu DNA polymerase"@en , "GO:0003887"@en , "DNA polymerase V"@en , "DNA polymerase beta"@en , "deoxyribonucleic polymerase I"@en , "DNA nucleotidyltransferase"@en , "deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase"@en , "DNA polymerase II"@en , "DNA polymerase III"@en , "gamma DNA-directed DNA polymerase"@en , "iota DNA polymerase"@en , "nu DNA polymerase"@en , "alpha DNA polymerase"@en , "DNA polymerase I"@en , "Taq Pol I"@en , "DNA polymerase gamma"@en , "DNA replicase"@en , "sequenase"@en , "theta DNA polymerase"@en , "eta DNA polymerase"@en , "beta DNA polymerase"@en , "deoxyribonucleic duplicase"@en , "Taq DNA polymerase"@en , "DNA polymerase alpha"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003893"^^xsd:string ; + owl:hasValue "DNA-DIRECTED-DNA-POLYMERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003887"^^xsd:string ; + owl:hasValue "GO:0003889"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003891"^^xsd:string ; + owl:hasValue "GO:0003888"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019984"^^xsd:string ; + owl:hasValue "GO:0003887"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016000"^^xsd:string ; + owl:hasValue "2.7.7.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.7"^^xsd:string ; + owl:hasValue "GO:0016448"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003888"^^xsd:string ; + owl:hasValue "GO:0003895"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003890"^^xsd:string ; + owl:hasValue "GO:0015999"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003889"^^xsd:string ; + owl:hasValue "11722 \"DNA-directed DNA polymerase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016448"^^xsd:string ; + owl:hasValue "GO:0019984"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016452"^^xsd:string ; + owl:hasValue "GO:0016449"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.-"^^xsd:string ; + owl:hasValue "GO:0003894"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015999"^^xsd:string ; + owl:hasValue "GO:0016452"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008723"^^xsd:string ; + owl:hasValue "GO:0003893"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003894"^^xsd:string ; + owl:hasValue "2.7.7.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA-DIRECTED-DNA-POLYMERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0003890"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -125643,19 +125643,19 @@ bo:19639 a owl:NamedIndividual , sybio:Enzyme ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016450"^^xsd:string ; + owl:hasValue "GO:0008723"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003895"^^xsd:string ; + owl:hasValue "GO:0016000"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016449"^^xsd:string ; + owl:hasValue "GO:0003891"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11722 \"DNA-directed DNA polymerase activity\""^^xsd:string ; + owl:hasValue "GO:0016450"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -125908,11 +125908,11 @@ bo:10803 a bo:551 , sybio:Protein , owl:NamedIndividual ; rdfs:label "oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor"@en , "GO:0016652"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016652"^^xsd:string ; + owl:hasValue "1.6.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.1.-"^^xsd:string ; + owl:hasValue "GO:0016652"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -125924,11 +125924,11 @@ bo:10803 a bo:551 , sybio:Protein , owl:NamedIndividual ; rdfs:label "transferase"@en , "GO:0016740"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016740"^^xsd:string ; + owl:hasValue "2.-.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.-.-.-"^^xsd:string ; + owl:hasValue "GO:0016740"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -126044,6 +126044,24 @@ bo:30168 a sybio:CDS , owl:NamedIndividual ; "2.0"@en ; tawny:name "30168"@en . +bo:26678 a owl:NamedIndividual , sybio:Protein , bo:473 ; + rdfs:comment "BSU29980;putative dipeptidase"@en , "derived protein;Putative dipeptidase ytjP"@en ; + rdfs:label "BSU29980"@en , "ytjP"@en , "YtjP"@en ; + sybio:AA "MNWEVEVIRKKEDLIRDTQEFLRINSVMDETTAGPGKPFGEGVNASLTSLLELGEKEGFTTKNLDGFAGHIEWGEGDDIIGVLCHVDVVPPGDGWTSDPFSAEIRNGRIYARGAIDDKGPTMAAFYALKIVKDMNLPLSKRVRMIIGTDEESDWRCVEHYFKHEEMPTMGFAPDADFPIINAEKGIIDASLLIPHRPNQAEPKAVLVSFQSGLRLNMVPDAAEAVIEGPKNEEILSSFKDMLRTTDQKGEAAIENGQLILRMYGLSCHAMEPNNGINAGILLCEFLQQTELDDAGKRFVQVVTDKFSGDTRGKKLDIDCEDEISGELTLNVGTLRYKEGQGGELGINIRYPVTAESKVIRDTFESASEFELGEFKDSKPHHVSADHPLVKTLQKVYEGQLGKKADLISIGGGTYARSLKAGVAFGPLFPGRPDSAHQKDEYIEIDDLLRSTALYAQAIYELAK"@en ; + sybio:accession "16080050"^^xsd:string , "O34944"^^xsd:string , "937290"^^xsd:string , "BSU29980"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32493 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "3.8 : Protein modification"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "51050.77"^^xsd:string ; + sybio:pI "4.853355"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26678"@en . + bo:11368 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Spore germination protein KA"@en , "spore germination receptor subunit;BSU03700"@en ; rdfs:label "GerKA"@en , "BSU03700"@en , "gerKA"@en ; @@ -126063,24 +126081,6 @@ bo:11368 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11368"@en . -bo:26678 a owl:NamedIndividual , sybio:Protein , bo:473 ; - rdfs:comment "BSU29980;putative dipeptidase"@en , "derived protein;Putative dipeptidase ytjP"@en ; - rdfs:label "BSU29980"@en , "ytjP"@en , "YtjP"@en ; - sybio:AA "MNWEVEVIRKKEDLIRDTQEFLRINSVMDETTAGPGKPFGEGVNASLTSLLELGEKEGFTTKNLDGFAGHIEWGEGDDIIGVLCHVDVVPPGDGWTSDPFSAEIRNGRIYARGAIDDKGPTMAAFYALKIVKDMNLPLSKRVRMIIGTDEESDWRCVEHYFKHEEMPTMGFAPDADFPIINAEKGIIDASLLIPHRPNQAEPKAVLVSFQSGLRLNMVPDAAEAVIEGPKNEEILSSFKDMLRTTDQKGEAAIENGQLILRMYGLSCHAMEPNNGINAGILLCEFLQQTELDDAGKRFVQVVTDKFSGDTRGKKLDIDCEDEISGELTLNVGTLRYKEGQGGELGINIRYPVTAESKVIRDTFESASEFELGEFKDSKPHHVSADHPLVKTLQKVYEGQLGKKADLISIGGGTYARSLKAGVAFGPLFPGRPDSAHQKDEYIEIDDLLRSTALYAQAIYELAK"@en ; - sybio:accession "16080050"^^xsd:string , "O34944"^^xsd:string , "937290"^^xsd:string , "BSU29980"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32493 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "3.8 : Protein modification"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "51050.77"^^xsd:string ; - sybio:pI "4.853355"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26678"@en . - bo:6094 a owl:NamedIndividual , sybio:Operon ; rdfs:label "ywbLMN"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -126114,26 +126114,6 @@ bo:30256 a sybio:CDS , owl:NamedIndividual ; "13.0"@en ; tawny:name "30256"@en . -bo:11456 a sybio:Protein , bo:1517 , bo:284 , bo:555 , owl:NamedIndividual ; - rdfs:comment "transcriptional regulator (NifA/NtrC family);BSU27080;"@en , "Transcriptional regulatory protein levR"@en ; - rdfs:label "BSU27080"@en , "levR"@en , "LevR"@en ; - sybio:AA "VRRIDKIYHQLKHNFHDSTLDHLLKIQGNSAKEIAEQLKMERSNVSFELNNLVRSKKVIKIKTFPVRYIPVEIAEKLFNKKWDTEMMEVKDLQAFSGNSKQNHQHISTNPLELMIGAKGSLKKAISQAKAAVFYPPNGLHMLLLGPTGSGKSLFANRIYQFAIYSDILKAGAPFITFNCADYYNNPQLLLSQLFGHKKGSFTGAAEDKAGLVEQANGGILFMDEIHRLPPEGQEMLFYFIDSGSYNRLGESEHKRTSNVLFICATTENPSSALLKTFLRRIPMTIHIPSLEERSLNERVDLTTFLLGKEAERIKKNLSVHIDVYNALIHSAKFGNVGQLKSNVQLVCAHGFLHNLDRNEVIELTVRDLPDEIKQEWMSSSKNMQRSKAISEYVNITTIISPIVEDETTKIDEDLSFNLYHLIEEKVKTLMKEGLSKKDINQYILTDVHLHVRSFFHHQAFQKDNLLTFVEDDVIQMTKQLKEIAEHELDCTFDRKFIYFLSMHIDAFLKRGKQIDVLNTQETDEIRDTHVKEYRVAMIFKDKIQEYFKVAIPEIEVIYLTMLIHSIKSLKENKRVGIIVAAHGNSTASSMVEVATELLGSTPIAAVDMPLTVSPSDILECVAEKMKQVDEGEGVLMLVDMGSLAMLESRLEEKTGISIKTISNVTTSMVLDAVRKVNYLNLNLHAIYQSVTKDFIELWERQPAASGKKKALVSICTTGSGTAKKLEDILTTIVNKASDTPIHILTVSSIKLANSIKEIEKEYEILATVGTKDPKINAPHVSLEVLIEGEGEKLIQQAITKGSISLSNGLNEANIIVRELCEDSLKKYLVFLNPHHVIDMLLEWLQTVQDELGVIFNNAVLIKVIMHTAFAFERVIKQNPIAFSEEEEINDQLKEMVYVTERTLAPYEEKLGLRISDDEKLFIAAIFAEEVHGQLF"@en ; - sybio:accession "P23914"^^xsd:string , "BSU27080"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:31870 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , ; - sybio:molecularWeight "105796.93"^^xsd:string ; - sybio:pI "6.012474"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:relatedTo bo:9200 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11456"@en ; - owl:sameAs bo:2589 . - bo:26766 a sybio:Protein , bo:1535 , owl:NamedIndividual ; rdfs:comment "ATP phosphoribosyltransferase regulatory subunit;derived protein"@en , "BSU34930;histidyl-tRNA synthetase component of ATP phophoribosyltransferase"@en ; rdfs:label "BSU34930"@en , "hisZ"@en , "HisZ"@en ; @@ -126154,6 +126134,26 @@ bo:26766 a sybio:Protein , bo:1535 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26766"@en . +bo:11456 a sybio:Protein , bo:1517 , bo:284 , bo:555 , owl:NamedIndividual ; + rdfs:comment "transcriptional regulator (NifA/NtrC family);BSU27080;"@en , "Transcriptional regulatory protein levR"@en ; + rdfs:label "BSU27080"@en , "levR"@en , "LevR"@en ; + sybio:AA "VRRIDKIYHQLKHNFHDSTLDHLLKIQGNSAKEIAEQLKMERSNVSFELNNLVRSKKVIKIKTFPVRYIPVEIAEKLFNKKWDTEMMEVKDLQAFSGNSKQNHQHISTNPLELMIGAKGSLKKAISQAKAAVFYPPNGLHMLLLGPTGSGKSLFANRIYQFAIYSDILKAGAPFITFNCADYYNNPQLLLSQLFGHKKGSFTGAAEDKAGLVEQANGGILFMDEIHRLPPEGQEMLFYFIDSGSYNRLGESEHKRTSNVLFICATTENPSSALLKTFLRRIPMTIHIPSLEERSLNERVDLTTFLLGKEAERIKKNLSVHIDVYNALIHSAKFGNVGQLKSNVQLVCAHGFLHNLDRNEVIELTVRDLPDEIKQEWMSSSKNMQRSKAISEYVNITTIISPIVEDETTKIDEDLSFNLYHLIEEKVKTLMKEGLSKKDINQYILTDVHLHVRSFFHHQAFQKDNLLTFVEDDVIQMTKQLKEIAEHELDCTFDRKFIYFLSMHIDAFLKRGKQIDVLNTQETDEIRDTHVKEYRVAMIFKDKIQEYFKVAIPEIEVIYLTMLIHSIKSLKENKRVGIIVAAHGNSTASSMVEVATELLGSTPIAAVDMPLTVSPSDILECVAEKMKQVDEGEGVLMLVDMGSLAMLESRLEEKTGISIKTISNVTTSMVLDAVRKVNYLNLNLHAIYQSVTKDFIELWERQPAASGKKKALVSICTTGSGTAKKLEDILTTIVNKASDTPIHILTVSSIKLANSIKEIEKEYEILATVGTKDPKINAPHVSLEVLIEGEGEKLIQQAITKGSISLSNGLNEANIIVRELCEDSLKKYLVFLNPHHVIDMLLEWLQTVQDELGVIFNNAVLIKVIMHTAFAFERVIKQNPIAFSEEEEINDQLKEMVYVTERTLAPYEEKLGLRISDDEKLFIAAIFAEEVHGQLF"@en ; + sybio:accession "P23914"^^xsd:string , "BSU27080"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:31870 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , ; + sybio:molecularWeight "105796.93"^^xsd:string ; + sybio:pI "6.012474"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:relatedTo bo:9200 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11456"@en ; + owl:sameAs bo:2589 . + bo:6182 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yxxF"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -126366,11 +126366,11 @@ bo:24045 a owl:NamedIndividual , owl:Class , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12563 \"IMP dehydrogenase activity\""^^xsd:string ; + owl:hasValue "1.1.1.205"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.205"^^xsd:string ; + owl:hasValue "12563 \"IMP dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -127134,16 +127134,6 @@ bo:31400 a owl:NamedIndividual , sybio:CDS ; "301.0"@en ; tawny:name "31400"@en . -bo:27910 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "cotSA_RBS"@en ; - sybio:NA "TGCAGGAATGGAGGCTATGT"^^xsd:string ; - sybio:begin "3161914"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3161895"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:29003 ; - tawny:name "27910"@en . - bo:12600 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C6H14N2O"@en ; rdfs:label "C6H14N2O"@en , "N-Acetylputrescine"@en ; @@ -127155,13 +127145,23 @@ bo:12600 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C02714"@en ; tawny:name "12600"@en . +bo:27910 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "cotSA_RBS"@en ; + sybio:NA "TGCAGGAATGGAGGCTATGT"^^xsd:string ; + sybio:begin "3161914"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3161895"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:29003 ; + tawny:name "27910"@en . + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)."@en ; rdfs:label "glutamate-tRNA synthetase"@en , "glutamyl-transfer ribonucleic acid synthetase"@en , "glutamyl-transfer RNA synthetase"@en , "L-glutamate:tRNAGlu ligase"@en , "glutamyl-transfer ribonucleate synthetase"@en , "glutamyl-tRNA synthetase"@en , "glutamate-tRNA ligase"@en , "glutamic acid translase"@en , "GO:0004818"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004818"^^xsd:string ; + owl:hasValue "6.1.1.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -127169,11 +127169,11 @@ bo:12600 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15085 \"glutamate-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004818"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.17"^^xsd:string ; + owl:hasValue "15085 \"glutamate-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -127573,16 +127573,6 @@ bo:7113 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "1423"@en ; tawny:name "7113"@en . -bo:7201 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Peptide synthetase"@en ; - rdfs:label "fenC"@en ; - sybio:accession "O87606"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:taxId "1423"@en ; - tawny:name "7201"@en . - bo:1476 a owl:Class ; rdfs:label "COG2264"@en ; rdfs:subClassOf bo:194 , sybio:COG ; @@ -127594,6 +127584,16 @@ bo:1476 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1476"@en . +bo:7201 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Peptide synthetase"@en ; + rdfs:label "fenC"@en ; + sybio:accession "O87606"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:taxId "1423"@en ; + tawny:name "7201"@en . + bo:1564 a owl:Class ; rdfs:label "COG0373"@en ; rdfs:subClassOf bo:168 , sybio:COG ; @@ -127737,11 +127737,11 @@ bo:16679 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "GO:0006564"@en , "L-serine synthesis"@en , "L-serine formation"@en , "L-serine biosynthetic process"@en , "L-serine biosynthesis"@en , "L-serine anabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006564"^^xsd:string ; + owl:hasValue "SERSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SERSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0006564"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -127766,15 +127766,15 @@ bo:16855 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008843"^^xsd:string ; + owl:hasValue "0004568"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GH19"^^xsd:string ; + owl:hasValue "0008843"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004568"^^xsd:string ; + owl:hasValue "GH19"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -128246,11 +128246,11 @@ bo:17860 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PDXH"@en , "PNPO"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004733"^^xsd:string ; + owl:hasValue "COG0259"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0259"^^xsd:string ; + owl:hasValue "0004733"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -128454,15 +128454,15 @@ bo:16906 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "GO:0019028"@en , "viral capsid"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046728"^^xsd:string ; + owl:hasValue "Capsid"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Capsid"^^xsd:string ; + owl:hasValue "GO:0019028"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019028"^^xsd:string ; + owl:hasValue "GO:0046728"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -128751,15 +128751,15 @@ bo:17911 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "QNS1"@en , "E6.3.5.1"@en , "NADSYN1"@en , "NADE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0388"^^xsd:string ; + owl:hasValue "COG0171"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0171"^^xsd:string ; + owl:hasValue "0003952"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003952"^^xsd:string ; + owl:hasValue "COG0388"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -129341,6 +129341,18 @@ bo:10293 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10293"@en . +bo:25691 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.99.30"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.99.30"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25691"@en . + bo:10381 a bo:1585 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Carbon starvation protein A homolog"@en , "carbon starvation-induced membrane protein;BSU28710"@en ; rdfs:label "CstA"@en , "BSU28710"@en , "cstA"@en ; @@ -129359,18 +129371,6 @@ bo:10381 a bo:1585 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10381"@en . -bo:25691 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.99.30"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.99.30"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25691"@en . - bo:6698 a sybio:TF , owl:NamedIndividual ; rdfs:label "BSU03040"@en ; sybio:accession "BSU03040"^^xsd:string ; @@ -129515,11 +129515,11 @@ bo:18703 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "SIAT8A"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003828"^^xsd:string ; + owl:hasValue "GT29"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT29"^^xsd:string ; + owl:hasValue "0003828"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -129801,25 +129801,6 @@ bo:19532 a owl:NamedIndividual , sybio:Enzyme ; tawny:name "19532"@en ; owl:sameAs bo:26227 . -bo:10168 a bo:364 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Putative transporter yoaB"@en , "BSU18540;negatively charged metabolite transporter"@en ; - rdfs:label "yoaB"@en , "YoaB"@en , "BSU18540"@en ; - sybio:AA "MLDKIGIPKRLAWGFLGVVLFMMGDGLEQGWLSPFLIENGLTVQQSASIFSIYGIALAIASWFSGVCLEAFGAKRTMFMGLLFYVIGTAAFIVFGFEQLNLPVMYVTYFVKGLGYPLFAYSFLTWVIYRTPQSKLSTAVGWFWIAYCLGMFVFGAWYSSYAIKAFGYLNTLWSSIFWVCLGAFFALFINKDRFEKKKRKRSETAEELLKGVTILFTNPRVLTGGIIRIINSIGTYGFPVFLPMHMAQHGISTNVWLQIWGTIFLGNIVFNLIFGIVGDKFGWKNTVIWFGGVGCGIFTVLLYYAPVFSGGSLAVVSVIGFIWGGLLAGYVPIGAIVPTVAGKDKGAAMSVLNLAAGLSAFVGPALAWLFIGLVGAQGVVWIFAALYLASAVLTKCIHIPEEKAVKEETSPQYAS"@en ; - sybio:accession "BSU18540"^^xsd:string , "O34864"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:29853 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "45374.885"^^xsd:string ; - sybio:pI "9.276421"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10168"@en . - bo:19620 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "ctaB"@en ; @@ -129842,6 +129823,37 @@ bo:25478 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 ; tawny:name "25478"@en . +bo:10168 a bo:364 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Putative transporter yoaB"@en , "BSU18540;negatively charged metabolite transporter"@en ; + rdfs:label "yoaB"@en , "YoaB"@en , "BSU18540"@en ; + sybio:AA "MLDKIGIPKRLAWGFLGVVLFMMGDGLEQGWLSPFLIENGLTVQQSASIFSIYGIALAIASWFSGVCLEAFGAKRTMFMGLLFYVIGTAAFIVFGFEQLNLPVMYVTYFVKGLGYPLFAYSFLTWVIYRTPQSKLSTAVGWFWIAYCLGMFVFGAWYSSYAIKAFGYLNTLWSSIFWVCLGAFFALFINKDRFEKKKRKRSETAEELLKGVTILFTNPRVLTGGIIRIINSIGTYGFPVFLPMHMAQHGISTNVWLQIWGTIFLGNIVFNLIFGIVGDKFGWKNTVIWFGGVGCGIFTVLLYYAPVFSGGSLAVVSVIGFIWGGLLAGYVPIGAIVPTVAGKDKGAAMSVLNLAAGLSAFVGPALAWLFIGLVGAQGVVWIFAALYLASAVLTKCIHIPEEKAVKEETSPQYAS"@en ; + sybio:accession "BSU18540"^^xsd:string , "O34864"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:29853 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "45374.885"^^xsd:string ; + sybio:pI "9.276421"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10168"@en . + +bo:25566 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.2.1.84"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.2.1.84"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25566"@en . + bo:10256 a bo:1325 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein ypeP"@en , "putative ribonuclease;BSU21970"@en ; rdfs:label "YpeP"@en , "BSU21970"@en , "ypeP"@en ; @@ -129859,18 +129871,6 @@ bo:10256 a bo:1325 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10256"@en . -bo:25566 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.2.1.84"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.84"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25566"@en . - bo:25654 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "orphan"@en ; rdfs:label "C00925 + C00001 <=> C00925 + G13034"@en , " => "@en ; @@ -130109,6 +130109,8 @@ bo:13982 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01880"@en ; tawny:name "13982"@en . +sybio:hasRole a owl:DatatypeProperty . + bo:4204 a owl:NamedIndividual , sybio:PositivelyRegulatedOperator , sybio:Operator ; rdfs:comment "Positive"@en ; rdfs:label "YvrH_yvrI"@en ; @@ -130119,8 +130121,6 @@ bo:4204 a owl:NamedIndividual , sybio:PositivelyRegulatedOpe sybio:regulationType "Positive"^^xsd:string ; tawny:name "4204"@en . -sybio:hasRole a owl:DatatypeProperty . - bo:32870 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU22050"@en , "terpene family molecule synthase (EC:2.3.1.-)"@en ; rdfs:label "BSU22050"@en , "bcsA"@en ; @@ -130157,11 +130157,11 @@ bo:32870 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.27-RXN"^^xsd:string ; + owl:hasValue "GO:0015415"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015415"^^xsd:string ; + owl:hasValue "3.6.3.27-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -130183,25 +130183,6 @@ bo:32870 a owl:NamedIndividual , sybio:CDS ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:11085 a bo:632 , bo:353 , owl:NamedIndividual , sybio:Protein , bo:356 ; - rdfs:comment "ATP-binding teichoic acid precursor transporter component;BSU35700;;"@en , "Teichoic acids export ATP-binding protein tagH"@en ; - rdfs:label "tagH"@en , "TagH"@en , "BSU35700"@en ; - sybio:AA "MKLKVSFRNVSKQYHLYKKQSDKIKGLFFPAKDNGFFAVRNVSFDVYEGETIGFVGINGSGKSTMSNLLAKIIPPTSGEIEMNGQPSLIAIAAGLNNQLTGRDNVRLKCLMMGLTNKEIDDMYDSIVEFAEIGDFINQPVKNYSSGMKSRLGFAISVHIDPDILIIDEALSVGDQTFYQKCVDRINEFKKQGKTIFFVSHSIGQIEKMCDRVAWMHYGELRMFDETKTVVKEYKAFIDWFNKLSKKEKETYKKEQTEERKKEDPEAFARFRKKKKKPKSLANAIQIAILSILTVFMAGTMFFNAPLRTIASFGAIPQNEVKNHHGDAKGKSEERLTAINKQGFIANEKAAAYKDQGLKQKADVTLPFGTKVTVAAKGKQAAKIKFDGHSYYVKQSAVATNMKHAELHATAFTSYVSQNAASSYEYFLKFLGDSSTSIQSKLNGYTEGNKADGRKTLNFDYEKISYVLENDKATELIFHNISPINPASLSLSDSDVLYDSSKKRFLVNTDDQVFAVDNEEHTLTLMLK"@en ; - sybio:accession "P42954"^^xsd:string , "BSU35700"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30578 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "59241.31"^^xsd:string ; - sybio:pI "9.125069"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:relatedTo bo:11086 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11085"@en . - bo:26395 a bo:1172 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "derived protein;1-deoxy-D-xylulose 5-phosphate reductoisomerase"@en , "1-deoxy-D-xylulose-5-phosphate reductoisomerase;BSU16550"@en ; rdfs:label "Dxr"@en , "BSU16550"@en , "dxr"@en , "YluB"@en ; @@ -130221,23 +130202,24 @@ bo:26395 a bo:1172 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26395"@en . -bo:11173 a owl:NamedIndividual , sybio:Protein , bo:1224 ; - rdfs:comment "Uncharacterized protein yxiA"@en , "BSU39330;arabinan endo-1,5-alpha-L-arabinosidase"@en ; - rdfs:label "AbnB"@en , "YxiA"@en , "BSU39330"@en , "yxiA"@en ; - sybio:AA "MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNSAYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWPVAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQTINIQLNKNHTISGEMTGTWRKTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK"@en ; - sybio:accession "P42293"^^xsd:string , "BSU39330"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; +bo:11085 a bo:632 , bo:353 , owl:NamedIndividual , sybio:Protein , bo:356 ; + rdfs:comment "ATP-binding teichoic acid precursor transporter component;BSU35700;;"@en , "Teichoic acids export ATP-binding protein tagH"@en ; + rdfs:label "tagH"@en , "TagH"@en , "BSU35700"@en ; + sybio:AA "MKLKVSFRNVSKQYHLYKKQSDKIKGLFFPAKDNGFFAVRNVSFDVYEGETIGFVGINGSGKSTMSNLLAKIIPPTSGEIEMNGQPSLIAIAAGLNNQLTGRDNVRLKCLMMGLTNKEIDDMYDSIVEFAEIGDFINQPVKNYSSGMKSRLGFAISVHIDPDILIIDEALSVGDQTFYQKCVDRINEFKKQGKTIFFVSHSIGQIEKMCDRVAWMHYGELRMFDETKTVVKEYKAFIDWFNKLSKKEKETYKKEQTEERKKEDPEAFARFRKKKKKPKSLANAIQIAILSILTVFMAGTMFFNAPLRTIASFGAIPQNEVKNHHGDAKGKSEERLTAINKQGFIANEKAAAYKDQGLKQKADVTLPFGTKVTVAAKGKQAAKIKFDGHSYYVKQSAVATNMKHAELHATAFTSYVSQNAASSYEYFLKFLGDSSTSIQSKLNGYTEGNKADGRKTLNFDYEKISYVLENDKATELIFHNISPINPASLSLSDSDVLYDSSKKRFLVNTDDQVFAVDNEEHTLTLMLK"@en ; + sybio:accession "P42954"^^xsd:string , "BSU35700"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31881 ; + sybio:encodedBy bo:30578 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "52605.07"^^xsd:string ; - sybio:pI "7.297203"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; + sybio:hasFunction , , , , , ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "59241.31"^^xsd:string ; + sybio:pI "9.125069"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:relatedTo bo:11086 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11173"@en . + tawny:name "11085"@en . bo:26483 a bo:1396 , bo:1397 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Phosphopentomutase;derived protein"@en , "phosphopentomutase;BSU23500"@en ; @@ -130259,6 +130241,24 @@ bo:26483 a bo:1396 , bo:1397 , sybio:Protein , owl:NamedIn sybio:taxId "[224308, 1423]"@en ; tawny:name "26483"@en . +bo:11173 a owl:NamedIndividual , sybio:Protein , bo:1224 ; + rdfs:comment "Uncharacterized protein yxiA"@en , "BSU39330;arabinan endo-1,5-alpha-L-arabinosidase"@en ; + rdfs:label "AbnB"@en , "YxiA"@en , "BSU39330"@en , "yxiA"@en ; + sybio:AA "MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNSAYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWPVAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQTINIQLNKNHTISGEMTGTWRKTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK"@en ; + sybio:accession "P42293"^^xsd:string , "BSU39330"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31881 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "52605.07"^^xsd:string ; + sybio:pI "7.297203"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11173"@en . + bo:30061 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21300"@en ; rdfs:label "BSU21300"@en , "yomM"@en ; @@ -130284,24 +130284,6 @@ bo:30061 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30061"@en . -bo:11261 a owl:NamedIndividual , sybio:Protein , bo:298 ; - rdfs:comment "BSU00950;ribonuclease for 23S RNA maturation"@en , "Putative ribonuclease mrnC"@en ; - rdfs:label "BSU00950"@en , "mrnC"@en , "YazC"@en , "MrnC"@en ; - sybio:AA "MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT"@en ; - sybio:accession "O31418"^^xsd:string , "BSU00950"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30930 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "16228.79"^^xsd:string ; - sybio:pI "8.775154"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26362 , bo:6960 , bo:6831 , bo:9363 , bo:11354 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11261"@en . - bo:26571 a bo:1569 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Nucleoside-triphosphatase;derived protein"@en , "inosine/xanthosine triphosphate pyrophosphatase (subunit A);BSU28360"@en ; rdfs:label "inosine"@en , "subunit A"@en , "BSU28360"@en , "ysnA"@en , "YsnA"@en ; @@ -130320,6 +130302,24 @@ bo:26571 a bo:1569 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26571"@en . +bo:11261 a owl:NamedIndividual , sybio:Protein , bo:298 ; + rdfs:comment "BSU00950;ribonuclease for 23S RNA maturation"@en , "Putative ribonuclease mrnC"@en ; + rdfs:label "BSU00950"@en , "mrnC"@en , "YazC"@en , "MrnC"@en ; + sybio:AA "MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT"@en ; + sybio:accession "O31418"^^xsd:string , "BSU00950"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30930 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "16228.79"^^xsd:string ; + sybio:pI "8.775154"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26362 , bo:6960 , bo:6831 , bo:9363 , bo:11354 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11261"@en . + a owl:Class ; rdfs:comment "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)."@en ; @@ -130414,7 +130414,7 @@ bo:31916 a sybio:CDS , owl:NamedIndividual ; rdfs:label "translation initiation factor"@en , "GO:0003743"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003745"^^xsd:string ; + owl:hasValue "GO:0003743"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -130426,7 +130426,7 @@ bo:31916 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003743"^^xsd:string ; + owl:hasValue "GO:0003745"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -130438,27 +130438,27 @@ bo:31916 a sybio:CDS , owl:NamedIndividual ; rdfs:label "glycine oxidase"@en , "GO:0043799"@en , "glycine:oxygen oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.3.19"^^xsd:string ; + owl:hasValue "RXN-8673"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.3.19-RXN"^^xsd:string ; + owl:hasValue "GO:0043799"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8674"^^xsd:string ; + owl:hasValue "1.4.3.19-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043799"^^xsd:string ; + owl:hasValue "RXN-8674"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8673"^^xsd:string ; + owl:hasValue "RXN-8672"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8672"^^xsd:string ; + owl:hasValue "1.4.3.19"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -131057,11 +131057,11 @@ bo:14686 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "KORB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1013"^^xsd:string ; + owl:hasValue "0047553"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047553"^^xsd:string ; + owl:hasValue "COG1013"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -131161,15 +131161,15 @@ bo:12141 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004359"^^xsd:string ; + owl:hasValue "10219 \"glutaminase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10219 \"glutaminase activity\""^^xsd:string ; + owl:hasValue "GLUTAMIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTAMIN-RXN"^^xsd:string ; + owl:hasValue "GO:0004359"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -131599,11 +131599,11 @@ bo:15478 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "ASNA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004071"^^xsd:string ; + owl:hasValue "COG2502"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2502"^^xsd:string ; + owl:hasValue "0004071"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -131648,46 +131648,29 @@ bo:15742 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01705"@en ; tawny:name "15742"@en . -bo:16396 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "aromatic amino acid aminotransferase I [EC:2.6.1.57]"@en ; - rdfs:label "ARO8"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1167"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008793"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821"@en ; - tawny:name "16396"@en . - a owl:Class , sybio:BiologicalProcess , owl:NamedIndividual ; rdfs:comment "The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway."@en ; rdfs:label "DNA repair"@en , "GO:0006281"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73942 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "526250 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602608 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "558121 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469708 \"DNA Repair\""^^xsd:string ; + owl:hasValue "585783 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600694 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "470344 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600616 \"DNA Repair\""^^xsd:string ; + owl:hasValue "487420 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -131695,119 +131678,119 @@ bo:16396 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448579 \"DNA Repair\""^^xsd:string ; + owl:hasValue "517374 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531127 \"DNA Repair\""^^xsd:string ; + owl:hasValue "73942 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557757 \"DNA Repair\""^^xsd:string ; + owl:hasValue "469708 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA_repair"^^xsd:string ; + owl:hasValue "598160 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581951 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "568747 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487420 \"DNA Repair\""^^xsd:string ; + owl:hasValue "488024 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542599 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "602518 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597351 \"DNA Repair\""^^xsd:string ; + owl:hasValue "73894 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599712 \"DNA Repair\""^^xsd:string ; + owl:hasValue "542209 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542209 \"DNA Repair\""^^xsd:string ; + owl:hasValue "536499 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73894 \"DNA Repair\""^^xsd:string ; + owl:hasValue "581951 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595411 \"DNA Repair\""^^xsd:string ; + owl:hasValue "597351 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581572 \"DNA Repair\""^^xsd:string ; + owl:hasValue "GO:0006281"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006281"^^xsd:string ; + owl:hasValue "552173 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602518 \"DNA Repair\""^^xsd:string ; + owl:hasValue "DNA_repair"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488024 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "599712 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568747 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "507985 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598160 \"DNA Repair\""^^xsd:string ; + owl:hasValue "568370 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536499 \"DNA Repair\""^^xsd:string ; + owl:hasValue "581572 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526250 \"DNA Repair\""^^xsd:string ; + owl:hasValue "600694 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449225 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "542599 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568370 \"DNA Repair\""^^xsd:string ; + owl:hasValue "449225 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552173 \"DNA Repair\""^^xsd:string ; + owl:hasValue "531127 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470344 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "448579 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585783 \"DNA Repair\""^^xsd:string ; + owl:hasValue "600616 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558121 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "557757 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517374 \"DNA Repair\""^^xsd:string ; + owl:hasValue "507375 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507985 \"DNA Damage Reversal\""^^xsd:string ; + owl:hasValue "602608 \"DNA Damage Reversal\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507375 \"DNA Repair\""^^xsd:string ; + owl:hasValue "595411 \"DNA Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -131817,6 +131800,23 @@ bo:16396 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16396 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "aromatic amino acid aminotransferase I [EC:2.6.1.57]"@en ; + rdfs:label "ARO8"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1167"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0008793"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821"@en ; + tawny:name "16396"@en . + bo:15830 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "E3.4.-.-"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -131825,16 +131825,6 @@ bo:15830 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01423"@en ; tawny:name "15830"@en . -bo:16484 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "novobiocin biosynthesis protein NovQ"@en ; - rdfs:label "NOVQ"@en ; - sybio:accession "Q9L9F1"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16485 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12707"@en ; - tawny:name "16484"@en . - bo:28067 a sybio:Shim , owl:NamedIndividual ; rdfs:label "yfnH_RBS_upstream"@en ; sybio:NA "TGAAACCGGATTGAAATCGGACAAATTATCGGGGAAATGCCTTGATAGATTGTGAAGATGTACCAGGTTTCGAACTCAATATT"^^xsd:string ; @@ -131845,6 +131835,16 @@ bo:28067 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28066 ; tawny:name "28067"@en . +bo:16484 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "novobiocin biosynthesis protein NovQ"@en ; + rdfs:label "NOVQ"@en ; + sybio:accession "Q9L9F1"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16485 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12707"@en ; + tawny:name "16484"@en . + bo:16572 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "phosphoenolpyruvate phosphomutase [EC:5.4.2.9]"@en ; rdfs:label "E5.4.2.9"@en ; @@ -131870,11 +131870,11 @@ bo:16660 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GST"@en , "E2.5.1.18"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004364"^^xsd:string ; + owl:hasValue "COG0625"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0625"^^xsd:string ; + owl:hasValue "0004364"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -132124,15 +132124,15 @@ bo:1068 a owl:Class ; rdfs:label "altronate dehydratase"@en , "D-altronate hydro-lyase"@en , "GO:0008789"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALTRODEHYDRAT-RXN"^^xsd:string ; + owl:hasValue "GO:0008789"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.7"^^xsd:string ; + owl:hasValue "ALTRODEHYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008789"^^xsd:string ; + owl:hasValue "4.2.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -132203,11 +132203,11 @@ bo:29072 a owl:NamedIndividual , sybio:CDS ; rdfs:label "sugar--PEP phosphotransferase enzyme I"@en , "GO:0008965"@en , "phosphoenolpyruvate sugar phosphotransferase enzyme I"@en , "enzyme I of the phosphotransferase system"@en , "phosphopyruvate--protein phosphotransferase"@en , "phosphopyruvate--protein factor phosphotransferase"@en , "phosphoenolpyruvate:protein-L-histidine N-pros-phosphotransferase"@en , "phosphoenolpyruvate:protein-L-histidine Npi-phosphotransferase"@en , "phosphoenolpyruvate--protein phosphatase"@en , "phosphoenolpyruvate-protein phosphotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.3.9"^^xsd:string ; + owl:hasValue "2.7.3.9-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.3.9-RXN"^^xsd:string ; + owl:hasValue "2.7.3.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -132269,7 +132269,7 @@ bo:15529 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.5.99.2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0665"^^xsd:string ; + owl:hasValue "COG0404"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -132277,7 +132277,7 @@ bo:15529 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0404"^^xsd:string ; + owl:hasValue "COG0665"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -132322,6 +132322,18 @@ bo:16359 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11821"@en ; tawny:name "16359"@en . +bo:4794 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "glpFK_terminator"@en ; + sybio:NA "GAGGAGAGACCACAGCACCAAAGTGTAAGCATGCACTTTGGCTGTTGTGGTCTCTTTTTCTATTTACCG"^^xsd:string ; + sybio:annotatedSequence "GAGGA{left}GAGACCACAGCACCAAAGTGTA{/left}AGCA{right}TGCACTTTGGCTGTTGTGGTCTC{/right}TTTTTCTATTTACCG"@en ; + sybio:begin "1004885"@en ; + sybio:deltaGo "-37.5"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1004953"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4793 ; + tawny:name "4794"@en . + bo:16447 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "coumermycin A biosynthesis protein CouP"@en ; rdfs:label "COUP"@en ; @@ -132335,18 +132347,6 @@ bo:16447 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12727"@en ; tawny:name "16447"@en . -bo:4794 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "glpFK_terminator"@en ; - sybio:NA "GAGGAGAGACCACAGCACCAAAGTGTAAGCATGCACTTTGGCTGTTGTGGTCTCTTTTTCTATTTACCG"^^xsd:string ; - sybio:annotatedSequence "GAGGA{left}GAGACCACAGCACCAAAGTGTA{/left}AGCA{right}TGCACTTTGGCTGTTGTGGTCTC{/right}TTTTTCTATTTACCG"@en ; - sybio:begin "1004885"@en ; - sybio:deltaGo "-37.5"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1004953"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4793 ; - tawny:name "4794"@en . - bo:4882 a sybio:Operon , owl:NamedIndividual ; rdfs:label "appDFABC"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -132355,16 +132355,6 @@ bo:4882 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "appD,appF,appA,appB,appC"@en ; tawny:name "4882"@en . -bo:16535 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "p-methyltransferase"@en ; - rdfs:label "PHPK"@en ; - sybio:accession "Q5IW50"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16536 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12914"@en ; - tawny:name "16535"@en . - a owl:Class ; rdfs:comment "The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; @@ -132377,6 +132367,16 @@ bo:16535 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16535 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "p-methyltransferase"@en ; + rdfs:label "PHPK"@en ; + sybio:accession "Q5IW50"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16536 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12914"@en ; + tawny:name "16535"@en . + bo:28118 a sybio:RBS , owl:NamedIndividual ; rdfs:label "rapA_RBS"@en ; sybio:NA "AATTCAAAAGGGGGGATTAA"^^xsd:string ; @@ -132387,6 +132387,14 @@ bo:28118 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31307 ; tawny:name "28118"@en . +bo:4970 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ykvUV"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32093 , bo:31373 ; + sybio:operonGenes "ykvU,ykvV"@en ; + tawny:name "4970"@en . + bo:16623 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "prunasin beta-glucosidase [EC:3.2.1.118]"@en ; rdfs:label "PH"@en ; @@ -132397,14 +132405,6 @@ bo:16623 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13032"@en ; tawny:name "16623"@en . -bo:4970 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ykvUV"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32093 , bo:31373 ; - sybio:operonGenes "ykvU,ykvV"@en ; - tawny:name "4970"@en . - bo:28206 a owl:NamedIndividual , sybio:RBS ; rdfs:label "sinR_RBS"@en ; sybio:NA "GAAGGTGATGACA"^^xsd:string ; @@ -132425,11 +132425,11 @@ bo:28206 a owl:NamedIndividual , sybio:RBS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046564"^^xsd:string ; + owl:hasValue "4.1.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.2"^^xsd:string ; + owl:hasValue "GO:0046564"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -132440,11 +132440,11 @@ bo:16711 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "BCSA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT2"^^xsd:string ; + owl:hasValue "0016760"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016760"^^xsd:string ; + owl:hasValue "GT2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -132592,6 +132592,25 @@ bo:17188 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03735+K03736+K04019"@en ; tawny:name "17188"@en . +bo:10897 a bo:555 , owl:NamedIndividual , bo:536 , sybio:Protein , bo:554 ; + rdfs:comment "BSU04160;transcriptional regulator"@en , "Transcriptional regulator mtlR"@en ; + rdfs:label "BSU04160"@en , "mtlR"@en , "MtlR"@en , "YdaA"@en ; + sybio:AA "MYMTAREQKLLKHLLLQNRYITVTELAELMQVSTRTIHRELKSIKPLMETVGLTLDKQPGKGLKAVGSPEGKQKLLTDLSYEQHEYSADERKLLILCSLLESQEPVKLYTLAHDLQVTNATVSYDLDELEKWISPFGLTLIRKRGFGIQLIGPENAKRKIVGNLIVNRLDIQMFLEAVELNIKGKTDSSEKMFGVVSKGELLKMERILFQLKEKIAFSLSDSSYIALVVHLTYAIERIKLGETITMEQNELEELMNAKEYSSALEIAGELERAFGVTIPEAEVGYITIHLRSANRKYKTEYKAQEIELETALQTKRLIAFISDKIRMDLTKNYSLYEGLIAHLEPAVSRIKENIEIYNPMKEQIKRDYFLLYMAIEEGVEKYFPGMSFSDDEIAFIVLHFGSALEIKKEEAKVKALVVCSSGIGSSKMLASRLKKELPEIESFDMSSLIELKGKDVQAYDMIVSTVPIPYENIDYIMVSPLLNEEDANQVKQYIKRKIPLILNKKRSSKEEAQQADVPDMLEAAESIGRYMEVIQDVLRHFTLAQLKTNPDHSMLLLELFQQLKKDGLIRDPEKAAVCLAEREKQGGLGIPGTNMALYHLKNDEIVLPFFKMFDLSTPYEVDGMDGNTLRMTRILVMMAPGSLSAEGSEILSAISSAIIESGESMAGFQEEGGQELYQRLNRIFFTWMKEKNIL"@en ; + sybio:accession "BSU04160"^^xsd:string , "P96574"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI"@en ; + sybio:encodedBy bo:30692 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "78849.565"^^xsd:string ; + sybio:pI "5.465919"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10897"@en ; + owl:sameAs bo:6642 . + bo:299 a owl:Class ; rdfs:label "COG0566"@en ; rdfs:subClassOf bo:194 , sybio:COG ; @@ -132614,25 +132633,6 @@ bo:20112 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "20112"@en ; owl:sameAs bo:26656 . -bo:10897 a bo:555 , owl:NamedIndividual , bo:536 , sybio:Protein , bo:554 ; - rdfs:comment "BSU04160;transcriptional regulator"@en , "Transcriptional regulator mtlR"@en ; - rdfs:label "BSU04160"@en , "mtlR"@en , "MtlR"@en , "YdaA"@en ; - sybio:AA "MYMTAREQKLLKHLLLQNRYITVTELAELMQVSTRTIHRELKSIKPLMETVGLTLDKQPGKGLKAVGSPEGKQKLLTDLSYEQHEYSADERKLLILCSLLESQEPVKLYTLAHDLQVTNATVSYDLDELEKWISPFGLTLIRKRGFGIQLIGPENAKRKIVGNLIVNRLDIQMFLEAVELNIKGKTDSSEKMFGVVSKGELLKMERILFQLKEKIAFSLSDSSYIALVVHLTYAIERIKLGETITMEQNELEELMNAKEYSSALEIAGELERAFGVTIPEAEVGYITIHLRSANRKYKTEYKAQEIELETALQTKRLIAFISDKIRMDLTKNYSLYEGLIAHLEPAVSRIKENIEIYNPMKEQIKRDYFLLYMAIEEGVEKYFPGMSFSDDEIAFIVLHFGSALEIKKEEAKVKALVVCSSGIGSSKMLASRLKKELPEIESFDMSSLIELKGKDVQAYDMIVSTVPIPYENIDYIMVSPLLNEEDANQVKQYIKRKIPLILNKKRSSKEEAQQADVPDMLEAAESIGRYMEVIQDVLRHFTLAQLKTNPDHSMLLLELFQQLKKDGLIRDPEKAAVCLAEREKQGGLGIPGTNMALYHLKNDEIVLPFFKMFDLSTPYEVDGMDGNTLRMTRILVMMAPGSLSAEGSEILSAISSAIIESGESMAGFQEEGGQELYQRLNRIFFTWMKEKNIL"@en ; - sybio:accession "BSU04160"^^xsd:string , "P96574"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI"@en ; - sybio:encodedBy bo:30692 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "78849.565"^^xsd:string ; - sybio:pI "5.465919"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10897"@en ; - owl:sameAs bo:6642 . - bo:17276 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "sialidase-2/3/4 [EC:3.2.1.18]"@en ; rdfs:label "NEU2_3_4"@en ; @@ -132643,13 +132643,32 @@ bo:17276 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357"@en ; tawny:name "17276"@en . +bo:10985 a bo:403 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Sensor histidine kinase yvrG"@en , "two-component sensor histidine kinase YvrG innvolved in cell wall processes [YvrH];BSU33210"@en ; + rdfs:label "YvrG"@en , "BSU33210"@en , "yvrG"@en ; + sybio:AA "MRLRWKFLFHFFGQMLIVILLLTVMLVASFFYLDARFSDAESNSGLTKATTDTLEAYLDVNEDGTWEVDNFLKKSVDKQHGWMQIIDSEGNTDYSYGVPKDVPGTYTKKELLSIYKTKKLHNYKLNYWAINIEDKSYLLLSGWKSKSEQLLTSVEKREQKIDSLAHYKSSTIDYIKRKKGAIYLLDSNGKILDSINSTKSERKTMNQLELLKYSSKPWNYKREISVKILNKDRWMVATVPNPVYVTDQEFNKSFLKVVLKAMFLVMAVLFMYIIWMTVWYMFRFGLPIFHTIRWLVNLSKGKLEEPRNREGRPVSKNKKGKIKQPYRFFGEIFESMDQLTETLRRDKRNREKIQATREEWIAGLSHDLKTPLSSIYGYSMMLESKQYDWSPEEVKEMGQVVREKSEYMSKLIEDLNLTYRLKNDALPIERKLTSLIPFFKNVIEDFKKNPFSEGYDISFVSKEEHIEFALDEAWFRRILENLLGNAVKHNGKGTEIQVILEQTKNHISLKVKDNGKGMDEETITHLFNRYYRGTNTKDSTAGTGLGLAIAKELVHLHNGTIHVNSRTNIGTVITILFKKQ"@en ; + sybio:accession "BSU33210"^^xsd:string , "O34989"^^xsd:string ; + sybio:biologicalProcess "16.12 : Sense"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30486 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "67796.605"^^xsd:string ; + sybio:pI "9.345528"^^xsd:string ; + sybio:productType "rc : receptor"^^xsd:string ; + sybio:relatedTo bo:10912 , bo:11506 , bo:26883 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10985"@en . + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: sucrose + 2,6-beta-D-fructosyl(n) = glucose + 2,6-beta-D-fructosyl(n+1).;"@en ; rdfs:label "sucrose:2 6-beta-D-fructan 6-beta-D-fructosyltransferase"@en , "beta-2 6-fructosyltransferase"@en , "levansucrase"@en , "beta-2 6-fructan:D-glucose 1-fructosyltransferase"@en , "sucrose 6-fructosyl transferase"@en , "GO:0050053"@en , "sucrose 6-fructosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050053"^^xsd:string ; + owl:hasValue "2.4.1.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -132657,7 +132676,7 @@ bo:17276 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.10"^^xsd:string ; + owl:hasValue "GO:0050053"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -132695,25 +132714,6 @@ bo:20200 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "20200"@en ; owl:sameAs bo:26766 . -bo:10985 a bo:403 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Sensor histidine kinase yvrG"@en , "two-component sensor histidine kinase YvrG innvolved in cell wall processes [YvrH];BSU33210"@en ; - rdfs:label "YvrG"@en , "BSU33210"@en , "yvrG"@en ; - sybio:AA "MRLRWKFLFHFFGQMLIVILLLTVMLVASFFYLDARFSDAESNSGLTKATTDTLEAYLDVNEDGTWEVDNFLKKSVDKQHGWMQIIDSEGNTDYSYGVPKDVPGTYTKKELLSIYKTKKLHNYKLNYWAINIEDKSYLLLSGWKSKSEQLLTSVEKREQKIDSLAHYKSSTIDYIKRKKGAIYLLDSNGKILDSINSTKSERKTMNQLELLKYSSKPWNYKREISVKILNKDRWMVATVPNPVYVTDQEFNKSFLKVVLKAMFLVMAVLFMYIIWMTVWYMFRFGLPIFHTIRWLVNLSKGKLEEPRNREGRPVSKNKKGKIKQPYRFFGEIFESMDQLTETLRRDKRNREKIQATREEWIAGLSHDLKTPLSSIYGYSMMLESKQYDWSPEEVKEMGQVVREKSEYMSKLIEDLNLTYRLKNDALPIERKLTSLIPFFKNVIEDFKKNPFSEGYDISFVSKEEHIEFALDEAWFRRILENLLGNAVKHNGKGTEIQVILEQTKNHISLKVKDNGKGMDEETITHLFNRYYRGTNTKDSTAGTGLGLAIAKELVHLHNGTIHVNSRTNIGTVITILFKKQ"@en ; - sybio:accession "BSU33210"^^xsd:string , "O34989"^^xsd:string ; - sybio:biologicalProcess "16.12 : Sense"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30486 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "67796.605"^^xsd:string ; - sybio:pI "9.345528"^^xsd:string ; - sybio:productType "rc : receptor"^^xsd:string ; - sybio:relatedTo bo:10912 , bo:11506 , bo:26883 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10985"@en . - bo:17364 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "oxaloacetate decarboxylase, gamma subunit [EC:4.1.1.3]"@en ; rdfs:label "OADG"@en , "E4.1.1.3G"@en ; @@ -132797,6 +132797,21 @@ bo:563 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "563"@en . +bo:29123 a owl:NamedIndividual , sybio:CDS ; + rdfs:label "BSU11800"@en ; + sybio:accession "BSU11800"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:maxExpressedIn bo:27025 ; + sybio:maxExpression "80.87"^^xsd:string ; + sybio:minExpressedIn bo:27021 ; + sybio:minExpression "0.01"^^xsd:string ; + sybio:unnormalizedMaxExpression + "1913.0"@en ; + sybio:unnormalizedMinExpression + "1.0"@en ; + tawny:name "29123"@en . + bo:17540 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]"@en ; rdfs:label "TTDB"@en ; @@ -132819,21 +132834,6 @@ bo:23398 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "23398"@en . -bo:29123 a owl:NamedIndividual , sybio:CDS ; - rdfs:label "BSU11800"@en ; - sybio:accession "BSU11800"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:maxExpressedIn bo:27025 ; - sybio:maxExpression "80.87"^^xsd:string ; - sybio:minExpressedIn bo:27021 ; - sybio:minExpression "0.01"^^xsd:string ; - sybio:unnormalizedMaxExpression - "1913.0"@en ; - sybio:unnormalizedMinExpression - "1.0"@en ; - tawny:name "29123"@en . - bo:651 a owl:Class ; rdfs:label "COG1214"@en ; rdfs:subClassOf bo:173 , sybio:COG ; @@ -132845,18 +132845,6 @@ bo:651 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "651"@en . -bo:23486 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.241"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.241"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "23486"@en . - bo:29211 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01410"@en ; rdfs:label "BSU01410"@en , "rpsM"@en ; @@ -132882,6 +132870,18 @@ bo:29211 a sybio:CDS , owl:NamedIndividual ; "1852.0"@en ; tawny:name "29211"@en . +bo:23486 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.241"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.241"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "23486"@en . + bo:33 a sybio:RNA , owl:NamedIndividual ; rdfs:comment "ribosomal RNA-23S"@en ; rdfs:label "RrnI-23S"@en , "BSU_rRNA_14"@en ; @@ -133275,7 +133275,7 @@ bo:526 a owl:Class ; rdfs:label "synthetase"@en , "polyribitol phosphate polymerase"@en , "CDPribitol ribitolphosphotransferase"@en , "teichoate synthetase"@en , "GO:0047356"@en , "polyribitol phosphate synthetase"@en , "ribitolphosphotransferase"@en , "teichoic-acid synthase"@en , "teichoate synthase"@en , "CDP-ribitol ribitolphosphotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.14"^^xsd:string ; + owl:hasValue "GO:0047356"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -133283,7 +133283,7 @@ bo:526 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047356"^^xsd:string ; + owl:hasValue "2.7.8.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -133294,11 +133294,11 @@ bo:17503 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.2.1.21"@en , "ALDB"@en , "ALDA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050569"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0050569"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -133959,6 +133959,17 @@ bo:25283 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25283"@en . +bo:25371 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G00055 <=> gl:G00055"@en , "G10609 + G00055 <=> G10619 + G00052"@en ; + sybio:accession "RN:R06029"^^xsd:string ; + sybio:catalyzedBy bo:18736 ; + sybio:catalyzingClass bo:25372 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25371"@en . + bo:10061 a bo:594 , sybio:Protein , owl:NamedIndividual , bo:593 ; rdfs:comment "ICEBs1 integrase;"@en , "putative phage integrase;BSU04800"@en ; rdfs:label "Int"@en , "YdcL"@en , "BSU04800"@en , "int"@en ; @@ -133977,17 +133988,6 @@ bo:10061 a bo:594 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10061"@en . -bo:25371 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G00055 <=> gl:G00055"@en , "G10609 + G00055 <=> G10619 + G00052"@en ; - sybio:accession "RN:R06029"^^xsd:string ; - sybio:catalyzedBy bo:18736 ; - sybio:catalyzingClass bo:25372 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25371"@en . - bo:6378 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ybgG"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -134192,11 +134192,11 @@ bo:24417 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "signal recognition particle"@en , "GO:0048500"@en ; rdfs:subClassOf , sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Signal_recognition_particle"^^xsd:string ; + owl:hasValue "GO:0048500"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0048500"^^xsd:string ; + owl:hasValue "Signal_recognition_particle"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -134240,16 +134240,6 @@ bo:31369 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "31369"@en . -bo:27879 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "epr_RBS"@en ; - sybio:NA "ATAGAAAAAGGAGATGAATC"^^xsd:string ; - sybio:begin "3939849"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3939868"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28910 ; - tawny:name "27879"@en . - bo:12569 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C7H11NO4"@en ; rdfs:label "C7H11NO4"@en , "N-Acetyl-L-glutamate 5-semialdehyde"@en , "2-Acetamido-5-oxopentanoate"@en ; @@ -134261,6 +134251,16 @@ bo:12569 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01250"@en ; tawny:name "12569"@en . +bo:27879 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "epr_RBS"@en ; + sybio:NA "ATAGAAAAAGGAGATGAATC"^^xsd:string ; + sybio:begin "3939849"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3939868"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28910 ; + tawny:name "27879"@en . + bo:7295 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BioA"@en ; rdfs:label "Q4U4Z7"@en ; @@ -134322,7 +134322,7 @@ bo:19036 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "LPXB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008915"^^xsd:string ; + owl:hasValue "COG0763"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -134330,7 +134330,7 @@ bo:19036 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0763"^^xsd:string ; + owl:hasValue "0008915"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -135045,6 +135045,16 @@ bo:1885 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1885"@en . +bo:25209 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "6-aminohexanoate transaminase - irreversible"@en ; + rdfs:label "cpd:C02378 => cpd:C02378"@en , "C02378 + C00026 <=> C06102 + C00025"@en ; + sybio:accession "RN:R05507"^^xsd:string ; + sybio:catalyzingClass bo:19588 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11739 , bo:11749 ; + tawny:name "25209"@en . + bo:1973 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU06390;hypothetical protein"@en ; rdfs:label "BSU06390"@en , "YebD"@en ; @@ -135060,16 +135070,6 @@ bo:1973 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "1973"@en . -bo:25209 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "6-aminohexanoate transaminase - irreversible"@en ; - rdfs:label "cpd:C02378 => cpd:C02378"@en , "C02378 + C00026 <=> C06102 + C00025"@en ; - sybio:accession "RN:R05507"^^xsd:string ; - sybio:catalyzingClass bo:19588 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11739 , bo:11749 ; - tawny:name "25209"@en . - bo:14491 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C28H38N2O4"@en ; rdfs:label "C28H38N2O4"@en , "Cephaeline"@en ; @@ -135243,11 +135243,11 @@ bo:13537 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.1.6"^^xsd:string ; + owl:hasValue "GO:0004076"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004076"^^xsd:string ; + owl:hasValue "2.8.1.6"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -135359,7 +135359,7 @@ bo:13713 a sybio:Compound , owl:NamedIndividual ; rdfs:label "serine-type endopeptidase"@en , "GO:0004252"@en , "blood coagulation factor"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004252"^^xsd:string ; + owl:hasValue "1683 \"serine-type endopeptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -135367,7 +135367,7 @@ bo:13713 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1683 \"serine-type endopeptidase activity\""^^xsd:string ; + owl:hasValue "GO:0004252"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -135422,15 +135422,15 @@ bo:13801 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.2"^^xsd:string ; + owl:hasValue "GO:0004340"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUCOKIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004340"^^xsd:string ; + owl:hasValue "GLUCOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -135858,15 +135858,15 @@ bo:21582 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "CTP:CMP phosphotransferase"@en , "UMP-CMP kinase"@en , "cytidylate kinase"@en , "deoxycytidylate kinase"@en , "dCMP kinase"@en , "ATP:CMP phosphotransferase"@en , "CMP kinase"@en , "pyrimidine nucleoside monophosphate kinase"@en , "deoxycytidine monophosphokinase"@en , "cytidine monophosphate kinase"@en , "ATP:UMP-CMP phosphotransferase"@en , "GO:0004127"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004127"^^xsd:string ; + owl:hasValue "CMPKI-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.14"^^xsd:string ; + owl:hasValue "GO:0004127"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CMPKI-RXN"^^xsd:string ; + owl:hasValue "2.7.4.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -136391,11 +136391,11 @@ bo:18973 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "FUT8"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008424"^^xsd:string ; + owl:hasValue "GT23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT23"^^xsd:string ; + owl:hasValue "0008424"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -136509,6 +136509,16 @@ bo:22198 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11603 , bo:11749 ; tawny:name "22198"@en . +bo:28011 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yaaH_RBS"@en ; + sybio:NA "CGTTTTTCATTCAAATTTAT"^^xsd:string ; + sybio:begin "25171"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "25152"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30826 ; + tawny:name "28011"@en . + bo:22286 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "6.3.4.8"@en ; @@ -136521,16 +136531,6 @@ bo:22286 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22286"@en . -bo:28011 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yaaH_RBS"@en ; - sybio:NA "CGTTTTTCATTCAAATTTAT"^^xsd:string ; - sybio:begin "25171"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "25152"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30826 ; - tawny:name "28011"@en . - bo:22374 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reaction on thyroglobulin - irreversible"@en ; rdfs:label "cpd:C01060 => cpd:C01060"@en , "hydrogen-peroxide oxidoreductase"@en , "Iodide"@en , "2 C01060 + C00027 <=> C01829 + C02218 + 2 C00001"@en ; @@ -136638,11 +136638,11 @@ bo:16075 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "AOC3"@en , "TYNA"@en , "E1.4.3.21"@en , "AOC2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3733"^^xsd:string ; + owl:hasValue "0008131"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008131"^^xsd:string ; + owl:hasValue "COG3733"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -136768,27 +136768,27 @@ bo:10790 a sybio:Protein , bo:320 , owl:NamedIndividual ; rdfs:label "hexose transport"@en , "GO:0008645"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508071 \"Hexose uptake\""^^xsd:string ; + owl:hasValue "470424 \"Hexose uptake\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "189200 \"Hexose uptake\""^^xsd:string ; + owl:hasValue "449305 \"Hexose uptake\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008645"^^xsd:string ; + owl:hasValue "488102 \"Hexose uptake\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449305 \"Hexose uptake\""^^xsd:string ; + owl:hasValue "GO:0008645"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488102 \"Hexose uptake\""^^xsd:string ; + owl:hasValue "189200 \"Hexose uptake\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470424 \"Hexose uptake\""^^xsd:string ; + owl:hasValue "508071 \"Hexose uptake\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -136838,11 +136838,11 @@ bo:280 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARABISOM-RXN"^^xsd:string ; + owl:hasValue "5.3.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.4"^^xsd:string ; + owl:hasValue "ARABISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -136922,7 +136922,7 @@ bo:4386 a sybio:Operon , owl:NamedIndividual ; rdfs:label "methionine sulfoxide reductase"@en , "MsrB"@en , "GO:0033743"@en , "peptide-methionine (R)-S-oxide reductase"@en , "selenoprotein R"@en , "SelR"@en , "methionine sulfoxide reductase B"@en , "pMRsr"@en , "SelX"@en , "pMSR"@en , "methionine S-oxide reductase"@en , "peptide-methionine:thioredoxin-disulfide S-oxidoreductase [methionine"@en , "PilB"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.4.12-RXN"^^xsd:string ; + owl:hasValue "1.8.4.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -136930,7 +136930,7 @@ bo:4386 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.4.12"^^xsd:string ; + owl:hasValue "1.8.4.12-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -136948,25 +136948,13 @@ bo:4474 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4473 ; tawny:name "4474"@en . - - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; - rdfs:comment "Interacting selectively and non-covalently with magnesium (Mg) ions."@en ; - rdfs:label "magnesium binding"@en , "GO:0000287"@en , "magnesium ion binding"@en ; - rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000287"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose."@en ; rdfs:label "galactose metabolic process"@en , "GO:0006012"@en , "galactose metabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GALACTMETAB-PWY"^^xsd:string ; + owl:hasValue "Galactose"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -136974,12 +136962,32 @@ bo:4474 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Galactose"^^xsd:string ; + owl:hasValue "GALACTMETAB-PWY"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + + + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; + rdfs:comment "Interacting selectively and non-covalently with magnesium (Mg) ions."@en ; + rdfs:label "magnesium binding"@en , "GO:0000287"@en , "magnesium ion binding"@en ; + rdfs:subClassOf sybio:MolecularFunction , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0000287"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4562 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydfO"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30813 ; + sybio:operonGenes "ydfO"@en ; + tawny:name "4562"@en . + bo:16215 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "phenol 2-monooxygenase [EC:1.14.13.7]"@en ; rdfs:label "E1.14.13.7"@en ; @@ -136990,14 +136998,6 @@ bo:16215 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03380"@en ; tawny:name "16215"@en . -bo:4562 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydfO"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30813 ; - sybio:operonGenes "ydfO"@en ; - tawny:name "4562"@en . - bo:16303 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "benzoate 4-monooxygenase [EC:1.14.13.12]"@en ; rdfs:label "E1.14.13.12"@en ; @@ -137154,11 +137154,11 @@ bo:16126 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PAH"@en , "PHHA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3186"^^xsd:string ; + owl:hasValue "0004505"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004505"^^xsd:string ; + owl:hasValue "COG3186"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -137166,17 +137166,6 @@ bo:16126 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00500"@en ; tawny:name "16126"@en . -bo:19941 a owl:NamedIndividual , sybio:Enzyme ; - rdfs:comment "derived enzyme"@en ; - rdfs:label "yrhE"@en ; - sybio:accession "16079776"^^xsd:string , "Q795Y4"^^xsd:string , "937569"^^xsd:string ; - sybio:catalyzingClass bo:19554 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - tawny:name "19941"@en ; - owl:sameAs bo:26537 . - bo:25799 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "4.2.3.20"@en ; @@ -137189,6 +137178,17 @@ bo:25799 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25799"@en . +bo:19941 a owl:NamedIndividual , sybio:Enzyme ; + rdfs:comment "derived enzyme"@en ; + rdfs:label "yrhE"@en ; + sybio:accession "16079776"^^xsd:string , "Q795Y4"^^xsd:string , "937569"^^xsd:string ; + sybio:catalyzingClass bo:19554 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + tawny:name "19941"@en ; + owl:sameAs bo:26537 . + bo:10489 a sybio:Protein , bo:782 , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein yvsG"@en , "putative membrane hydrolase;BSU33350"@en ; rdfs:label "YvsG"@en , "BSU33350"@en , "yvsG"@en ; @@ -137207,6 +137207,16 @@ bo:10489 a sybio:Protein , bo:782 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10489"@en . +bo:25887 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C16339 <=> cpd:C16339"@en , "C16339 + C00001 <=> C00010 + C16317"@en ; + sybio:accession "RN:R07902"^^xsd:string ; + sybio:catalyzingClass bo:20814 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25887"@en . + bo:10577 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Antilisterial bacteriocin subtilosin biosynthesis protein albD"@en , "putative integral inner membrane protein involved in subtilosin production and immunity;BSU37400;"@en ; rdfs:label "AlbD"@en , "albD"@en , "YwhP"@en , "BSU37400"@en ; @@ -137224,15 +137234,16 @@ bo:10577 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "10577"@en . -bo:25887 a sybio:Reaction , owl:NamedIndividual ; +bo:25975 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; - rdfs:label "cpd:C16339 <=> cpd:C16339"@en , "C16339 + C00001 <=> C00010 + C16317"@en ; - sybio:accession "RN:R07902"^^xsd:string ; - sybio:catalyzingClass bo:20814 ; + rdfs:label "C00448 + C00001 <=> C16143 + C00013"@en , "cpd:C00448 <=> cpd:C00448"@en , "2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase[(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol-forming]"@en ; + sybio:accession "RN:R07647"^^xsd:string ; + sybio:catalyzedBy bo:18646 ; + sybio:catalyzingClass bo:25976 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25887"@en . + tawny:name "25975"@en . bo:10665 a owl:NamedIndividual , sybio:Protein , bo:462 ; rdfs:comment "Probable glucose 1-dehydrogenase;Uncharacterized oxidoreductase yxnA"@en , "BSU40000;putative oxidoreductase"@en ; @@ -137252,17 +137263,6 @@ bo:10665 a owl:NamedIndividual , sybio:Protein , bo:462 ; sybio:taxId "224308"@en ; tawny:name "10665"@en . -bo:25975 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C00448 + C00001 <=> C16143 + C00013"@en , "cpd:C00448 <=> cpd:C00448"@en , "2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase[(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol-forming]"@en ; - sybio:accession "RN:R07647"^^xsd:string ; - sybio:catalyzedBy bo:18646 ; - sybio:catalyzingClass bo:25976 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25975"@en . - bo:17044 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "1-phosphatidylinositol-5-phosphate 4-kinase [EC:2.7.1.149]"@en ; rdfs:label "E2.7.1.149"@en , "PIP4K"@en ; @@ -137534,17 +137534,6 @@ bo:11494 a owl:NamedIndividual , bo:988 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11494"@en . -bo:11582 a owl:Class ; - rdfs:comment "Abstract referenced KO Pathway"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:MAP00530"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11582"@en . - a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; rdfs:comment "An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine.;"@en ; @@ -137601,6 +137590,17 @@ bo:26892 a bo:271 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26892"@en . +bo:11582 a owl:Class ; + rdfs:comment "Abstract referenced KO Pathway"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:MAP00530"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11582"@en . + bo:11670 a owl:Class ; rdfs:comment "Abstract referenced KO Pathway"@en ; rdfs:subClassOf sybio:Pathway ; @@ -138015,6 +138015,24 @@ bo:30257 a sybio:CDS , owl:NamedIndividual ; "0.0"@en ; tawny:name "30257"@en . +bo:26767 a sybio:Protein , bo:815 , owl:NamedIndividual ; + rdfs:comment "derived protein;Pyrophosphatase ppaX"@en , "P-Ser-HPr phosphatase;BSU34970"@en ; + rdfs:label "ppaX"@en , "BSU34970"@en , "PpaX"@en , "HprP"@en , "hprP"@en , "YvoE"@en ; + sybio:AA "MSDKQVTTILFDLDGTLINTNELIIASFLHTLEHYYPSKYKREDVLAFIGPSLFDTFSSMDPDKCEDMIAMYRAYNHDMHDSLVTEYETVYETLDALKKAGFTLGIVTTKLRDTVNMGLKLTGIGEFFETVVTLDDVTNAKPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKTAGVAWTIKGPEMLAKHEPDFMLEKMSDLLQIVGVK"@en ; + sybio:accession "Q9JMQ2"^^xsd:string , "16080550"^^xsd:string , "BSU34970"^^xsd:string , "936613"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32971 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "3.8 : Protein modification"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "24002.585"^^xsd:string ; + sybio:pI "4.676689"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26767"@en . + bo:11457 a owl:NamedIndividual , sybio:Protein , bo:387 ; rdfs:comment "RNA polymerase sigma factor sigV"@en , "BSU27120;RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma(V));"@en ; rdfs:label "SigV"@en , "sigV"@en , "BSU27120"@en ; @@ -138035,24 +138053,6 @@ bo:11457 a owl:NamedIndividual , sybio:Protein , bo:387 ; tawny:name "11457"@en ; owl:sameAs bo:2611 . -bo:26767 a sybio:Protein , bo:815 , owl:NamedIndividual ; - rdfs:comment "derived protein;Pyrophosphatase ppaX"@en , "P-Ser-HPr phosphatase;BSU34970"@en ; - rdfs:label "ppaX"@en , "BSU34970"@en , "PpaX"@en , "HprP"@en , "hprP"@en , "YvoE"@en ; - sybio:AA "MSDKQVTTILFDLDGTLINTNELIIASFLHTLEHYYPSKYKREDVLAFIGPSLFDTFSSMDPDKCEDMIAMYRAYNHDMHDSLVTEYETVYETLDALKKAGFTLGIVTTKLRDTVNMGLKLTGIGEFFETVVTLDDVTNAKPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKTAGVAWTIKGPEMLAKHEPDFMLEKMSDLLQIVGVK"@en ; - sybio:accession "Q9JMQ2"^^xsd:string , "16080550"^^xsd:string , "BSU34970"^^xsd:string , "936613"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32971 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "3.8 : Protein modification"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "24002.585"^^xsd:string ; - sybio:pI "4.676689"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26767"@en . - bo:6183 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yxxF_terminator"@en ; sybio:NA "TAAAAAGGCCTATGCGGCCTTTTTTTGTTTTAGGT"^^xsd:string ; @@ -138246,11 +138246,11 @@ bo:18100 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "CHLD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016851"^^xsd:string ; + owl:hasValue "COG1240"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1240"^^xsd:string ; + owl:hasValue "0016851"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -138542,16 +138542,6 @@ bo:31350 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "31350"@en . -bo:27860 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "mrgA_RBS_upstream"@en ; - sybio:NA "AGAT"^^xsd:string ; - sybio:begin "3383541"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3383544"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27859 ; - tawny:name "27860"@en . - bo:12550 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C10H12N2O5S"@en ; rdfs:label "7-Aminocephalosporanic acid"@en , "7-Aminocephalosporinic acid"@en , "C10H12N2O5S"@en , "(7R)-7-Aminocephalosporanate"@en , "7-ACA"@en ; @@ -138562,6 +138552,16 @@ bo:12550 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C07756"@en ; tawny:name "12550"@en . +bo:27860 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "mrgA_RBS_upstream"@en ; + sybio:NA "AGAT"^^xsd:string ; + sybio:begin "3383541"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3383544"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27859 ; + tawny:name "27860"@en . + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + D-xylulose = ADP + D-xylulose 5-phosphate."@en ; @@ -138572,11 +138572,11 @@ bo:12550 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "XYLULOKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0004856"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004856"^^xsd:string ; + owl:hasValue "XYLULOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -138638,23 +138638,6 @@ bo:30308 a sybio:CDS , owl:NamedIndividual ; "49.0"@en ; tawny:name "30308"@en . -bo:26818 a sybio:Protein , bo:1855 , owl:NamedIndividual ; - rdfs:comment "spermidine synthase; polyamine metabolism;BSU37500"@en , "derived protein;Spermidine synthase;"@en ; - rdfs:label "speE"@en , "YwhF"@en , "BSU37500"@en , "SpeE"@en ; - sybio:AA "LSELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYDPLAVEDSRFFDIETKYYTKDIHKAAFVLPKFVSDLIK"@en ; - sybio:accession "BSU37500"^^xsd:string , "16080802"^^xsd:string , "P70998"^^xsd:string , "937075"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32667 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "31316.675"^^xsd:string ; - sybio:pI "5.219826"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26818"@en . - bo:11508 a bo:512 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative long-chain fatty-acid-CoA ligase;BSU10360"@en , "Uncharacterized acyl--CoA ligase yhfT"@en ; rdfs:label "YhfT"@en , "yhfT"@en , "BSU10360"@en ; @@ -138673,6 +138656,23 @@ bo:11508 a bo:512 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11508"@en . +bo:26818 a sybio:Protein , bo:1855 , owl:NamedIndividual ; + rdfs:comment "spermidine synthase; polyamine metabolism;BSU37500"@en , "derived protein;Spermidine synthase;"@en ; + rdfs:label "speE"@en , "YwhF"@en , "BSU37500"@en , "SpeE"@en ; + sybio:AA "LSELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYDPLAVEDSRFFDIETKYYTKDIHKAAFVLPKFVSDLIK"@en ; + sybio:accession "BSU37500"^^xsd:string , "16080802"^^xsd:string , "P70998"^^xsd:string , "937075"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32667 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "31316.675"^^xsd:string ; + sybio:pI "5.219826"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26818"@en . + bo:6234 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yxaI"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -139903,19 +139903,19 @@ bo:2394 a sybio:Protein , owl:NamedIndividual ; rdfs:label "adenylyl-sulfate kinase"@en , "adenosine-5'-phosphosulfate 3'-phosphotransferase"@en , "ATP:adenylyl-sulfate 3'-phosphotransferase"@en , "APS kinase"@en , "adenosine-5'-phosphosulfate-3'-phosphokinase"@en , "adenosine phosphosulfate kinase"@en , "adenosine-5'-phosphosulphate 3'-phosphotransferase"@en , "adenosine phosphosulfokinase"@en , "adenylylsulfate kinase"@en , "adenylyl-sulphate kinase"@en , "GO:0004020"@en , "adenosine 5'-phosphosulfate kinase"@en , "5'-phosphoadenosine sulfate kinase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.25"^^xsd:string ; + owl:hasValue "GO:0004020"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENYLYLSULFKIN-RXN"^^xsd:string ; + owl:hasValue "7077 \"adenylylsulfate kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7077 \"adenylylsulfate kinase activity\""^^xsd:string ; + owl:hasValue "2.7.1.25"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004020"^^xsd:string ; + owl:hasValue "ADENYLYLSULFKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -140614,11 +140614,11 @@ bo:17824 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.5.4.27"@en , "MCH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018759"^^xsd:string ; + owl:hasValue "COG3252"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3252"^^xsd:string ; + owl:hasValue "0018759"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -140900,11 +140900,11 @@ bo:18565 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "LSS"@en , "ERG7"@en , "E5.4.99.7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000250"^^xsd:string ; + owl:hasValue "COG1657"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1657"^^xsd:string ; + owl:hasValue "0000250"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -141243,6 +141243,17 @@ bo:10294 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10294"@en . +bo:25692 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "delta8,24-Cholestadien-3beta-ol delta7-delta8-isomerase"@en , "C05437 <=> C05439"@en , "cpd:C05437 <=> cpd:C05437"@en ; + sybio:accession "RN:R04804"^^xsd:string ; + sybio:catalyzedBy bo:19069 ; + sybio:catalyzingClass bo:25365 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25692"@en . + bo:10382 a owl:NamedIndividual , sybio:Protein , bo:858 ; rdfs:comment "Putative aminopeptidase ysdC"@en , "putative endo-1,4-beta-glucanase;BSU28820"@en ; rdfs:label "ysdC"@en , "BSU28820"@en , "YsdC"@en ; @@ -141261,17 +141272,6 @@ bo:10382 a owl:NamedIndividual , sybio:Protein , bo:858 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10382"@en . -bo:25692 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "delta8,24-Cholestadien-3beta-ol delta7-delta8-isomerase"@en , "C05437 <=> C05439"@en , "cpd:C05437 <=> cpd:C05437"@en ; - sybio:accession "RN:R04804"^^xsd:string ; - sybio:catalyzedBy bo:19069 ; - sybio:catalyzingClass bo:25365 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25692"@en . - bo:6699 a sybio:TF , owl:NamedIndividual ; rdfs:label "BSU04100"@en ; sybio:accession "BSU04100"^^xsd:string ; @@ -141296,6 +141296,16 @@ bo:6699 a sybio:TF , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:25780 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "lycopene epsilon cyclase - reversible"@en ; + rdfs:label "cpd:C05432 <=> cpd:C05432"@en , "C05432 <=> C08586"@en ; + sybio:accession "RN:R06963"^^xsd:string ; + sybio:catalyzedBy bo:18499 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25780"@en . + bo:10470 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU32469;conserved hypothetical protein"@en , "UPF0752 membrane protein yuzJ"@en ; rdfs:label "BSU32469"@en , "YuzJ"@en , "yuzJ"@en ; @@ -141312,16 +141322,6 @@ bo:10470 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10470"@en . -bo:25780 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "lycopene epsilon cyclase - reversible"@en ; - rdfs:label "cpd:C05432 <=> cpd:C05432"@en , "C05432 <=> C08586"@en ; - sybio:accession "RN:R06963"^^xsd:string ; - sybio:catalyzedBy bo:18499 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25780"@en . - bo:6787 a sybio:Protein , owl:NamedIndividual , bo:1805 ; rdfs:comment "BSU35880;capsular polyglutamate synthetase"@en ; rdfs:label "YwtB"@en , "BSU35880"@en , "CapA"@en ; @@ -141724,6 +141724,16 @@ bo:10169 a bo:820 , bo:1256 , owl:NamedIndividual , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "10169"@en . +bo:25567 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label " => "@en , "C00001 + G00171 <=> C00031 + G00010"@en ; + sybio:accession "RN:R05980"^^xsd:string ; + sybio:catalyzingClass bo:25566 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25567"@en . + bo:10257 a bo:1326 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU21980;putative integral inner membrane protein"@en , "Uncharacterized protein ypdP"@en ; rdfs:label "YpdP"@en , "ypdP"@en , "BSU21980"@en ; @@ -141741,16 +141751,6 @@ bo:10257 a bo:1326 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10257"@en . -bo:25567 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label " => "@en , "C00001 + G00171 <=> C00031 + G00010"@en ; - sybio:accession "RN:R05980"^^xsd:string ; - sybio:catalyzingClass bo:25566 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25567"@en . - bo:25655 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.2.-.-"@en ; @@ -142040,6 +142040,25 @@ bo:32871 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu22130"@en ; tawny:name "32871"@en . +bo:26396 a bo:1234 , bo:1235 , owl:NamedIndividual , sybio:Protein , bo:1236 ; + rdfs:comment "Aconitate hydratase;derived protein"@en , "BSU18000;aconitate hydratase (aconitase)"@en ; + rdfs:label "BSU18000"@en , "citB"@en , "CitB"@en ; + sybio:AA "MANEQKTAAKDVFQARKTFTTNGKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLRQVDGFVIKKEHVENLAKWGTAELKDIDVPFKPSRVILQDFTGVPAVVDLASLRKAMAAVGGDPDKINPEIPVDLVIDHSVQVDKAGTEDALAVNMDLEFERNAERYKFLSWAKKAFNNYQAVPPATGIVHQVNLEFLASVVHAIEEDGELVTYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQPSYFPVPEVIGAKLVGKLPNGTTATDLALKVTQVLREKGVVGKFVEFFGPGIAELPLADRATIANMAPEYGATCGFFPVDEEALNYLRLTGRDPEHIDVVEAYCRSNGLFYTPDAEDPQFTDVVEIDLSQIEANLSGPKRPQDLIPLSAMQETFKKQLVSPAGNQGFGLNAEEENKEIKFKLLNGEETVMKTGAIAIAAITSCTNTSNPYVLIGAGLVAKKAVELGLKVPNYVKTSLAPGSKVVTGYLVNSGLLPYMKELGFNLVGYGCTTCIGNSGPLSPEIEEAVAKNDLLITSVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGTVNINLKTDPIGVGKDGQNVYFNDIWPSMDEINALVKQTVTPELFRKEYETVFDDNKRWNEIETTDEALYKWDNDSTYIQNPPFFEEMSVEPGKVEPLKGLRVVGKFGDSVTTDHISPAGAIGKDTPAGKYLQEKGVSPRDFNSYGSRRGNHEVMMRGTFANIRIKNQIAPGTEGGFTTYWPTGEVTSIYDACMKYKEDKTGLVVLAGKDYGMGSSRDWAAKGTNLLGIRTVIAESFERIHRSNLVFMGVLPLQFKQGENADTLGLTGKEVIEVDVDETVRPRDLVTVRAINEDGNVTTFEAVVRFDSEVEIDYYRHGGILQMVLREKMKQS"@en ; + sybio:accession "16078863"^^xsd:string , "BSU18000"^^xsd:string , "938140"^^xsd:string , "P09339"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32725 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "2.1.3 : TCA cycle"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "99329.95"^^xsd:string ; + sybio:pI "5.085884"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26600 , bo:9580 , bo:26601 , bo:26502 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26396"@en . + bo:11086 a owl:NamedIndividual , sybio:Protein , bo:1799 ; rdfs:comment "teichoic acid precursors permease;BSU35710;;"@en , "Teichoic acid translocation permease protein tagG"@en ; rdfs:label "BSU35710"@en , "tagG"@en , "TagG"@en ; @@ -142059,24 +142078,25 @@ bo:11086 a owl:NamedIndividual , sybio:Protein , bo:1799 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11086"@en . -bo:26396 a bo:1234 , bo:1235 , owl:NamedIndividual , sybio:Protein , bo:1236 ; - rdfs:comment "Aconitate hydratase;derived protein"@en , "BSU18000;aconitate hydratase (aconitase)"@en ; - rdfs:label "BSU18000"@en , "citB"@en , "CitB"@en ; - sybio:AA "MANEQKTAAKDVFQARKTFTTNGKTYHYYSLKALEDSGIGKVSKLPYSIKVLLESVLRQVDGFVIKKEHVENLAKWGTAELKDIDVPFKPSRVILQDFTGVPAVVDLASLRKAMAAVGGDPDKINPEIPVDLVIDHSVQVDKAGTEDALAVNMDLEFERNAERYKFLSWAKKAFNNYQAVPPATGIVHQVNLEFLASVVHAIEEDGELVTYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQPSYFPVPEVIGAKLVGKLPNGTTATDLALKVTQVLREKGVVGKFVEFFGPGIAELPLADRATIANMAPEYGATCGFFPVDEEALNYLRLTGRDPEHIDVVEAYCRSNGLFYTPDAEDPQFTDVVEIDLSQIEANLSGPKRPQDLIPLSAMQETFKKQLVSPAGNQGFGLNAEEENKEIKFKLLNGEETVMKTGAIAIAAITSCTNTSNPYVLIGAGLVAKKAVELGLKVPNYVKTSLAPGSKVVTGYLVNSGLLPYMKELGFNLVGYGCTTCIGNSGPLSPEIEEAVAKNDLLITSVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGTVNINLKTDPIGVGKDGQNVYFNDIWPSMDEINALVKQTVTPELFRKEYETVFDDNKRWNEIETTDEALYKWDNDSTYIQNPPFFEEMSVEPGKVEPLKGLRVVGKFGDSVTTDHISPAGAIGKDTPAGKYLQEKGVSPRDFNSYGSRRGNHEVMMRGTFANIRIKNQIAPGTEGGFTTYWPTGEVTSIYDACMKYKEDKTGLVVLAGKDYGMGSSRDWAAKGTNLLGIRTVIAESFERIHRSNLVFMGVLPLQFKQGENADTLGLTGKEVIEVDVDETVRPRDLVTVRAINEDGNVTTFEAVVRFDSEVEIDYYRHGGILQMVLREKMKQS"@en ; - sybio:accession "16078863"^^xsd:string , "BSU18000"^^xsd:string , "938140"^^xsd:string , "P09339"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; +bo:26484 a owl:NamedIndividual , bo:598 , sybio:Protein ; + rdfs:comment "BSU23550;NAD-dependent malic enzyme (conversion of malate into pyruvate)"@en , "Probable NAD-dependent malic enzyme 1;derived protein"@en ; + rdfs:label "conversion of malate into pyruvate"@en , "MleA"@en , "YqkJ"@en , "mleA"@en , "BSU23550"@en , "yqkJ"@en ; + sybio:AA "MIAKHMIRTLMIETPSVPGNLGRVATAIGLLGGDIGEVETVKVGPNYTMRNITVQVENEEQLQEVIAAVQALGEGIRLHTVSDEVLSAHEGGKIQMKSKMPIRSLAELGRVYTPGVADVCRLIEKEPEKASIYTTISNSVAIVTDGTAILGLGNIGSVAGMPVMEGKAALFDQLAGISGIPILLDTSDPEEIIKTVKHISPGFSGILLEDIGSPHCFEIEDRLKEELNIPVMHDDQHGTAVVTLAAAISACRSAGVDLKEAKVGQIGLGAAGVAICRMFMAYGVNAVYGTDKSESAMNRLEQYGGQAVSSIEELMETCDIVIATTGVPGLIKPAFVRSGQVILALSNPKPEIEPEAALQAGAAYAADGRSVNNVLGFPGIFRGALNAKSTEINHDMLVAAAEAIAACTKQGDVVPQPLDSKVHHAVAAAVEHAALTAVK"@en ; + sybio:accession "938725"^^xsd:string , "P54572"^^xsd:string , "16079412"^^xsd:string , "BSU23550"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32725 ; + sybio:encodedBy bo:32892 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; + sybio:expressedBy bo:26252 ; + sybio:hasFunction , , , , , , ; sybio:hasRole "2.1.3 : TCA cycle"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "99329.95"^^xsd:string ; - sybio:pI "5.085884"^^xsd:string ; + sybio:molecularWeight "45887.85"^^xsd:string ; + sybio:pI "5.068153"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26600 , bo:9580 , bo:26601 , bo:26502 ; + sybio:relatedTo bo:26602 , bo:26820 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "26396"@en . + tawny:name "26484"@en . bo:11174 a sybio:Protein , bo:356 , owl:NamedIndividual , bo:353 ; rdfs:comment "Probable amino-acid import ATP-binding protein yxeO"@en , "BSU39480;putative ABC transporter (ATP-binding protein)"@en ; @@ -142098,26 +142118,6 @@ bo:11174 a sybio:Protein , bo:356 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "11174"@en . -bo:26484 a owl:NamedIndividual , bo:598 , sybio:Protein ; - rdfs:comment "BSU23550;NAD-dependent malic enzyme (conversion of malate into pyruvate)"@en , "Probable NAD-dependent malic enzyme 1;derived protein"@en ; - rdfs:label "conversion of malate into pyruvate"@en , "MleA"@en , "YqkJ"@en , "mleA"@en , "BSU23550"@en , "yqkJ"@en ; - sybio:AA "MIAKHMIRTLMIETPSVPGNLGRVATAIGLLGGDIGEVETVKVGPNYTMRNITVQVENEEQLQEVIAAVQALGEGIRLHTVSDEVLSAHEGGKIQMKSKMPIRSLAELGRVYTPGVADVCRLIEKEPEKASIYTTISNSVAIVTDGTAILGLGNIGSVAGMPVMEGKAALFDQLAGISGIPILLDTSDPEEIIKTVKHISPGFSGILLEDIGSPHCFEIEDRLKEELNIPVMHDDQHGTAVVTLAAAISACRSAGVDLKEAKVGQIGLGAAGVAICRMFMAYGVNAVYGTDKSESAMNRLEQYGGQAVSSIEELMETCDIVIATTGVPGLIKPAFVRSGQVILALSNPKPEIEPEAALQAGAAYAADGRSVNNVLGFPGIFRGALNAKSTEINHDMLVAAAEAIAACTKQGDVVPQPLDSKVHHAVAAAVEHAALTAVK"@en ; - sybio:accession "938725"^^xsd:string , "P54572"^^xsd:string , "16079412"^^xsd:string , "BSU23550"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32892 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:expressedBy bo:26252 ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "2.1.3 : TCA cycle"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "45887.85"^^xsd:string ; - sybio:pI "5.068153"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26602 , bo:26820 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26484"@en . - bo:30062 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21310"@en ; rdfs:label "BSU21310"@en , "yozP"@en ; @@ -142143,26 +142143,6 @@ bo:30062 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30062"@en . -bo:11262 a sybio:Protein , bo:229 , bo:228 , owl:NamedIndividual ; - rdfs:comment "Uncharacterized protein yabE"@en , "BSU00400;putative cell wall shaping enzyme"@en ; - rdfs:label "BSU00400"@en , "yabE"@en , "YabE"@en ; - sybio:AA "LGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKVILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDEDKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQDQIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDKIKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEGKLKKHFEVVKENGKEVSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVVSRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVHVEGYGYAIAADTGSAIKGNKIDVFFPEKSSAYRWGNKTVKIKILN"@en ; - sybio:accession "BSU00400"^^xsd:string , "P37546"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30918 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.1 : Cell wall"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "47690.44"^^xsd:string ; - sybio:pI "8.942314"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:relatedTo bo:11314 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11262"@en . - bo:26572 a bo:1570 , bo:1507 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "glutamate racemase;BSU28390"@en , "Glutamate racemase;Glutamate racemase 1;derived protein"@en ; rdfs:label "racE"@en , "RacE"@en , "BSU28390"@en ; @@ -142183,25 +142163,25 @@ bo:26572 a bo:1570 , bo:1507 , owl:NamedIndividual , sybio sybio:taxId "224308"@en ; tawny:name "26572"@en . -bo:11350 a sybio:Protein , bo:353 , owl:NamedIndividual , bo:184 ; - rdfs:comment "BSU02980;glycine betaine ABC transporter (ATP-binding protein);"@en , "Glycine betaine transport ATP-binding protein opuAA"@en ; - rdfs:label "OpuAA"@en , "BSU02980"@en , "opuAA"@en ; - sybio:AA "MSVDEKPIKIKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSKDQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKQERQQKALESLKLVGLEGFEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMNPSNEYVEKFVEDVDLSKVLTAGHIMKRAETVRIDKGPRVALTLMKNLGISSIYAVDKQKKLLGVIYASDAKKAAESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANIPIAVVDEKQRMKGIVVRGALIGALAGNNEYINAEGTNEQTQDPSAQEVK"@en ; - sybio:accession "BSU02980"^^xsd:string , "P46920"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; +bo:11262 a sybio:Protein , bo:229 , bo:228 , owl:NamedIndividual ; + rdfs:comment "Uncharacterized protein yabE"@en , "BSU00400;putative cell wall shaping enzyme"@en ; + rdfs:label "BSU00400"@en , "yabE"@en , "YabE"@en ; + sybio:AA "LGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKVILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDEDKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQDQIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDKIKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEGKLKKHFEVVKENGKEVSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVVSRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVHVEGYGYAIAADTGSAIKGNKIDVFFPEKSSAYRWGNKTVKIKILN"@en ; + sybio:accession "BSU00400"^^xsd:string , "P37546"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30781 ; + sybio:encodedBy bo:30918 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:hasFunction , ; + sybio:hasRole "1.1 : Cell wall"^^xsd:string ; sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "46466.545"^^xsd:string ; - sybio:pI "5.28199"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:relatedTo bo:11352 , bo:11351 ; + sybio:locatedIn ; + sybio:molecularWeight "47690.44"^^xsd:string ; + sybio:pI "8.942314"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:relatedTo bo:11314 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11350"@en . + tawny:name "11262"@en . a owl:Class ; @@ -142257,6 +142237,26 @@ bo:26660 a owl:NamedIndividual , sybio:Protein , bo:887 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26660"@en . +bo:11350 a sybio:Protein , bo:353 , owl:NamedIndividual , bo:184 ; + rdfs:comment "BSU02980;glycine betaine ABC transporter (ATP-binding protein);"@en , "Glycine betaine transport ATP-binding protein opuAA"@en ; + rdfs:label "OpuAA"@en , "BSU02980"@en , "opuAA"@en ; + sybio:AA "MSVDEKPIKIKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSKDQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKQERQQKALESLKLVGLEGFEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMNPSNEYVEKFVEDVDLSKVLTAGHIMKRAETVRIDKGPRVALTLMKNLGISSIYAVDKQKKLLGVIYASDAKKAAESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANIPIAVVDEKQRMKGIVVRGALIGALAGNNEYINAEGTNEQTQDPSAQEVK"@en ; + sybio:accession "BSU02980"^^xsd:string , "P46920"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30781 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "46466.545"^^xsd:string ; + sybio:pI "5.28199"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:relatedTo bo:11352 , bo:11351 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11350"@en . + bo:31829 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU38570"@en ; rdfs:label "BSU38570"@en , "licA"@en , "celC"@en ; @@ -142322,18 +142322,18 @@ bo:31917 a sybio:CDS , owl:NamedIndividual ; a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: inosine 5'-phosphate + NH3 + NADP+ = guanosine 5'-phosphate + NADPH + H+."@en ; - rdfs:label "NADPH2:guanosine-5'-phosphate oxidoreductase"@en , "GO:0003920"@en , "NADPH:guanosine-5'-phosphate oxidoreductase"@en , "GMP reductase"@en , "guanosine 5'-monophosphate reductase"@en , "guanosine 5'-phosphate reductase"@en , "guanosine 5'-monophosphate oxidoreductase"@en , "guanylate reductase"@en , "inosine-5'-phosphate:NADP+ oxidoreductase"@en , "guanosine monophosphate reductase"@en , "NADPH:GMP oxidoreductase"@en ; + rdfs:label "NADPH2:guanosine-5'-phosphate oxidoreductase"@en , "GO:0003920"@en , "GMP reductase"@en , "NADPH:guanosine-5'-phosphate oxidoreductase"@en , "guanosine 5'-monophosphate reductase"@en , "guanosine 5'-phosphate reductase"@en , "guanosine 5'-monophosphate oxidoreductase"@en , "guanylate reductase"@en , "inosine-5'-phosphate:NADP+ oxidoreductase"@en , "guanosine monophosphate reductase"@en , "NADPH:GMP oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003920"^^xsd:string ; + owl:hasValue "GMP-REDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.7.1.7"^^xsd:string ; + owl:hasValue "GO:0003920"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GMP-REDUCT-RXN"^^xsd:string ; + owl:hasValue "1.7.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -142458,10 +142458,6 @@ bo:13858 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "Catalysis of the reaction: L-histidine = urocanate + NH3."@en ; rdfs:label "GO:0004397"@en , "histidine alpha-deaminase"@en , "L-histidine ammonia-lyase"@en , "histidase"@en , "histidine ammonia-lyase"@en , "histidinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004397"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "HISTIDINE-AMMONIA-LYASE-RXN"^^xsd:string ; owl:onProperty sybio:accession @@ -142474,6 +142470,10 @@ bo:13858 a owl:NamedIndividual , sybio:Compound ; owl:hasValue "10604 \"histidine ammonia-lyase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0004397"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -142923,11 +142923,11 @@ bo:14863 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E3.1.3.-"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0637"^^xsd:string ; + owl:hasValue "COG2045"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2045"^^xsd:string ; + owl:hasValue "COG0637"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -143117,11 +143117,11 @@ sybio:KOPR a owl:Class . rdfs:label "dual-specificity protein kinase"@en , "ATP:protein phosphotransferase"@en , "Mps1p"@en , "ADK1"@en , "dual-specificity kinase"@en , "protein serine/threonine/tyrosine kinase"@en , "GO:0004712"@en , "CLK1"@en , "protein threonine tyrosine kinase"@en , "Arabidopsis dual specificity kinase 1"@en , "dDYRK2"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.112.1"^^xsd:string ; + owl:hasValue "GO:0004712"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004712"^^xsd:string ; + owl:hasValue "2.7.112.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -143289,11 +143289,11 @@ bo:14914 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E4.2.1.6"@en , "DGOAB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008869"^^xsd:string ; + owl:hasValue "COG1441"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1441"^^xsd:string ; + owl:hasValue "0008869"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -143475,11 +143475,11 @@ bo:15655 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004485"^^xsd:string ; + owl:hasValue "COG0825"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0825"^^xsd:string ; + owl:hasValue "0004485"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -143487,6 +143487,19 @@ bo:15655 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01967+K01968+K01969"@en ; tawny:name "15655"@en . + + a owl:NamedIndividual , owl:Class ; + rdfs:comment "Any process that modulates the frequency, rate or extent of DNA repair."@en ; + rdfs:label "regulation of DNA repair"@en , "GO:0006282"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006282"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:regulatedBy . + bo:15743 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "homoisocitrate dehydrogenase [EC:1.1.1.87]"@en ; rdfs:label "E1.1.1.87"@en ; @@ -143507,19 +143520,6 @@ bo:16397 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00832+K00838+K05821"@en ; tawny:name "16397"@en . - - a owl:NamedIndividual , owl:Class ; - rdfs:comment "Any process that modulates the frequency, rate or extent of DNA repair."@en ; - rdfs:label "regulation of DNA repair"@en , "GO:0006282"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006282"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:regulatedBy . - bo:15831 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "E3.4.-.-"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -143864,15 +143864,15 @@ bo:21829 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "ADP-glucose pyrophosphorylase"@en , "ATP:alpha-glucose-1-phosphate adenylyl transferase"@en , "ATP:alpha-D-glucose-1-phosphate adenylyltransferase"@en , "ADPG pyrophosphorylase"@en , "ADP:alpha-D-glucose-1-phosphate adenylyltransferase"@en , "GO:0008878"@en , "ADP-glucose diphosphorylase"@en , "ADGase"@en , "ADP glucose pyrophosphorylase"@en , "adenosine diphosphoglucose pyrophosphorylase"@en , "ADP-glucose synthetase"@en , "adenosine diphosphate glucose pyrophosphorylase"@en , "glucose-1-phosphate adenylyltransferase"@en , "ADP-glucose synthase"@en , "glucose 1-phosphate adenylyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.27"^^xsd:string ; + owl:hasValue "GLUC1PADENYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008878"^^xsd:string ; + owl:hasValue "2.7.7.27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUC1PADENYLTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0008878"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -143917,7 +143917,7 @@ bo:17490 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "GO:0008966"@en , "alpha-D-glucosamine 1 6-phosphomutase"@en , "D-glucosamine 1 6-phosphomutase"@en , "phosphoglucosamine mutase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.2.10-RXN"^^xsd:string ; + owl:hasValue "5.4.2.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -143925,7 +143925,7 @@ bo:17490 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.2.10"^^xsd:string ; + owl:hasValue "5.4.2.10-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -144016,11 +144016,11 @@ bo:15706 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "AVTA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009042"^^xsd:string ; + owl:hasValue "COG0436"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0436"^^xsd:string ; + owl:hasValue "0009042"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -144028,16 +144028,6 @@ bo:15706 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00835"@en ; tawny:name "15706"@en . -bo:16448 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "clorobiocin biosynthesis protein CloN6"@en ; - rdfs:label "CLON6"@en ; - sybio:accession "Q8GHB6"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16449 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12722"@en ; - tawny:name "16448"@en . - bo:4795 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "glpFK_terminator2"@en ; sybio:NA "CGGAGACCACAGCAGCTCTTTACGGCAAATGTTTATGCACCCGTAAAGCGGTTTGTTGTGGTTTTTTTATTCTCTTCTTCTCTATCATGCTTTTTAATCGTGA"^^xsd:string ; @@ -144050,6 +144040,16 @@ bo:4795 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4793 ; tawny:name "4795"@en . +bo:16448 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "clorobiocin biosynthesis protein CloN6"@en ; + rdfs:label "CLON6"@en ; + sybio:accession "Q8GHB6"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16449 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12722"@en ; + tawny:name "16448"@en . + bo:4883 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "appDFABC_terminator"@en ; sybio:NA "AAAAAGCAGGTCTCCTTTAGTCAGAAAATATACAAAGAGATCTGCTTTTTATGATTCTTA"^^xsd:string ; @@ -144062,16 +144062,6 @@ bo:4883 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4882 ; tawny:name "4883"@en . -bo:16536 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "p-methyltransferase"@en ; - rdfs:label "PHPK"@en ; - sybio:accession "Q5IW50"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16535 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12914"@en ; - tawny:name "16536"@en . - a owl:Class ; rdfs:comment "The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.;"@en ; @@ -144084,6 +144074,16 @@ bo:16536 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16536 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "p-methyltransferase"@en ; + rdfs:label "PHPK"@en ; + sybio:accession "Q5IW50"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16535 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12914"@en ; + tawny:name "16536"@en . + bo:28119 a owl:NamedIndividual , sybio:RBS ; rdfs:label "prkA_RBS"@en ; sybio:NA "ACATGATAGAGGAGGTCCTT"^^xsd:string ; @@ -144094,6 +144094,18 @@ bo:28119 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31342 ; tawny:name "28119"@en . +bo:4971 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "ykvUV_terminator"@en ; + sybio:NA "GAATAGCTGAGAGCATAGACTCTCAGCTTTTTTCATATAGAG"^^xsd:string ; + sybio:annotatedSequence "GAATA{left}GCTGAGAG{/left}CATAGA{right}CTCTCAGC{/right}TTTTTTCATATAGAG"@en ; + sybio:begin "1451130"@en ; + sybio:deltaGo "-14.3"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1451171"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4970 ; + tawny:name "4971"@en . + a owl:Class ; rdfs:comment "The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule."@en ; @@ -144111,11 +144123,11 @@ bo:16624 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "PH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q945N9"^^xsd:string ; + owl:hasValue "Q945I4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q945G5"^^xsd:string ; + owl:hasValue "0050224"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -144127,11 +144139,11 @@ bo:16624 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050224"^^xsd:string ; + owl:hasValue "Q945N9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q945I4"^^xsd:string ; + owl:hasValue "Q945G5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -144139,18 +144151,6 @@ bo:16624 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13032"@en ; tawny:name "16624"@en . -bo:4971 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "ykvUV_terminator"@en ; - sybio:NA "GAATAGCTGAGAGCATAGACTCTCAGCTTTTTTCATATAGAG"^^xsd:string ; - sybio:annotatedSequence "GAATA{left}GCTGAGAG{/left}CATAGA{right}CTCTCAGC{/right}TTTTTTCATATAGAG"@en ; - sybio:begin "1451130"@en ; - sybio:deltaGo "-14.3"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1451171"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4970 ; - tawny:name "4971"@en . - bo:28207 a owl:NamedIndividual , sybio:RBS ; rdfs:label "yqzG_RBS"@en ; sybio:NA "AAAGGGTGACAGC"^^xsd:string ; @@ -144321,18 +144321,6 @@ bo:17189 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08726"@en ; tawny:name "17189"@en . -bo:20113 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from gene annotation"@en ; - rdfs:label "3.6.1.27"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.27"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "20113"@en . - bo:10898 a owl:NamedIndividual , bo:559 , sybio:Protein ; rdfs:comment "HTH-type transcriptional regulator lrpC"@en , "BSU04250;transcriptional regulator (Lrp/AsnC family);"@en ; rdfs:label "LrpC"@en , "BSU04250"@en , "YdaI"@en , "lrpC"@en ; @@ -144353,6 +144341,18 @@ bo:10898 a owl:NamedIndividual , bo:559 , sybio:Protein ; tawny:name "10898"@en ; owl:sameAs bo:6666 . +bo:20113 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from gene annotation"@en ; + rdfs:label "3.6.1.27"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.6.1.27"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "20113"@en . + bo:17277 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "sialidase-2/3/4 [EC:3.2.1.18]"@en ; rdfs:label "NEU2_3_4"@en ; @@ -144363,6 +144363,25 @@ bo:17277 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357"@en ; tawny:name "17277"@en . +bo:10986 a bo:524 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Uncharacterized ABC transporter permease yvrN"@en , "putative ABC transporter (ATP-binding protein);BSU33260"@en ; + rdfs:label "YvrN"@en , "yvrN"@en , "YvrM"@en , "BSU33260"@en , "YziB"@en ; + sybio:AA "MLEHIRISFQSIFSHKLRSILTMLGVIIGIAAIIAIVSMLKGQSEQLKQSMIGMGNNAINVVYQPSGGEEESGGPQVSYASAPPVAEETVKAIKSDPMVKGLSLYYLSEGASVFHLTNVSYPQVYGVDDDYFDMFPIRITEGRKLTENDLNSTHQVVMINEAVRDELFPDGEALHKSIEMNGVPFKVVGVFKEKNQQESMFEGDYANPVLYVPKKVWPLIEGFDAPTQIAVQADSSEHIQEAGVMAADLLNQGLSEAELEKAEYSVMDLQEIAQEVESFNQSFALLLGGIASISLLVGGIGVMNIMLVSVTERTREIGIKKALGAKRRVILFQFLTEAVVLTSIGGILGVLAGFGIAKLLTVIFPMPFIVSIPAVVGALIFSMAVGIIFGLLPSIKASKLQPVDALRYE"@en ; + sybio:accession "P46324"^^xsd:string , "BSU33260"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31660 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:9782 , bo:26633 , bo:9238 , bo:11372 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "44341.7"^^xsd:string ; + sybio:pI "4.923744"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:relatedTo bo:26739 , bo:10987 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10986"@en . + bo:388 a owl:Class ; rdfs:label "COG1530"@en ; rdfs:subClassOf bo:194 , sybio:COG ; @@ -144385,25 +144404,6 @@ bo:20201 a owl:NamedIndividual , sybio:Enzyme ; tawny:name "20201"@en ; owl:sameAs bo:26768 . -bo:10986 a bo:524 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Uncharacterized ABC transporter permease yvrN"@en , "putative ABC transporter (ATP-binding protein);BSU33260"@en ; - rdfs:label "YvrN"@en , "yvrN"@en , "YvrM"@en , "BSU33260"@en , "YziB"@en ; - sybio:AA "MLEHIRISFQSIFSHKLRSILTMLGVIIGIAAIIAIVSMLKGQSEQLKQSMIGMGNNAINVVYQPSGGEEESGGPQVSYASAPPVAEETVKAIKSDPMVKGLSLYYLSEGASVFHLTNVSYPQVYGVDDDYFDMFPIRITEGRKLTENDLNSTHQVVMINEAVRDELFPDGEALHKSIEMNGVPFKVVGVFKEKNQQESMFEGDYANPVLYVPKKVWPLIEGFDAPTQIAVQADSSEHIQEAGVMAADLLNQGLSEAELEKAEYSVMDLQEIAQEVESFNQSFALLLGGIASISLLVGGIGVMNIMLVSVTERTREIGIKKALGAKRRVILFQFLTEAVVLTSIGGILGVLAGFGIAKLLTVIFPMPFIVSIPAVVGALIFSMAVGIIFGLLPSIKASKLQPVDALRYE"@en ; - sybio:accession "P46324"^^xsd:string , "BSU33260"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31660 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:9782 , bo:26633 , bo:9238 , bo:11372 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "44341.7"^^xsd:string ; - sybio:pI "4.923744"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:relatedTo bo:26739 , bo:10987 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10986"@en . - bo:17365 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "oxaloacetate decarboxylase, gamma subunit [EC:4.1.1.3]"@en ; rdfs:label "E4.1.1.3G"@en , "OADG"@en ; @@ -144452,26 +144452,6 @@ bo:17453 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11946"@en ; tawny:name "17453"@en . - - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; - rdfs:comment "Catalysis of the reaction: glycerone phosphate = methylglyoxal + phosphate."@en ; - rdfs:label "GO:0008929"@en , "methylglyoxal synthetase"@en , "methylglyoxal synthase"@en , "glycerone-phosphate phospho-lyase"@en ; - rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "METHGLYSYN-RXN"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.3.3"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008929"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:29036 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU10710;;"@en ; rdfs:label "yisG"@en , "gerPB"@en , "BSU10710"@en ; @@ -144498,6 +144478,26 @@ bo:29036 a sybio:CDS , owl:NamedIndividual ; "11.0"@en ; tawny:name "29036"@en . + + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; + rdfs:comment "Catalysis of the reaction: glycerone phosphate = methylglyoxal + phosphate."@en ; + rdfs:label "GO:0008929"@en , "methylglyoxal synthetase"@en , "methylglyoxal synthase"@en , "glycerone-phosphate phospho-lyase"@en ; + rdfs:subClassOf sybio:MolecularFunction , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "METHGLYSYN-RXN"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0008929"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "4.2.3.3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:564 a owl:Class ; rdfs:label "COG1215"@en ; rdfs:subClassOf bo:189 , sybio:COG ; @@ -144509,16 +144509,6 @@ bo:564 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "564"@en . -bo:17541 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]"@en ; - rdfs:label "TTDB"@en ; - sybio:accession "0008730"^^xsd:string , "COG1838"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17540 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03779+K03780"@en ; - tawny:name "17541"@en . - bo:23399 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "UDP-N-acetyl-D-glucosamine"@en , "cpd:C00043 => cpd:C00043"@en , "chitin4-beta-N-acetylglucosaminyl-transferase"@en , "C00043 + C00461 <=> C00015 + C00461"@en ; @@ -144530,6 +144520,16 @@ bo:23399 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11652 ; tawny:name "23399"@en . +bo:17541 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]"@en ; + rdfs:label "TTDB"@en ; + sybio:accession "0008730"^^xsd:string , "COG1838"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17540 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03779+K03780"@en ; + tawny:name "17541"@en . + bo:29124 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU01940"@en ; sybio:accession "BSU01940"^^xsd:string ; @@ -144719,15 +144719,15 @@ bo:4934 a sybio:Operon , owl:NamedIndividual ; rdfs:label "arabinogalactan endo-1,4-beta-galactosidase"@en , "endo-1 4-beta-galactanase"@en , "arabinogalactan 4-beta-D-galactanohydrolase"@en , "arabinogalactanase"@en , "galactanase"@en , "GO:0031218"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.89-RXN"^^xsd:string ; + owl:hasValue "3.2.1.89"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.89"^^xsd:string ; + owl:hasValue "GO:0031218"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031218"^^xsd:string ; + owl:hasValue "3.2.1.89-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -144950,11 +144950,11 @@ bo:10949 a owl:NamedIndividual , sybio:Protein ; rdfs:label "glycosidase"@en , "GO:0016798"@en , "hydrolase activity, acting on glycosyl bonds"@en , "N-glycosylase"@en , "glycosylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016798"^^xsd:string ; + owl:hasValue "3.2.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.-.-"^^xsd:string ; + owl:hasValue "GO:0016798"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -144998,11 +144998,11 @@ bo:17416 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E1.2.1.10A"@en , "ADHE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0008774"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008774"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -145200,11 +145200,11 @@ bo:18157 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "COBG"@en , "E1.14.13.83"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0155"^^xsd:string ; + owl:hasValue "0043818"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043818"^^xsd:string ; + owl:hasValue "COG0155"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -145453,14 +145453,6 @@ bo:5638 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ytmQ"@en ; tawny:name "5638"@en . -bo:5726 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "pgi-yugMN"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28977 , bo:31609 , bo:31610 ; - sybio:operonGenes "pgi,yugM,yugN"@en ; - tawny:name "5726"@en . - a owl:Class ; rdfs:comment "Cell motility due to movement of cilia or flagella."@en ; @@ -145473,6 +145465,14 @@ bo:5726 a sybio:Operon , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:5726 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "pgi-yugMN"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28977 , bo:31609 , bo:31610 ; + sybio:operonGenes "pgi,yugM,yugN"@en ; + tawny:name "5726"@en . + bo:5814 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yvrPON_terminator"@en ; sybio:NA "CGCTATGAATAAAAAGAACGCATCCAATTGGAATGCGTTCTTTTTTTAGCTGGGA"^^xsd:string ; @@ -145588,11 +145588,11 @@ bo:19162 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "H6H"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P24397"^^xsd:string ; + owl:hasValue "0047998"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047998"^^xsd:string ; + owl:hasValue "P24397"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -145683,6 +145683,18 @@ bo:25284 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25284"@en . +bo:25372 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.37"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.37"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25372"@en . + bo:10062 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein yddC"@en , "conserved hypothetical protein;BSU04920"@en ; rdfs:label "yddC"@en , "YddC"@en , "BSU04920"@en ; @@ -145701,18 +145713,6 @@ bo:10062 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10062"@en . -bo:25372 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.37"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.37"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25372"@en . - bo:6379 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ybgG_terminator"@en ; sybio:NA "CGCCGGAGTCTCGTGTCACTTTCTGACATGAGATTTTTTATTAGGAAG"^^xsd:string ; @@ -145725,6 +145725,17 @@ bo:6379 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:6378 ; tawny:name "6379"@en . +bo:25460 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "brassinosteroid C22alpha-hydroxylase"@en , "cpd:C15790 <=> cpd:C15790"@en , "C15789 + C00007 + C00005 <=> C15790 + C00006 + C00001"@en , "6-Oxocampestanol,NADPH"@en ; + sybio:accession "RN:R07430"^^xsd:string ; + sybio:catalyzedBy bo:18544 ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25460"@en . + bo:10150 a owl:NamedIndividual , sybio:Protein , bo:1237 ; rdfs:comment "Uncharacterized protein yneP"@en , "BSU18040;putative acyl-CoA thioesterase"@en ; rdfs:label "YneP"@en , "BSU18040"@en , "yneP"@en ; @@ -145741,17 +145752,6 @@ bo:10150 a owl:NamedIndividual , sybio:Protein , bo:1237 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10150"@en . -bo:25460 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "brassinosteroid C22alpha-hydroxylase"@en , "cpd:C15790 <=> cpd:C15790"@en , "C15789 + C00007 + C00005 <=> C15790 + C00006 + C00001"@en , "6-Oxocampestanol,NADPH"@en ; - sybio:accession "RN:R07430"^^xsd:string ; - sybio:catalyzedBy bo:18544 ; - sybio:catalyzingClass bo:21056 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25460"@en . - bo:6467 a sybio:Operon , owl:NamedIndividual ; rdfs:label "gerPABCDEF"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -145801,11 +145801,11 @@ bo:18208 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E2.5.1.29"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004311"^^xsd:string ; + owl:hasValue "COG0142"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0142"^^xsd:string ; + owl:hasValue "0004311"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -146944,11 +146944,11 @@ bo:13538 a sybio:Compound , owl:NamedIndividual ; rdfs:label "HCS"@en , "biotin holoenzyme synthetase"@en , "GO:0004077"@en , "biotin-acetyl-CoA carboxylase synthetase"@en , "acetyl CoA holocarboxylase synthetase"@en , "biotin:apocarboxylase ligase"@en , "biotin--[acetyl-CoA carboxylase] synthetase"@en , "biotin--protein ligase"@en , "biotin-[acetyl-CoA-carboxylase] ligase"@en , "biotin:apo-acetyl-CoA:carbon-dioxide ligase ligase"@en , "biotin-acetyl coenzyme A carboxylase synthetase"@en , "acetyl coenzyme A holocarboxylase synthetase"@en , "acetyl-CoA carboxylase biotin holoenzyme synthetase"@en , "biotin-acetyl-CoA-carboxylase ligase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BIOTINLIG-RXN"^^xsd:string ; + owl:hasValue "6.3.4.15"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.15"^^xsd:string ; + owl:hasValue "BIOTINLIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -147631,7 +147631,7 @@ bo:15460 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AGT1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004760"^^xsd:string ; + owl:hasValue "0008453"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -147639,7 +147639,7 @@ bo:15460 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008453"^^xsd:string ; + owl:hasValue "0004760"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -148476,7 +148476,7 @@ bo:281 a owl:Class ; rdfs:label "GO:0008734"@en , "L-aspartate oxidase"@en , "L-aspartate:oxygen oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.3.16"^^xsd:string ; + owl:hasValue "GO:0008734"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -148488,7 +148488,7 @@ bo:281 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008734"^^xsd:string ; + owl:hasValue "1.4.3.16"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -148519,11 +148519,11 @@ bo:18937 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "SIAT7A"@en , "ST6GALNAC I"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0001665"^^xsd:string ; + owl:hasValue "GT29"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT29"^^xsd:string ; + owl:hasValue "0001665"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -148607,6 +148607,18 @@ bo:4563 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ydfR"@en ; tawny:name "4563"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle."@en ; + rdfs:label "citrate metabolism"@en , "GO:0006101"@en , "citrate metabolic process"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006101"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16216 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "phenol 2-monooxygenase [EC:1.14.13.7]"@en ; rdfs:label "E1.14.13.7"@en ; @@ -148620,18 +148632,6 @@ bo:16216 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03380"@en ; tawny:name "16216"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle."@en ; - rdfs:label "citrate metabolism"@en , "GO:0006101"@en , "citrate metabolic process"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006101"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - a owl:Class ; rdfs:comment "The directed movement of polysaccharides into, out of, within or between cells by means of some external agent such as a transporter or pore. A polysaccharide is a polymer of more than about 10 monosaccharide residues joined by glycosidic linkages."@en ; @@ -148684,11 +148684,11 @@ bo:22338 a sybio:EC , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.30"^^xsd:string ; + owl:hasValue "METHYLISOCITRATE-LYASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "METHYLISOCITRATE-LYASE-RXN"^^xsd:string ; + owl:hasValue "4.1.3.30"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -148808,6 +148808,17 @@ bo:19942 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "19942"@en ; owl:sameAs bo:26538 . +bo:25888 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "Glycocholate amidohydrolase"@en , "cpd:C01921 <=> cpd:C01921"@en , "C01921 + C00001 <=> C00695 + C00037"@en ; + sybio:accession "RN:R05835"^^xsd:string ; + sybio:catalyzedBy bo:19120 ; + sybio:catalyzingClass bo:25542 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25888"@en . + bo:10578 a bo:1190 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "putative hydrolase involved in subtilosin production;BSU37410"@en , "Antilisterial bacteriocin subtilosin biosynthesis protein albE"@en ; rdfs:label "AlbE"@en , "albE"@en , "BSU37410"@en , "YwhO"@en ; @@ -148826,16 +148837,17 @@ bo:10578 a bo:1190 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "10578"@en . -bo:25888 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "Glycocholate amidohydrolase"@en , "cpd:C01921 <=> cpd:C01921"@en , "C01921 + C00001 <=> C00695 + C00037"@en ; - sybio:accession "RN:R05835"^^xsd:string ; - sybio:catalyzedBy bo:19120 ; - sybio:catalyzingClass bo:25542 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25888"@en . +bo:25976 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "4.2.3.22"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "4.2.3.22"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25976"@en . bo:10666 a bo:1594 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Putative integral membrane protein yxzK"@en , "putative integral inner membrane protein involved in export murein hydrolases;BSU40021"@en ; @@ -148854,18 +148866,6 @@ bo:10666 a bo:1594 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10666"@en . -bo:25976 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "4.2.3.22"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.3.22"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25976"@en . - bo:17045 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [EC:3.1.3.67]"@en ; rdfs:label "E3.1.3.67"@en , "PTEN"@en ; @@ -149217,26 +149217,6 @@ bo:11583 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "11583"@en . -bo:26981 a owl:NamedIndividual , sybio:Protein , bo:855 , bo:729 ; - rdfs:comment "Protoporphyrinogen oxidase;derived protein"@en , "protoporphyrinogen IX and coproporphyrinogen III oxidase;BSU10140"@en ; - rdfs:label "HemG"@en , "hemY"@en , "HemY"@en , "BSU10140"@en ; - sybio:AA "MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYLFS"@en ; - sybio:accession "P32397"^^xsd:string , "BSU10140"^^xsd:string , "936311"^^xsd:string , "16078078"^^xsd:string ; - sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32584 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "51200.775"^^xsd:string ; - sybio:pI "8.130867"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26524 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26981"@en . - bo:30471 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32880"@en ; rdfs:label "BSU32880"@en , "yusP"@en ; @@ -149262,6 +149242,26 @@ bo:30471 a owl:NamedIndividual , sybio:CDS ; "166.0"@en ; tawny:name "30471"@en . +bo:26981 a owl:NamedIndividual , sybio:Protein , bo:855 , bo:729 ; + rdfs:comment "Protoporphyrinogen oxidase;derived protein"@en , "protoporphyrinogen IX and coproporphyrinogen III oxidase;BSU10140"@en ; + rdfs:label "HemG"@en , "hemY"@en , "HemY"@en , "BSU10140"@en ; + sybio:AA "MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYLFS"@en ; + sybio:accession "P32397"^^xsd:string , "BSU10140"^^xsd:string , "936311"^^xsd:string , "16078078"^^xsd:string ; + sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32584 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "51200.775"^^xsd:string ; + sybio:pI "8.130867"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26524 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26981"@en . + bo:11671 a owl:NamedIndividual , sybio:Pathway , owl:Class ; rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00600.png"@en ; rdfs:label "Sphingolipid metabolism"@en ; @@ -149315,11 +149315,11 @@ bo:24084 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "UDP-GlcNAc pyrophosphorylase"@en , "acetylglucosamine 1-phosphate uridylyltransferase"@en , "uridine diphosphoacetylglucosamine phosphorylase"@en , "UTP:N-acetyl-alpha-D-glucosamine-1-phosphate uridylyltransferase"@en , "UDP-acetylglucosamine pyrophosphorylase"@en , "GlmU uridylyltransferase"@en , "UDP-N-acetylglucosamine pyrophosphorylase"@en , "UTP:2-acetamido-2-deoxy-alpha-D-glucose-1-phosphate uridylyltransferase"@en , "uridine diphosphate-N-acetylglucosamine pyrophosphorylase"@en , "GO:0003977"@en , "uridine diphosphoacetylglucosamine pyrophosphorylase"@en , "N-acetylglucosamine-1-phosphate uridyltransferase"@en , "UDP-N-acetylglucosamine diphosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003977"^^xsd:string ; + owl:hasValue "NAG1P-URIDYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAG1P-URIDYLTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0003977"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -149813,11 +149813,11 @@ bo:18013 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "FMDC"@en , "E1.2.99.5C"@en , "FWDC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018493"^^xsd:string ; + owl:hasValue "COG2218"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2218"^^xsd:string ; + owl:hasValue "0018493"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -150799,11 +150799,11 @@ bo:16894 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "INO1"@en , "E5.5.1.4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1260"^^xsd:string ; + owl:hasValue "0004512"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004512"^^xsd:string ; + owl:hasValue "COG1260"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -151053,11 +151053,11 @@ bo:9836 a sybio:Protein , bo:565 , owl:NamedIndividual ; rdfs:label "GO:0005737"@en , "cytoplasm"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005737"^^xsd:string ; + owl:hasValue "Cytoplasm"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cytoplasm"^^xsd:string ; + owl:hasValue "GO:0005737"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -151372,11 +151372,11 @@ bo:16945 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.1.1.202"@en , "DHAT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047516"^^xsd:string ; + owl:hasValue "COG1454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1454"^^xsd:string ; + owl:hasValue "0047516"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -152470,11 +152470,11 @@ bo:18742 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "B3GALNT1"@en , "B3GALT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047273"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "0047273"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -152765,6 +152765,17 @@ bo:16020 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05603"@en ; tawny:name "16020"@en . +bo:25693 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "C05454 + C00007 + C00005 <=> C05446 + C00006 + C00001"@en , "oxygenoxidoreductase (26-hydroxylating)"@en , "5beta-Cholestane-3alpha,7alpha,12alpha-triol,NADPH"@en , "cpd:C05454 <=> cpd:C05454"@en ; + sybio:accession "RN:R04807"^^xsd:string ; + sybio:catalyzedBy bo:19084 ; + sybio:catalyzingClass bo:25694 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25693"@en . + bo:10383 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Sigma-w pathway protein ysdB"@en , "conserved hypothetical protein;BSU28830"@en ; rdfs:label "YsdB"@en , "ysdB"@en , "BSU28830"@en ; @@ -152781,16 +152792,15 @@ bo:10383 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10383"@en . -bo:25693 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "C05454 + C00007 + C00005 <=> C05446 + C00006 + C00001"@en , "oxygenoxidoreductase (26-hydroxylating)"@en , "5beta-Cholestane-3alpha,7alpha,12alpha-triol,NADPH"@en , "cpd:C05454 <=> cpd:C05454"@en ; - sybio:accession "RN:R04807"^^xsd:string ; - sybio:catalyzedBy bo:19084 ; - sybio:catalyzingClass bo:25694 ; +bo:25781 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "caffeic acid O-methyltransferase - reversible"@en ; + rdfs:label "3,4-dihydroxy-trans-cinnamate3-O-methyltransferase"@en , "C12204 + C00019 <=> C05610 + C00021"@en , "cpd:C12204 <=> cpd:C12204"@en , "S-adenosyl-L-methionine"@en ; + sybio:accession "RN:R06576"^^xsd:string ; + sybio:catalyzingClass bo:25361 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25693"@en . + tawny:name "25781"@en . bo:10471 a owl:NamedIndividual , sybio:Protein , bo:1715 ; rdfs:comment "Extracellular ribonuclease"@en , "extracellular ribonuclease;BSU32540"@en ; @@ -152811,16 +152821,6 @@ bo:10471 a owl:NamedIndividual , sybio:Protein , bo:1715 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10471"@en . -bo:25781 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "caffeic acid O-methyltransferase - reversible"@en ; - rdfs:label "3,4-dihydroxy-trans-cinnamate3-O-methyltransferase"@en , "C12204 + C00019 <=> C05610 + C00021"@en , "cpd:C12204 <=> cpd:C12204"@en , "S-adenosyl-L-methionine"@en ; - sybio:accession "RN:R06576"^^xsd:string ; - sybio:catalyzingClass bo:25361 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25781"@en . - bo:6788 a sybio:Protein , bo:1813 , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU36180"@en ; rdfs:label "YwqK"@en , "BSU36180"@en ; @@ -153171,23 +153171,6 @@ bo:19622 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19622"@en . -bo:10258 a sybio:Protein , owl:NamedIndividual ; - rdfs:comment "small acid-soluble spore protein;BSU22000"@en , "Small, acid-soluble spore protein L;"@en ; - rdfs:label "SspL"@en , "BSU22000"@en , "sspL"@en ; - sybio:AA "MKKKDKGRLTGGVTPQGDLEGNTHNDPKTELEERAKKSNTKR"@en ; - sybio:accession "BSU22000"^^xsd:string , "Q7WY66"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:28701 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.8 : Sporulation"^^xsd:string ; - sybio:localisation "7 : Spore"^^xsd:string ; - sybio:molecularWeight "4694.055"^^xsd:string ; - sybio:pI "9.775337"^^xsd:string ; - sybio:productType "cp : cell process"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10258"@en . - bo:19710 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "xylA"@en ; @@ -153210,6 +153193,23 @@ bo:25568 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 ; tawny:name "25568"@en . +bo:10258 a sybio:Protein , owl:NamedIndividual ; + rdfs:comment "small acid-soluble spore protein;BSU22000"@en , "Small, acid-soluble spore protein L;"@en ; + rdfs:label "SspL"@en , "BSU22000"@en , "sspL"@en ; + sybio:AA "MKKKDKGRLTGGVTPQGDLEGNTHNDPKTELEERAKKSNTKR"@en ; + sybio:accession "BSU22000"^^xsd:string , "Q7WY66"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:28701 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.8 : Sporulation"^^xsd:string ; + sybio:localisation "7 : Spore"^^xsd:string ; + sybio:molecularWeight "4694.055"^^xsd:string ; + sybio:pI "9.775337"^^xsd:string ; + sybio:productType "cp : cell process"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10258"@en . + bo:25656 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "Siat8e - reversible"@en ; rdfs:label "gl:G00111 <=> gl:G00111"@en , "G10616 + G00111 <=> G10621 + G00112"@en ; @@ -153849,14 +153849,14 @@ bo:10309 a sybio:Protein , bo:1055 , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate."@en ; - rdfs:label "myo-inositol-hexaphosphate 3-phosphohydrolase"@en , "1-phytase"@en , "phytate 3-phosphatase"@en , "3-phytase"@en , "phytate 1-phosphatase"@en , "myo-inositol-hexakisphosphate 3-phosphohydrolase"@en , "phytase"@en , "GO:0016158"@en ; + rdfs:label "myo-inositol-hexaphosphate 3-phosphohydrolase"@en , "1-phytase"@en , "phytate 3-phosphatase"@en , "phytate 1-phosphatase"@en , "3-phytase"@en , "myo-inositol-hexakisphosphate 3-phosphohydrolase"@en , "phytase"@en , "GO:0016158"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.8"^^xsd:string ; + owl:hasValue "RXN0-1001"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-1001"^^xsd:string ; + owl:hasValue "3.1.3.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -154053,11 +154053,11 @@ bo:32835 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004574"^^xsd:string ; + owl:hasValue "3.2.1.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.10"^^xsd:string ; + owl:hasValue "GO:0004574"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -154092,18 +154092,18 @@ bo:32923 a sybio:CDS , owl:NamedIndividual ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate."@en ; - rdfs:label "D-ribulose phosphate-3-epimerase"@en , "pentose-5-phosphate 3-epimerase"@en , "D-ribulose 5-phosphate epimerase"@en , "phosphoketopentose 3-epimerase"@en , "ribulose 5-phosphate 3-epimerase"@en , "ribulose-phosphate 3-epimerase"@en , "GO:0004750"@en , "erythrose-4-phosphate isomerase"@en , "phosphoketopentose epimerase"@en , "D-ribulose-5-phosphate 3-epimerase"@en , "D-ribulose-5-phosphate epimerase"@en , "D-xylulose-5-phosphate 3-epimerase"@en , "xylulose phosphate 3-epimerase"@en , "phosphoribulose epimerase"@en , "D-ribulose-5-P 3-epimerase"@en , "erythrose-4-phosphate epimerase"@en ; + rdfs:label "erythrose-4-phosphate epimerase"@en , "D-ribulose phosphate-3-epimerase"@en , "pentose-5-phosphate 3-epimerase"@en , "D-ribulose 5-phosphate epimerase"@en , "phosphoketopentose 3-epimerase"@en , "ribulose 5-phosphate 3-epimerase"@en , "ribulose-phosphate 3-epimerase"@en , "GO:0004750"@en , "erythrose-4-phosphate isomerase"@en , "phosphoketopentose epimerase"@en , "D-ribulose-5-phosphate 3-epimerase"@en , "D-ribulose-5-phosphate epimerase"@en , "D-xylulose-5-phosphate 3-epimerase"@en , "xylulose phosphate 3-epimerase"@en , "D-ribulose-5-P 3-epimerase"@en , "phosphoribulose epimerase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004750"^^xsd:string ; + owl:hasValue "5.1.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBULP3EPIM-RXN"^^xsd:string ; + owl:hasValue "GO:0004750"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.1"^^xsd:string ; + owl:hasValue "RIBULP3EPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -154629,11 +154629,11 @@ bo:2999 a sybio:SigAPromoter , sybio:Promoter , sybio:Con rdfs:label "GO:0004713"@en , "protein-tyrosine kinase"@en , "protein tyrosine kinase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.10.1-RXN"^^xsd:string ; + owl:hasValue "GO:0004713"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11065 \"protein tyrosine kinase activity\""^^xsd:string ; + owl:hasValue "2.7.10.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -154641,11 +154641,11 @@ bo:2999 a sybio:SigAPromoter , sybio:Promoter , sybio:Con owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004713"^^xsd:string ; + owl:hasValue "11065 \"protein tyrosine kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.10.2-RXN"^^xsd:string ; + owl:hasValue "2.7.10.1-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -154661,11 +154661,11 @@ bo:2999 a sybio:SigAPromoter , sybio:Promoter , sybio:Con owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRANSALDOL-RXN"^^xsd:string ; + owl:hasValue "GO:0004801"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004801"^^xsd:string ; + owl:hasValue "TRANSALDOL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -154900,11 +154900,11 @@ bo:9641 a owl:NamedIndividual , sybio:Protein , bo:211 , rdfs:label "outer membrane-bounded periplasmic space"@en , "GO:0030288"@en , "outer membrane-enclosed periplasmic space"@en , "outer membrane bounded periplasmic space"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030288"^^xsd:string ; + owl:hasValue "Periplasmic_space"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Periplasmic_space"^^xsd:string ; + owl:hasValue "GO:0030288"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -155404,11 +155404,11 @@ bo:17491 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "phosphoglycollate phosphatase"@en , "phosphoglycolate hydrolase"@en , "2-phosphoglycolate phosphatase"@en , "P-glycolate phosphatase"@en , "GO:0008967"@en , "2-phosphoglycolate phosphohydrolase"@en , "phosphoglycolate phosphatase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.18"^^xsd:string ; + owl:hasValue "GO:0008967"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008967"^^xsd:string ; + owl:hasValue "3.1.3.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -155444,17 +155444,6 @@ bo:1334 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1334"@en . -bo:1422 a owl:Class ; - rdfs:label "COG2079"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2079"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1422"@en . - bo:29162 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00360"@en ; rdfs:label "yabC"@en , "BSU00360"@en ; @@ -155480,6 +155469,17 @@ bo:29162 a sybio:CDS , owl:NamedIndividual ; "239.0"@en ; tawny:name "29162"@en . +bo:1422 a owl:Class ; + rdfs:label "COG2079"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG2079"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1422"@en . + bo:690 a owl:Class ; rdfs:label "COG1001"@en ; rdfs:subClassOf bo:185 , sybio:COG ; @@ -155540,11 +155540,11 @@ bo:15619 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E2.3.1.31"@en , "METX"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2021"^^xsd:string ; + owl:hasValue "0004414"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004414"^^xsd:string ; + owl:hasValue "COG2021"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -155588,6 +155588,18 @@ bo:4884 a owl:NamedIndividual , sybio:Operon ; sybio:operonGenes "oppA,oppB,oppC,oppD,oppF"@en ; tawny:name "4884"@en . + + a owl:Class ; + rdfs:comment "The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; + rdfs:label "aspartyl-tRNA aminoacylation"@en , "GO:0006422"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006422"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16537 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "p-methyltransferase"@en ; rdfs:label "PHPK"@en ; @@ -155601,17 +155613,13 @@ bo:16537 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12914"@en ; tawny:name "16537"@en . - - a owl:Class ; - rdfs:comment "The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; - rdfs:label "aspartyl-tRNA aminoacylation"@en , "GO:0006422"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006422"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4972 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ykvW"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32317 ; + sybio:operonGenes "ykvW"@en ; + tawny:name "4972"@en . bo:16625 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "aldoxime dehydratase [EC:4.99.1.5]"@en ; @@ -155623,14 +155631,6 @@ bo:16625 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13028"@en ; tawny:name "16625"@en . -bo:4972 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ykvW"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32317 ; - sybio:operonGenes "ykvW"@en ; - tawny:name "4972"@en . - bo:28208 a sybio:RBS , owl:NamedIndividual ; rdfs:label "mgsR_RBS"@en ; sybio:NA "AACTGAGGAGGAAAAAACGA"^^xsd:string ; @@ -155832,17 +155832,6 @@ bo:17278 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01186+K12357"@en ; tawny:name "17278"@en . -bo:389 a owl:Class ; - rdfs:label "COG4856"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4856"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "389"@en . - bo:20202 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "3.5.1.25"@en ; @@ -155855,6 +155844,17 @@ bo:20202 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "20202"@en . +bo:389 a owl:Class ; + rdfs:label "COG4856"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG4856"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "389"@en . + bo:10987 a owl:NamedIndividual , bo:1030 , bo:180 , sybio:Protein ; rdfs:comment "putative ABC transporter component;BSU33280"@en , "Putative efflux system protein yvrP"@en ; rdfs:label "YvrP"@en , "yvrP"@en , "BSU33280"@en ; @@ -155995,16 +155995,6 @@ bo:653 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "653"@en . -bo:17630 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "benzylsuccinate CoA-transferase BbsE subunit [EC:2.8.3.15]"@en ; - rdfs:label "BBSE"@en , "E2.8.3.15E"@en ; - sybio:accession "0018728"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17631 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; - tawny:name "17630"@en . - bo:23488 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.3.1.51"@en ; @@ -156017,6 +156007,16 @@ bo:23488 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "23488"@en . +bo:17630 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "benzylsuccinate CoA-transferase BbsE subunit [EC:2.8.3.15]"@en ; + rdfs:label "BBSE"@en , "E2.8.3.15E"@en ; + sybio:accession "0018728"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17631 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; + tawny:name "17630"@en . + bo:29213 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU01440"@en ; rdfs:label "BSU01440"@en , "rplQ"@en ; @@ -156202,11 +156202,11 @@ bo:18195 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "GO:0008080"@en , "N-acetyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.-"^^xsd:string ; + owl:hasValue "GO:0008080"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008080"^^xsd:string ; + owl:hasValue "2.3.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -156227,6 +156227,22 @@ bo:2038 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "2038"@en . +bo:2126 a bo:1249 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "BSU18280;putative exported protein"@en ; + rdfs:label "YngK"@en , "YotA"@en , "BSU18280"@en ; + sybio:AA "MKVCQKSIVRFLVSLIIGTFVISVPFMANAQSDRELRAVWIASVLNIDWPSKKGLSVKEQKQEYIKLLDDVQKMGMNAVIVQIKPTADAFYPSAYGPWSEYLTGVQGKDPGYDPLAFMIEETHKRNLEFHAWFNPYRITMNHTDLNKLSEDHPARKHPDWVAAYGNQLYYHPGIPEARDFIVKGIEEVVKHYDIDAVHMDDYFYPYKIAGQEFPDQAQYEQYGKDAFSNIDDWRRDNVNQLVKQINQTIKAAKPYVKFGISPFGVWRNAADDPTGSNTKAGVRNYDDLYADTRHWIQEGDIDYIAPQIYWSIGFNAAAYDVLADWWSNEVKNRPVHLYIGQAAYKINNNFDPPWSDPEEYVRQITLNRQLELVKGSMHFSLKDLNKNPLGIKDSLSTDLYSKPALVPQMPWLDNTAPKKPKLTKVTEDKNGNLLQIKDHPSNQKTKETAYYAIYRAEGKKQRTLLATQRKTHEQQTFLDNTADPNKKYTYYVTSADRLHNESKASKRTTK"@en ; + sybio:accession "BSU18280"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:31548 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "5.2 : From other organisms"^^xsd:string ; + sybio:localisation "8 : Secreted"^^xsd:string ; + sybio:molecularWeight "58866.175"^^xsd:string ; + sybio:pI "8.180107"^^xsd:string ; + sybio:productType "ps : putative structure"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2126"@en . + bo:18283 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "nitrogenase iron protein NifH [EC:1.18.6.1]"@en ; rdfs:label "NIFH"@en ; @@ -156244,22 +156260,6 @@ bo:18283 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00531+K02586+K02588+K02591"@en ; tawny:name "18283"@en . -bo:2126 a bo:1249 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "BSU18280;putative exported protein"@en ; - rdfs:label "YngK"@en , "YotA"@en , "BSU18280"@en ; - sybio:AA "MKVCQKSIVRFLVSLIIGTFVISVPFMANAQSDRELRAVWIASVLNIDWPSKKGLSVKEQKQEYIKLLDDVQKMGMNAVIVQIKPTADAFYPSAYGPWSEYLTGVQGKDPGYDPLAFMIEETHKRNLEFHAWFNPYRITMNHTDLNKLSEDHPARKHPDWVAAYGNQLYYHPGIPEARDFIVKGIEEVVKHYDIDAVHMDDYFYPYKIAGQEFPDQAQYEQYGKDAFSNIDDWRRDNVNQLVKQINQTIKAAKPYVKFGISPFGVWRNAADDPTGSNTKAGVRNYDDLYADTRHWIQEGDIDYIAPQIYWSIGFNAAAYDVLADWWSNEVKNRPVHLYIGQAAYKINNNFDPPWSDPEEYVRQITLNRQLELVKGSMHFSLKDLNKNPLGIKDSLSTDLYSKPALVPQMPWLDNTAPKKPKLTKVTEDKNGNLLQIKDHPSNQKTKETAYYAIYRAEGKKQRTLLATQRKTHEQQTFLDNTADPNKKYTYYVTSADRLHNESKASKRTTK"@en ; - sybio:accession "BSU18280"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:31548 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "5.2 : From other organisms"^^xsd:string ; - sybio:localisation "8 : Secreted"^^xsd:string ; - sybio:molecularWeight "58866.175"^^xsd:string ; - sybio:pI "8.180107"^^xsd:string ; - sybio:productType "ps : putative structure"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2126"@en . - bo:30792 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00030"@en ; rdfs:label "BSU00030"@en , "yaaA"@en ; @@ -156297,11 +156297,11 @@ bo:30792 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-1824"^^xsd:string ; + owl:hasValue "GO:0051060"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051060"^^xsd:string ; + owl:hasValue "RXN-1824"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -156437,11 +156437,11 @@ bo:5588 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "GO:0016799"@en , "hydrolase activity, hydrolyzing N-glycosyl compounds"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016799"^^xsd:string ; + owl:hasValue "3.2.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.-"^^xsd:string ; + owl:hasValue "GO:0016799"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -156474,23 +156474,23 @@ bo:5676 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0016887"@en , "ATPase"@en , "adenosine 5'-triphosphatase"@en , "adenosine triphosphatase"@en , "adenosinetriphosphatase"@en , "complex V"@en , "(Ca2+ + Mg2+)-ATPase"@en , "ATP hydrolase"@en , "ATP phosphohydrolase"@en , "ATP monophosphatase"@en , "SV40 T-antigen"@en , "HCO3--ATPase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1401 \"ATPase activity\""^^xsd:string ; + owl:hasValue "ATP-PYROPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016887"^^xsd:string ; + owl:hasValue "ADENOSINETRIPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENOSINETRIPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004002"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004002"^^xsd:string ; + owl:hasValue "GO:0016887"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ATP-PYROPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "1401 \"ATPase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -157005,7 +157005,7 @@ bo:5815 a sybio:Operon , owl:NamedIndividual ; rdfs:label "L-amino-acid:oxygen oxidoreductase"@en , "L-amino-acid oxidase"@en , "GO:0001716"@en , "ophio-amino-acid oxidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.3.2"^^xsd:string ; + owl:hasValue "L-AMINO-ACID-OXIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -157013,7 +157013,7 @@ bo:5815 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "L-AMINO-ACID-OXIDASE-RXN"^^xsd:string ; + owl:hasValue "1.4.3.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -157623,11 +157623,11 @@ bo:19126 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "AMACR"@en , "E5.1.99.4"@en , "MCR"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008111"^^xsd:string ; + owl:hasValue "COG1804"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1804"^^xsd:string ; + owl:hasValue "0008111"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -157645,11 +157645,11 @@ bo:19126 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009011"^^xsd:string ; + owl:hasValue "GLYCOGENSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCOGENSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0009011"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -157881,11 +157881,11 @@ bo:10202 a owl:NamedIndividual , bo:631 , sybio:Protein ; rdfs:label "carbohydrate biosynthetic process"@en , "anabolic carbohydrate metabolic process"@en , "carbohydrate biosynthesis"@en , "carbohydrate formation"@en , "anabolic carbohydrate metabolism"@en , "carbohydrate synthesis"@en , "carbohydrate anabolism"@en , "GO:0016051"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016051"^^xsd:string ; + owl:hasValue "GO:0006093"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006093"^^xsd:string ; + owl:hasValue "GO:0016051"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -158617,7 +158617,7 @@ bo:13803 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GlcN6P deaminase"@en , "aminodeoxyglucosephosphate isomerase"@en , "2-amino-2-deoxy-D-glucose-6-phosphate aminohydrolase"@en , "GO:0004342"@en , "glucosaminephosphate isomerase"@en , "phosphoglucosamine isomerase"@en , "glucosamine-6-phosphate isomerase"@en , "glucosamine-6-phosphate deaminase"@en , "glucosamine phosphate deaminase"@en , "phosphoglucosaminisomerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUCOSAMINE-6-P-DEAMIN-RXN"^^xsd:string ; + owl:hasValue "GO:0004342"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -158625,7 +158625,7 @@ bo:13803 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004342"^^xsd:string ; + owl:hasValue "GLUCOSAMINE-6-P-DEAMIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -159052,19 +159052,19 @@ bo:21584 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "indophenolase"@en , "indophenol oxidase"@en , "ferrocytochrome-c:oxygen oxidoreductase"@en , "cytochrome aa3"@en , "aa3-type cytochrome c oxidase"@en , "NADH cytochrome c oxidase"@en , "complex IV"@en , "cytochrome-c oxidase"@en , "warburg's respiratory enzyme"@en , "ferrocytochrome c oxidase"@en , "cytochrome a3"@en , "caa3-type cytochrome c oxidase"@en , "GO:0004129"@en , "cytochrome oxidase"@en , "cbb3-type cytochrome c oxidase"@en , "ba3-type cytochrome c oxidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYTOCHROME-C-OXIDASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004129"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.9.3.1"^^xsd:string ; + owl:hasValue "8283 \"cytochrome-c oxidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8283 \"cytochrome-c oxidase activity\""^^xsd:string ; + owl:hasValue "1.9.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004129"^^xsd:string ; + owl:hasValue "CYTOCHROME-C-OXIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -159490,19 +159490,19 @@ bo:3860 a sybio:NegativelyRegulatedOperator , owl:NamedIndiv rdfs:label "regulation of cell redox homeostasis"@en , "GO:0045454"@en , "regulation of redox homeostasis"@en , "cell redox homeostasis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045867"^^xsd:string ; + owl:hasValue "GO:0030503"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045868"^^xsd:string ; + owl:hasValue "GO:0045454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045454"^^xsd:string ; + owl:hasValue "GO:0045868"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030503"^^xsd:string ; + owl:hasValue "GO:0045867"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -159720,16 +159720,6 @@ bo:16342 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11818"@en ; tawny:name "16342"@en . -bo:16430 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovI"@en ; - rdfs:label "NOVI"@en ; - sybio:accession "Q9L9F9"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16431 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12702"@en ; - tawny:name "16430"@en . - bo:22288 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.14.13.5"@en ; @@ -159742,6 +159732,16 @@ bo:22288 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22288"@en . +bo:16430 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovI"@en ; + rdfs:label "NOVI"@en ; + sybio:accession "Q9L9F9"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16431 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12702"@en ; + tawny:name "16430"@en . + bo:28013 a sybio:RBS , owl:NamedIndividual ; rdfs:label "ydcA_RBS"@en ; sybio:NA "ATGAAGAAAAGGGGCTCGGA"^^xsd:string ; @@ -160149,16 +160149,6 @@ bo:4476 a owl:NamedIndividual , sybio:Terminator ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16217 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "haloalkane dehalogenase [EC:3.8.1.5]"@en ; - rdfs:label "E3.8.1.5"@en , "DHAA"@en ; - sybio:accession "COG0596"^^xsd:string , "0018786"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16218 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01563"@en ; - tawny:name "16217"@en . - bo:4564 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ydfR_terminator"@en ; sybio:NA "CGCTTGTGGCATTTTGCAGGTTTTTGTCTCTTACT"^^xsd:string ; @@ -160171,6 +160161,16 @@ bo:4564 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4563 ; tawny:name "4564"@en . +bo:16217 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "haloalkane dehalogenase [EC:3.8.1.5]"@en ; + rdfs:label "E3.8.1.5"@en , "DHAA"@en ; + sybio:accession "COG0596"^^xsd:string , "0018786"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16218 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01563"@en ; + tawny:name "16217"@en . + bo:16305 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]"@en ; rdfs:label "E1.13.11.3A"@en , "PCAG"@en ; @@ -160403,11 +160403,11 @@ bo:17134 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CHK"@en , "E2.7.1.32"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0510"^^xsd:string ; + owl:hasValue "0004103"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004103"^^xsd:string ; + owl:hasValue "COG0510"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -160501,11 +160501,11 @@ bo:10931 a sybio:Protein , bo:1676 , owl:NamedIndividual ; rdfs:label "phosphotransferase activity, for other substituted phosphate groups"@en , "GO:0016780"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016780"^^xsd:string ; + owl:hasValue "1452 \"phosphotransferase activity, for other substituted phosphate groups\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1452 \"phosphotransferase activity, for other substituted phosphate groups\""^^xsd:string ; + owl:hasValue "GO:0016780"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -160856,19 +160856,19 @@ bo:24085 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "uridine diphosphoglucose epimerase"@en , "galactowaldenase"@en , "uridine diphospho-galactose-4-epimerase"@en , "uridine diphosphate galactose 4-epimerase"@en , "GO:0003978"@en , "UDP-D-galactose 4-epimerase"@en , "4-epimerase"@en , "UDP-glucose epimerase"@en , "UDPG-4-epimerase"@en , "uridine diphosphate glucose 4-epimerase"@en , "uridine diphosphoglucose 4-epimerase"@en , "UDPgalactose 4-epimerase"@en , "UDPglucose 4-epimerase"@en , "UDP-glucose 4-epimerase"@en , "UDP-galactose 4-epimerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.2"^^xsd:string ; + owl:hasValue "12673 \"UDP-glucose 4-epimerase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UDPGLUCEPIM-RXN"^^xsd:string ; + owl:hasValue "GO:0003978"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003978"^^xsd:string ; + owl:hasValue "5.1.3.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12673 \"UDP-glucose 4-epimerase activity\""^^xsd:string ; + owl:hasValue "UDPGLUCEPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -161028,11 +161028,11 @@ bo:5532 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "carboxyl- and carbamoyltransferase"@en , "carboxyl- or carbamoyltransferase"@en , "GO:0016743"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.3.-"^^xsd:string ; + owl:hasValue "GO:0016743"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016743"^^xsd:string ; + owl:hasValue "2.1.3.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -161052,15 +161052,15 @@ bo:5620 a sybio:Operon , owl:NamedIndividual ; rdfs:label "decarboxylase"@en , "GO:0016831"@en , "carboxy-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1605 \"carboxy-lyase activity\""^^xsd:string ; + owl:hasValue "4.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016831"^^xsd:string ; + owl:hasValue "1605 \"carboxy-lyase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.-"^^xsd:string ; + owl:hasValue "GO:0016831"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -162876,11 +162876,11 @@ bo:14261 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "met"^^xsd:string ; + owl:hasValue "GO:0006567"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006567"^^xsd:string ; + owl:hasValue "met"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -163084,10 +163084,10 @@ bo:2396 a sybio:Protein , bo:1518 , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.;"@en ; - rdfs:label "NAD-specific aromatic alcohol dehydrogenase"@en , "NADH-aldehyde dehydrogenase"@en , "alcohol:NAD+ oxidoreductase"@en , "GO:0004022"@en , "NAD-dependent alcohol dehydrogenase"@en , "aliphatic alcohol dehydrogenase"@en , "NADH-alcohol dehydrogenase"@en , "primary alcohol dehydrogenase"@en , "alcohol dehydrogenase (NAD)"@en , "yeast alcohol dehydrogenase"@en , "alcohol dehydrogenase"@en , "ethanol dehydrogenase"@en , "ADH"@en ; + rdfs:label "NAD-specific aromatic alcohol dehydrogenase"@en , "NADH-aldehyde dehydrogenase"@en , "GO:0004022"@en , "alcohol:NAD+ oxidoreductase"@en , "NAD-dependent alcohol dehydrogenase"@en , "aliphatic alcohol dehydrogenase"@en , "NADH-alcohol dehydrogenase"@en , "primary alcohol dehydrogenase"@en , "alcohol dehydrogenase (NAD)"@en , "yeast alcohol dehydrogenase"@en , "alcohol dehydrogenase"@en , "ethanol dehydrogenase"@en , "ADH"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004022"^^xsd:string ; + owl:hasValue "ALCOHOL-DEHYDROG-GENERIC-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -163095,7 +163095,7 @@ bo:2396 a sybio:Protein , bo:1518 , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALCOHOL-DEHYDROG-GENERIC-RXN"^^xsd:string ; + owl:hasValue "GO:0004022"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -163735,19 +163735,19 @@ bo:17738 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase"@en , "GO:0050515"@en , "CDP-ME kinase"@en , "4-diphosphocytidyl-2C-methyl-D-erythritol kinase"@en , "CMK"@en , "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase"@en , "2-phosphotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050515"^^xsd:string ; + owl:hasValue "GO:0008698"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.148-RXN"^^xsd:string ; + owl:hasValue "2.7.1.148"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.148"^^xsd:string ; + owl:hasValue "2.7.1.148-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008698"^^xsd:string ; + owl:hasValue "GO:0050515"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -163829,11 +163829,11 @@ bo:17914 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.5.1.19"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1335"^^xsd:string ; + owl:hasValue "0008936"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008936"^^xsd:string ; + owl:hasValue "COG1335"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -163956,11 +163956,11 @@ bo:21227 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:label "GO:0008276"@en , "protein methyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008276"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008276"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -164038,11 +164038,11 @@ bo:18655 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "LPXA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1043"^^xsd:string ; + owl:hasValue "0008780"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008780"^^xsd:string ; + owl:hasValue "COG1043"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -164494,15 +164494,15 @@ bo:6877 a sybio:Protein , owl:NamedIndividual ; rdfs:label "acyltransferase"@en , "GO:0008415"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.-"^^xsd:string ; + owl:hasValue "1091 \"acyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1091 \"acyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0008415"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008415"^^xsd:string ; + owl:hasValue "2.3.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -164541,11 +164541,11 @@ bo:18706 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "B4GALNT1"@en , "GALGT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003947"^^xsd:string ; + owl:hasValue "GT12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT12"^^xsd:string ; + owl:hasValue "0003947"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -164794,7 +164794,7 @@ bo:19623 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "methyltransferase tetrahydropteroylglutamate-homocysteine transmethylase"@en , "cobalamin-independent methionine synthase"@en , "GO:0003871"@en , "homocysteine methylase"@en , "methyltetrahydropteroylpolyglutamate:homocysteine methyltransferase"@en , "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase"@en , "tetrahydropteroylglutamate-homocysteine transmethylase"@en , "MetE"@en , "tetrahydropteroyltriglutamate methyltransferase"@en , "5-methyltetrahydropteroyltri-L-glutamate:L-homocysteine S-methyltransferase"@en , "methionine synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.14"^^xsd:string ; + owl:hasValue "HOMOCYSMET-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -164802,7 +164802,7 @@ bo:19623 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMOCYSMET-RXN"^^xsd:string ; + owl:hasValue "2.1.1.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -165164,7 +165164,7 @@ bo:32873 a sybio:CDS , owl:NamedIndividual ; rdfs:label "quaternary-ammonium-compound-transporting ATPase"@en , "quaternary amine uptake transporter"@en , "GO:0015418"@en , "glycine betaine proline porter"@en , "quaternary-ammonium-compound ABC transporter"@en , "quaternary-amine-transporting ATPase"@en , "ATP phosphohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.32"^^xsd:string ; + owl:hasValue "GO:0015418"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -165172,7 +165172,7 @@ bo:32873 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015418"^^xsd:string ; + owl:hasValue "3.6.3.32"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -165511,19 +165511,19 @@ bo:31919 a sybio:CDS , owl:NamedIndividual ; rdfs:label "translation elongation factor"@en , "GO:0003746"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008182"^^xsd:string ; + owl:hasValue "GO:0003746"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003746"^^xsd:string ; + owl:hasValue "GO:0008183"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10616 \"translation elongation factor activity\""^^xsd:string ; + owl:hasValue "GO:0008182"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008183"^^xsd:string ; + owl:hasValue "10616 \"translation elongation factor activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -165543,11 +165543,11 @@ bo:31919 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003922"^^xsd:string ; + owl:hasValue "6.3.5.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.2"^^xsd:string ; + owl:hasValue "GO:0003922"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -165646,7 +165646,7 @@ bo:12181 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HISTALDEHYD-RXN"^^xsd:string ; + owl:hasValue "1.1.1.23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -165654,7 +165654,7 @@ bo:12181 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.23"^^xsd:string ; + owl:hasValue "HISTALDEHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -165759,7 +165759,7 @@ bo:32924 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004751"^^xsd:string ; + owl:hasValue "14263 \"ribose-5-phosphate isomerase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -165767,7 +165767,7 @@ bo:32924 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14263 \"ribose-5-phosphate isomerase activity\""^^xsd:string ; + owl:hasValue "GO:0004751"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -166084,11 +166084,11 @@ bo:14689 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "KORD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047553"^^xsd:string ; + owl:hasValue "COG1144"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1144"^^xsd:string ; + owl:hasValue "0047553"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -166295,11 +166295,11 @@ bo:21993 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "transketolase"@en , "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase"@en , "fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase"@en , "GO:0004802"@en , "glycoaldehyde transferase"@en , "glycolaldehydetransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004802"^^xsd:string ; + owl:hasValue "15050 \"transketolase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15050 \"transketolase activity\""^^xsd:string ; + owl:hasValue "1TRANSKETO-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -166307,7 +166307,7 @@ bo:21993 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1TRANSKETO-RXN"^^xsd:string ; + owl:hasValue "GO:0004802"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -166676,15 +166676,15 @@ bo:16399 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "base-excision repair"@en , "GO:0006284"@en , "BER"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581693 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "599711 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595410 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "536696 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469923 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "507585 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -166692,11 +166692,11 @@ bo:16399 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592600 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "469923 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585838 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "597350 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -166704,75 +166704,75 @@ bo:16399 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547778 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "557884 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597350 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "598167 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507585 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "448807 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487778 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "73884 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598167 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "568482 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599711 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "487778 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542429 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "581693 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600615 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "GO:0006284"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Base_excision_repair"^^xsd:string ; + owl:hasValue "517555 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568482 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "Base_excision_repair"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531313 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "600615 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526422 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "585838 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448807 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "592600 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517555 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "542429 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557884 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "526422 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536696 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "547778 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006284"^^xsd:string ; + owl:hasValue "531313 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73884 \"Base Excision Repair\""^^xsd:string ; + owl:hasValue "595410 \"Base Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -167134,11 +167134,11 @@ bo:1247 a owl:Class ; rdfs:label "GO:0030604"@en , "DXP-reductoisomerase"@en , "DOXP reductoisomerase"@en , "2-C-methyl-D-erythritol-4-phosphate:NADP+ oxidoreductase"@en , "1-deoxy-D-xylulose-5-phosphate isomeroreductase"@en , "1-deoxyxylulose-5-phosphate reductoisomerase"@en , "1-deoxy-D-xylulose-5-phosphate reductoisomerase"@en , "2C-methyl-D-erythritol-4-phosphate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.267"^^xsd:string ; + owl:hasValue "DXPREDISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DXPREDISOM-RXN"^^xsd:string ; + owl:hasValue "1.1.1.267"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -167206,17 +167206,6 @@ bo:17580 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04110"@en ; tawny:name "17580"@en . -bo:1423 a owl:Class ; - rdfs:label "COG0497"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0497"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1423"@en . - bo:29163 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU00390"@en ; rdfs:label "yabD"@en , "BSU00390"@en ; @@ -167242,6 +167231,17 @@ bo:29163 a owl:NamedIndividual , sybio:CDS ; "221.0"@en ; tawny:name "29163"@en . +bo:1423 a owl:Class ; + rdfs:label "COG0497"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0497"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1423"@en . + bo:691 a owl:Class ; rdfs:label "COG1228"@en ; rdfs:subClassOf bo:201 , sybio:COG ; @@ -167342,16 +167342,6 @@ bo:4885 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4884 ; tawny:name "4885"@en . -bo:16538 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "phosphinothricin tripeptide acetyl hydrolase"@en ; - rdfs:label "DEA"@en ; - sybio:accession "Q56171"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16539 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12915"@en ; - tawny:name "16538"@en . - a owl:Class ; rdfs:comment "The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA."@en ; @@ -167364,15 +167354,15 @@ bo:16538 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16626 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "aldoxime dehydratase [EC:4.99.1.5]"@en ; - rdfs:label "OXDA"@en ; - sybio:accession "0034013"^^xsd:string ; +bo:16538 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "phosphinothricin tripeptide acetyl hydrolase"@en ; + rdfs:label "DEA"@en ; + sybio:accession "Q56171"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16625 ; + sybio:encodes bo:16539 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13028"@en ; - tawny:name "16626"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12915"@en ; + tawny:name "16538"@en . bo:4973 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ykvW_terminator"@en ; @@ -167386,6 +167376,16 @@ bo:4973 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4972 ; tawny:name "4973"@en . +bo:16626 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "aldoxime dehydratase [EC:4.99.1.5]"@en ; + rdfs:label "OXDA"@en ; + sybio:accession "0034013"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16625 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13028"@en ; + tawny:name "16626"@en . + bo:28209 a sybio:RBS , owl:NamedIndividual ; rdfs:label "spoVR_RBS"@en ; sybio:NA "CCAAGTAGGGGGGATTCGG"^^xsd:string ; @@ -167405,11 +167405,11 @@ bo:16714 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0438"^^xsd:string ; + owl:hasValue "0046524"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046524"^^xsd:string ; + owl:hasValue "COG0438"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -167652,16 +167652,6 @@ bo:566 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "566"@en . -bo:17543 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "malyl-CoA lyase [EC:4.1.3.24]"@en ; - rdfs:label "E4.1.3.24"@en ; - sybio:accession "0050083"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17544 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08691"@en ; - tawny:name "17543"@en . - bo:5890 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "tagC_terminator"@en ; sybio:NA "TCAAATAGGCTGTAGCTATTTAATAGCTACAGCCTATTTGCAACTTTCTAA"^^xsd:string ; @@ -167674,6 +167664,16 @@ bo:5890 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:5889 ; tawny:name "5890"@en . +bo:17543 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "malyl-CoA lyase [EC:4.1.3.24]"@en ; + rdfs:label "E4.1.3.24"@en ; + sybio:accession "0050083"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17544 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08691"@en ; + tawny:name "17543"@en . + bo:29126 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU11830"@en ; sybio:accession "BSU11830"^^xsd:string ; @@ -167700,16 +167700,6 @@ bo:654 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "654"@en . -bo:17631 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "benzylsuccinate CoA-transferase BbsE subunit [EC:2.8.3.15]"@en ; - rdfs:label "E2.8.3.15E"@en , "BBSE"@en ; - sybio:accession "0018728"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17630 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; - tawny:name "17631"@en . - bo:23489 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "ATP"@en , "1,2-diacylglycerol 3-phosphotransferase"@en , "C00002 + C00641 <=> C00008 + C00416"@en , "cpd:C00641 => cpd:C00641"@en ; @@ -167722,6 +167712,16 @@ bo:23489 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:23677 ; tawny:name "23489"@en . +bo:17631 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "benzylsuccinate CoA-transferase BbsE subunit [EC:2.8.3.15]"@en ; + rdfs:label "E2.8.3.15E"@en , "BBSE"@en ; + sybio:accession "0018728"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17630 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; + tawny:name "17631"@en . + bo:29214 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01450"@en ; rdfs:label "ybaD"@en , "ybxA"@en , "BSU01450"@en ; @@ -167894,7 +167894,7 @@ bo:18196 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "UBIB"@en , "FRE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008752"^^xsd:string ; + owl:hasValue "0047138"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -167902,7 +167902,7 @@ bo:18196 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047138"^^xsd:string ; + owl:hasValue "0008752"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -167916,7 +167916,7 @@ bo:18196 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "endonuclease VIII"@en , "phosphodiesterase"@en , "phosphoric diester hydrolase"@en , "GO:0008081"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008081"^^xsd:string ; + owl:hasValue "GO:0016792"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -167924,7 +167924,7 @@ bo:18196 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016792"^^xsd:string ; + owl:hasValue "GO:0008081"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -168214,11 +168214,11 @@ bo:17506 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "OXC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008949"^^xsd:string ; + owl:hasValue "COG0028"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0028"^^xsd:string ; + owl:hasValue "0008949"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -168396,11 +168396,11 @@ bo:18247 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "MVAD"@en , "E4.1.1.33"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3407"^^xsd:string ; + owl:hasValue "0004163"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004163"^^xsd:string ; + owl:hasValue "COG3407"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -171134,11 +171134,11 @@ bo:1052 a owl:Class ; rdfs:label "GO:0008685"@en , "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"@en , "MECP synthase"@en , "CMP-lyase"@en , "MECDP-synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.6.1.12"^^xsd:string ; + owl:hasValue "GO:0008685"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008685"^^xsd:string ; + owl:hasValue "4.6.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -171195,11 +171195,11 @@ bo:18976 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.4.1.38"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003831"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0003831"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -171317,16 +171317,6 @@ bo:16255 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10219"@en ; tawny:name "16255"@en . -bo:16343 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "indoleamine 2,3-dioxygenase [EC:1.13.11.52]"@en ; - rdfs:label "INDO"@en ; - sybio:accession "0004426"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16344 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00463"@en ; - tawny:name "16343"@en . - bo:4690 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yfjS_terminator"@en ; sybio:NA "AAAGACCTCTCCTTAAACGGAGAGGCTTTTCTTTATTTTAT"^^xsd:string ; @@ -171339,15 +171329,15 @@ bo:4690 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4689 ; tawny:name "4690"@en . -bo:16431 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovI"@en ; - rdfs:label "NOVI"@en ; - sybio:accession "Q9L9F9"^^xsd:string ; +bo:16343 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "indoleamine 2,3-dioxygenase [EC:1.13.11.52]"@en ; + rdfs:label "INDO"@en ; + sybio:accession "0004426"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16430 ; + sybio:encodes bo:16344 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12702"@en ; - tawny:name "16431"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00463"@en ; + tawny:name "16343"@en . bo:22289 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; @@ -171360,6 +171350,16 @@ bo:22289 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11605 ; tawny:name "22289"@en . +bo:16431 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovI"@en ; + rdfs:label "NOVI"@en ; + sybio:accession "Q9L9F9"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16430 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12702"@en ; + tawny:name "16431"@en . + bo:28014 a sybio:Shim , owl:NamedIndividual ; rdfs:label "ydcA_RBS_upstream"@en ; sybio:NA "TACCAAA"^^xsd:string ; @@ -171747,6 +171747,14 @@ bo:4477 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yckK,yckJ,yckI"@en ; tawny:name "4477"@en . +bo:4565 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydfS"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30847 ; + sybio:operonGenes "ydfS"@en ; + tawny:name "4565"@en . + bo:16218 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "haloalkane dehalogenase [EC:3.8.1.5]"@en ; rdfs:label "E3.8.1.5"@en , "DHAA"@en ; @@ -171757,14 +171765,6 @@ bo:16218 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01563"@en ; tawny:name "16218"@en . -bo:4565 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydfS"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30847 ; - sybio:operonGenes "ydfS"@en ; - tawny:name "4565"@en . - bo:16306 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]"@en ; rdfs:label "E1.13.11.3A"@en , "PCAG"@en ; @@ -171878,11 +171878,11 @@ bo:16129 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "FEAB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0008957"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008957"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -172414,10 +172414,6 @@ bo:18140 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: UDP-glucose + 2 NAD+ + H2O = UDP-glucuronate + 2 NADH + H+."@en ; rdfs:label "UDP-glucose 6-dehydrogenase"@en , "GO:0003979"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12674 \"UDP-glucose 6-dehydrogenase activity\""^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0003979"^^xsd:string ; owl:onProperty sybio:accession @@ -172430,6 +172426,10 @@ bo:18140 a sybio:KOGE , owl:NamedIndividual ; owl:hasValue "1.1.1.22"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "12674 \"UDP-glucose 6-dehydrogenase activity\""^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -172597,15 +172597,15 @@ bo:5621 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "aldehyde-lyase"@en , "aldolase"@en , "GO:0016832"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016228"^^xsd:string ; + owl:hasValue "GO:0016832"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016832"^^xsd:string ; + owl:hasValue "4.1.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.-"^^xsd:string ; + owl:hasValue "GO:0016228"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -172617,15 +172617,15 @@ bo:5621 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "pseudouridine synthesis"@en , "GO:0001522"@en , "pseudouridylation"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0001522"^^xsd:string ; + owl:hasValue "Pseudouridylation"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Pseudouridylation"^^xsd:string ; + owl:hasValue "Pseudouridine"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Pseudouridine"^^xsd:string ; + owl:hasValue "GO:0001522"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -172637,11 +172637,11 @@ bo:5621 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "pyroglutamyl-peptidase"@en , "GO:0016920"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016920"^^xsd:string ; + owl:hasValue "3.4.19.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.19.-"^^xsd:string ; + owl:hasValue "GO:0016920"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -173089,15 +173089,15 @@ bo:5408 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "oxidoreductase"@en , "NAD-specific malic enzyme"@en , "GO:0016619"@en , "'malic' enzyme"@en , "NAD-linked malic enzyme"@en , "NAD-malic enzyme"@en , "malate dehydrogenase (oxaloacetate-decarboxylating)"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016619"^^xsd:string ; + owl:hasValue "1.1.1.38"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MALIC-NAD-RXN"^^xsd:string ; + owl:hasValue "GO:0016619"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.38"^^xsd:string ; + owl:hasValue "MALIC-NAD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -173692,11 +173692,11 @@ sybio:bindsTo a owl:ObjectProperty . rdfs:label "PQQ biosynthetic process"@en , "GO:0018189"@en , "pyrroloquinoline quinone synthesis"@en , "coenzyme pyrroloquinoline-quinone biosynthetic process"@en , "coenzyme pyrroloquinoline-quinone biosynthesis"@en , "pyrroloquinoline-quinone biosynthetic process"@en , "pyrroloquinoline quinone biosynthesis"@en , "pyrroloquinoline quinone anabolism"@en , "PQQ biosynthesis"@en , "pyrroloquinoline quinone formation"@en , "pyrroloquinoline quinone biosynthetic process"@en , "pyrroloquinoline-quinone biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0018189"^^xsd:string ; + owl:hasValue "AA0283"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0283"^^xsd:string ; + owl:hasValue "GO:0018189"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -174247,11 +174247,11 @@ bo:9838 a owl:NamedIndividual , sybio:Protein ; rdfs:label "mitochondria"@en , "mitochondrion"@en , "GO:0005739"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005739"^^xsd:string ; + owl:hasValue "Mitochondrion"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Mitochondrion"^^xsd:string ; + owl:hasValue "GO:0005739"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -174557,11 +174557,11 @@ bo:14350 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0006568"@en , "tryptophan metabolism"@en , "tryptophan metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Tryptophan"^^xsd:string ; + owl:hasValue "GO:0006568"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006568"^^xsd:string ; + owl:hasValue "Tryptophan"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -175220,11 +175220,11 @@ bo:18781 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "B4GALT2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0003831"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003831"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -176348,19 +176348,19 @@ bo:19624 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "phosphofructokinase I"@en , "6-phosphofructokinase"@en , "ATP-dependent phosphofructokinase"@en , "PFK"@en , "6-phosphofructokinase reduction"@en , "6-phosphofructose 1-kinase"@en , "phosphohexokinase"@en , "fructose 6-phosphokinase"@en , "D-fructose-6-phosphate 1-phosphotransferase"@en , "nucleotide triphosphate-dependent phosphofructokinase"@en , "ATP:D-fructose-6-phosphate 1-phosphotransferase"@en , "phospho-1 6-fructokinase"@en , "phosphofructokinase"@en , "GO:0003872"@en , "fructose 6-phosphate kinase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11692 \"6-phosphofructokinase activity\""^^xsd:string ; + owl:hasValue "6PFRUCTPHOS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003872"^^xsd:string ; + owl:hasValue "2.7.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6PFRUCTPHOS-RXN"^^xsd:string ; + owl:hasValue "11692 \"6-phosphofructokinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.11"^^xsd:string ; + owl:hasValue "GO:0003872"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -176731,11 +176731,11 @@ bo:32874 a sybio:CDS , owl:NamedIndividual ; rdfs:label "sulfate-transporting ATPase"@en , "sulphate-transporting ATPase"@en , "ATP phosphohydrolase"@en , "GO:0015419"@en , "sulfate thiosulfate porter"@en , "sulfate transporting ATPase"@en , "sulphate transporting ATPase"@en , "sulfate transmembrane-transporting ATPase"@en , "sulfate ABC transporter"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.25"^^xsd:string ; + owl:hasValue "3.6.3.25-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.25-RXN"^^xsd:string ; + owl:hasValue "3.6.3.25"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -177047,15 +177047,15 @@ bo:11441 a sybio:Protein , owl:NamedIndividual , bo:832 ; rdfs:label "translation release factor"@en , "GO:0003747"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003749"^^xsd:string ; + owl:hasValue "GO:0003748"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003747"^^xsd:string ; + owl:hasValue "GO:0003749"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003748"^^xsd:string ; + owl:hasValue "GO:0003747"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -177252,7 +177252,7 @@ bo:13949 a sybio:Compound , owl:NamedIndividual ; rdfs:label "5 10-methylenetetrahydrofolate:NADP+ oxidoreductase"@en , "methylenetetrahydrofolate dehydrogenase (NADP+)"@en , "5 10-methylenetetrahydrofolate:NADP oxidoreductase"@en , "GO:0004488"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.5.1.5"^^xsd:string ; + owl:hasValue "GO:0004488"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -177260,7 +177260,7 @@ bo:13949 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004488"^^xsd:string ; + owl:hasValue "1.5.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -177322,17 +177322,17 @@ bo:32925 a owl:NamedIndividual , sybio:CDS ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: prephenate = phenylpyruvate + H2O + CO2."@en ; rdfs:label "GO:0004664"@en , "prephenate dehydratase"@en , "prephenate hydro-lyase"@en ; - rdfs:subClassOf , sybio:MolecularFunction ; + rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004664"^^xsd:string ; + owl:hasValue "4.2.1.51"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PREPHENATEDEHYDRAT-RXN"^^xsd:string ; + owl:hasValue "GO:0004664"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.51"^^xsd:string ; + owl:hasValue "PREPHENATEDEHYDRAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -177796,14 +177796,14 @@ bo:21994 a sybio:Reaction , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate."@en ; - rdfs:label "janus kinase 1"@en , "non-specific protein-tyrosine kinase"@en , "ATP:protein-tyrosine O-phosphotransferase"@en , "focal adhesion kinase"@en , "p60c-src protein tyrosine kinase"@en , "ATP:protein-L-tyrosine O-phosphotransferase"@en , "cytoplasmic protein tyrosine kinase"@en , "janus kinase 3"@en , "Bruton's tyrosine kinase"@en , "non-membrane spanning protein tyrosine kinase"@en , "GO:0004715"@en , "janus kinase 2"@en ; + rdfs:label "janus kinase 1"@en , "non-specific protein-tyrosine kinase"@en , "ATP:protein-tyrosine O-phosphotransferase"@en , "p60c-src protein tyrosine kinase"@en , "focal adhesion kinase"@en , "ATP:protein-L-tyrosine O-phosphotransferase"@en , "cytoplasmic protein tyrosine kinase"@en , "janus kinase 3"@en , "Bruton's tyrosine kinase"@en , "non-membrane spanning protein tyrosine kinase"@en , "GO:0004715"@en , "janus kinase 2"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.10.1-RXN"^^xsd:string ; + owl:hasValue "2.7.10.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.10.2"^^xsd:string ; + owl:hasValue "2.7.10.1-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -178005,11 +178005,11 @@ bo:14917 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.4.1.82"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047274"^^xsd:string ; + owl:hasValue "GH36"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GH36"^^xsd:string ; + owl:hasValue "0047274"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -178232,11 +178232,11 @@ bo:16576 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PCYT2"@en , "E2.7.7.14"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004306"^^xsd:string ; + owl:hasValue "COG0615"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0615"^^xsd:string ; + owl:hasValue "0004306"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -178567,11 +178567,11 @@ bo:1248 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.19"^^xsd:string ; + owl:hasValue "GO:0050182"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050182"^^xsd:string ; + owl:hasValue "2.3.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -178626,17 +178626,6 @@ bo:17581 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04110"@en ; tawny:name "17581"@en . -bo:1424 a owl:Class ; - rdfs:label "COG1438"@en ; - rdfs:subClassOf bo:223 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1438"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1424"@en . - bo:29164 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00530"@en ; rdfs:label "pth"@en , "spoVC"@en , "BSU00530"@en ; @@ -178662,6 +178651,17 @@ bo:29164 a sybio:CDS , owl:NamedIndividual ; "107.0"@en ; tawny:name "29164"@en . +bo:1424 a owl:Class ; + rdfs:label "COG1438"@en ; + rdfs:subClassOf bo:223 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1438"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1424"@en . + bo:692 a owl:Class ; rdfs:label "COG4496"@en ; rdfs:subClassOf bo:176 , sybio:COG ; @@ -178833,6 +178833,14 @@ bo:16539 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4974 a owl:NamedIndividual , sybio:Operon ; + rdfs:label "ptsGHI"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31377 , bo:29005 , bo:28614 ; + sybio:operonGenes "ptsG,ptsH,ptsI"@en ; + tawny:name "4974"@en . + bo:16627 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "aldoxime dehydratase [EC:4.99.1.5]"@en ; rdfs:label "OXDA"@en ; @@ -178846,14 +178854,6 @@ bo:16627 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13028"@en ; tawny:name "16627"@en . -bo:4974 a owl:NamedIndividual , sybio:Operon ; - rdfs:label "ptsGHI"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31377 , bo:29005 , bo:28614 ; - sybio:operonGenes "ptsG,ptsH,ptsI"@en ; - tawny:name "4974"@en . - bo:16715 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]"@en ; rdfs:label "RFBF"@en ; @@ -178870,11 +178870,11 @@ bo:16715 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "folic acid anabolism"@en , "vitamin B9 biosynthetic process"@en , "folic acid biosynthesis"@en , "vitamin B9 biosynthesis"@en , "folate biosynthesis"@en , "folic acid biosynthetic process"@en , "folate biosynthetic process"@en , "folic acid formation"@en , "GO:0046656"@en , "vitamin M biosynthesis"@en , "folic acid synthesis"@en , "vitamin M biosynthetic process"@en ; rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Folic_acid"^^xsd:string ; + owl:hasValue "FOLSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FOLSYN-PWY"^^xsd:string ; + owl:hasValue "Folic_acid"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -179037,27 +179037,27 @@ bo:20116 a owl:NamedIndividual , sybio:Enzyme ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448734 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; + owl:hasValue "487553 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007165"^^xsd:string ; + owl:hasValue "469856 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "212718 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; + owl:hasValue "507509 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487553 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; + owl:hasValue "212718 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507509 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; + owl:hasValue "GO:0007165"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469856 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; + owl:hasValue "448734 \"EGFR interacts with phospholipase C-gamma\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -179100,11 +179100,11 @@ bo:17368 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PFLD"@en , "E2.3.1.54"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008861"^^xsd:string ; + owl:hasValue "COG1882"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1882"^^xsd:string ; + owl:hasValue "0008861"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -179170,6 +179170,14 @@ bo:567 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "567"@en . +bo:5891 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "lytD"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28809 ; + sybio:operonGenes "lytD"@en ; + tawny:name "5891"@en . + bo:17544 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "malyl-CoA lyase [EC:4.1.3.24]"@en ; rdfs:label "E4.1.3.24"@en ; @@ -179180,14 +179188,6 @@ bo:17544 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08691"@en ; tawny:name "17544"@en . -bo:5891 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "lytD"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28809 ; - sybio:operonGenes "lytD"@en ; - tawny:name "5891"@en . - bo:29127 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BG12998"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -179453,6 +179453,22 @@ bo:21121 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:21192 , bo:11580 ; tawny:name "21121"@en . +bo:2128 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "conserved hypothetical protein;BSU18510"@en ; + rdfs:label "YoxC"@en , "BSU18510"@en ; + sybio:AA "MIIVYISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEVPQAVKEVWQAGHFNSR"@en ; + sybio:accession "BSU18510"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:31557 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "6 : No similarity"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "11391.94"^^xsd:string ; + sybio:pI "9.561501"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2128"@en . + bo:18285 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]"@en ; rdfs:label "NIFK"@en ; @@ -179469,32 +179485,16 @@ bo:18285 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "GO:0008170"@en , "N-methyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008170"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008170"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2128 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "conserved hypothetical protein;BSU18510"@en ; - rdfs:label "YoxC"@en , "BSU18510"@en ; - sybio:AA "MIIVYISLAVLAVSIIFLGVTVIQNKKKIDPALKELSSVTQAMQKQIEGLKTETELLTQKQKKIQQDVQIKKYTLQQTAAEVKEVPQAVKEVWQAGHFNSR"@en ; - sybio:accession "BSU18510"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:31557 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "6 : No similarity"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "11391.94"^^xsd:string ; - sybio:pI "9.561501"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2128"@en . - bo:30794 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01910;"@en ; rdfs:label "ybcO"@en , "skfA"@en , "BSU01910"@en ; @@ -179720,11 +179720,11 @@ bo:5766 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.132-RXN"^^xsd:string ; + owl:hasValue "GO:0016977"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016977"^^xsd:string ; + owl:hasValue "3.2.1.132-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -179773,11 +179773,11 @@ bo:618 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.41-RXN"^^xsd:string ; + owl:hasValue "4.2.1.41"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.41"^^xsd:string ; + owl:hasValue "4.2.1.41-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -180899,11 +180899,11 @@ bo:19128 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.16"^^xsd:string ; + owl:hasValue "SUCCSEMIALDDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SUCCSEMIALDDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.2.1.16"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -182182,7 +182182,7 @@ bo:14722 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "nonselective cation channel"@en , "GO:0005261"@en , "cation channel"@en , "cation diffusion facilitator"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015338"^^xsd:string ; + owl:hasValue "GO:0005261"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -182190,7 +182190,7 @@ bo:14722 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005261"^^xsd:string ; + owl:hasValue "GO:0015338"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -182337,11 +182337,11 @@ bo:15199 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "HPPD"@en , "HPD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3185"^^xsd:string ; + owl:hasValue "0003868"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003868"^^xsd:string ; + owl:hasValue "COG3185"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -182411,11 +182411,11 @@ bo:15463 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E2.6.1.2"@en , "GPT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004021"^^xsd:string ; + owl:hasValue "COG0436"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0436"^^xsd:string ; + owl:hasValue "0004021"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -182779,7 +182779,7 @@ bo:1053 a owl:Class ; rdfs:label "GO:0008686"@en , "3,4-dihydroxy-2-butanone-4-phosphate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.99.12"^^xsd:string ; + owl:hasValue "GO:0008686"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -182787,7 +182787,7 @@ bo:1053 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008686"^^xsd:string ; + owl:hasValue "4.1.99.12"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -182902,11 +182902,11 @@ bo:15514 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "THRH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0560"^^xsd:string ; + owl:hasValue "0043899"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043899"^^xsd:string ; + owl:hasValue "COG0560"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -182932,6 +182932,14 @@ bo:16256 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01559"@en ; tawny:name "16256"@en . +bo:4691 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yfjR"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:29022 ; + sybio:operonGenes "yfjR"@en ; + tawny:name "4691"@en . + bo:16344 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "indoleamine 2,3-dioxygenase [EC:1.13.11.52]"@en ; rdfs:label "INDO"@en ; @@ -182942,14 +182950,6 @@ bo:16344 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00463"@en ; tawny:name "16344"@en . -bo:4691 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yfjR"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:29022 ; - sybio:operonGenes "yfjR"@en ; - tawny:name "4691"@en . - bo:16432 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "novobiocin biosynthesis protein NovI"@en ; rdfs:label "NOVI"@en ; @@ -183205,11 +183205,11 @@ bo:17173 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.1.1.8"@en , "GPD1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0240"^^xsd:string ; + owl:hasValue "0004367"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004367"^^xsd:string ; + owl:hasValue "COG0240"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -183234,11 +183234,11 @@ bo:1016 a owl:Class ; rdfs:label "rRNA methyltransferase"@en , "GO:0008649"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008649"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008649"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -183429,11 +183429,11 @@ bo:16219 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E3.8.1.5"@en , "DHAA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0596"^^xsd:string ; + owl:hasValue "0018786"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018786"^^xsd:string ; + owl:hasValue "COG0596"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -184271,11 +184271,11 @@ bo:5622 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "oxoacid lyase"@en , "oxo-acid lyase"@en , "GO:0016833"@en , "oxo-acid-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.-"^^xsd:string ; + owl:hasValue "GO:0016833"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016833"^^xsd:string ; + owl:hasValue "4.1.3.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -184505,11 +184505,11 @@ bo:18016 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.2.99.5D"@en , "FMDD"@en , "FWDD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018493"^^xsd:string ; + owl:hasValue "COG1153"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1153"^^xsd:string ; + owl:hasValue "0018493"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -185533,11 +185533,11 @@ bo:15979 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "AGUB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0388"^^xsd:string ; + owl:hasValue "0050126"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050126"^^xsd:string ; + owl:hasValue "COG0388"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -186653,15 +186653,15 @@ bo:9040 a sybio:Protein , owl:NamedIndividual , bo:466 ; rdfs:label "GO:0047982"@en , "L-homocysteine hydrogen-sulfide-lyase"@en , "homocysteine desulfurase"@en , "homocysteine desulfhydrase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMOCYSTEINE-DESULFHYDRASE-RXN"^^xsd:string ; + owl:hasValue "4.4.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047982"^^xsd:string ; + owl:hasValue "HOMOCYSTEINE-DESULFHYDRASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.2"^^xsd:string ; + owl:hasValue "GO:0047982"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -186836,11 +186836,11 @@ bo:18694 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "ALG13"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004577"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "0004577"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -186981,6 +186981,16 @@ bo:5999 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:5998 ; tawny:name "5999"@en . +bo:17828 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]"@en ; + rdfs:label "E1.2.1.46"@en ; + sybio:accession "0018467"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17829 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00148"@en ; + tawny:name "17828"@en . + bo:22095 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C03112 => cpd:C03112"@en , "C03112 + C00169 <=> C06568 + C00009"@en ; @@ -186992,16 +187002,6 @@ bo:22095 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11599 ; tawny:name "22095"@en . -bo:17828 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]"@en ; - rdfs:label "E1.2.1.46"@en ; - sybio:accession "0018467"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17829 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00148"@en ; - tawny:name "17828"@en . - bo:939 a owl:Class ; rdfs:label "COG0109"@en ; rdfs:subClassOf bo:173 , sybio:COG ; @@ -187013,6 +187013,15 @@ bo:939 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "939"@en . +bo:17916 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "nicotinamide riboside kinase 1 [EC:2.7.1.-]"@en ; + rdfs:label "NRK1"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17915 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10524"@en ; + tawny:name "17916"@en . + bo:22183 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "L-ornithine ammonia-lyase (cyclizing; L-proline-forming)"@en , "cpd:C00077 <=> cpd:C00077"@en , "C00077 <=> C00148 + C00014"@en ; @@ -187024,15 +187033,6 @@ bo:22183 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11603 ; tawny:name "22183"@en . -bo:17916 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "nicotinamide riboside kinase 1 [EC:2.7.1.-]"@en ; - rdfs:label "NRK1"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17915 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10524"@en ; - tawny:name "17916"@en . - bo:22271 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C00135 => cpd:C00135"@en , "L-histidine ammonia-lyase (urocanate-forming)"@en , "C00135 <=> C00785 + C00014"@en ; @@ -187599,11 +187599,11 @@ bo:16111 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E1.13.11.15"@en , "HPAD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3384"^^xsd:string ; + owl:hasValue "0008687"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008687"^^xsd:string ; + owl:hasValue "COG3384"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -187930,11 +187930,11 @@ bo:31958 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003698"^^xsd:string ; + owl:hasValue "GO:0003699"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003699"^^xsd:string ; + owl:hasValue "GO:0003698"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -187984,11 +187984,11 @@ bo:19713 a sybio:EC , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "O-ACETYLHOMOSERINE-THIOL-LYASE-RXN"^^xsd:string ; + owl:hasValue "2.5.1.49"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.49"^^xsd:string ; + owl:hasValue "O-ACETYLHOMOSERINE-THIOL-LYASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -188158,15 +188158,15 @@ bo:10613 a sybio:Protein , owl:NamedIndividual , bo:364 , rdfs:label "pyrophosphatase"@en , "GO:0016462"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016462"^^xsd:string ; + owl:hasValue "3.6.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3222 \"pyrophosphatase activity\""^^xsd:string ; + owl:hasValue "GO:0016462"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.-"^^xsd:string ; + owl:hasValue "3222 \"pyrophosphatase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -188694,11 +188694,11 @@ bo:24031 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "protein-synthesizing GTPase activity termination"@en , "small monomeric GTPase"@en , "dynamin GTPase"@en , "ARF small monomeric GTPase"@en , "heterotrimeric G-protein GTPase"@en , "protein-synthesizing GTPase activity initiation"@en , "signal-recognition-particle GTPase"@en , "heterotrimeric G-protein GTPase alpha-subunit"@en , "GO:0003924"@en , "Rho small monomeric GTPase"@en , "Ras small monomeric GTPase"@en , "Ran small monomeric GTPase"@en , "protein-synthesizing GTPase"@en , "GTPase"@en , "hydrolase activity acting on acid anhydrides acting on GTP involved in cellular and subcellular movement"@en , "RHEB small monomeric GTPase"@en , "Sar small monomeric GTPase"@en , "heterotrimeric G-protein GTPase gamma-subunit"@en , "protein-synthesizing GTPase activity elongation"@en , "tubulin GTPase"@en , "Rab small monomeric GTPase"@en , "heterotrimeric G-protein GTPase beta-subunit"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12513 \"GTPase activity\""^^xsd:string ; + owl:hasValue "GO:0003924"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003924"^^xsd:string ; + owl:hasValue "12513 \"GTPase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -188729,15 +188729,15 @@ bo:14992 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AGAI"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0363"^^xsd:string ; + owl:hasValue "0016861"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008786"^^xsd:string ; + owl:hasValue "COG0363"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016861"^^xsd:string ; + owl:hasValue "0008786"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -188838,11 +188838,11 @@ bo:12271 a owl:NamedIndividual , sybio:Compound ; rdfs:label "methylenetetrahydrofolate reductase"@en , "5 10-methylenetetrahydropteroylglutamate reductase"@en , "5-methyltetrahydrofolate:NADP+ oxidoreductase"@en , "N5 10-methylenetetrahydrofolate reductase"@en , "reductase"@en , "5-methyltetrahydrofolate:NAD oxidoreductase"@en , "MetF"@en , "1.7.99.5"@en , "methylenetetrahydrofolate reductase (NADPH)"@en , "5 10-methylenetetrahydrofolate reductase"@en , "MTHFR"@en , "5-methyltetrahydrofolate:NAD+ oxidoreductase"@en , "oxidoreductase"@en , "5 reductase"@en , "methylenetetrahydrofolic acid reductase"@en , "5 10-methylenetetrahydrofolic acid reductase"@en , "N5 N10-methylenetetrahydrofolate reductase"@en , "GO:0004489"@en , "5 10-CH2-H4folate reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008702"^^xsd:string ; + owl:hasValue "GO:0004489"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11594 \"methylenetetrahydrofolate reductase (NADPH) activity\""^^xsd:string ; + owl:hasValue "1.5.1.20-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -188850,11 +188850,11 @@ bo:12271 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.5.1.20-RXN"^^xsd:string ; + owl:hasValue "11594 \"methylenetetrahydrofolate reductase (NADPH) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004489"^^xsd:string ; + owl:hasValue "GO:0008702"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -190233,17 +190233,6 @@ bo:17582 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08686"@en ; tawny:name "17582"@en . -bo:1425 a owl:Class ; - rdfs:label "COG1189"@en ; - rdfs:subClassOf bo:194 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1189"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1425"@en . - bo:29165 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00540"@en ; rdfs:label "yabK"@en , "BSU00540"@en ; @@ -190269,6 +190258,17 @@ bo:29165 a sybio:CDS , owl:NamedIndividual ; "1532.0"@en ; tawny:name "29165"@en . +bo:1425 a owl:Class ; + rdfs:label "COG1189"@en ; + rdfs:subClassOf bo:194 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1189"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1425"@en . + bo:693 a owl:Class ; rdfs:label "COG1646"@en ; rdfs:subClassOf bo:183 , sybio:COG ; @@ -190427,16 +190427,6 @@ bo:4887 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4886 ; tawny:name "4887"@en . -bo:16628 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "4-hydroxyphenylacetaldehyde oxime monooxygenase [EC:1.14.13.68]"@en ; - rdfs:label "CYP71E1"@en ; - sybio:accession "O48958"^^xsd:string , "0050592"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16629 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13029"@en ; - tawny:name "16628"@en . - bo:4975 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ptsGHI_terminator"@en ; sybio:NA "AAAAACCAGACGGCCTCCGGCCTGTCTGGTTTTTTTCATAAGTA"^^xsd:string ; @@ -190449,6 +190439,16 @@ bo:4975 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4974 ; tawny:name "4975"@en . +bo:16628 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "4-hydroxyphenylacetaldehyde oxime monooxygenase [EC:1.14.13.68]"@en ; + rdfs:label "CYP71E1"@en ; + sybio:accession "O48958"^^xsd:string , "0050592"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16629 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13029"@en ; + tawny:name "16628"@en . + bo:16716 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]"@en ; rdfs:label "RFBF"@en ; @@ -190697,16 +190697,6 @@ bo:656 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "656"@en . -bo:17633 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "benzylsuccinate CoA-transferase BbsF subunit [EC:2.8.3.15]"@en ; - rdfs:label "E2.8.3.15F"@en , "BBSF"@en ; - sybio:accession "0018728"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17634 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; - tawny:name "17633"@en . - bo:5980 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "murAA_terminator"@en ; sybio:NA "GAAAATCAGTATGTCACTCTGGCATACTGGTTTTTTATTTTTTGT"^^xsd:string ; @@ -190719,6 +190709,16 @@ bo:5980 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5979 ; tawny:name "5980"@en . +bo:17633 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "benzylsuccinate CoA-transferase BbsF subunit [EC:2.8.3.15]"@en ; + rdfs:label "E2.8.3.15F"@en , "BBSF"@en ; + sybio:accession "0018728"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17634 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; + tawny:name "17633"@en . + bo:29216 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01470"@en ; rdfs:label "ybaF"@en , "BSU01470"@en ; @@ -190948,16 +190948,31 @@ bo:21122 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:21308 , bo:21185 , bo:21147 , bo:21380 ; tawny:name "21122"@en . +bo:2129 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "conserved hypothetical protein;BSU18520"@en ; + rdfs:label "BSU18520"@en , "YoxB"@en ; + sybio:AA "MIINRSCLKEFAEKVHFLPSSLTKSDLLTDPFRLHQENELGIYYSPHNEFINRDASLVIAGITPGFSQMKTAYETAAESLLQGGTLEQMAVDTKIAAGFSGSMRHNLITMLDLCGLPQAFGIQSAAKLFGELRHMLHTTSVIKYPVFIQQKNYTGYKPAITHSPILSTYAFGHFPAELNHVTGPALLIPLGKAAETVCETLIRQHSLQNLICLNGFPHPSGANGHRLKQFSKNKEQLERQIRSFAALVDFAIEKRK"@en ; + sybio:accession "BSU18520"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:31255 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "28450.745"^^xsd:string ; + sybio:pI "8.839027"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2129"@en . + bo:18286 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]"@en ; rdfs:label "NIFK"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016163"^^xsd:string ; + owl:hasValue "COG2710"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2710"^^xsd:string ; + owl:hasValue "0016163"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -190971,31 +190986,16 @@ bo:18286 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0008171"@en , "O-methyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008171"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008171"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2129 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "conserved hypothetical protein;BSU18520"@en ; - rdfs:label "BSU18520"@en , "YoxB"@en ; - sybio:AA "MIINRSCLKEFAEKVHFLPSSLTKSDLLTDPFRLHQENELGIYYSPHNEFINRDASLVIAGITPGFSQMKTAYETAAESLLQGGTLEQMAVDTKIAAGFSGSMRHNLITMLDLCGLPQAFGIQSAAKLFGELRHMLHTTSVIKYPVFIQQKNYTGYKPAITHSPILSTYAFGHFPAELNHVTGPALLIPLGKAAETVCETLIRQHSLQNLICLNGFPHPSGANGHRLKQFSKNKEQLERQIRSFAALVDFAIEKRK"@en ; - sybio:accession "BSU18520"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:31255 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "28450.745"^^xsd:string ; - sybio:pI "8.839027"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2129"@en . - bo:30795 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU02850"@en ; rdfs:label "ycdH"@en , "adcA"@en , "BSU02850"@en ; @@ -192417,11 +192417,11 @@ bo:19217 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "vitamin H biosynthesis"@en , "vitamin B7 biosynthetic process"@en , "biotin anabolism"@en , "biotin biosynthesis"@en , "vitamin H biosynthetic process"@en , "biotin formation"@en , "biotin synthesis"@en , "GO:0009102"@en , "biotin biosynthetic process"@en , "vitamin B7 biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BIOTIN-SYNTHESIS-PWY"^^xsd:string ; + owl:hasValue "PWY-3701"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-3701"^^xsd:string ; + owl:hasValue "BIOTIN-SYNTHESIS-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -192891,19 +192891,19 @@ bo:13931 a owl:NamedIndividual , sybio:Compound ; rdfs:label "malic enzyme"@en , "pyruvic-malic carboxylase"@en , "GO:0004470"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.39-RXN"^^xsd:string ; + owl:hasValue "GO:0004470"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MALIC-NADP-RXN"^^xsd:string ; + owl:hasValue "1.1.1.39-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MALIC-NAD-RXN"^^xsd:string ; + owl:hasValue "MALIC-NADP-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004470"^^xsd:string ; + owl:hasValue "MALIC-NAD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -193317,19 +193317,19 @@ bo:13806 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0004345"@en , "6-phosphoglucose dehydrogenase"@en , "Entner-doudoroff enzyme"@en , "D-glucose-6-phosphate:NADP+ 1-oxidoreductase"@en , "NADP-dependent glucose 6-phosphate dehydrogenase"@en , "NADP-glucose-6-phosphate dehydrogenase"@en , "GDH"@en , "D-glucose 6-phosphate dehydrogenase"@en , "Zwischenferment"@en , "zwischenferment"@en , "G6PDH"@en , "glucose-6-phosphate 1-dehydrogenase"@en , "G6PD"@en , "6-phosphoglucose dehydrogenas"@en , "glucose 6-phosphate dehydrogenase"@en , "glucose-6-phosphate dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10468 \"glucose-6-phosphate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "GLU6PDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.49"^^xsd:string ; + owl:hasValue "GO:0004345"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLU6PDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.1.1.49"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004345"^^xsd:string ; + owl:hasValue "10468 \"glucose-6-phosphate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -193692,19 +193692,19 @@ bo:27224 a sybio:FFL , owl:NamedIndividual ; rdfs:label "GO:0030272"@en , "5-Formyltetrahydrofolate cyclodehydrase"@en , "methenyl-THF synthetase"@en , "5-formyltetrahydrofolate cyclo-ligase"@en , "5 10-methenyltetrahydrofolate synthetase"@en , "formyltetrahydrofolic cyclodehydrase"@en , "5-formyltetrahydrofolate cyclodehydrase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030272"^^xsd:string ; + owl:hasValue "5-FORMYL-THF-CYCLO-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.3.2"^^xsd:string ; + owl:hasValue "GO:0019006"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019006"^^xsd:string ; + owl:hasValue "6.3.3.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5-FORMYL-THF-CYCLO-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0030272"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -194020,23 +194020,6 @@ bo:29908 a sybio:CDS , owl:NamedIndividual ; "175.0"@en ; tawny:name "29908"@en . -bo:3599 a sybio:Operator , sybio:NegativelyRegulatedOperator , owl:NamedIndividual ; - rdfs:comment "Negative"@en ; - rdfs:label "CcpC_citZ"@en ; - sybio:NA "ATAATGAGAATAGGCT"^^xsd:string ; - sybio:annotatedSequence "{ATAA}TGAGAATAGGCT"@en ; - sybio:begin "2982474"@en ; - sybio:boundBy bo:6917 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "2982459"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2726 ; - sybio:partOf bo:27637 , bo:2726 ; - sybio:pmid "10656796,12100558"^^xsd:string ; - sybio:regulationType "Negative"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3599"@en . - bo:9324 a bo:1084 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU15290;cell-division initiation protein"@en , "Cell division protein ftsZ"@en ; rdfs:label "Ts-1"@en , "FtsZ"@en , "BSU15290"@en , "ftsZ"@en ; @@ -194058,6 +194041,23 @@ bo:9324 a bo:1084 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "9324"@en . +bo:3599 a sybio:Operator , sybio:NegativelyRegulatedOperator , owl:NamedIndividual ; + rdfs:comment "Negative"@en ; + rdfs:label "CcpC_citZ"@en ; + sybio:NA "ATAATGAGAATAGGCT"^^xsd:string ; + sybio:annotatedSequence "{ATAA}TGAGAATAGGCT"@en ; + sybio:begin "2982474"@en ; + sybio:boundBy bo:6917 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "2982459"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2726 ; + sybio:partOf bo:27637 , bo:2726 ; + sybio:pmid "10656796,12100558"^^xsd:string ; + sybio:regulationType "Negative"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3599"@en . + bo:22680 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "4.1.1.46"@en ; @@ -194258,23 +194258,23 @@ bo:1230 a owl:Class ; rdfs:label "NAD-dependent formate dehydrogenase"@en , "formate dehydrogenase"@en , "N-FDH"@en , "formate:NAD+ oxidoreductase"@en , "GO:0008863"@en , "formic hydrogen-lyase"@en , "NAD-linked formate dehydrogenase"@en , "formic acid dehydrogenase"@en , "formate-NAD oxidoreductase"@en , "formate hydrogenlyase"@en , "FDH II"@en , "FDH I"@en , "formate benzyl-viologen oxidoreductase"@en , "NAD-formate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008863"^^xsd:string ; + owl:hasValue "FORMATEDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0080"^^xsd:string ; + owl:hasValue "1.2.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0018476"^^xsd:string ; + owl:hasValue "e0080"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.2"^^xsd:string ; + owl:hasValue "GO:0008863"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FORMATEDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0018476"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -194318,11 +194318,11 @@ bo:15427 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.1.1.148"@en , "THY1"@en , "THYX"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050797"^^xsd:string ; + owl:hasValue "COG1351"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1351"^^xsd:string ; + owl:hasValue "0050797"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -194358,6 +194358,18 @@ bo:16257 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01559"@en ; tawny:name "16257"@en . +bo:4692 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "yfjR_terminator"@en ; + sybio:NA "GAAAAGCCTCTCCGTTTAAGGAGAGGTCTTTCTCTTTTACAAA"^^xsd:string ; + sybio:annotatedSequence "GAAAA{left}GCCTCTCC{/left}GTTTAA{right}GGAGAGGT{/right}CTTTCTCTTTTACAAA"@en ; + sybio:begin "870386"@en ; + sybio:deltaGo "-16.8"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "870344"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4691 ; + tawny:name "4692"@en . + bo:16345 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "indoleamine 2,3-dioxygenase [EC:1.13.11.52]"@en ; rdfs:label "INDO"@en ; @@ -194371,17 +194383,13 @@ bo:16345 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00463"@en ; tawny:name "16345"@en . -bo:4692 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "yfjR_terminator"@en ; - sybio:NA "GAAAAGCCTCTCCGTTTAAGGAGAGGTCTTTCTCTTTTACAAA"^^xsd:string ; - sybio:annotatedSequence "GAAAA{left}GCCTCTCC{/left}GTTTAA{right}GGAGAGGT{/right}CTTTCTCTTTTACAAA"@en ; - sybio:begin "870386"@en ; - sybio:deltaGo "-16.8"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "870344"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4691 ; - tawny:name "4692"@en . +bo:4780 a owl:NamedIndividual , sybio:Operon ; + rdfs:label "yhbIJ-yhcABCDEFGHI"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31142 , bo:31252 , bo:31352 , bo:31248 , bo:31139 , bo:31684 , bo:31250 , bo:31141 , bo:31138 , bo:31140 , bo:31134 ; + sybio:operonGenes "yhbI,yhbJ,yhcA,yhcB,yhcC,yhcD,yhcE,yhcF,yhcG,yhcH,yhcI"@en ; + tawny:name "4780"@en . bo:16433 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "novobiocin biosynthesis protein NovH"@en ; @@ -194393,14 +194401,6 @@ bo:16433 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12701"@en ; tawny:name "16433"@en . -bo:4780 a owl:NamedIndividual , sybio:Operon ; - rdfs:label "yhbIJ-yhcABCDEFGHI"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31142 , bo:31252 , bo:31352 , bo:31248 , bo:31139 , bo:31684 , bo:31250 , bo:31141 , bo:31138 , bo:31140 , bo:31134 ; - sybio:operonGenes "yhbI,yhbJ,yhcA,yhcB,yhcC,yhcD,yhcE,yhcF,yhcG,yhcH,yhcI"@en ; - tawny:name "4780"@en . - bo:28016 a sybio:Shim , owl:NamedIndividual ; rdfs:label "ydcC_RBS_upstream"@en ; sybio:NA "GAGACAAGTTGTTTGAGGCTTTTATGGTACGCATCTGTTCTGCCTAAACGTGTACCGAGCGTACCGTTAAAGTCAAACAAGCGATTTCTTCCTTTTA"^^xsd:string ; @@ -195014,11 +195014,11 @@ bo:17137 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.6.1.26"@en , "CDH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2134"^^xsd:string ; + owl:hasValue "0008715"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008715"^^xsd:string ; + owl:hasValue "COG2134"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -195116,11 +195116,11 @@ bo:10934 a bo:1122 , sybio:Protein , owl:NamedIndividual ; rdfs:label "GO:0016783"@en , "sulfurtransferase"@en , "tRNA sulfurtransferase"@en , "sulphurtransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016783"^^xsd:string ; + owl:hasValue "2.8.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.1.-"^^xsd:string ; + owl:hasValue "GO:0016783"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -195478,11 +195478,11 @@ bo:18142 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E2.1.1.152"@en , "COBF"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2243"^^xsd:string ; + owl:hasValue "0043819"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043819"^^xsd:string ; + owl:hasValue "COG2243"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -195655,11 +195655,11 @@ bo:5535 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0016746"@en , "transferase activity, transferring acyl groups"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016746"^^xsd:string ; + owl:hasValue "2.3.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.-.-"^^xsd:string ; + owl:hasValue "GO:0016746"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -195998,11 +195998,11 @@ bo:11814 a owl:NamedIndividual , owl:Class , sybio:Pathway ; rdfs:label "GO:0048046"@en , "apoplast"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0048046"^^xsd:string ; + owl:hasValue "Apoplast"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Apoplast"^^xsd:string ; + owl:hasValue "GO:0048046"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -196378,7 +196378,7 @@ bo:12731 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.13.11.32"^^xsd:string ; + owl:hasValue "2-NITROPROPANE-DIOXYGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -196386,7 +196386,7 @@ bo:12731 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2-NITROPROPANE-DIOXYGENASE-RXN"^^xsd:string ; + owl:hasValue "1.13.11.32"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -196430,87 +196430,87 @@ bo:25144 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "transmembrane transport"@en , "GO:0055085"@en ; rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507409 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "597318 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517411 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "600589 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592495 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "469743 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598117 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "382556 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507410 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "448617 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "382556 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "487452 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602479 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "547954 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581599 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "382551 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487453 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "568396 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448618 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "599664 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568397 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "557784 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599665 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "542238 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592494 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "552198 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531149 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "526284 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585792 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "568397 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597317 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "448618 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "382551 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "469744 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599664 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "536520 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600589 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "487453 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536519 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "581599 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568396 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "600590 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -196518,91 +196518,91 @@ bo:25144 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469744 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "598117 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557783 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "602479 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517410 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "507410 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552197 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "GO:0055085"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448617 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "592494 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542238 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "599665 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536520 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "581598 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552198 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "597317 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602478 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "585791 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542237 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "517410 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557784 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "585792 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547954 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "602478 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487452 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "598116 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597318 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "552197 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600590 \"Transmembrane transport of small molecules\""^^xsd:string ; + owl:hasValue "536519 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0055085"^^xsd:string ; + owl:hasValue "517411 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531148 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "507409 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526284 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "557783 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581598 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "531149 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469743 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "531148 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598116 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "592495 \"Transmembrane transport of small molecules\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585791 \"ABC-family proteins mediated transport\""^^xsd:string ; + owl:hasValue "542237 \"ABC-family proteins mediated transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -197179,99 +197179,99 @@ bo:16898 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "heme anabolism"@en , "heme biosynthetic process"@en , "GO:0006783"@en , "heme biosynthesis"@en , "haem biosynthesis"@en , "heme formation"@en , "haem biosynthetic process"@en , "heme synthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597338 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "600604 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517535 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "547658 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568460 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "189451 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542318 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "517535 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526731 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "HEMESYN2-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "189451 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "602506 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552243 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "526731 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HEMESYN2-PWY"^^xsd:string ; + owl:hasValue "598143 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536592 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "557862 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448780 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "469895 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602506 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "552243 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600604 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "487602 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531222 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "592580 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547658 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "595394 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507557 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "531222 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595394 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "GO:0006783"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592580 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "542318 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006783"^^xsd:string ; + owl:hasValue "581671 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581671 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "507557 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487602 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "597338 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599697 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "568460 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469895 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "448780 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598143 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "536592 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557862 \"Heme biosynthesis\""^^xsd:string ; + owl:hasValue "599697 \"Heme biosynthesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -197668,11 +197668,11 @@ bo:9928 a owl:NamedIndividual , sybio:Protein , bo:385 ; rdfs:label "cytosol"@en , "GO:0005829"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005829"^^xsd:string ; + owl:hasValue "Cytosol"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cytosol"^^xsd:string ; + owl:hasValue "GO:0005829"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -198675,7 +198675,7 @@ bo:24993 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "4-diphosphocytidyl-2C-methyl-D-erythritol synthase"@en , "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase"@en , "MEP cytidylyltransferase"@en , "4-diphosphocytidyl-2-C-methyl-D-erythritol synthase"@en , "CTP:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase"@en , "MCT"@en , "GO:0050518"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050518"^^xsd:string ; + owl:hasValue "2.7.7.60-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -198683,28 +198683,16 @@ bo:24993 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.60"^^xsd:string ; + owl:hasValue "GO:0050518"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.60-RXN"^^xsd:string ; + owl:hasValue "2.7.7.60"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:22096 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.1.3.7"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.3.7"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "22096"@en . - bo:17829 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]"@en ; rdfs:label "E1.2.1.46"@en ; @@ -198715,17 +198703,17 @@ bo:17829 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00148"@en ; tawny:name "17829"@en . -bo:22184 a sybio:EC , owl:NamedIndividual , owl:Class ; +bo:22096 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "4.3.1.12"@en ; + rdfs:label "2.1.3.7"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.1.12"^^xsd:string ; + owl:hasValue "2.1.3.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "22184"@en . + tawny:name "22096"@en . bo:17917 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "nicotinamide riboside kinase 1 [EC:2.7.1.-]"@en ; @@ -198736,6 +198724,18 @@ bo:17917 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10524"@en ; tawny:name "17917"@en . +bo:22184 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "4.3.1.12"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "4.3.1.12"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "22184"@en . + bo:22272 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "unclear reaction - irreversible"@en ; rdfs:label "C03277 <=> C05130 + C00011"@en , "cpd:C03277 => cpd:C03277"@en ; @@ -198919,11 +198919,11 @@ bo:18922 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "ALG9"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT22"^^xsd:string ; + owl:hasValue "0004584"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004584"^^xsd:string ; + owl:hasValue "GT22"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -199412,11 +199412,11 @@ bo:18709 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "B3GALT4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "0047915"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047915"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -199710,11 +199710,11 @@ bo:19714 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "6-pyruvoyltetrahydropterin synthase"@en , "6-pyruvoyl tetrahydrobiopterin synthase"@en , "2-dihydroxy-3-triphosphooxypropyl]-7 8-dihydroxypteridine triphosphate-lyase"@en , "PTPS"@en , "2-dihydroxy-3-triphosphooxypropyl]-7 8-dihydroxypteridine triphosphate lyase"@en , "GO:0003874"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.3.12-RXN"^^xsd:string ; + owl:hasValue "GO:0003874"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003874"^^xsd:string ; + owl:hasValue "4.2.3.12-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -199736,24 +199736,24 @@ bo:19802 a owl:NamedIndividual , sybio:Enzyme ; owl:sameAs bo:26453 . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: O-succinyl-L-homoserine + L-cysteine = cystathionine + succinate."@en ; rdfs:label "cystathionine g-synthase"@en , "cystathionine synthase"@en , "homoserine O-transsuccinylase"@en , "O-succinyl-L-homoserine succinate-lyase"@en , "CTT gamma synthase"@en , "O-succinylhomoserine synthase"@en , "O-succinylhomoserine"@en , "cystathionine synthetase"@en , "cystathionine gamma synthase"@en , "GO:0003962"@en , "homoserine transsuccinylase"@en , "cystathionine gamma-synthase"@en , "O4-succinyl-L-homoserine:L-cysteine"@en , "O-succinyl-L-homoserine"@en , "O-succinylhomoserine synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.48"^^xsd:string ; + owl:hasValue "O-SUCCHOMOSERLYASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003962"^^xsd:string ; + owl:hasValue "GO:0000505"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000505"^^xsd:string ; + owl:hasValue "GO:0003962"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "O-SUCCHOMOSERLYASE-RXN"^^xsd:string ; + owl:hasValue "2.5.1.48"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -199884,11 +199884,11 @@ bo:10614 a owl:NamedIndividual , bo:799 , sybio:Protein , owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.5-RXN"^^xsd:string ; + owl:hasValue "3.6.3.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.5"^^xsd:string ; + owl:hasValue "3.6.3.5-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -200062,15 +200062,15 @@ bo:32964 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.1.9"^^xsd:string ; + owl:hasValue "GO:0004791"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004791"^^xsd:string ; + owl:hasValue "THIOREDOXIN-REDUCT-NADPH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THIOREDOXIN-REDUCT-NADPH-RXN"^^xsd:string ; + owl:hasValue "1.8.1.9"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -201504,16 +201504,6 @@ bo:21959 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "21959"@en . -bo:7100 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Auxin efflux carrier"@en ; - rdfs:label "A3FMH2"@en ; - sybio:accession "A3FMH2"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:locatedIn ; - sybio:taxId "1423"@en ; - tawny:name "7100"@en . - bo:1375 a owl:Class ; rdfs:label "COG4955"@en ; rdfs:subClassOf bo:176 , sybio:COG ; @@ -201525,6 +201515,16 @@ bo:1375 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1375"@en . +bo:7100 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Auxin efflux carrier"@en ; + rdfs:label "A3FMH2"@en ; + sybio:accession "A3FMH2"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:locatedIn ; + sybio:taxId "1423"@en ; + tawny:name "7100"@en . + bo:1463 a owl:Class ; rdfs:label "COG0295"@en ; rdfs:subClassOf bo:185 , sybio:COG ; @@ -201972,17 +201972,6 @@ bo:17583 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08686"@en ; tawny:name "17583"@en . -bo:1426 a owl:Class ; - rdfs:label "COG1722"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1722"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1426"@en . - bo:29166 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00550"@en ; rdfs:label "mfd"@en , "BSU00550"@en ; @@ -202008,6 +201997,17 @@ bo:29166 a sybio:CDS , owl:NamedIndividual ; "212.0"@en ; tawny:name "29166"@en . +bo:1426 a owl:Class ; + rdfs:label "COG1722"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1722"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1426"@en . + bo:694 a owl:Class ; rdfs:label "COG0210"@en ; rdfs:subClassOf bo:170 , sybio:COG ; @@ -202464,6 +202464,14 @@ bo:657 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "657"@en . +bo:5981 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "atp"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32559 , bo:32562 , bo:32660 , bo:32558 , bo:31761 , bo:32561 , bo:32487 , bo:32560 , bo:32563 ; + sybio:operonGenes "atpI,atpB,atpE,atpF,atpH,atpA,atpG,atpD,atpC"@en ; + tawny:name "5981"@en . + bo:17634 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "benzylsuccinate CoA-transferase BbsF subunit [EC:2.8.3.15]"@en ; rdfs:label "BBSF"@en , "E2.8.3.15F"@en ; @@ -202474,14 +202482,6 @@ bo:17634 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07543+K07544"@en ; tawny:name "17634"@en . -bo:5981 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "atp"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32559 , bo:32562 , bo:32660 , bo:32558 , bo:31761 , bo:32561 , bo:32487 , bo:32560 , bo:32563 ; - sybio:operonGenes "atpI,atpB,atpE,atpF,atpH,atpA,atpG,atpD,atpC"@en ; - tawny:name "5981"@en . - bo:29217 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU01480"@en ; rdfs:label "ybaH"@en , "BSU01480"@en , "truA"@en ; @@ -202804,6 +202804,21 @@ bo:11996 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06376"@en ; tawny:name "11996"@en . +bo:2218 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU20530;hypothetical protein; phage SPbeta"@en ; + rdfs:label "BSU20530"@en , "YoqS"@en ; + sybio:AA "MYRKIFDMVNGSEEQSKITDWLYKLMIEDENSLYKIDIKVSKRRISEQGDIYREEGEYIENADLQTLPIGTKSFVQNGCWKGEIVSNEKKHLYMPQIGEMREIKVGSTGLNIEIE"@en ; + sybio:accession "BSU20530"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:29987 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "13454.8"^^xsd:string ; + sybio:pI "4.978859"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2218"@en . + bo:18375 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "chondroitin 4-sulfotransferase 11 [EC:2.8.2.5]"@en ; rdfs:label "CHST11"@en ; @@ -202820,39 +202835,24 @@ bo:18375 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "3-oxoacid CoA-transferase"@en , "3-ketoacid CoA-transferase"@en , "3-oxoacid coenzyme A-transferase"@en , "3-ketoacid coenzyme A transferase"@en , "succinyl-CoA:3-ketoacid-CoA transferase"@en , "3-oxo-CoA transferase"@en , "succinyl-CoA:3-oxo-acid CoA-transferase"@en , "acetoacetate succinyl-CoA transferase"@en , "3-oxoacid CoA dehydrogenase"@en , "acetoacetyl coenzyme A-succinic thiophorase"@en , "succinyl-CoA transferase"@en , "succinyl coenzyme A-acetoacetyl coenzyme A-transferase"@en , "GO:0008260"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.3.5"^^xsd:string ; + owl:hasValue "GO:0008260"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008260"^^xsd:string ; + owl:hasValue "2.8.3.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-OXOACID-COA-TRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "23643 \"3-oxoacid CoA-transferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "23643 \"3-oxoacid CoA-transferase activity\""^^xsd:string ; + owl:hasValue "3-OXOACID-COA-TRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2218 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU20530;hypothetical protein; phage SPbeta"@en ; - rdfs:label "BSU20530"@en , "YoqS"@en ; - sybio:AA "MYRKIFDMVNGSEEQSKITDWLYKLMIEDENSLYKIDIKVSKRRISEQGDIYREEGEYIENADLQTLPIGTKSFVQNGCWKGEIVSNEKKHLYMPQIGEMREIKVGSTGLNIEIE"@en ; - sybio:accession "BSU20530"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:29987 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "13454.8"^^xsd:string ; - sybio:pI "4.978859"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2218"@en . - bo:30884 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU06610"@en ; rdfs:label "yerF"@en , "BSU06610"@en , "pcrA"@en ; @@ -205111,7 +205111,7 @@ bo:20847 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "nucleoside triphosphate phosphohydrolase"@en , "NTPase"@en , "apyrase"@en , "nucleoside triphosphate hydrolase"@en , "unspecific diphosphate phosphohydrolase"@en , "nucleoside-triphosphatase"@en , "nucleoside-5-triphosphate phosphohydrolase"@en , "nucleoside triphosphatase"@en , "nucleoside 5-triphosphatase"@en , "GO:0017111"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.15"^^xsd:string ; + owl:hasValue "NUCLEOSIDE-TRIPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -205119,7 +205119,7 @@ bo:20847 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NUCLEOSIDE-TRIPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "3.6.1.15"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -205327,11 +205327,11 @@ bo:14812 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.1.1.57"@en , "UXUB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0246"^^xsd:string ; + owl:hasValue "0008866"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008866"^^xsd:string ; + owl:hasValue "COG0246"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -205893,24 +205893,24 @@ bo:1143 a owl:Class ; tawny:name "1143"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: ATP + acetate = ADP + acetyl phosphate."@en ; rdfs:label "AckA"@en , "AK"@en , "ATP:acetate phosphotransferase"@en , "acetic kinase"@en , "acetokinase"@en , "GO:0008776"@en , "acetate kinase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETATEKIN-RXN"^^xsd:string ; + owl:hasValue "e0031"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008776"^^xsd:string ; + owl:hasValue "2.7.2.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0031"^^xsd:string ; + owl:hasValue "GO:0008776"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.1"^^xsd:string ; + owl:hasValue "ACETATEKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -205933,11 +205933,11 @@ bo:18979 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "SIAT1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT29"^^xsd:string ; + owl:hasValue "0003835"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003835"^^xsd:string ; + owl:hasValue "GT29"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -205966,11 +205966,11 @@ bo:1231 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008864"^^xsd:string ; + owl:hasValue "FORMYLTHFDEFORMYL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FORMYLTHFDEFORMYL-RXN"^^xsd:string ; + owl:hasValue "GO:0008864"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -206059,16 +206059,6 @@ bo:16346 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16434 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovH"@en ; - rdfs:label "NOVH"@en ; - sybio:accession "Q9L9G0"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16433 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12701"@en ; - tawny:name "16434"@en . - bo:4781 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yhbIJ-yhcABCDEFGHI_terminator"@en ; sybio:NA "TTGCAAACTAATAAAAAAAGCTGTTTTGCTTATGCAAAACAGCTTTTTTGTCAAAATA"^^xsd:string ; @@ -206081,6 +206071,16 @@ bo:4781 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4780 ; tawny:name "4781"@en . +bo:16434 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovH"@en ; + rdfs:label "NOVH"@en ; + sybio:accession "Q9L9G0"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16433 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12701"@en ; + tawny:name "16434"@en . + bo:28017 a sybio:RBS , owl:NamedIndividual ; rdfs:label "yveA_RBS"@en ; sybio:NA "GGTTTCAAAGGAGGAAGCGA"^^xsd:string ; @@ -206097,63 +206097,63 @@ bo:28017 a sybio:RBS , owl:NamedIndividual ; rdfs:label "passive proton transport down the electrochemical gradient"@en , "hydrogen ion transport"@en , "proton transport"@en , "GO:0015992"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470387 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "166187 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568683 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "568763 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449089 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "GO:0015992"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581886 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "470387 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568763 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "508026 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470201 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "488064 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581966 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "487888 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508026 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "167827 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "167827 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "581966 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015992"^^xsd:string ; + owl:hasValue "449089 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449267 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "507859 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488064 \"The proton buffering model\""^^xsd:string ; + owl:hasValue "581886 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487888 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "470201 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "166187 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "568683 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507859 \"Mitochondrial Uncoupling Proteins\""^^xsd:string ; + owl:hasValue "449267 \"The proton buffering model\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -206164,11 +206164,11 @@ bo:16522 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "BAAT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047963"^^xsd:string ; + owl:hasValue "0016290"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016290"^^xsd:string ; + owl:hasValue "0047963"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -206678,7 +206678,7 @@ bo:4568 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "endo-N-acetyl-beta-D-glucosaminidase"@en , "mannosyl-glycoprotein endo-beta-N-acetylglucosamidase"@en , "endoglycosidase H"@en , "endo-N-acetyl-beta-glucosaminidase"@en , "endo-beta-N-acetylglucosaminidase L"@en , "di-N-acetylchitobiosyl beta-N-acetylglucosaminidase"@en , "endoglycosidase S"@en , "endo-beta-N-acetylglucosaminidase D"@en , "endo-beta-acetylglucosaminidase"@en , "endo-beta-N-acetylglucosaminidase"@en , "endo-beta-N-acetylglucosaminidase H"@en , "1 4-N-acetyl-beta-glucosaminohydrolase"@en , "endo-beta-N-acetylglucosaminidase F"@en , "GO:0033925"@en , "mannosyl-glycoprotein 1 4-N-acetamidodeoxy-beta-D-glycohydrolase"@en , "N N'-diacetylchitobiosyl beta-N-acetylglucosaminidase"@en , "activity"@en , "mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0033925"^^xsd:string ; + owl:hasValue "3.2.1.96-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -206686,7 +206686,7 @@ bo:4568 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.96-RXN"^^xsd:string ; + owl:hasValue "GO:0033925"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -206697,11 +206697,11 @@ bo:16309 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E1.13.11.3B"@en , "PCAH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3485"^^xsd:string ; + owl:hasValue "0018578"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018578"^^xsd:string ; + owl:hasValue "COG3485"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -207066,11 +207066,11 @@ bo:513 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047343"^^xsd:string ; + owl:hasValue "2.7.7.33"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.33"^^xsd:string ; + owl:hasValue "GO:0047343"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -207508,11 +207508,11 @@ bo:5536 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.-"^^xsd:string ; + owl:hasValue "GO:0016747"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016747"^^xsd:string ; + owl:hasValue "2.3.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -207536,11 +207536,11 @@ bo:5624 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "other carbon-oxygen lyase"@en , "GO:0016835"@en , "carbon-oxygen lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.-.-"^^xsd:string ; + owl:hasValue "GO:0016835"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016835"^^xsd:string ; + owl:hasValue "4.2.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -207654,11 +207654,11 @@ bo:19060 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MSBB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1560"^^xsd:string ; + owl:hasValue "0008415"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008415"^^xsd:string ; + owl:hasValue "COG1560"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -207839,11 +207839,11 @@ bo:18106 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CHLM"@en , "E2.1.1.11"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0500"^^xsd:string ; + owl:hasValue "0046406"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046406"^^xsd:string ; + owl:hasValue "COG0500"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -207969,11 +207969,11 @@ bo:24228 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "polypeptide deformylase"@en , "GO:0042586"@en , "peptide deformylase"@en , "PDF"@en , "formyl-L-methionyl peptide amidohydrolase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.88"^^xsd:string ; + owl:hasValue "GO:0042586"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042586"^^xsd:string ; + owl:hasValue "3.5.1.88"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -208013,11 +208013,11 @@ bo:24404 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "enzyme transport"@en , "GO:0015031"@en , "protein transport"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015031"^^xsd:string ; + owl:hasValue "GO:0015831"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015831"^^xsd:string ; + owl:hasValue "GO:0015031"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -209147,19 +209147,19 @@ bo:13612 a sybio:Compound , owl:NamedIndividual ; rdfs:label "DHOase"@en , "dihydroorotase"@en , "dihydroorotate hydrolase"@en , "carbamoylaspartic dehydrase"@en , "GO:0004151"@en , "amidohydrolase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.3"^^xsd:string ; + owl:hasValue "8410 \"dihydroorotase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIHYDROOROT-RXN"^^xsd:string ; + owl:hasValue "GO:0004151"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004151"^^xsd:string ; + owl:hasValue "3.5.2.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8410 \"dihydroorotase activity\""^^xsd:string ; + owl:hasValue "DIHYDROOROT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -209401,11 +209401,11 @@ bo:17992 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.1.1.86F"@en , "MTRF"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4218"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4218"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -209741,11 +209741,11 @@ bo:17779 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CDHE"@en , "E1.2.99.2G"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1456"^^xsd:string ; + owl:hasValue "0018492"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018492"^^xsd:string ; + owl:hasValue "COG1456"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -210001,55 +210001,55 @@ bo:3493 a owl:NamedIndividual , sybio:Operator , sybio:Posit rdfs:label "GO:0045087"@en , "nonspecific immune response"@en , "innate immune response"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536848 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "531464 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517859 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "536848 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0002226"^^xsd:string ; + owl:hasValue "547920 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531464 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "542476 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448672 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "507465 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507465 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "469811 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Innate_immune_system"^^xsd:string ; + owl:hasValue "448672 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469811 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "487494 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547920 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "GO:0045087"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045087"^^xsd:string ; + owl:hasValue "168249 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542476 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "517859 \"Innate Immunity Signaling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487494 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "Innate_immune_system"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "168249 \"Innate Immunity Signaling\""^^xsd:string ; + owl:hasValue "GO:0002226"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -210306,6 +210306,16 @@ bo:22097 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11599 ; tawny:name "22097"@en . +bo:17918 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "acyl carrier protein phosphodiesterase [EC:3.1.4.14]"@en ; + rdfs:label "ACPH"@en , "E3.1.4.14"@en ; + sybio:accession "COG3124"^^xsd:string , "0008770"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17919 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08682"@en ; + tawny:name "17918"@en . + bo:22185 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "orphan"@en ; rdfs:label "trans-4-Hydroxy-L-proline"@en , "NAD+ 5-oxidoreductase"@en , "C01157 + C00003 <=> C04281 + C00004 + C00080"@en , " => "@en ; @@ -210318,16 +210328,6 @@ bo:22185 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:22105 , bo:22106 ; tawny:name "22185"@en . -bo:17918 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "acyl carrier protein phosphodiesterase [EC:3.1.4.14]"@en ; - rdfs:label "ACPH"@en , "E3.1.4.14"@en ; - sybio:accession "COG3124"^^xsd:string , "0008770"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17919 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08682"@en ; - tawny:name "17918"@en . - bo:22273 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "5-Amino-2-oxopentanoate"@en , "2-oxoglutarate aminotransferase"@en , "cpd:C01100 <=> cpd:C01100"@en , "C01100 + C00026 <=> C01267 + C00025"@en ; @@ -212293,11 +212293,11 @@ bo:14869 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "FUCA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0235"^^xsd:string ; + owl:hasValue "0008738"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008738"^^xsd:string ; + owl:hasValue "COG0235"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -212604,10 +212604,6 @@ bo:15698 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a fatty acid anion."@en ; rdfs:label "amano AP"@en , "heparin releasable hepatic lipase"@en , "GA 56"@en , "tributyrin esterase"@en , "tween hydrolase"@en , "GO:0004806"@en , "steapsin"@en , "butyrinase"@en , "salt-resistant post-heparin lipase"@en , "cacordase"@en , "takedo 1969-4-9"@en , "hepatic lipase"@en , "lipazin"@en , "capalase L"@en , "amno N-AP"@en , "triolein hydrolase"@en , "amano P"@en , "amano B"@en , "liver lipase"@en , "glycerol ester hydrolase"@en , "glycerol-ester hydrolase"@en , "amano CES"@en , "tween-hydrolyzing esterase"@en , "post-heparin plasma protamine-resistant lipase"@en , "triacylglycerol acylhydrolase"@en , "hepatic monoacylglycerol acyltransferase"@en , "tributyrase"@en , "GEH"@en , "tributyrinase"@en , "amano CE"@en , "triglyceridase"@en , "meito MY 30"@en , "triglyceride lipase"@en , "tweenase"@en , "meito sangyo OF lipase"@en , "triglyceride hydrolase"@en , "triacetinase"@en , "PPL"@en , "tweenesterase"@en , "triacylglycerol lipase"@en , "triacylglycerol ester hydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15058 \"triacylglycerol lipase activity\""^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "TRIACYLGLYCEROL-LIPASE-RXN"^^xsd:string ; owl:onProperty sybio:accession @@ -212620,6 +212616,10 @@ bo:15698 a sybio:KOGE , owl:NamedIndividual ; owl:hasValue "GO:0004806"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "15058 \"triacylglycerol lipase activity\""^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -212701,11 +212701,11 @@ bo:16792 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "GNE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009384"^^xsd:string ; + owl:hasValue "0008761"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008761"^^xsd:string ; + owl:hasValue "0009384"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -212981,16 +212981,6 @@ bo:7013 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "7013"@en . -bo:7101 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Beta-glucanase"@en ; - rdfs:label "A4GRK5"@en ; - sybio:accession "A4GRK5"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:taxId "1423"@en ; - tawny:name "7101"@en . - bo:1376 a owl:Class ; rdfs:label "COG3601"@en ; rdfs:subClassOf bo:176 , sybio:COG ; @@ -213002,6 +212992,16 @@ bo:1376 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1376"@en . +bo:7101 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Beta-glucanase"@en ; + rdfs:label "A4GRK5"@en ; + sybio:accession "A4GRK5"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:taxId "1423"@en ; + tawny:name "7101"@en . + bo:1464 a owl:Class ; rdfs:label "COG0818"@en ; rdfs:subClassOf bo:189 , sybio:COG ; @@ -213175,15 +213175,11 @@ bo:16579 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "protein modification process"@en , "process resulting in protein modification"@en , "protein tagging"@en , "GO:0006464"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592394 \"Post-translational protein modification\""^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552404 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "531060 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448468 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "598181 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -213199,15 +213195,15 @@ bo:16579 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557675 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "595284 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568295 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "448468 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595284 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "GO:0006464"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -213215,23 +213211,23 @@ bo:16579 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531060 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "597401 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "163841 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "547504 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542137 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "469598 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598181 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "542137 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469598 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "163841 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -213239,23 +213235,27 @@ bo:16579 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597401 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "526163 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006464"^^xsd:string ; + owl:hasValue "592394 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526163 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "536442 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536442 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "552404 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547504 \"Post-translational protein modification\""^^xsd:string ; + owl:hasValue "557675 \"Post-translational protein modification\""^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "568295 \"Post-translational protein modification\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -213961,7 +213961,7 @@ bo:2168 a sybio:Protein , owl:NamedIndividual ; rdfs:label "GO:0019104"@en , "DNA glycosylase"@en , "endonuclease VIII"@en , "DNA N-glycosylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.-"^^xsd:string ; + owl:hasValue "7370 \"DNA N-glycosylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -213969,11 +213969,11 @@ bo:2168 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7370 \"DNA N-glycosylase activity\""^^xsd:string ; + owl:hasValue "GO:0008578"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008578"^^xsd:string ; + owl:hasValue "3.2.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -214363,11 +214363,11 @@ bo:18288 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "GO:0008173"@en , "RNA methyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008173"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008173"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -214563,11 +214563,11 @@ bo:18640 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0047238"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047238"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -215203,11 +215203,11 @@ bo:19168 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P50164"^^xsd:string ; + owl:hasValue "0050358"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050358"^^xsd:string ; + owl:hasValue "P50164"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -215738,6 +215738,25 @@ bo:26295 a owl:NamedIndividual , bo:415 , bo:414 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26295"@en . +bo:26383 a bo:1124 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Malonyl CoA-acyl carrier protein transacylase;derived protein"@en , "BSU15900;malonyl CoA:acyl carrier protein transacylase"@en ; + rdfs:label "YlpE"@en , "BSU15900"@en , "fabD"@en , "FabD"@en ; + sybio:AA "MSKIAFLFPGQGSQFIGMGKELYEQVPAAKRLFDEADETLETKLSSLIFEGDAEELTLTYNAQPALLTTSIAVLEKFKESGITPDFTAGHSLGEYSALVAAGALSFKDAVYTVRKRGEFMNEAVPAGEGAMAAILGMDAEALKQVTDKVTEEGNLVQLANLNCPGQIVISGTAKGVELASELAKENGAKRAIPLEVSGPFHSELMKPAAEKLKEVLDACDIKDADVPVISNVSADVMTEKADIKEKLIEQLYSPVRFEESINKLIAEGVTTFIEIGPGKVLSGLVKKVNRRLKTIAVSDPETIELAIQTLKEENDNA"@en ; + sybio:accession "938488"^^xsd:string , "16078653"^^xsd:string , "P71019"^^xsd:string , "BSU15900"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32651 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "34033.59"^^xsd:string ; + sybio:pI "4.712791"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26786 , bo:9400 , bo:26338 , bo:9394 , bo:9329 , bo:26604 , bo:26510 , bo:26605 , bo:26511 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26383"@en . + bo:11073 a owl:NamedIndividual , bo:1784 , sybio:Protein ; rdfs:comment "BSU35380;assembly factor of the flagellum"@en , "Flagellar assembly factor fliW;"@en ; rdfs:label "fliW"@en , "BSU35380"@en , "YviF"@en , "FliW"@en ; @@ -215756,24 +215775,25 @@ bo:11073 a owl:NamedIndividual , bo:1784 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11073"@en . -bo:26383 a bo:1124 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Malonyl CoA-acyl carrier protein transacylase;derived protein"@en , "BSU15900;malonyl CoA:acyl carrier protein transacylase"@en ; - rdfs:label "YlpE"@en , "BSU15900"@en , "fabD"@en , "FabD"@en ; - sybio:AA "MSKIAFLFPGQGSQFIGMGKELYEQVPAAKRLFDEADETLETKLSSLIFEGDAEELTLTYNAQPALLTTSIAVLEKFKESGITPDFTAGHSLGEYSALVAAGALSFKDAVYTVRKRGEFMNEAVPAGEGAMAAILGMDAEALKQVTDKVTEEGNLVQLANLNCPGQIVISGTAKGVELASELAKENGAKRAIPLEVSGPFHSELMKPAAEKLKEVLDACDIKDADVPVISNVSADVMTEKADIKEKLIEQLYSPVRFEESINKLIAEGVTTFIEIGPGKVLSGLVKKVNRRLKTIAVSDPETIELAIQTLKEENDNA"@en ; - sybio:accession "938488"^^xsd:string , "16078653"^^xsd:string , "P71019"^^xsd:string , "BSU15900"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; +bo:26471 a owl:NamedIndividual , bo:1367 , sybio:Protein , bo:479 ; + rdfs:comment "BSU22830;NAD(P)H-dependent glycerol-3-phosphate dehydrogenase"@en , "Glycerol-3-phosphate dehydrogenase [NAD(P)+];derived protein"@en ; + rdfs:label "gpsA"@en , "GpsA"@en , "BSU22830"@en ; + sybio:AA "MKKVTMLGAGSWGTALALVLTDNGNEVCVWAHRADLIHQINELHENKDYLPNVKLSTSIKGTTDMKEAVSDADVIIVAVPTKAIREVLRQAVPFITKKAVFVHVSKGIEPDSLLRISEIMEIELPSDVRKDIVVLSGPSHAEEVGLRHPTTVTASSKSMRAAEEVQDLFINHNFRVYTNPDIIGVEIGGALKNIIALAAGITDGLGYGDNAKAALITRGLAEIARLGTKMGGNPLTFSGLTGVGDLIVTCTSVHSRNWRAGNLLGKGYKLEDVLEEMGMVVEGVRTTKAAYQLSKKYDVKMPITEALHQVLFNGQKVETAVESLMARGKTHEMEDLVNTFENQVK"@en ; + sybio:accession "BSU22830"^^xsd:string , "16079340"^^xsd:string , "P46919"^^xsd:string , "938989"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32651 ; + sybio:encodedBy bo:32889 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; + sybio:hasFunction , , , , , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "34033.59"^^xsd:string ; - sybio:pI "4.712791"^^xsd:string ; + sybio:locatedIn , ; + sybio:molecularWeight "37434.56"^^xsd:string ; + sybio:pI "6.239342"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26786 , bo:9400 , bo:26338 , bo:9394 , bo:9329 , bo:26604 , bo:26510 , bo:26605 , bo:26511 ; + sybio:relatedTo bo:9537 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "26383"@en . + tawny:name "26471"@en . bo:11161 a owl:NamedIndividual , bo:643 , sybio:Protein ; rdfs:comment "BSU38590;phosphotransferase system (PTS) lichenan-specific enzyme IIB component;"@en , "Lichenan-specific phosphotransferase enzyme IIB component"@en ; @@ -215795,26 +215815,6 @@ bo:11161 a owl:NamedIndividual , bo:643 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11161"@en . -bo:26471 a owl:NamedIndividual , bo:1367 , sybio:Protein , bo:479 ; - rdfs:comment "BSU22830;NAD(P)H-dependent glycerol-3-phosphate dehydrogenase"@en , "Glycerol-3-phosphate dehydrogenase [NAD(P)+];derived protein"@en ; - rdfs:label "gpsA"@en , "GpsA"@en , "BSU22830"@en ; - sybio:AA "MKKVTMLGAGSWGTALALVLTDNGNEVCVWAHRADLIHQINELHENKDYLPNVKLSTSIKGTTDMKEAVSDADVIIVAVPTKAIREVLRQAVPFITKKAVFVHVSKGIEPDSLLRISEIMEIELPSDVRKDIVVLSGPSHAEEVGLRHPTTVTASSKSMRAAEEVQDLFINHNFRVYTNPDIIGVEIGGALKNIIALAAGITDGLGYGDNAKAALITRGLAEIARLGTKMGGNPLTFSGLTGVGDLIVTCTSVHSRNWRAGNLLGKGYKLEDVLEEMGMVVEGVRTTKAAYQLSKKYDVKMPITEALHQVLFNGQKVETAVESLMARGKTHEMEDLVNTFENQVK"@en ; - sybio:accession "BSU22830"^^xsd:string , "16079340"^^xsd:string , "P46919"^^xsd:string , "938989"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32889 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , ; - sybio:molecularWeight "37434.56"^^xsd:string ; - sybio:pI "6.239342"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:9537 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26471"@en . - bo:19219 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "leucoanthocyanidin dioxygenase [EC:1.14.11.19]"@en ; rdfs:label "E1.14.11.19"@en ; @@ -215934,7 +215934,7 @@ bo:31904 a sybio:CDS , owl:NamedIndividual ; rdfs:label "YwfE"@en , "bacilysin synthetase"@en , "L-amino acid ligase"@en , "L-amino acid alpha-ligase"@en , "GO:0034026"@en , "L-amino-acid alpha-ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0034026"^^xsd:string ; + owl:hasValue "6.3.2.28"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -215942,7 +215942,7 @@ bo:31904 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.28"^^xsd:string ; + owl:hasValue "GO:0034026"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -216670,22 +216670,22 @@ bo:13808 a sybio:Compound , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate."@en ; - rdfs:label "phosphoglucose isomerase"@en , "oxoisomerase"@en , "glucose phosphate isomerase"@en , "hexose phosphate isomerase"@en , "phosphohexoisomerase"@en , "D-glucose-6-phosphate aldose-ketose-isomerase"@en , "phosphosaccharomutase"@en , "phosphohexose isomerase"@en , "phosphoglucoisomerase"@en , "GO:0004347"@en , "hexosephosphate isomerase"@en , "glucose-6-phosphate isomerase"@en , "hexose monophosphate isomerase"@en , "D-glucose-6-phosphate ketol-isomerase"@en , "phosphohexomutase"@en ; + rdfs:label "phosphoglucose isomerase"@en , "glucose phosphate isomerase"@en , "oxoisomerase"@en , "hexose phosphate isomerase"@en , "phosphohexoisomerase"@en , "D-glucose-6-phosphate aldose-ketose-isomerase"@en , "phosphosaccharomutase"@en , "phosphohexose isomerase"@en , "phosphoglucoisomerase"@en , "GO:0004347"@en , "hexosephosphate isomerase"@en , "glucose-6-phosphate isomerase"@en , "hexose monophosphate isomerase"@en , "D-glucose-6-phosphate ketol-isomerase"@en , "phosphohexomutase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.9"^^xsd:string ; + owl:hasValue "10472 \"glucose-6-phosphate isomerase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10472 \"glucose-6-phosphate isomerase activity\""^^xsd:string ; + owl:hasValue "GO:0004347"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PGLUCISOM-RXN"^^xsd:string ; + owl:hasValue "5.3.1.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004347"^^xsd:string ; + owl:hasValue "PGLUCISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -216723,10 +216723,6 @@ bo:2897 a sybio:Promoter , sybio:ConstitutiveSigAPromoter rdfs:comment "Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters."@en ; rdfs:label "ribonuclease H3"@en , "GO:0004523"@en , "ribonuclease H1"@en , "RNase H1"@en , "RNase H3"@en , "hybrid nuclease"@en , "endoribonuclease0 H"@en , "endoribonuclease H"@en , "calf thymus ribonuclease H"@en , "hybridase"@en , "RNase H"@en , "RNA*DNA hybrid ribonucleotidohydrolase"@en , "RNase H2"@en , "ribonuclease H2"@en , "ribonuclease H"@en , "hybrid ribonuclease"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.4"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "3.1.26.4-RXN"^^xsd:string ; owl:onProperty sybio:accession @@ -216736,13 +216732,17 @@ bo:2897 a sybio:Promoter , sybio:ConstitutiveSigAPromoter owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004523"^^xsd:string ; + owl:hasValue "3.1.26.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0004524"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0004523"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -216769,19 +216769,19 @@ sybio:locatedIn a owl:ObjectProperty . rdfs:label "phosphoenolpyruvate carboxykinase"@en , "PEP carboxykinase"@en , "phosphopyruvate carboxylase"@en , "PEPCK"@en , "GO:0004611"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.32-RXN"^^xsd:string ; + owl:hasValue "PEPCARBOXYKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.-"^^xsd:string ; + owl:hasValue "4.1.1.32-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PEPCARBOXYKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0004611"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004611"^^xsd:string ; + owl:hasValue "4.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -216835,11 +216835,11 @@ bo:20848 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "regulation of physiological process"@en , "regulation of biological process"@en , "GO:0050789"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050789"^^xsd:string ; + owl:hasValue "GO:0050791"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050791"^^xsd:string ; + owl:hasValue "GO:0050789"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -217406,23 +217406,6 @@ bo:22682 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22682"@en . -bo:3689 a owl:NamedIndividual , sybio:Operator , sybio:NegativelyRegulatedOperator ; - rdfs:comment "Negative"@en ; - rdfs:label "CtsR_clpE-P1"@en ; - sybio:NA "TTGGTCAAAGATAGTCAAATATTC"^^xsd:string ; - sybio:annotatedSequence "TTGGTCAAAGATAGTCAAATATTC"@en ; - sybio:begin "1437888"@en ; - sybio:boundBy bo:6855 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1437865"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2728 ; - sybio:partOf bo:27638 ; - sybio:pmid "10320580"^^xsd:string ; - sybio:regulationType "Negative"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3689"@en . - bo:9414 a owl:NamedIndividual , sybio:Protein , bo:398 ; rdfs:comment "transcriptional regulator (metals sensing ArsR-SmtB repressors family);BSU05330;"@en , "HTH-type transcriptional repressor aseR"@en ; rdfs:label "aseR"@en , "AseR"@en , "YdeT"@en , "BSU05330"@en ; @@ -217443,6 +217426,23 @@ bo:9414 a owl:NamedIndividual , sybio:Protein , bo:398 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9414"@en . +bo:3689 a owl:NamedIndividual , sybio:Operator , sybio:NegativelyRegulatedOperator ; + rdfs:comment "Negative"@en ; + rdfs:label "CtsR_clpE-P1"@en ; + sybio:NA "TTGGTCAAAGATAGTCAAATATTC"^^xsd:string ; + sybio:annotatedSequence "TTGGTCAAAGATAGTCAAATATTC"@en ; + sybio:begin "1437888"@en ; + sybio:boundBy bo:6855 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1437865"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2728 ; + sybio:partOf bo:27638 ; + sybio:pmid "10320580"^^xsd:string ; + sybio:regulationType "Negative"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3689"@en . + bo:22770 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "C00019 + C00331 <=> C00021 + C05644"@en , "S-Adenosyl-L-methionine"@en , "(indol-3-yl)pyruvate C-methyltransferase"@en , "cpd:C00331 => cpd:C00331"@en ; @@ -217588,11 +217588,11 @@ bo:1144 a owl:Class ; rdfs:label "beta-D-fructan fructohydrolase"@en , "exo-beta-D-fructosidase"@en , "fructanase"@en , "fructan exohydrolase"@en , "exo-beta-fructosidase"@en , "fructan b-fructosidase"@en , "GO:0051669"@en , "polysaccharide beta-fructofuranosidase"@en , "fructan beta-fructosidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.80"^^xsd:string ; + owl:hasValue "GO:0051669"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051669"^^xsd:string ; + owl:hasValue "3.2.1.80"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -217630,15 +217630,15 @@ bo:1232 a owl:Class ; rdfs:label "activity"@en , "ATP:D-fructose 6-phosphotransferase"@en , "D-fructokinase"@en , "fructokinase"@en , "GO:0008865"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008865"^^xsd:string ; + owl:hasValue "FRUCTOKINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FRUCTOKINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.4"^^xsd:string ; + owl:hasValue "GO:0008865"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -217699,7 +217699,7 @@ bo:29060 a sybio:CDS , owl:NamedIndividual ; rdfs:label "penicillin amidohydrolase"@en , "penicillin amidase"@en , "penicillin acylase"@en , "benzylpenicillin acylase"@en , "alpha-acylamino-beta-lactam acylhydrolase"@en , "ampicillin acylase"@en , "semacylase"@en , "GO:0008953"@en , "novozym 217"@en , "palmitoleoyl [acyl-carrier protein]-dependent acyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008953"^^xsd:string ; + owl:hasValue "3.5.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -217707,7 +217707,7 @@ bo:29060 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.11"^^xsd:string ; + owl:hasValue "GO:0008953"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -217762,75 +217762,75 @@ bo:16259 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "purine base metabolism"@en , "purine base metabolic process"@en , "purine metabolic process"@en , "purine metabolism"@en , "GO:0006144"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598082 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "507312 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448519 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "557714 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581532 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "568330 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547532 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "600558 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595303 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "73847 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592419 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "597276 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487361 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "536468 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517327 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "598082 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536468 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "517327 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507312 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "448519 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600558 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "592419 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585750 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "487361 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597276 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "552123 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73847 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "581532 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568330 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "547532 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557714 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "531095 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526209 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "469649 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542172 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "GO:0006144"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -217842,34 +217842,24 @@ bo:16259 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006144"^^xsd:string ; + owl:hasValue "526209 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469649 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "585750 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531095 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "542172 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552123 \"Purine metabolism\""^^xsd:string ; + owl:hasValue "595303 \"Purine metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16347 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]"@en ; - rdfs:label "ACMSD"@en , "E4.1.1.45"@en ; - sybio:accession "0001760"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16346 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03392"@en ; - tawny:name "16347"@en . - bo:4694 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yfjQ_terminator"@en ; sybio:NA "AATGAGGACAGCGAGCAGCTGTTCTTTTTTGTTGTAAGC"^^xsd:string ; @@ -217882,6 +217872,24 @@ bo:4694 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4693 ; tawny:name "4694"@en . +bo:16347 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]"@en ; + rdfs:label "ACMSD"@en , "E4.1.1.45"@en ; + sybio:accession "0001760"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16346 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03392"@en ; + tawny:name "16347"@en . + +bo:4782 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "cspB"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31143 ; + sybio:operonGenes "cspB"@en ; + tawny:name "4782"@en . + bo:16435 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "novobiocin biosynthesis protein NovH"@en ; rdfs:label "NOVH"@en ; @@ -217895,14 +217903,6 @@ bo:16435 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12701"@en ; tawny:name "16435"@en . -bo:4782 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "cspB"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31143 ; - sybio:operonGenes "cspB"@en ; - tawny:name "4782"@en . - bo:28018 a owl:NamedIndividual , sybio:Shim ; rdfs:label "yveA_RBS_upstream"@en ; sybio:NA "CT"^^xsd:string ; @@ -217913,6 +217913,14 @@ bo:28018 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28017 ; tawny:name "28018"@en . +bo:4870 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "sbcD-yirY-yisB"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31220 , bo:31015 , bo:31014 ; + sybio:operonGenes "sbcD,yirY,yisB"@en ; + tawny:name "4870"@en . + bo:16523 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]"@en ; rdfs:label "PHNW"@en ; @@ -217923,14 +217931,6 @@ bo:16523 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03430"@en ; tawny:name "16523"@en . -bo:4870 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "sbcD-yirY-yisB"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31220 , bo:31015 , bo:31014 ; - sybio:operonGenes "sbcD,yirY,yisB"@en ; - tawny:name "4870"@en . - bo:28106 a sybio:RBS , owl:NamedIndividual ; rdfs:label "yhcN_RBS"@en ; sybio:NA "GTGATAAAGGAGGAATTCAC"^^xsd:string ; @@ -218463,11 +218463,11 @@ bo:18181 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.3.3.5"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047705"^^xsd:string ; + owl:hasValue "COG2132"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2132"^^xsd:string ; + owl:hasValue "0047705"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -218898,22 +218898,6 @@ bo:30477 a owl:NamedIndividual , sybio:CDS ; "197.0"@en ; tawny:name "30477"@en . -bo:11677 a owl:Class , owl:NamedIndividual , sybio:Pathway ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00620.png"@en ; - rdfs:label "Pyruvate metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00620"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11584 , bo:11700 , bo:11561 , bo:11568 , bo:11592 , bo:11664 , bo:11693 , bo:11631 , bo:11714 , bo:11685 , bo:11689 , bo:11697 , bo:11695 ; - sybio:derivesFrom bo:11678 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00620"@en ; - tawny:name "11677"@en . - bo:26987 a sybio:Protein , owl:NamedIndividual , bo:193 , bo:261 ; rdfs:comment "GMP synthase [glutamine-hydrolyzing];derived protein"@en , "BSU06360;GMP synthetase;"@en ; rdfs:label "BSU06360"@en , "guaA"@en , "GuaA"@en ; @@ -218933,6 +218917,22 @@ bo:26987 a sybio:Protein , owl:NamedIndividual , bo:193 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26987"@en . +bo:11677 a owl:Class , owl:NamedIndividual , sybio:Pathway ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00620.png"@en ; + rdfs:label "Pyruvate metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00620"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11584 , bo:11700 , bo:11561 , bo:11568 , bo:11592 , bo:11664 , bo:11693 , bo:11631 , bo:11714 , bo:11685 , bo:11689 , bo:11697 , bo:11695 ; + sybio:derivesFrom bo:11678 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00620"@en ; + tawny:name "11677"@en . + bo:18056 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "light-independent protochlorophyllide reductase subunit B[EC:1.18.-.-]"@en ; rdfs:label "CHLB"@en ; @@ -219188,11 +219188,11 @@ bo:5625 a owl:NamedIndividual , sybio:Operon ; rdfs:label "GO:0016836"@en , "hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016836"^^xsd:string ; + owl:hasValue "4.2.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.-"^^xsd:string ; + owl:hasValue "GO:0016836"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -219622,11 +219622,11 @@ bo:24405 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0005993"@en , "mycose catabolism"@en , "trehalose breakdown"@en , "trehalose catabolism"@en , "mycose catabolic process"@en , "trehalose catabolic process"@en , "mykose catabolism"@en , "trehalose degradation"@en , "mykose catabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TREDEGLOW-PWY"^^xsd:string ; + owl:hasValue "GO:0005993"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005993"^^xsd:string ; + owl:hasValue "TREDEGLOW-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -219799,7 +219799,7 @@ bo:19024 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E2.4.1.226"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -219807,7 +219807,7 @@ bo:19024 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -220807,7 +220807,7 @@ bo:13613 a owl:NamedIndividual , sybio:Compound ; rdfs:label "dihydoorotic acid dehydrogenase"@en , "oxidoreductase"@en , "GO:0004152"@en , "dihydroorotate dehydrogenase"@en , "dihydroorotate:ubiquinone oxidoreductase"@en , "dehydrogenase"@en , "DHOdehase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004152"^^xsd:string ; + owl:hasValue "8412 \"dihydroorotate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -220815,7 +220815,7 @@ bo:13613 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8412 \"dihydroorotate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "GO:0004152"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -221331,11 +221331,11 @@ bo:15271 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "MAZG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1694"^^xsd:string ; + owl:hasValue "0047429"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047429"^^xsd:string ; + owl:hasValue "COG1694"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -221720,11 +221720,11 @@ bo:18697 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "ALG14"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004577"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "0004577"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -221763,11 +221763,11 @@ bo:18785 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.34"^^xsd:string ; + owl:hasValue "DIENOYLCOAREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIENOYLCOAREDUCT-RXN"^^xsd:string ; + owl:hasValue "1.3.1.34"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -221833,11 +221833,11 @@ bo:18961 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "MGAT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003830"^^xsd:string ; + owl:hasValue "GT17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT17"^^xsd:string ; + owl:hasValue "0003830"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -221931,6 +221931,16 @@ bo:22098 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:11788 ; tawny:name "22098"@en . +bo:17919 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "acyl carrier protein phosphodiesterase [EC:3.1.4.14]"@en ; + rdfs:label "E3.1.4.14"@en , "ACPH"@en ; + sybio:accession "0008770"^^xsd:string , "COG3124"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17918 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08682"@en ; + tawny:name "17919"@en . + bo:22186 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "2-oxo-acid aminotransferase"@en , "L-Ornithine"@en , "cpd:C00077 <=> cpd:C00077"@en , "C00077 + C00026 <=> C01165 + C00025"@en ; @@ -221943,16 +221953,6 @@ bo:22186 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:22187 , bo:22130 ; tawny:name "22186"@en . -bo:17919 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "acyl carrier protein phosphodiesterase [EC:3.1.4.14]"@en ; - rdfs:label "E3.1.4.14"@en , "ACPH"@en ; - sybio:accession "0008770"^^xsd:string , "COG3124"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17918 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K08682"@en ; - tawny:name "17919"@en . - bo:22274 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "three-step reaction - irreversible"@en ; rdfs:label "cpd:C00135 => cpd:C00135"@en , "L-histidine Nalpha-methyltransferase"@en , "S-adenosyl-L-methionine"@en , "C00135 + 3 C00019 + C00080 <=> C05575 + 3 C00021"@en ; @@ -222176,11 +222176,11 @@ bo:18836 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "D-serine ammonia-lyase"@en , "D-serine dehydratase"@en , "D-serine deaminase"@en , "D-serine hydrolase"@en , "D-hydroxy amino acid dehydratase"@en , "GO:0008721"@en , "D-serine dehydrase"@en , "D-hydroxyaminoacid dehydratase"@en , "D-serine hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.1.18"^^xsd:string ; + owl:hasValue "DSERDEAM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DSERDEAM-RXN"^^xsd:string ; + owl:hasValue "4.3.1.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -222195,11 +222195,11 @@ bo:15109 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "ACADM"@en , "E1.3.99.3"@en , "ACD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1960"^^xsd:string ; + owl:hasValue "0003995"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003995"^^xsd:string ; + owl:hasValue "COG1960"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -222335,18 +222335,6 @@ bo:22325 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11607 ; tawny:name "22325"@en . - - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; - rdfs:comment "Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.;"@en ; - rdfs:label "vitamin H binding"@en , "GO:0009374"@en , "vitamin B7 binding"@en , "biotin binding"@en ; - rdfs:subClassOf sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009374"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:19489 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "4.1.1.37"@en ; @@ -222359,6 +222347,18 @@ bo:19489 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19489"@en . + + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; + rdfs:comment "Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.;"@en ; + rdfs:label "vitamin H binding"@en , "GO:0009374"@en , "vitamin B7 binding"@en , "biotin binding"@en ; + rdfs:subClassOf sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0009374"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:31998 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU05760"@en ; rdfs:label "ydhH"@en , "BSU05760"@en ; @@ -222462,23 +222462,6 @@ bo:16026 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00603"@en ; tawny:name "16026"@en . -bo:16114 a owl:Class , sybio:KOEN , owl:NamedIndividual ; - rdfs:comment "homogentisate 1,2-dioxygenase [EC:1.13.11.5]"@en ; - rdfs:label "E1.13.11.5"@en , "HMGA"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3508"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004411"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00451"@en ; - tawny:name "16114"@en . - bo:19841 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "1.4.1.2"@en ; @@ -222520,6 +222503,35 @@ bo:10389 a sybio:Protein , bo:572 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10389"@en . +bo:16114 a owl:Class , sybio:KOEN , owl:NamedIndividual ; + rdfs:comment "homogentisate 1,2-dioxygenase [EC:1.13.11.5]"@en ; + rdfs:label "E1.13.11.5"@en , "HMGA"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG3508"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0004411"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00451"@en ; + tawny:name "16114"@en . + +bo:25787 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.2.3.14"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.3.14"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25787"@en . + bo:10477 a owl:NamedIndividual , bo:1615 , bo:915 , sybio:Protein ; rdfs:comment "Uncharacterized protein yusI"@en , "putative oxidoreductase with thioredoxin domain;BSU32810;"@en ; rdfs:label "yusI"@en , "YusI"@en , "BSU32810"@en ; @@ -222537,17 +222549,17 @@ bo:10477 a owl:NamedIndividual , bo:1615 , bo:915 , sybio:Pr sybio:taxId "[224308, 1423]"@en ; tawny:name "10477"@en . -bo:25787 a sybio:EC , owl:Class , owl:NamedIndividual ; +bo:25875 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.2.3.14"@en ; + rdfs:label "4.1.1.55"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.3.14"^^xsd:string ; + owl:hasValue "4.1.1.55"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25787"@en . + tawny:name "25875"@en . bo:10565 a bo:461 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Response regulator aspartate phosphatase B"@en , "BSU36690;response regulator aspartate phosphatase"@en ; @@ -222567,18 +222579,6 @@ bo:10565 a bo:461 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10565"@en . -bo:25875 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "4.1.1.55"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.55"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25875"@en . - bo:5291 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ypuA_terminator"@en ; sybio:NA "AAAAGCGCCGAAAAATCGGCGTTTCTTTTATTGCTT"^^xsd:string ; @@ -222589,6 +222589,18 @@ bo:5291 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5290 ; tawny:name "5291"@en . +bo:25963 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.1.1.115"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.1.1.115"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25963"@en . + bo:10653 a owl:NamedIndividual , bo:1792 , sybio:Protein ; rdfs:comment "BSU35840;putative transcriptional regulator;"@en , "Putative transcriptional regulator ywtF"@en ; rdfs:label "YwtF"@en , "ywtF"@en , "BSU35840"@en ; @@ -222608,18 +222620,6 @@ bo:10653 a owl:NamedIndividual , bo:1792 , sybio:Protein ; tawny:name "10653"@en ; owl:sameAs bo:6565 . -bo:25963 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.1.1.115"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.115"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25963"@en . - bo:17032 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "inositol-pentakisphosphate 2-kinase [EC:2.7.1.158]"@en ; rdfs:label "IPPK"@en ; @@ -222804,6 +222804,18 @@ bo:30194 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "30194"@en . + + a owl:Class ; + rdfs:comment "The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; + rdfs:label "GO:0015812"@en , "4-aminobutyrate transport"@en , "4-aminobutanoate transport"@en , "GABA transport"@en , "gamma-aminobutyric acid transport"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0015812"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:11394 a owl:NamedIndividual , bo:568 , sybio:Protein ; rdfs:comment "BSU04410;putative enzyme ; cupin family"@en , "Putative enzyme ; cupin family;"@en ; rdfs:label "YdbB"@en , "BSU04410"@en , "ydbB"@en ; @@ -222823,18 +222835,6 @@ bo:11394 a owl:NamedIndividual , bo:568 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11394"@en . - - a owl:Class ; - rdfs:comment "The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; - rdfs:label "GO:0015812"@en , "4-aminobutyrate transport"@en , "4-aminobutanoate transport"@en , "GABA transport"@en , "gamma-aminobutyric acid transport"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015812"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:30282 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26740"@en ; rdfs:label "yrdE"@en , "BSU26740"@en , "cypA"@en ; @@ -222860,6 +222860,39 @@ bo:30282 a owl:NamedIndividual , sybio:CDS ; "16.0"@en ; tawny:name "30282"@en . + + a owl:Class ; + rdfs:comment "The addition of a lipoyl group to an amino acid residue in a protein."@en ; + rdfs:label "protein lipoylation"@en , "GO:0009249"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0009249"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + +bo:26792 a bo:1149 , owl:NamedIndividual , sybio:Protein , bo:1828 ; + rdfs:comment "derived protein;ATP synthase subunit beta"@en , "ATP synthase (subunit beta, component F1);BSU36810"@en ; + rdfs:label "BSU36810"@en , "AtpD"@en , "atpD"@en ; + sybio:AA "MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKISQPAASENEVGIDLTLEVALHLGDDTVRTIAMASTDGVQRGMEAVDTGAPISVPVGDVTLGRVFNVLGENIDLNEPVPADAKKDPIHRQAPSFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLFYEMSDSGVINKTAMVFGQMNEPPGARMRVALTGLTMAEHFRDVQGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLTEMGIYPAVDPLASTSRALAPEIVGEEHYAVAREVQSTLQRYKELQDIIAILGMDELGEEDKLVVHRARRIQFFLSQNFHVAEQFTGQKGSYVPVKETVQGFKEILAGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV"@en ; + sybio:accession "P37809"^^xsd:string , "936992"^^xsd:string , "BSU36810"^^xsd:string , "16080734"^^xsd:string ; + sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32563 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:hasRole "1.4 : Membrane bioenergetics (electron transport chain and ATP synthase)"^^xsd:string ; + sybio:interactsWith bo:26791 , bo:9350 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , , , , ; + sybio:molecularWeight "51418.34"^^xsd:string ; + sybio:pI "4.80027"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26794 , bo:26793 , bo:26798 , bo:26797 , bo:26871 , bo:26796 , bo:26795 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26792"@en . + bo:11482 a owl:NamedIndividual , sybio:Protein , bo:534 ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator ytzE"@en , "BSU30020;putative transcriptional regulator (DeoR family)"@en ; rdfs:label "BSU30020"@en , "YtzE"@en , "ytzE"@en ; @@ -222881,39 +222914,6 @@ bo:11482 a owl:NamedIndividual , sybio:Protein , bo:534 ; tawny:name "11482"@en ; owl:sameAs bo:6685 . - - a owl:Class ; - rdfs:comment "The addition of a lipoyl group to an amino acid residue in a protein."@en ; - rdfs:label "protein lipoylation"@en , "GO:0009249"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009249"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - -bo:26792 a bo:1149 , owl:NamedIndividual , sybio:Protein , bo:1828 ; - rdfs:comment "derived protein;ATP synthase subunit beta"@en , "ATP synthase (subunit beta, component F1);BSU36810"@en ; - rdfs:label "BSU36810"@en , "AtpD"@en , "atpD"@en ; - sybio:AA "MKKGRVSQVLGPVVDVRFEDGHLPEIYNAIKISQPAASENEVGIDLTLEVALHLGDDTVRTIAMASTDGVQRGMEAVDTGAPISVPVGDVTLGRVFNVLGENIDLNEPVPADAKKDPIHRQAPSFDQLSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLFYEMSDSGVINKTAMVFGQMNEPPGARMRVALTGLTMAEHFRDVQGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLTEMGIYPAVDPLASTSRALAPEIVGEEHYAVAREVQSTLQRYKELQDIIAILGMDELGEEDKLVVHRARRIQFFLSQNFHVAEQFTGQKGSYVPVKETVQGFKEILAGKYDHLPEDAFRLVGRIEEVVEKAKEMGVEV"@en ; - sybio:accession "P37809"^^xsd:string , "936992"^^xsd:string , "BSU36810"^^xsd:string , "16080734"^^xsd:string ; - sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32563 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:hasRole "1.4 : Membrane bioenergetics (electron transport chain and ATP synthase)"^^xsd:string ; - sybio:interactsWith bo:26791 , bo:9350 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , , , , ; - sybio:molecularWeight "51418.34"^^xsd:string ; - sybio:pI "4.80027"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26794 , bo:26793 , bo:26798 , bo:26797 , bo:26871 , bo:26796 , bo:26795 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26792"@en . - bo:30370 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU30100"@en ; rdfs:label "BSU30100"@en , "yteT"@en ; @@ -222939,22 +222939,6 @@ bo:30370 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30370"@en . -bo:11570 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00130.png"@en ; - rdfs:label "Ubiquinone and other terpenoid-quinone biosynthesis"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00130"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11620 , bo:11726 ; - sybio:derivesFrom bo:11571 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00130"@en ; - tawny:name "11570"@en . - a sybio:CellularComponent , owl:NamedIndividual , owl:Class ; rdfs:comment "A multisubunit iron flavoprotein, which in yeast is composed of 2 alpha and 2 beta subunits. Catalyzes the reduction of hydrogen sulfide to sulfide."@en ; @@ -222986,6 +222970,22 @@ bo:26880 a bo:198 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26880"@en . +bo:11570 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00130.png"@en ; + rdfs:label "Ubiquinone and other terpenoid-quinone biosynthesis"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00130"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11620 , bo:11726 ; + sybio:derivesFrom bo:11571 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00130"@en ; + tawny:name "11570"@en . + a sybio:CellularComponent , owl:NamedIndividual , owl:Class ; rdfs:comment "One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring). Examples of this component are found in bacteria."@en ; @@ -223198,11 +223198,11 @@ bo:23117 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "acetyl-CoA:L-2 3 4 5-tetrahydrodipicolinate N2-acetyltransferase"@en , "3 4 5-tetrahydrodipicolinate-2 6-dicarboxylate N2-acetyltransferase"@en , "GO:0047200"@en , "3 4 5-tetrahydropyridine-2 6-dicarboxylate 2-N-acetyltransferase"@en , "tetrahydrodipicolinate N-acetyltransferase"@en , "tetrahydrodipicolinate:acetyl-CoA acetyltransferase"@en , "tetrahydrodipicolinate acetylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.89"^^xsd:string ; + owl:hasValue "GO:0047200"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047200"^^xsd:string ; + owl:hasValue "2.3.1.89"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -223366,6 +223366,24 @@ bo:30157 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "30157"@en . +bo:26667 a owl:NamedIndividual , bo:845 , sybio:Protein ; + rdfs:comment "BSU09880;putative dehydratase"@en , "Putative uncharacterized protein yhaR;Putative enoyl-CoA hydratase/isomerase yhaR;derived protein"@en ; + rdfs:label "YhaR"@en , "BSU09880"@en , "yhaR"@en ; + sybio:AA "MEFVQYACNGAVAEIILNRPDAHHALNEQMLSELKEAVEMAAASEALIVLLRGSGKGFSAGGDIRMMTSEHDPDQFKRLMDTIEAVTLNLYQMKKVTIAAIHGAAAGLGLSLALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTFAGDPAEGARPIIETLLASPLLAMIETKGIFQSLQIEELKKVLSLERSAQERMRRTKDHQEGIRAFLEKREPKFQA"@en ; + sybio:accession "Q799J7"^^xsd:string , "939767"^^xsd:string , "O07533"^^xsd:string , "255767227"^^xsd:string , "BSU09880"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32795 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "27609.01"^^xsd:string ; + sybio:pI "6.36602"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "26667"@en . + bo:11357 a owl:NamedIndividual , bo:364 , sybio:Protein ; rdfs:comment "nitrate transporter;BSU03330;"@en , "Nitrate transporter"@en ; rdfs:label "BSU03330"@en , "nasA"@en , "NasA"@en ; @@ -223385,24 +223403,6 @@ bo:11357 a owl:NamedIndividual , bo:364 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11357"@en . -bo:26667 a owl:NamedIndividual , bo:845 , sybio:Protein ; - rdfs:comment "BSU09880;putative dehydratase"@en , "Putative uncharacterized protein yhaR;Putative enoyl-CoA hydratase/isomerase yhaR;derived protein"@en ; - rdfs:label "YhaR"@en , "BSU09880"@en , "yhaR"@en ; - sybio:AA "MEFVQYACNGAVAEIILNRPDAHHALNEQMLSELKEAVEMAAASEALIVLLRGSGKGFSAGGDIRMMTSEHDPDQFKRLMDTIEAVTLNLYQMKKVTIAAIHGAAAGLGLSLALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTFAGDPAEGARPIIETLLASPLLAMIETKGIFQSLQIEELKKVLSLERSAQERMRRTKDHQEGIRAFLEKREPKFQA"@en ; - sybio:accession "Q799J7"^^xsd:string , "939767"^^xsd:string , "O07533"^^xsd:string , "255767227"^^xsd:string , "BSU09880"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32795 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "2.4 : Metabolism of lipids"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "27609.01"^^xsd:string ; - sybio:pI "6.36602"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "26667"@en . - bo:6083 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "rodA_terminator"@en ; sybio:NA "ATGCAGACAGCCTTTACAGAGGCTGTCTTTTTTTGTGCAGAG"^^xsd:string ; @@ -223664,11 +223664,11 @@ bo:14995 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "ULAF"@en , "SGAE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008742"^^xsd:string ; + owl:hasValue "COG0235"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0235"^^xsd:string ; + owl:hasValue "0008742"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -223899,11 +223899,11 @@ bo:32929 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0004844"@en , "uracil-DNA glycosylase"@en , "uracil DNA N-glycosylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15174 \"uracil DNA N-glycosylase activity\""^^xsd:string ; + owl:hasValue "GO:0004844"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004844"^^xsd:string ; + owl:hasValue "15174 \"uracil DNA N-glycosylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -224923,39 +224923,39 @@ bo:1641 a owl:Class ; rdfs:label "interstrand crosslink repair"@en , "pyrimidine-dimer repair DNA damage excision"@en , "GO:0006289"@en , "nucleotide-excision repair"@en , "NER"@en , "intrastrand cross-link repair"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598206 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "595514 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592467 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "531126 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507374 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "552172 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585782 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "GO:0045001"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487419 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "536498 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517373 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "557756 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531126 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "598206 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536498 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "448578 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552172 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "547562 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -224963,11 +224963,11 @@ bo:1641 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557756 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "GO:0006289"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568369 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "581571 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -224975,11 +224975,11 @@ bo:1641 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73885 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "542208 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006289"^^xsd:string ; + owl:hasValue "507374 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -224987,35 +224987,35 @@ bo:1641 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597432 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "487419 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469707 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "517373 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581571 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "469707 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448578 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "597432 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045001"^^xsd:string ; + owl:hasValue "73885 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595514 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "585782 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542208 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "592467 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547562 \"Nucleotide Excision Repair\""^^xsd:string ; + owl:hasValue "568369 \"Nucleotide Excision Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -225190,7 +225190,7 @@ bo:13205 a sybio:Compound , owl:NamedIndividual ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the transfer of metal ions from one side of a membrane to the other."@en ; - rdfs:label "metal ion transmembrane transporter"@en , "heavy metal ion porter"@en , "heavy metal ion:hydrogen symporter"@en , "heavy metal ion transporter"@en , "heavy metal-exporting ATPase"@en , "GO:0046873"@en , "high affinity metal ion uptake transporter"@en , "low affinity metal ion uptake transporter"@en ; + rdfs:label "metal ion transmembrane transporter"@en , "heavy metal ion porter"@en , "heavy metal ion:hydrogen symporter"@en , "heavy metal ion transporter"@en , "heavy metal-exporting ATPase"@en , "high affinity metal ion uptake transporter"@en , "GO:0046873"@en , "low affinity metal ion uptake transporter"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0046873"^^xsd:string ; @@ -225257,11 +225257,11 @@ bo:2294 a owl:NamedIndividual , sybio:Protein ; rdfs:label "bacterial Ca2+ Mg2+ ATPase"@en , "hydrogen ion translocating A-type ATPase"@en , "H+-transporting two-sector ATPase"@en , "hydrogen ion translocating F-type ATPase"@en , "H+-transporting ATPase"@en , "mitochondrial ATPase"@en , "ATP phosphohydrolase"@en , "hydrogen ion transporting two-sector ATPase"@en , "F0F1-ATPase"@en , "chloroplast ATPase"@en , "hydrogen ion translocating V-type ATPase"@en , "FoF1-ATPase"@en , "activity"@en , "proton-transporting ATPase activity, rotational mechanism"@en , "ATPase"@en , "F1-ATPase"@en , "GO:0046961"@en , "ATP synthase"@en , "coupling factors"@en , "hydrogen ion transporting ATPase activity rotational mechanism"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ATPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0046961"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046961"^^xsd:string ; + owl:hasValue "ATPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -225737,11 +225737,11 @@ bo:16807 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "RFBG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0451"^^xsd:string ; + owl:hasValue "0047733"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047733"^^xsd:string ; + owl:hasValue "COG0451"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -225888,11 +225888,11 @@ bo:17548 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GCL"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009028"^^xsd:string ; + owl:hasValue "COG0028"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0028"^^xsd:string ; + owl:hasValue "0009028"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -226023,11 +226023,11 @@ bo:17812 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.6.6.9"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0243"^^xsd:string ; + owl:hasValue "0009033"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009033"^^xsd:string ; + owl:hasValue "COG0243"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -226640,6 +226640,17 @@ bo:10194 a sybio:Protein , owl:NamedIndividual , bo:1277 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10194"@en . +bo:25592 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "G10609 + G00123 <=> G10619 + G00124"@en , "gl:G00123 <=> gl:G00123"@en ; + sybio:accession "RN:R05956"^^xsd:string ; + sybio:catalyzedBy bo:18709 ; + sybio:catalyzingClass bo:25593 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25592"@en . + bo:10282 a sybio:Protein , bo:1408 , bo:473 , owl:NamedIndividual ; rdfs:comment "putative N-deacylase;BSU23810"@en , "Uncharacterized protein yqjN"@en ; rdfs:label "YqjN"@en , "yqjN"@en , "BSU23810"@en ; @@ -226658,17 +226669,6 @@ bo:10282 a sybio:Protein , bo:1408 , bo:473 , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "10282"@en . -bo:25592 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "G10609 + G00123 <=> G10619 + G00124"@en , "gl:G00123 <=> gl:G00123"@en ; - sybio:accession "RN:R05956"^^xsd:string ; - sybio:catalyzedBy bo:18709 ; - sybio:catalyzingClass bo:25593 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25592"@en . - bo:6599 a owl:NamedIndividual , sybio:TF ; rdfs:comment "putative transcriptional regulator (DeoR family)"@en ; rdfs:label "YcnK"@en , "BSU03960"@en ; @@ -226681,14 +226681,14 @@ bo:6599 a owl:NamedIndividual , sybio:TF ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.;"@en ; - rdfs:label "mitochondrial electron transport complex 1"@en , "ubiquinone reductase"@en , "electron transfer complex I"@en , "NADH-ubiquinone reductase"@en , "mitochondrial electron transport complex I"@en , "type 1 dehydrogenase"@en , "NADH-Q6 oxidoreductase"@en , "NADH:ubiquinone oxidoreductase complex"@en , "NADH-CoQ reductase"@en , "NADH-CoQ oxidoreductase"@en , "DPNH-coenzyme Q reductase"@en , "NADH-ubiquinone-1 reductase"@en , "NADH coenzyme Q1 reductase"@en , "NADH-ubiquinone oxidoreductase"@en , "NADH-coenzyme Q reductase"@en , "reduced nicotinamide adenine dinucleotide-coenzyme Q reductase"@en , "NADH-coenzyme Q oxidoreductase"@en , "dihydronicotinamide adenine dinucleotide-coenzyme Q reductase"@en , "complex I"@en , "DPNH-ubiquinone reductase"@en , "complex 1 dehydrogenase"@en , "coenzyme Q reductase"@en , "NADH dehydrogenase (ubiquinone)"@en , "NADH:ubiquinone oxidoreductase"@en , "GO:0008137"@en ; + rdfs:label "mitochondrial electron transport complex 1"@en , "ubiquinone reductase"@en , "electron transfer complex I"@en , "NADH-ubiquinone reductase"@en , "mitochondrial electron transport complex I"@en , "type 1 dehydrogenase"@en , "NADH-Q6 oxidoreductase"@en , "NADH:ubiquinone oxidoreductase complex"@en , "NADH-CoQ reductase"@en , "NADH-CoQ oxidoreductase"@en , "DPNH-coenzyme Q reductase"@en , "NADH-ubiquinone-1 reductase"@en , "NADH coenzyme Q1 reductase"@en , "NADH-ubiquinone oxidoreductase"@en , "NADH-coenzyme Q reductase"@en , "reduced nicotinamide adenine dinucleotide-coenzyme Q reductase"@en , "dihydronicotinamide adenine dinucleotide-coenzyme Q reductase"@en , "NADH-coenzyme Q oxidoreductase"@en , "complex I"@en , "DPNH-ubiquinone reductase"@en , "complex 1 dehydrogenase"@en , "coenzyme Q reductase"@en , "NADH dehydrogenase (ubiquinone)"@en , "NADH:ubiquinone oxidoreductase"@en , "GO:0008137"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008137"^^xsd:string ; + owl:hasValue "NADH-DEHYDROG-A-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NADH-DEHYDROG-A-RXN"^^xsd:string ; + owl:hasValue "22973 \"NADH dehydrogenase (ubiquinone) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -226696,16 +226696,27 @@ bo:6599 a owl:NamedIndividual , sybio:TF ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "22973 \"NADH dehydrogenase (ubiquinone) activity\""^^xsd:string ; + owl:hasValue "1.6.5.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.5.3"^^xsd:string ; + owl:hasValue "GO:0008137"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:25680 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "G10613 + C02189 <=> G10619 + G00154"@en , "cpd:C02189 + cpd:C00190 <=> cpd:C02189 + cpd:C00190"@en ; + sybio:accession "RN:R05925"^^xsd:string ; + sybio:catalyzedBy bo:19015 ; + sybio:catalyzingClass bo:25681 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25680"@en . + bo:10370 a sybio:Protein , bo:200 , owl:NamedIndividual ; rdfs:comment "SpoIVD-associated factor A"@en , "BSU27840;morphogenetic protein associated with SpoVID;"@en ; rdfs:label "safA"@en , "SafA"@en , "YrbA"@en , "BSU27840"@en ; @@ -226724,17 +226735,6 @@ bo:10370 a sybio:Protein , bo:200 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10370"@en . -bo:25680 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "G10613 + C02189 <=> G10619 + G00154"@en , "cpd:C02189 + cpd:C00190 <=> cpd:C02189 + cpd:C00190"@en ; - sybio:accession "RN:R05925"^^xsd:string ; - sybio:catalyzedBy bo:19015 ; - sybio:catalyzingClass bo:25681 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25680"@en . - bo:6687 a owl:NamedIndividual , sybio:TF ; rdfs:comment "methyl-accepting chemotaxis proteins (MCP)-glutamate methylesterase"@en ; rdfs:label "CheB"@en , "BSU16420"@en , "CheL"@en ; @@ -227234,6 +227234,17 @@ bo:10069 a bo:364 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10069"@en . +bo:25467 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C04780 <=> cpd:C04780"@en , "C00002 + C04780 + C00010 <=> C00020 + C00013 + C16327"@en ; + sybio:accession "RN:R07887"^^xsd:string ; + sybio:catalyzedBy bo:18463 ; + sybio:catalyzingClass bo:21896 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25467"@en . + bo:10157 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU18270"@en , "Uncharacterized protein ynzE"@en ; rdfs:label "BSU18270"@en , "ynzE"@en , "YnzE"@en ; @@ -227251,17 +227262,6 @@ bo:10157 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10157"@en . -bo:25467 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C04780 <=> cpd:C04780"@en , "C00002 + C04780 + C00010 <=> C00020 + C00013 + C16327"@en ; - sybio:accession "RN:R07887"^^xsd:string ; - sybio:catalyzedBy bo:18463 ; - sybio:catalyzingClass bo:21896 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25467"@en . - bo:25555 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "gl:G00014 <=> gl:G00014"@en , "G10610 + G00014 <=> G10619 + G00015"@en ; @@ -227553,26 +227553,6 @@ bo:26296 a owl:NamedIndividual , bo:682 , bo:683 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26296"@en . -bo:11074 a sybio:Protein , owl:NamedIndividual , bo:1773 ; - rdfs:comment "BSU35400;flagellar hook-filament junction;"@en , "Flagellar hook-associated protein 3"@en ; - rdfs:label "YviD"@en , "FlgL"@en , "flgL"@en , "BSU35400"@en ; - sybio:AA "MRVTQGMIQQNSLRYIGSSYSKLDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQQYKSNASQAFTWLENTETNITEGIDILSKVRELAVEAQNDTNGEPERQAIGVEVKQLKEQLLNIANTQVNGRYIFNGTNSDKPPVTDNGDGTYTISDTADVVVNISNNMSLKVNSDPKSAFGGTSESGQNVFEMLDSFEKALNSGSLDGMDSVLNDIDHFSDGMSAERSDLGARYNRLELVNTRLSAQEETATKVLSDNEDVELEEVITEFIAQQSVHRATLAVNAQIVQPTLIDFLK"@en ; - sybio:accession "P96501"^^xsd:string , "BSU35400"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31699 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; - sybio:localisation "4 : Flagellar"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "32757.935"^^xsd:string ; - sybio:pI "4.615913"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11075 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11074"@en . - bo:26384 a bo:1221 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU17460;glutamine synthetase"@en , "Glutamine synthetase;derived protein"@en ; rdfs:label "BSU17460"@en , "GlnA"@en , "glnA"@en ; @@ -227595,23 +227575,25 @@ bo:26384 a bo:1221 , owl:NamedIndividual , sybio:Protein ; tawny:name "26384"@en ; owl:sameAs bo:6712 . -bo:11162 a owl:NamedIndividual , bo:1885 , sybio:Protein ; - rdfs:comment "BSU38620;3-alkylated purines and hypoxanthine DNA glycosidase"@en , "Putative 3-methyladenine DNA glycosylase"@en ; - rdfs:label "yxlJ"@en , "YxlJ"@en , "BSU38620"@en , "Aag"@en ; - sybio:AA "VTREKNPLPITFYQKTALELAPSLLGCLLVKETDEGTASGYIVETEAYMGAGDRAAHSFNNRRTKRTEIMFAEAGRVYTYVMHTHTLLNVVAAEEDVPQAVLIRAIEPHEGQLLMEERRPGRSPREWTNGPGKLTKALGVTMNDYGRWITEQPLYIESGYTPEAISTGPRIGIDNSGEARDYPWRFWVTGNRYVSR"@en ; - sybio:accession "P94378"^^xsd:string , "BSU38620"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; +bo:11074 a sybio:Protein , owl:NamedIndividual , bo:1773 ; + rdfs:comment "BSU35400;flagellar hook-filament junction;"@en , "Flagellar hook-associated protein 3"@en ; + rdfs:label "YviD"@en , "FlgL"@en , "flgL"@en , "BSU35400"@en ; + sybio:AA "MRVTQGMIQQNSLRYIGSSYSKLDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQQYKSNASQAFTWLENTETNITEGIDILSKVRELAVEAQNDTNGEPERQAIGVEVKQLKEQLLNIANTQVNGRYIFNGTNSDKPPVTDNGDGTYTISDTADVVVNISNNMSLKVNSDPKSAFGGTSESGQNVFEMLDSFEKALNSGSLDGMDSVLNDIDHFSDGMSAERSDLGARYNRLELVNTRLSAQEETATKVLSDNEDVELEEVITEFIAQQSVHRATLAVNAQIVQPTLIDFLK"@en ; + sybio:accession "P96501"^^xsd:string , "BSU35400"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31830 ; + sybio:encodedBy bo:31699 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "22091.185"^^xsd:string ; - sybio:pI "6.146523"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; + sybio:hasFunction ; + sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; + sybio:localisation "4 : Flagellar"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "32757.935"^^xsd:string ; + sybio:pI "4.615913"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11075 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11162"@en . + tawny:name "11074"@en . bo:26472 a bo:188 , owl:NamedIndividual , bo:1371 , sybio:Protein ; rdfs:comment "Isopentenyl-diphosphate delta-isomerase;derived protein"@en , "isopentenyl diphosphate isomerase;BSU22870"@en ; @@ -227633,6 +227615,24 @@ bo:26472 a bo:188 , owl:NamedIndividual , bo:1371 , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "26472"@en . +bo:11162 a owl:NamedIndividual , bo:1885 , sybio:Protein ; + rdfs:comment "BSU38620;3-alkylated purines and hypoxanthine DNA glycosidase"@en , "Putative 3-methyladenine DNA glycosylase"@en ; + rdfs:label "yxlJ"@en , "YxlJ"@en , "BSU38620"@en , "Aag"@en ; + sybio:AA "VTREKNPLPITFYQKTALELAPSLLGCLLVKETDEGTASGYIVETEAYMGAGDRAAHSFNNRRTKRTEIMFAEAGRVYTYVMHTHTLLNVVAAEEDVPQAVLIRAIEPHEGQLLMEERRPGRSPREWTNGPGKLTKALGVTMNDYGRWITEQPLYIESGYTPEAISTGPRIGIDNSGEARDYPWRFWVTGNRYVSR"@en ; + sybio:accession "P94378"^^xsd:string , "BSU38620"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31830 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "22091.185"^^xsd:string ; + sybio:pI "6.146523"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11162"@en . + bo:30050 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21190"@en ; rdfs:label "yomX"@en , "BSU21190"@en ; @@ -227658,24 +227658,6 @@ bo:30050 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "30050"@en . -bo:11250 a bo:259 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "putative serine/threonine-protein kinase;BSU00660;"@en , "Probable serine/threonine-protein kinase yabT;"@en ; - rdfs:label "YabT"@en , "BSU00660"@en , "yabT"@en ; - sybio:AA "MMNDALTSLACSLKPGTTIKGKWNGNTYTLRKQLGKGANGIVYLAETSDGHVALKVSDDSLSITSEVNVLKSFSKAQSVTMGPSFFDTDDAYIPSANTKVSFYAMEYIKGPLLLKYVSDKGAEWIPVLMIQLLSSLSVLHQQGWIFGDLKPDNLIVTGPPARIRCIDVGGTTKEGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMINSVHKKEFKKTNQPKEQLRSLIEGNPLLQKYKKALFSALNGDYQSADEMKKDMLDAGQKAAQRKQPIKASPQPATRQRQQKPRQGKITKTRYTPKQKPAKSGGLFETTLIVISVLALYFAYIIFFLI"@en ; - sybio:accession "BSU00660"^^xsd:string , "P37562"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29168 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "3.8 : Protein modification"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "37664.065"^^xsd:string ; - sybio:pI "9.593544"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11250"@en . - bo:26560 a owl:NamedIndividual , bo:1562 , sybio:Protein ; rdfs:comment "Delta-aminolevulinic acid dehydratase;derived protein"@en , "BSU28130;delta-aminolevulinic acid dehydratase (porphobilinogen synthase)"@en ; rdfs:label "hemB"@en , "BSU28130"@en , "HemB"@en ; @@ -227695,6 +227677,24 @@ bo:26560 a owl:NamedIndividual , bo:1562 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26560"@en . +bo:11250 a bo:259 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "putative serine/threonine-protein kinase;BSU00660;"@en , "Probable serine/threonine-protein kinase yabT;"@en ; + rdfs:label "YabT"@en , "BSU00660"@en , "yabT"@en ; + sybio:AA "MMNDALTSLACSLKPGTTIKGKWNGNTYTLRKQLGKGANGIVYLAETSDGHVALKVSDDSLSITSEVNVLKSFSKAQSVTMGPSFFDTDDAYIPSANTKVSFYAMEYIKGPLLLKYVSDKGAEWIPVLMIQLLSSLSVLHQQGWIFGDLKPDNLIVTGPPARIRCIDVGGTTKEGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMINSVHKKEFKKTNQPKEQLRSLIEGNPLLQKYKKALFSALNGDYQSADEMKKDMLDAGQKAAQRKQPIKASPQPATRQRQQKPRQGKITKTRYTPKQKPAKSGGLFETTLIVISVLALYFAYIIFFLI"@en ; + sybio:accession "BSU00660"^^xsd:string , "P37562"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29168 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "3.8 : Protein modification"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "37664.065"^^xsd:string ; + sybio:pI "9.593544"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11250"@en . + bo:31729 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU35990"@en ; rdfs:label "BSU35990"@en , "ywrO"@en ; @@ -227947,7 +227947,7 @@ bo:13846 a owl:NamedIndividual , sybio:Compound ; rdfs:label "guanylate kinase"@en , "guanosine monophosphate kinase"@en , "membrane-associated guanylate kinase"@en , "GO:0004385"@en , "ATP:GMP phosphotransferase"@en , "phosphotransferase"@en , "5'-GMP kinase"@en , "GMP kinase"@en , "deoxyguanylate kinase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.8"^^xsd:string ; + owl:hasValue "GUANYL-KIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -227955,7 +227955,7 @@ bo:13846 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GUANYL-KIN-RXN"^^xsd:string ; + owl:hasValue "2.7.4.8"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -228527,7 +228527,7 @@ bo:13809 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glucosphingosine glucosylhydrolase"@en , "glucocerebrosidase"@en , "beta-D-glucocerebrosidase"@en , "beta-glucocerebrosidase"@en , "beta-glucosylceramidase"@en , "glucosylsphingosine beta-D-glucosidase"@en , "glucosylsphingosine beta-glucosidase"@en , "acid beta-glucosidase"@en , "D-glucosyl-N-acylsphingosine glucohydrolase"@en , "psychosine hydrolase"@en , "glucosylceramidase"@en , "GO:0004348"@en , "glucosylcerebrosidase"@en , "ceramide glucosidase"@en , "GlcCer-beta-glucosidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.45"^^xsd:string ; + owl:hasValue "GO:0004348"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -228535,7 +228535,7 @@ bo:13809 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004348"^^xsd:string ; + owl:hasValue "3.2.1.45"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -228587,11 +228587,11 @@ bo:2986 a sybio:SigAPromoter , sybio:ConstitutiveSigAProm rdfs:label "phosphoenolpyruvate carboxylase"@en , "PEPK"@en , "phosphoenolpyruvate carboxykinase (ATP)"@en , "phosphoenolpyruvic carboxykinase"@en , "GO:0004612"@en , "phosphopyruvate carboxykinase"@en , "phosphopyruvate carboxylase"@en , "ATP:oxaloacetate carboxy-lyase"@en , "PEPCK"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.49"^^xsd:string ; + owl:hasValue "GO:0004612"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004612"^^xsd:string ; + owl:hasValue "4.1.1.49"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -229026,103 +229026,103 @@ bo:15555 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585747 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "602407 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70263 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "448497 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526196 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "568318 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547518 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "599602 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602407 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "GLUCONEO-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592405 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "597362 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542160 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "547518 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597362 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "GO:0006094"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557700 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "592405 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599602 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "536456 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595293 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "557700 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531083 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "487346 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598161 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "507297 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUCONEO-PWY"^^xsd:string ; + owl:hasValue "469627 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507297 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "595293 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600548 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "552111 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469627 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "598161 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517311 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "531083 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581520 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "70263 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536456 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "585747 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487346 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "517311 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552111 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "526196 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568318 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "542160 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448497 \"Gluconeogenesis\""^^xsd:string ; + owl:hasValue "600548 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006094"^^xsd:string ; + owl:hasValue "581520 \"Gluconeogenesis\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -229145,16 +229145,6 @@ bo:16297 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00119"@en ; tawny:name "16297"@en . -bo:16385 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "kynurenine-oxoglutarate transaminase [EC:2.6.1.7]"@en ; - rdfs:label "E2.6.1.7"@en ; - sybio:accession "0016212"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16386 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00816"@en ; - tawny:name "16385"@en . - bo:15731 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "aminoadipate-semialdehyde dehydrogenase large subunit [EC:1.2.1.31]"@en ; rdfs:label "E1.2.1.31L"@en ; @@ -229165,57 +229155,67 @@ bo:15731 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00142+K00143+K00144"@en ; tawny:name "15731"@en . +bo:16385 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "kynurenine-oxoglutarate transaminase [EC:2.6.1.7]"@en ; + rdfs:label "E2.6.1.7"@en ; + sybio:accession "0016212"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16386 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00816"@en ; + tawny:name "16385"@en . + a owl:NamedIndividual , owl:Class ; rdfs:comment "The process by which DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action."@en ; rdfs:label "DNA replication initiation"@en , "GO:0006270"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "586033 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "536891 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449288 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "517908 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547956 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "470407 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508054 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "552528 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006270"^^xsd:string ; + owl:hasValue "568780 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536891 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "581983 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595590 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "GO:0006270"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552528 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "542639 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592889 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "449288 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470407 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "586033 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531500 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "508054 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542639 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "547956 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -229227,19 +229227,19 @@ bo:15731 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568780 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "531500 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581983 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "595590 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517908 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "68952 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "68952 \"DNA replication initiation\""^^xsd:string ; + owl:hasValue "592889 \"DNA replication initiation\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -229652,16 +229652,6 @@ bo:16348 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16436 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovR"@en ; - rdfs:label "NOVR"@en ; - sybio:accession "Q9L9F0"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16437 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; - tawny:name "16436"@en . - bo:4783 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "cspB_terminator"@en ; sybio:NA "AAAAACTGCAGGTGCAAACCTGCAGTTTTTATTTTGACAA"^^xsd:string ; @@ -229674,6 +229664,16 @@ bo:4783 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4782 ; tawny:name "4783"@en . +bo:16436 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovR"@en ; + rdfs:label "NOVR"@en ; + sybio:accession "Q9L9F0"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16437 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; + tawny:name "16436"@en . + bo:28019 a owl:NamedIndividual , sybio:RBS ; rdfs:label "ytvI_RBS"@en ; sybio:NA "ACGAGAGGAGGACCGTTTTT"^^xsd:string ; @@ -229684,16 +229684,6 @@ bo:28019 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30834 ; tawny:name "28019"@en . -bo:16524 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]"@en ; - rdfs:label "PHNW"@en ; - sybio:accession "0047304"^^xsd:string , "COG0075"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16523 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03430"@en ; - tawny:name "16524"@en . - bo:4871 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "sbcD-yirY-yisB_terminator"@en ; sybio:NA "TGACTAAAAAGCAGCCCTCTCTTTGCAGAGCGGCTGCTTTTATCCGTTTCCA"^^xsd:string ; @@ -229706,6 +229696,16 @@ bo:4871 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4870 ; tawny:name "4871"@en . +bo:16524 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]"@en ; + rdfs:label "PHNW"@en ; + sybio:accession "0047304"^^xsd:string , "COG0075"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16523 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03430"@en ; + tawny:name "16524"@en . + bo:28107 a owl:NamedIndividual , sybio:RBS ; rdfs:label "yflA_RBS"@en ; sybio:NA "GAAAAAAGGGTGATGGG"^^xsd:string ; @@ -229735,15 +229735,15 @@ bo:16612 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0046553"@en , "bifunctional"@en , "oxidoreductase"@en , "D-malate dehydrogenase"@en , "D-malic enzyme"@en , "D-malate dehydrogenase (decarboxylating)"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.83"^^xsd:string ; + owl:hasValue "1.1.1.83-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.83-RXN"^^xsd:string ; + owl:hasValue "GO:0046553"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046553"^^xsd:string ; + owl:hasValue "1.1.1.83"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -230047,7 +230047,7 @@ bo:17353 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "GHRA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030267"^^xsd:string ; + owl:hasValue "0016618"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -230055,7 +230055,7 @@ bo:17353 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016618"^^xsd:string ; + owl:hasValue "0030267"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -230074,27 +230074,6 @@ bo:464 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "464"@en . -bo:17441 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "salicylate hydroxylase [EC:1.14.13.1]"@en ; - rdfs:label "E1.14.13.1"@en ; - sybio:accession "COG0654"^^xsd:string , "0018658"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17442 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00480"@en ; - tawny:name "17441"@en . - -bo:23299 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "UDP-glucose"@en , "D-fructose-6-phosphate 2-alpha-D-glucosyltransferase"@en , "C00029 + C00085 <=> C00015 + C02591"@en , "cpd:C00029 => cpd:C00029"@en ; - sybio:accession "RN:R00766"^^xsd:string ; - sybio:catalyzedBy bo:16714 ; - sybio:catalyzingClass bo:23300 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11648 ; - tawny:name "23299"@en . - bo:29024 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "putative fructose-amino acid permease"@en , "BSU32590"@en ; rdfs:label "frlN"@en , "BSU32590"@en , "yurN"@en ; @@ -230122,6 +230101,27 @@ bo:29024 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu32590"@en ; tawny:name "29024"@en . +bo:17441 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "salicylate hydroxylase [EC:1.14.13.1]"@en ; + rdfs:label "E1.14.13.1"@en ; + sybio:accession "COG0654"^^xsd:string , "0018658"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17442 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00480"@en ; + tawny:name "17441"@en . + +bo:23299 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "UDP-glucose"@en , "D-fructose-6-phosphate 2-alpha-D-glucosyltransferase"@en , "C00029 + C00085 <=> C00015 + C02591"@en , "cpd:C00029 => cpd:C00029"@en ; + sybio:accession "RN:R00766"^^xsd:string ; + sybio:catalyzedBy bo:16714 ; + sybio:catalyzingClass bo:23300 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11648 ; + tawny:name "23299"@en . + bo:552 a owl:Class ; rdfs:label "COG0768"@en ; rdfs:subClassOf bo:189 , sybio:COG ; @@ -230133,17 +230133,6 @@ bo:552 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "552"@en . -bo:23387 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "L-arabinose 1-phosphotransferase"@en , "cpd:C00259 <=> cpd:C00259"@en , "ATP"@en , "C00002 + C00259 <=> C00008 + C03906"@en ; - sybio:accession "RN:R01754"^^xsd:string ; - sybio:catalyzedBy bo:16846 ; - sybio:catalyzingClass bo:23388 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11652 , bo:11749 ; - tawny:name "23387"@en . - bo:29112 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU27780"@en ; sybio:accession "BSU27780"^^xsd:string ; @@ -230159,6 +230148,17 @@ bo:29112 a sybio:CDS , owl:NamedIndividual ; "5.0"@en ; tawny:name "29112"@en . +bo:23387 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "L-arabinose 1-phosphotransferase"@en , "cpd:C00259 <=> cpd:C00259"@en , "ATP"@en , "C00002 + C00259 <=> C00008 + C03906"@en ; + sybio:accession "RN:R01754"^^xsd:string ; + sybio:catalyzedBy bo:16846 ; + sybio:catalyzingClass bo:23388 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11652 , bo:11749 ; + tawny:name "23387"@en . + bo:640 a owl:Class ; rdfs:label "COG1785"@en ; rdfs:subClassOf bo:354 , sybio:COG ; @@ -230295,11 +230295,11 @@ bo:18094 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "COBD"@en , "CBIB"@en , "E6.3.1.10"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1270"^^xsd:string ; + owl:hasValue "0043757"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0043757"^^xsd:string ; + owl:hasValue "COG1270"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -230590,11 +230590,11 @@ bo:427 a owl:Class ; rdfs:label "GO:0016874"@en , "ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.-.-.-"^^xsd:string ; + owl:hasValue "GO:0016874"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016874"^^xsd:string ; + owl:hasValue "6.-.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -230734,17 +230734,6 @@ bo:30478 a sybio:CDS , owl:NamedIndividual ; "913.0"@en ; tawny:name "30478"@en . -bo:11678 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00620"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00620"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11678"@en . - bo:26988 a sybio:Protein , owl:NamedIndividual , bo:434 , bo:977 ; rdfs:comment "BSU13130;gamma-glutamyl phosphate reductase;"@en , "Gamma-glutamyl phosphate reductase;Glutamyl phosphate reductase;derived protein"@en ; rdfs:label "BSU13130"@en , "proA"@en , "ProA"@en ; @@ -230765,6 +230754,17 @@ bo:26988 a sybio:Protein , owl:NamedIndividual , bo:434 , sybio:taxId "224308"@en ; tawny:name "26988"@en . +bo:11678 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00620"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00620"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11678"@en . + bo:18057 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "light-independent protochlorophyllide reductase subunit B[EC:1.18.-.-]"@en ; rdfs:label "CHLB"@en ; @@ -231204,11 +231204,11 @@ bo:19150 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "FNSI"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033759"^^xsd:string ; + owl:hasValue "Q7XZQ8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q7XZQ8"^^xsd:string ; + owl:hasValue "0033759"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -231258,6 +231258,16 @@ bo:6279 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yycD"@en ; tawny:name "6279"@en . +bo:25360 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "3,4-dihydroxy-trans-cinnamate3-O-methyltransferase"@en , "C00019 + C01197 <=> C00021 + C01494"@en , "cpd:C01197 <=> cpd:C01197"@en , "S-Adenosyl-L-methionine"@en ; + sybio:accession "RN:R03366"^^xsd:string ; + sybio:catalyzingClass bo:25361 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25360"@en . + bo:10050 a bo:542 , bo:543 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative phosphatase;BSU11140"@en , "Putative phosphatase yitU"@en ; rdfs:label "YitU"@en , "BSU11140"@en , "yitU"@en ; @@ -231276,16 +231286,6 @@ bo:10050 a bo:542 , bo:543 , owl:NamedIndividual , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "10050"@en . -bo:25360 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "3,4-dihydroxy-trans-cinnamate3-O-methyltransferase"@en , "C00019 + C01197 <=> C00021 + C01494"@en , "cpd:C01197 <=> cpd:C01197"@en , "S-Adenosyl-L-methionine"@en ; - sybio:accession "RN:R03366"^^xsd:string ; - sybio:catalyzingClass bo:25361 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25360"@en . - bo:6367 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yflG-yflH_terminator"@en ; sybio:NA "GATAAACAATAAAACATGAGCCGGGCGATATGCGCCCGGCTTTCTTGATATTGTC"^^xsd:string ; @@ -231506,16 +231506,6 @@ bo:31358 a sybio:CDS , owl:NamedIndividual ; "27.0"@en ; tawny:name "31358"@en . -bo:27868 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "ohrB_RBS"@en ; - sybio:NA "AAATAAGGAGGTTGGGAAAT"^^xsd:string ; - sybio:begin "1382000"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1382019"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28889 ; - tawny:name "27868"@en . - bo:12558 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C4H6N2O2"@en ; rdfs:label "C4H6N2O2"@en , "N-Methylhydantoin"@en , "N-Methylimidazolidine-2,4-dione"@en ; @@ -231527,6 +231517,16 @@ bo:12558 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C02565"@en ; tawny:name "12558"@en . +bo:27868 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "ohrB_RBS"@en ; + sybio:NA "AAATAAGGAGGTTGGGAAAT"^^xsd:string ; + sybio:begin "1382000"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1382019"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28889 ; + tawny:name "27868"@en . + bo:7284 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Carboxylesterase"@en ; rdfs:label "Q4PNS3"@en ; @@ -232152,11 +232152,11 @@ bo:13651 a owl:NamedIndividual , sybio:Compound ; rdfs:label "aspartyl protease"@en , "aspartic protease"@en , "carboxyl protease"@en , "aspartic-type endopeptidase"@en , "GO:0004190"@en , "aspartic endopeptidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.23.-"^^xsd:string ; + owl:hasValue "GO:0004190"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004190"^^xsd:string ; + owl:hasValue "3.4.23.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -232277,16 +232277,6 @@ bo:31409 a owl:NamedIndividual , sybio:CDS ; "29.0"@en ; tawny:name "31409"@en . -bo:27919 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "pbpD_RBS"@en ; - sybio:NA "GAATTTAGGAGAAAAGAGA"^^xsd:string ; - sybio:begin "3233892"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3233910"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:29032 ; - tawny:name "27919"@en . - bo:12609 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C5H7NO4"@en ; rdfs:label "4-Oxoglutaramate"@en , "4-Ketoglutaramate"@en , "C5H7NO4"@en ; @@ -232298,6 +232288,16 @@ bo:12609 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05572"@en ; tawny:name "12609"@en . +bo:27919 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "pbpD_RBS"@en ; + sybio:NA "GAATTTAGGAGAAAAGAGA"^^xsd:string ; + sybio:begin "3233892"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3233910"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:29032 ; + tawny:name "27919"@en . + bo:7335 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Subtilisin"@en ; rdfs:label "qk"@en ; @@ -233427,11 +233427,11 @@ bo:21446 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "protohaem IX farnesyltransferase"@en , "heme O synthase"@en , "GO:0008495"@en , "haem O synthase"@en , "protoheme IX farnesyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.-"^^xsd:string ; + owl:hasValue "GO:0008495"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008495"^^xsd:string ; + owl:hasValue "2.5.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -233908,10 +233908,10 @@ bo:18925 a sybio:KOEN , owl:NamedIndividual , owl:Class ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans."@en ; - rdfs:label "endoglucanase D"@en , "endo-1 4-beta-D-glucanase"@en , "beta-1 4-glucanase"@en , "pancellase SS"@en , "celludextrinase"@en , "endoglucanase"@en , "cellulosin AP"@en , "1 4-glucanohydrolase"@en , "avicelase"@en , "celluase A"@en , "beta-1 4-endoglucan hydrolase"@en , "carboxymethyl cellulase"@en , "endo-1 4-beta-D-glucanohydrolase"@en , "cellulase A 3"@en , "endo-1 4-beta-glucanase"@en , "cellulase"@en , "alkali cellulase"@en , "9.5 cellulase"@en , "GO:0008810"@en ; + rdfs:label "endoglucanase D"@en , "endo-1 4-beta-D-glucanase"@en , "beta-1 4-glucanase"@en , "pancellase SS"@en , "celludextrinase"@en , "endoglucanase"@en , "cellulosin AP"@en , "1 4-glucanohydrolase"@en , "avicelase"@en , "celluase A"@en , "beta-1 4-endoglucan hydrolase"@en , "carboxymethyl cellulase"@en , "endo-1 4-beta-D-glucanohydrolase"@en , "endo-1 4-beta-glucanase"@en , "cellulase A 3"@en , "cellulase"@en , "alkali cellulase"@en , "9.5 cellulase"@en , "GO:0008810"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.4"^^xsd:string ; + owl:hasValue "RXN-2043"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -233919,7 +233919,7 @@ bo:18925 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-2043"^^xsd:string ; + owl:hasValue "3.2.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -234028,7 +234028,7 @@ bo:22238 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11603 ; tawny:name "22238"@en . -bo:22326 a owl:NamedIndividual , owl:Class , sybio:EC ; +bo:22326 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.2.1.53"@en ; rdfs:subClassOf sybio:EC ; @@ -234168,25 +234168,6 @@ bo:16115 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00680"@en ; tawny:name "16115"@en . -bo:10478 a owl:NamedIndividual , bo:364 , sybio:Protein ; - rdfs:comment "Uncharacterized MFS-type transporter yusP"@en , "putative multidrug-efflux transporter;BSU32880"@en ; - rdfs:label "BSU32880"@en , "YusP"@en , "yusP"@en ; - sybio:AA "MKMSKEGKQSKRTLLITGLIIAMFFSALDGTIVGTAMPKIVGDLGGLSMMTWLTTAYLLTSTTIVPIAGKLADLLGRRIVYVSGLIIFMAASALCGMANNMTELIIFRGLQGIGGGIMMPMAMIVIGDLFTGKQRAKFQGVFGAIYGLASVIGPQIGGWIVDSLNWKWVFYINLPVGIIAVIFIARGLQGRQQTGPINFDIAGIFTMIVGVVSLLLALSFGGKDYAWDSWQILGLFALALIGIVSFIIVESKAKEPILPMYLFKNRTFTFLNLIGFFMSIGMFGAITFVPFFMQGIVGVSASESGTIMTPMMISMIITSIIGGQLVYKIGIKPQIITGMLVMAGGFLLLTTLDLDTSKLVATSFMAIIGLGMGLVMPILTLALQESFSKEELGVVTSSSQFFRSIGGTFGITMLGAVMNARSGNLLTDKLVPYLDSLPAQASSFAAQLKGMIDTNPQGLLQSLFSPDAVKQIPAAFSSHIVPILKTSLMDSLHSVFYTGLIFIAVGAVFTLFLKPIKLSNKKAEDQQEKEKAAKAVESPSH"@en ; - sybio:accession "BSU32880"^^xsd:string , "O32182"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30471 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "57943.8"^^xsd:string ; - sybio:pI "9.457253"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10478"@en . - bo:19930 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "5.1.1.3"@en ; @@ -234210,6 +234191,36 @@ bo:25788 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 ; tawny:name "25788"@en . +bo:10478 a owl:NamedIndividual , bo:364 , sybio:Protein ; + rdfs:comment "Uncharacterized MFS-type transporter yusP"@en , "putative multidrug-efflux transporter;BSU32880"@en ; + rdfs:label "BSU32880"@en , "YusP"@en , "yusP"@en ; + sybio:AA "MKMSKEGKQSKRTLLITGLIIAMFFSALDGTIVGTAMPKIVGDLGGLSMMTWLTTAYLLTSTTIVPIAGKLADLLGRRIVYVSGLIIFMAASALCGMANNMTELIIFRGLQGIGGGIMMPMAMIVIGDLFTGKQRAKFQGVFGAIYGLASVIGPQIGGWIVDSLNWKWVFYINLPVGIIAVIFIARGLQGRQQTGPINFDIAGIFTMIVGVVSLLLALSFGGKDYAWDSWQILGLFALALIGIVSFIIVESKAKEPILPMYLFKNRTFTFLNLIGFFMSIGMFGAITFVPFFMQGIVGVSASESGTIMTPMMISMIITSIIGGQLVYKIGIKPQIITGMLVMAGGFLLLTTLDLDTSKLVATSFMAIIGLGMGLVMPILTLALQESFSKEELGVVTSSSQFFRSIGGTFGITMLGAVMNARSGNLLTDKLVPYLDSLPAQASSFAAQLKGMIDTNPQGLLQSLFSPDAVKQIPAAFSSHIVPILKTSLMDSLHSVFYTGLIFIAVGAVFTLFLKPIKLSNKKAEDQQEKEKAAKAVESPSH"@en ; + sybio:accession "BSU32880"^^xsd:string , "O32182"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30471 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "57943.8"^^xsd:string ; + sybio:pI "9.457253"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10478"@en . + +bo:25876 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C01054 <=> C01724"@en , "(S)-2,3-Epoxysqualene mutase (cyclizing, lanosterol-forming)"@en , "cpd:C01054 <=> cpd:C01054"@en ; + sybio:accession "RN:R03199"^^xsd:string ; + sybio:catalyzedBy bo:18565 ; + sybio:catalyzingClass bo:25877 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25876"@en . + bo:10566 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "hypothetical protein;BSU36720"@en , "Uncharacterized protein ywmE;"@en ; rdfs:label "YwmE"@en , "ywmE"@en , "BSU36720"@en ; @@ -234227,17 +234238,6 @@ bo:10566 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10566"@en . -bo:25876 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C01054 <=> C01724"@en , "(S)-2,3-Epoxysqualene mutase (cyclizing, lanosterol-forming)"@en , "cpd:C01054 <=> cpd:C01054"@en ; - sybio:accession "RN:R03199"^^xsd:string ; - sybio:catalyzedBy bo:18565 ; - sybio:catalyzingClass bo:25877 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25876"@en . - bo:5292 a sybio:Operon , owl:NamedIndividual ; rdfs:label "spoVAABCDEF-lysA"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -234246,6 +234246,16 @@ bo:5292 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "spoVAA,spoVAB,spoVAC,spoVAD,spoVAE,spoVAF,lysA"@en ; tawny:name "5292"@en . +bo:25964 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C05175 <=> cpd:C05175"@en , "C05175 + C00019 <=> C06163 + C00021"@en ; + sybio:accession "RN:R04691"^^xsd:string ; + sybio:catalyzingClass bo:25965 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25964"@en . + bo:10654 a bo:459 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "aldo-keto reductase;BSU39780"@en , "Protein iolS"@en ; rdfs:label "IolS"@en , "BSU39780"@en , "iolS"@en ; @@ -234264,16 +234274,6 @@ bo:10654 a bo:459 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10654"@en . -bo:25964 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C05175 <=> cpd:C05175"@en , "C05175 + C00019 <=> C06163 + C00021"@en ; - sybio:accession "RN:R04691"^^xsd:string ; - sybio:catalyzingClass bo:25965 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25964"@en . - bo:17033 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "malonate-semialdehyde dehydrogenase (acetylating) [EC:1.2.1.18]"@en ; rdfs:label "E1.2.1.18"@en ; @@ -234538,25 +234538,6 @@ bo:30283 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "30283"@en . -bo:11483 a owl:NamedIndividual , bo:660 , sybio:Protein ; - rdfs:comment "Type-2 restriction enzyme BsuMI component ydiS"@en , "DNA restriction enzyme component;BSU06100"@en ; - rdfs:label "BSU06100"@en , "ydiS"@en , "YdiS"@en ; - sybio:AA "MEISKQTSDLLLSLEKKKGTLPKFSVLRSIPRNRIIYGAPGTGKSNYLEREVGKIFGDNPYVFTRVTFFPGYTYGQFIGAYKPVPIYKKLSGEEEIFSSNFRDKMENFEPMIDYQFVPGPFIDVLIKALKNRYTNFILIIEEINRANAASVFGDIFQLLDRNKNGESDYPVTFGPDIMNYLARNGIKDEMIKLPSNFFIWATMNNADQGVLPLDTAFKRRWSFEYLELEKYRKAVDSWKLSLRYKGHNKVIMWNDFRDIINKRLKGKVPEDKLLGPFFLKESELWNQNVFKNKLLYYLKEDVFKHNPTIDFLNASTFSELIEKYDGSDNIFTFDIDDSSFVSD"@en ; - sybio:accession "O34885"^^xsd:string , "BSU06100"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30982 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "40031.35"^^xsd:string ; - sybio:pI "8.37162"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11484 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11483"@en . - bo:26793 a sybio:Protein , owl:NamedIndividual , bo:1829 ; rdfs:comment "ATP synthase (subunit gamma, component F1);BSU36820"@en , "ATP synthase gamma chain;derived protein"@en ; rdfs:label "BSU36820"@en , "AtpG"@en , "atpG"@en ; @@ -234578,16 +234559,24 @@ bo:26793 a sybio:Protein , owl:NamedIndividual , bo:1829 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26793"@en . -bo:11571 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00130"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00130"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11571"@en . +bo:11483 a owl:NamedIndividual , bo:660 , sybio:Protein ; + rdfs:comment "Type-2 restriction enzyme BsuMI component ydiS"@en , "DNA restriction enzyme component;BSU06100"@en ; + rdfs:label "BSU06100"@en , "ydiS"@en , "YdiS"@en ; + sybio:AA "MEISKQTSDLLLSLEKKKGTLPKFSVLRSIPRNRIIYGAPGTGKSNYLEREVGKIFGDNPYVFTRVTFFPGYTYGQFIGAYKPVPIYKKLSGEEEIFSSNFRDKMENFEPMIDYQFVPGPFIDVLIKALKNRYTNFILIIEEINRANAASVFGDIFQLLDRNKNGESDYPVTFGPDIMNYLARNGIKDEMIKLPSNFFIWATMNNADQGVLPLDTAFKRRWSFEYLELEKYRKAVDSWKLSLRYKGHNKVIMWNDFRDIINKRLKGKVPEDKLLGPFFLKESELWNQNVFKNKLLYYLKEDVFKHNPTIDFLNASTFSELIEKYDGSDNIFTFDIDDSSFVSD"@en ; + sybio:accession "O34885"^^xsd:string , "BSU06100"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30982 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "40031.35"^^xsd:string ; + sybio:pI "8.37162"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11484 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11483"@en . bo:30371 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU30110"@en ; @@ -234634,6 +234623,17 @@ bo:26881 a owl:NamedIndividual , sybio:Protein , bo:205 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26881"@en . +bo:11571 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00130"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00130"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11571"@en . + bo:19629 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "murB"@en ; @@ -234914,19 +234914,19 @@ bo:32967 a owl:NamedIndividual , sybio:CDS ; rdfs:label "threonine deaminase"@en , "threonine ammonia-lyase"@en , "serine deaminase"@en , "L-threonine dehydratase"@en , "L-threonine deaminase"@en , "L-threonine ammonia-lyase"@en , "L-serine dehydratase"@en , "L-threonine hydro-lyase"@en , "threonine dehydratase"@en , "GO:0004794"@en , "threonine dehydrase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004794"^^xsd:string ; + owl:hasValue "e0306"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.1.19"^^xsd:string ; + owl:hasValue "THREDEHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THREDEHYD-RXN"^^xsd:string ; + owl:hasValue "4.3.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0306"^^xsd:string ; + owl:hasValue "GO:0004794"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -234957,6 +234957,25 @@ bo:30158 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "30158"@en . +bo:26668 a bo:190 , bo:1250 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Putative penicillin binding protein Pbp;D-alanyl-D-alanine carboxypeptidase dacC;derived protein"@en , "D-alanyl-D-alanine carboxypeptidase;BSU18350"@en ; + rdfs:label "BSU18350"@en , "dacC"@en , "pbp"@en , "DacC"@en , "Pbp"@en ; + sybio:AA "MKKSIKLYVAVLLLFVVASVPYMHQAALAAEKQDALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNEDYDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWEPAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPAQGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLNGLIDEEDGKDIEDQIAVILANQ"@en ; + sybio:accession "P39844"^^xsd:string , "BSU18350"^^xsd:string , "Q71EH6"^^xsd:string , "16078896"^^xsd:string , "939990"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:28803 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "1.1 : Cell wall"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "52888.83"^^xsd:string ; + sybio:pI "5.532997"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26668"@en . + bo:11358 a owl:NamedIndividual , sybio:Protein , bo:470 , bo:507 ; rdfs:comment "Probable amino-acid ABC transporter permease protein yckA"@en , "putative ABC transporter (permease);BSU03370"@en ; rdfs:label "BSU03370"@en , "YckA"@en , "yckA"@en ; @@ -234977,25 +234996,6 @@ bo:11358 a owl:NamedIndividual , sybio:Protein , bo:470 , sybio:taxId "[224308, 1423]"@en ; tawny:name "11358"@en . -bo:26668 a bo:190 , bo:1250 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Putative penicillin binding protein Pbp;D-alanyl-D-alanine carboxypeptidase dacC;derived protein"@en , "D-alanyl-D-alanine carboxypeptidase;BSU18350"@en ; - rdfs:label "BSU18350"@en , "dacC"@en , "pbp"@en , "DacC"@en , "Pbp"@en ; - sybio:AA "MKKSIKLYVAVLLLFVVASVPYMHQAALAAEKQDALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNEDYDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWEPAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPAQGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLNGLIDEEDGKDIEDQIAVILANQ"@en ; - sybio:accession "P39844"^^xsd:string , "BSU18350"^^xsd:string , "Q71EH6"^^xsd:string , "16078896"^^xsd:string , "939990"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:28803 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "1.1 : Cell wall"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "52888.83"^^xsd:string ; - sybio:pI "5.532997"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26668"@en . - bo:6084 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ywcE"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -235498,7 +235498,7 @@ bo:12451 a owl:NamedIndividual , sybio:Compound ; rdfs:label "uridine 5'-phosphate pyrophosphorylase"@en , "UPRTase"@en , "uridine monophosphate pyrophosphorylase"@en , "uridylate pyrophosphorylase"@en , "uridylic pyrophosphorylase"@en , "UMP pyrophosphorylase"@en , "uracil phosphoribosyltransferase"@en , "UMP diphosphorylase"@en , "GO:0004845"@en , "UMP:pyrophosphate phosphoribosyltransferase"@en , "UMP:diphosphate phospho-alpha-D-ribosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15175 \"uracil phosphoribosyltransferase activity\""^^xsd:string ; + owl:hasValue "URACIL-PRIBOSYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -235510,7 +235510,7 @@ bo:12451 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "URACIL-PRIBOSYLTRANS-RXN"^^xsd:string ; + owl:hasValue "15175 \"uracil phosphoribosyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -236080,11 +236080,11 @@ bo:15964 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "HYUA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0145"^^xsd:string ; + owl:hasValue "0047423"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047423"^^xsd:string ; + owl:hasValue "COG0145"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -236597,11 +236597,11 @@ bo:16669 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.8.1.7"@en , "GOR"@en , "GSR"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004362"^^xsd:string ; + owl:hasValue "COG1249"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1249"^^xsd:string ; + owl:hasValue "0004362"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -236619,6 +236619,30 @@ bo:16757 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05342"@en ; tawny:name "16757"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states."@en ; + rdfs:label "one-carbon metabolic process"@en , "one-carbon metabolism"@en , "one-carbon transfer metabolism"@en , "one-carbon transfer metabolic process"@en , "GO:0006730"@en , "one carbon metabolic process"@en , "one carbon metabolism"@en ; + rdfs:subClassOf , sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0019753"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006730"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0019754"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "C1cyc"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + a owl:Class ; rdfs:comment "The process of introducing one or more phosphate groups into an organic acid."@en ; @@ -236641,30 +236665,6 @@ bo:16845 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12446"@en ; tawny:name "16845"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states."@en ; - rdfs:label "one-carbon metabolic process"@en , "one-carbon metabolism"@en , "one-carbon transfer metabolism"@en , "one-carbon transfer metabolic process"@en , "GO:0006730"@en , "one carbon metabolic process"@en , "one carbon metabolism"@en ; - rdfs:subClassOf , sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "C1cyc"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019753"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019754"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006730"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28428 a sybio:Shim , owl:NamedIndividual ; rdfs:label "bglP_RBS_upstream"@en ; sybio:NA "TGGTGCAGGTGCAGGAGGAGACTCTCGCAATCTGTGTCATTTAGGTTTTTTTATTCTCTTTTAGGAGGTGATGCAGCATTTGATACAAAAAAAGCTGGTGAAAGGCGGCCACCTTTCATCCAGCAGTCCCCC"^^xsd:string ; @@ -236716,11 +236716,11 @@ bo:16933 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E4.2.1.30S"@en , "PDUE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4910"^^xsd:string ; + owl:hasValue "0046405"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046405"^^xsd:string ; + owl:hasValue "COG4910"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -237277,11 +237277,11 @@ bo:4979 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "nascent polypeptide association"@en , "protein targeting"@en , "GO:0006605"@en , "protein sorting along secretory pathway"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006605"^^xsd:string ; + owl:hasValue "Protein_targeting"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Protein_targeting"^^xsd:string ; + owl:hasValue "GO:0006605"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -237894,11 +237894,11 @@ bo:18730 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "B3GALT1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "0008499"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008499"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -238202,6 +238202,18 @@ bo:10195 a bo:828 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10195"@en . +bo:25593 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.62"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.62"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25593"@en . + bo:10283 a bo:605 , bo:1410 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU23840;ribonuclease Z;"@en , "Ribonuclease Z"@en ; rdfs:label "Rnz"@en , "YqjK"@en , "rnz"@en , "BSU23840"@en ; @@ -238219,17 +238231,17 @@ bo:10283 a bo:605 , bo:1410 , owl:NamedIndividual , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "10283"@en . -bo:25593 a owl:NamedIndividual , owl:Class , sybio:EC ; +bo:25681 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.62"@en ; + rdfs:label "2.4.2.26"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.62"^^xsd:string ; + owl:hasValue "2.4.2.26"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25593"@en . + tawny:name "25681"@en . bo:10371 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU28099"@en , "Uncharacterized membrane protein yszA;"@en ; @@ -238247,18 +238259,6 @@ bo:10371 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10371"@en . -bo:25681 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.2.26"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.26"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25681"@en . - bo:6688 a owl:NamedIndividual , sybio:TF ; rdfs:comment "putative transcriptional regulator (GntR family)"@en ; rdfs:label "BSU16810"@en , "YmfC"@en ; @@ -238471,18 +238471,18 @@ bo:22006 a owl:NamedIndividual , sybio:Reaction ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Any molecular entity that serves as an electron acceptor and electron donor in an electron transport system."@en ; - rdfs:label "small blue copper electron carrier"@en , "iron-sulfur electron transfer carrier"@en , "dicluster bacterial-type ferredoxin"@en , "amicyanin"@en , "redox-active disulfide bond electron carrier"@en , "electron transporter"@en , "GO:0009055"@en , "2Fe-2S electron transfer carrier"@en , "electron donor"@en , "thioredoxin-like 2Fe-2S ferredoxin"@en , "mononuclear iron electron carrier"@en , "polyferredoxin"@en , "electron carrier"@en , "high-potential iron-sulfur carrier"@en , "electron transfer flavoprotein group II"@en , "chloroplast-type ferredoxin"@en , "azurin"@en , "electron carrier chlorophyll electron transport system"@en , "electron transfer flavoprotein"@en , "bacterial-type ferredoxin"@en , "copper electron carrier"@en , "adrenodoxin-type ferredoxin"@en , "electron transfer flavoprotein group I"@en , "monocluster bacterial-type ferredoxin"@en , "electron acceptor"@en , "3Fe-4S 4Fe-4S electron transfer carrier"@en , "rubredoxin"@en ; + rdfs:label "small blue copper electron carrier"@en , "iron-sulfur electron transfer carrier"@en , "dicluster bacterial-type ferredoxin"@en , "amicyanin"@en , "redox-active disulfide bond electron carrier"@en , "electron transporter"@en , "GO:0009055"@en , "2Fe-2S electron transfer carrier"@en , "electron donor"@en , "thioredoxin-like 2Fe-2S ferredoxin"@en , "mononuclear iron electron carrier"@en , "polyferredoxin"@en , "electron carrier"@en , "high-potential iron-sulfur carrier"@en , "chloroplast-type ferredoxin"@en , "electron transfer flavoprotein group II"@en , "azurin"@en , "electron carrier chlorophyll electron transport system"@en , "bacterial-type ferredoxin"@en , "copper electron carrier"@en , "electron transfer flavoprotein"@en , "adrenodoxin-type ferredoxin"@en , "electron transfer flavoprotein group I"@en , "monocluster bacterial-type ferredoxin"@en , "electron acceptor"@en , "3Fe-4S 4Fe-4S electron transfer carrier"@en , "rubredoxin"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009054"^^xsd:string ; + owl:hasValue "GO:0009055"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009053"^^xsd:string ; + owl:hasValue "GO:0009054"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009055"^^xsd:string ; + owl:hasValue "GO:0009053"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -238595,7 +238595,7 @@ bo:19346 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "riboflavin formation"@en , "GO:0009231"@en , "riboflavin synthesis"@en , "vitamin G biosynthetic process"@en , "vitamin G biosynthesis"@en , "vitamin B2 biosynthesis"@en , "riboflavin biosynthetic process"@en , "riboflavin biosynthesis"@en , "vitamin B2 biosynthetic process"@en , "riboflavin anabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Riboflavin"^^xsd:string ; + owl:hasValue "GO:0009231"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -238603,7 +238603,7 @@ bo:19346 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009231"^^xsd:string ; + owl:hasValue "Riboflavin"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -238682,23 +238682,6 @@ bo:19522 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "19522"@en ; owl:sameAs bo:26207 . -bo:10158 a sybio:Protein , owl:NamedIndividual ; - rdfs:comment "UPF0713 protein yngL"@en , "putative integral inner membrane protein;BSU18290"@en ; - rdfs:label "YngL"@en , "BSU18290"@en , "yngL"@en ; - sybio:AA "MDRLSFLTFIMLILASYRLTHLIVFDKITEFIRKPFMKKKRIVDQNGHVDEKSVPASNFGYMLNCYWCAGVWCAILIGLGYLFLPRIAIPLIFILAIAGAQAILETAVGVGVKLIDVLKSLQTMMNDKKS"@en ; - sybio:accession "BSU18290"^^xsd:string , "O34506"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:29841 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "5.1 : From B. subtilis"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "14669.125"^^xsd:string ; - sybio:pI "9.405342"^^xsd:string ; - sybio:productType "pm : putative membrane component"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10158"@en . - bo:19610 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "pdhC"@en ; @@ -238720,6 +238703,23 @@ bo:25468 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25468"@en . +bo:10158 a sybio:Protein , owl:NamedIndividual ; + rdfs:comment "UPF0713 protein yngL"@en , "putative integral inner membrane protein;BSU18290"@en ; + rdfs:label "YngL"@en , "BSU18290"@en , "yngL"@en ; + sybio:AA "MDRLSFLTFIMLILASYRLTHLIVFDKITEFIRKPFMKKKRIVDQNGHVDEKSVPASNFGYMLNCYWCAGVWCAILIGLGYLFLPRIAIPLIFILAIAGAQAILETAVGVGVKLIDVLKSLQTMMNDKKS"@en ; + sybio:accession "BSU18290"^^xsd:string , "O34506"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:29841 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "5.1 : From B. subtilis"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "14669.125"^^xsd:string ; + sybio:pI "9.405342"^^xsd:string ; + sybio:productType "pm : putative membrane component"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10158"@en . + bo:25556 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.4.1.143"@en ; @@ -239074,25 +239074,6 @@ bo:26297 a sybio:Protein , bo:684 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26297"@en . -bo:11075 a bo:1785 , owl:NamedIndividual , sybio:Protein , bo:1786 ; - rdfs:comment "flagellar hook-filament junction;BSU35410;;"@en , "Flagellar hook-associated protein 1"@en ; - rdfs:label "FlgK"@en , "flgK"@en , "BSU35410"@en ; - sybio:AA "MTSTFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVLNETDDSGLNSVLNSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVNSLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEGTVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSLLGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFTGGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLANVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVSLDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGMGVGGR"@en ; - sybio:accession "BSU35410"^^xsd:string , "P39810"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31698 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; - sybio:localisation "4 : Flagellar"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "54352.87"^^xsd:string ; - sybio:pI "4.572014"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11111 , bo:11112 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11075"@en . - bo:26385 a sybio:Protein , bo:1224 , owl:NamedIndividual ; rdfs:comment "Beta-xylosidase;derived protein"@en , "BSU17580;xylan beta-1,4-xylosidase"@en ; rdfs:label "xynB"@en , "BSU17580"@en , "XynB"@en , "YnaK"@en ; @@ -239113,26 +239094,24 @@ bo:26385 a sybio:Protein , bo:1224 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26385"@en . -bo:11163 a bo:353 , sybio:Protein , bo:769 , bo:356 , owl:NamedIndividual ; - rdfs:comment "ABC membrane transporter (ATP-binding protein) required for cytochrome bd function;BSU38730"@en , "ATP-binding/permease protein cydD"@en ; - rdfs:label "BSU38730"@en , "YxkN"@en , "cydD"@en , "CydD"@en ; - sybio:AA "MKKEEWILPYIKQNARLFVLVIFLGAVTIFSAAFLMFTSGFLISKAATRPENILLIYVPIVAVRTFGIARSVSRYVERLVGHHIILKIVSDMRVRLYNMLEPGALMLRSRFRTGDMLGILSEDIEHLQDAFLKTIFPAISALLLYAVSVIALGFFSWPFAILLALYLFVLVVLFPVVSLLVTRAKNAKLKSGRNVLYSRLTDAVMGVSDWMFSGRRHAFIDAYEKEERDWFELERKKQRFTRWRDFAAQCLVAGLILLMLFWTAGQQADGELAKTMIAAFVLVVFPLTEAFLPLSDALGEVPGYQDSIRRMNNVAPQPEASQTESGDQILDLQDVTLAFRDVTFSYDNSSQVLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLNGVETALLKDQIADAVAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAKQVKLHDYIESLPDGYHTSVQETGIRFSGGERQRIALARILLQDTPIIILDEPTVGLDPITERELMETVFEVLKGKTILWITHHLAGVEAADKIVFLENGKTEMEGTHEELLAANERYRRLYHLDVPVK"@en ; - sybio:accession "BSU38730"^^xsd:string , "P94367"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31843 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:interactsWith bo:9500 ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "64507.48"^^xsd:string ; - sybio:pI "6.237633"^^xsd:string ; - sybio:productType "t : transporter"^^xsd:string ; - sybio:relatedTo bo:11165 , bo:11164 , bo:11166 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11163"@en . +bo:11075 a bo:1785 , owl:NamedIndividual , sybio:Protein , bo:1786 ; + rdfs:comment "flagellar hook-filament junction;BSU35410;;"@en , "Flagellar hook-associated protein 1"@en ; + rdfs:label "FlgK"@en , "flgK"@en , "BSU35410"@en ; + sybio:AA "MTSTFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVLNETDDSGLNSVLNSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVNSLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEGTVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSLLGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFTGGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLANVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVSLDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGMGVGGR"@en ; + sybio:accession "BSU35410"^^xsd:string , "P39810"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31698 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; + sybio:localisation "4 : Flagellar"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "54352.87"^^xsd:string ; + sybio:pI "4.572014"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11111 , bo:11112 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11075"@en . bo:26473 a bo:197 , bo:1372 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Cytidylate kinase;derived protein"@en , "BSU22890;cytidylate kinase"@en ; @@ -239154,6 +239133,27 @@ bo:26473 a bo:197 , bo:1372 , sybio:Protein , owl:NamedInd sybio:taxId "224308"@en ; tawny:name "26473"@en . +bo:11163 a bo:353 , sybio:Protein , bo:769 , bo:356 , owl:NamedIndividual ; + rdfs:comment "ABC membrane transporter (ATP-binding protein) required for cytochrome bd function;BSU38730"@en , "ATP-binding/permease protein cydD"@en ; + rdfs:label "BSU38730"@en , "YxkN"@en , "cydD"@en , "CydD"@en ; + sybio:AA "MKKEEWILPYIKQNARLFVLVIFLGAVTIFSAAFLMFTSGFLISKAATRPENILLIYVPIVAVRTFGIARSVSRYVERLVGHHIILKIVSDMRVRLYNMLEPGALMLRSRFRTGDMLGILSEDIEHLQDAFLKTIFPAISALLLYAVSVIALGFFSWPFAILLALYLFVLVVLFPVVSLLVTRAKNAKLKSGRNVLYSRLTDAVMGVSDWMFSGRRHAFIDAYEKEERDWFELERKKQRFTRWRDFAAQCLVAGLILLMLFWTAGQQADGELAKTMIAAFVLVVFPLTEAFLPLSDALGEVPGYQDSIRRMNNVAPQPEASQTESGDQILDLQDVTLAFRDVTFSYDNSSQVLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLNGVETALLKDQIADAVAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAKQVKLHDYIESLPDGYHTSVQETGIRFSGGERQRIALARILLQDTPIIILDEPTVGLDPITERELMETVFEVLKGKTILWITHHLAGVEAADKIVFLENGKTEMEGTHEELLAANERYRRLYHLDVPVK"@en ; + sybio:accession "BSU38730"^^xsd:string , "P94367"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31843 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:interactsWith bo:9500 ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "64507.48"^^xsd:string ; + sybio:pI "6.237633"^^xsd:string ; + sybio:productType "t : transporter"^^xsd:string ; + sybio:relatedTo bo:11165 , bo:11164 , bo:11166 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11163"@en . + bo:30051 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21200"@en ; rdfs:label "BSU21200"@en , "yomW"@en ; @@ -239179,25 +239179,6 @@ bo:30051 a owl:NamedIndividual , sybio:CDS ; "7.0"@en ; tawny:name "30051"@en . -bo:11251 a bo:260 , owl:NamedIndividual , sybio:Protein , bo:261 ; - rdfs:comment "tRNA(Ile)-lysidine synthase"@en , "BSU00670;tRNAile lysidine synthetase"@en ; - rdfs:label "TilS"@en , "BSU00670"@en , "YacA"@en , "tilS"@en , "MesJ"@en ; - sybio:AA "VKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKNVPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKAGDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVIPNSDRIVLQYRQHEKCRGQAKS"@en ; - sybio:accession "P37563"^^xsd:string , "BSU00670"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29169 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "53429.895"^^xsd:string ; - sybio:pI "8.582573"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11252 , bo:26886 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11251"@en . - bo:26561 a sybio:Protein , owl:NamedIndividual , bo:498 ; rdfs:comment "BSU28140;uroporphyrinogen III cosynthase"@en , "Uroporphyrinogen-III synthase;derived protein"@en ; rdfs:label "HemD"@en , "hemD"@en , "BSU28140"@en ; @@ -239217,6 +239198,25 @@ bo:26561 a sybio:Protein , owl:NamedIndividual , bo:498 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26561"@en . +bo:11251 a bo:260 , owl:NamedIndividual , sybio:Protein , bo:261 ; + rdfs:comment "tRNA(Ile)-lysidine synthase"@en , "BSU00670;tRNAile lysidine synthetase"@en ; + rdfs:label "TilS"@en , "BSU00670"@en , "YacA"@en , "tilS"@en , "MesJ"@en ; + sybio:AA "VKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKNVPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKAGDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVIPNSDRIVLQYRQHEKCRGQAKS"@en ; + sybio:accession "P37563"^^xsd:string , "BSU00670"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29169 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "53429.895"^^xsd:string ; + sybio:pI "8.582573"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11252 , bo:26886 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11251"@en . + bo:19309 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "nagP"@en ; @@ -239457,11 +239457,11 @@ bo:13847 a sybio:Compound , owl:NamedIndividual ; rdfs:label "helicase"@en , "GO:0004386"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7001 \"helicase activity\""^^xsd:string ; + owl:hasValue "GO:0004386"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004386"^^xsd:string ; + owl:hasValue "7001 \"helicase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -239996,7 +239996,7 @@ bo:12131 a owl:NamedIndividual , sybio:Compound ; rdfs:label "gamma-glutamate kinase"@en , "ATP-L-glutamate 5-phosphotransferase"@en , "ATP:L-glutamate 5-phosphotransferase"@en , "glutamate 5-kinase"@en , "ATP:gamma-L-glutamate phosphotransferase"@en , "gamma-glutamyl kinase"@en , "GO:0004349"@en , "glutamate kinase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.11"^^xsd:string ; + owl:hasValue "GO:0004349"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -240004,7 +240004,7 @@ bo:12131 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004349"^^xsd:string ; + owl:hasValue "2.7.2.11"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -240066,11 +240066,11 @@ bo:21980 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "ribonuclease 3"@en , "pre-mRNA 3'-end processing endonuclease"@en , "GO:0004525"@en , "ribonuclease III"@en , "RNase III"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.3-RXN"^^xsd:string ; + owl:hasValue "GO:0004525"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.3"^^xsd:string ; + owl:hasValue "3.1.26.3-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -240078,7 +240078,7 @@ bo:21980 a sybio:EC , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004525"^^xsd:string ; + owl:hasValue "3.1.26.3"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -240090,11 +240090,11 @@ bo:21980 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "bacteriocin"@en , "autolysin"@en , "lysin"@en , "GO:0019835"@en , "lysis"@en , "holin"@en , "cytolysis"@en , "necrosis"@en , "bacteriolytic toxin"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019835"^^xsd:string ; + owl:hasValue "Cytolysis"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cytolysis"^^xsd:string ; + owl:hasValue "GO:0019835"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -240300,11 +240300,11 @@ bo:14815 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "MANC"@en , "E2.7.7.22"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0662"^^xsd:string ; + owl:hasValue "0008928"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008928"^^xsd:string ; + owl:hasValue "COG0662"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -240561,6 +240561,16 @@ bo:15820 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03894+K03895"@en ; tawny:name "15820"@en . +bo:28057 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "fapR_RBS"@en ; + sybio:NA "TGTCCGGATGGTGTTTAGAT"^^xsd:string ; + sybio:begin "1661947"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1661966"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31001 ; + tawny:name "28057"@en . + bo:16474 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "clorobiocin biosynthesis protein CloN7"@en ; rdfs:label "CLON7"@en ; @@ -240574,16 +240584,6 @@ bo:16474 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12724"@en ; tawny:name "16474"@en . -bo:28057 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "fapR_RBS"@en ; - sybio:NA "TGTCCGGATGGTGTTTAGAT"^^xsd:string ; - sybio:begin "1661947"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1661966"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31001 ; - tawny:name "28057"@en . - bo:16562 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphonoacetaldehyde hydrolase [EC:3.11.1.1]"@en ; rdfs:label "PHNX"@en ; @@ -240887,17 +240887,6 @@ bo:21906 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11590 ; tawny:name "21906"@en . -bo:590 a owl:Class ; - rdfs:label "COG2183"@en ; - rdfs:subClassOf bo:223 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2183"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "590"@en . - bo:29062 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU07540"@en ; sybio:accession "BSU07540"^^xsd:string ; @@ -240924,6 +240913,17 @@ bo:1322 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1322"@en . +bo:590 a owl:Class ; + rdfs:label "COG2183"@en ; + rdfs:subClassOf bo:223 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG2183"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "590"@en . + bo:29150 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU00080"@en ; rdfs:label "BSU00080"@en , "yaaC"@en ; @@ -241025,16 +241025,6 @@ bo:4696 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4695 ; tawny:name "4696"@en . -bo:16437 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "novobiocin biosynthesis protein NovR"@en ; - rdfs:label "NOVR"@en ; - sybio:accession "Q9L9F0"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16436 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; - tawny:name "16437"@en . - bo:4784 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "cspB_terminator2"@en ; sybio:NA "ACAAAAAAGCTGTTTTGCATAAGCAAAACAGCTTTTTTTATTAGTTT"^^xsd:string ; @@ -241047,16 +241037,34 @@ bo:4784 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4782 ; tawny:name "4784"@en . +bo:16437 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "novobiocin biosynthesis protein NovR"@en ; + rdfs:label "NOVR"@en ; + sybio:accession "Q9L9F0"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16436 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; + tawny:name "16437"@en . + +bo:4872 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "asnO"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32715 ; + sybio:operonGenes "asnO"@en ; + tawny:name "4872"@en . + bo:16525 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]"@en ; rdfs:label "PHNW"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0075"^^xsd:string ; + owl:hasValue "0047304"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047304"^^xsd:string ; + owl:hasValue "COG0075"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -241064,14 +241072,6 @@ bo:16525 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03430"@en ; tawny:name "16525"@en . -bo:4872 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "asnO"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32715 ; - sybio:operonGenes "asnO"@en ; - tawny:name "4872"@en . - bo:28108 a owl:NamedIndividual , sybio:RBS ; rdfs:label "cotO_RBS"@en ; sybio:NA "GACACAATCGGAGGG"^^xsd:string ; @@ -241082,6 +241082,14 @@ bo:28108 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31269 ; tawny:name "28108"@en . +bo:4960 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "eag"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31095 ; + sybio:operonGenes "eag"@en ; + tawny:name "4960"@en . + bo:16613 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phenylacetaldoxime dehydratase [EC:4.99.1.7]"@en ; rdfs:label "OXDB"@en ; @@ -241092,14 +241100,6 @@ bo:16613 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10566"@en ; tawny:name "16613"@en . -bo:4960 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "eag"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31095 ; - sybio:operonGenes "eag"@en ; - tawny:name "4960"@en . - bo:16701 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "alpha,alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]"@en ; rdfs:label "OTSA"@en , "E2.4.1.15"@en ; @@ -241445,6 +241445,21 @@ bo:553 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "553"@en . +bo:29113 a owl:NamedIndividual , sybio:CDS ; + rdfs:label "BSU28480"@en ; + sybio:accession "BSU28480"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:maxExpressedIn bo:27014 ; + sybio:maxExpression "10.69"^^xsd:string ; + sybio:minExpressedIn bo:27064 ; + sybio:minExpression "5.07"^^xsd:string ; + sybio:unnormalizedMaxExpression + "257.0"@en ; + sybio:unnormalizedMinExpression + "165.0"@en ; + tawny:name "29113"@en . + bo:17530 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]"@en ; rdfs:label "RBCL"@en ; @@ -241474,21 +241489,6 @@ bo:23388 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "23388"@en . -bo:29113 a owl:NamedIndividual , sybio:CDS ; - rdfs:label "BSU28480"@en ; - sybio:accession "BSU28480"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:maxExpressedIn bo:27014 ; - sybio:maxExpression "10.69"^^xsd:string ; - sybio:minExpressedIn bo:27064 ; - sybio:minExpression "5.07"^^xsd:string ; - sybio:unnormalizedMaxExpression - "257.0"@en ; - sybio:unnormalizedMinExpression - "165.0"@en ; - tawny:name "29113"@en . - bo:641 a owl:Class ; rdfs:label "COG0343"@en ; rdfs:subClassOf bo:194 , sybio:COG ; @@ -241623,29 +241623,29 @@ bo:4835 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4834 ; tawny:name "4835"@en . - - a owl:Class ; - rdfs:comment "The intramolecular conversion of uridine to pseudouridine in a tRNA molecule."@en ; - rdfs:label "GO:0031119"@en , "tRNA pseudouridine synthesis"@en ; - rdfs:subClassOf , , sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031119"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + protein-disulfide = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + protein-dithiol. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative way of naming 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate."@en ; rdfs:label "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase"@en , "4-diphosphate synthase"@en , "oxidoreductase"@en , "1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase"@en , "GO:0046429"@en ; rdfs:subClassOf sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.17.4.3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0046429"^^xsd:string ; owl:onProperty sybio:accession ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + + + a owl:Class ; + rdfs:comment "The intramolecular conversion of uridine to pseudouridine in a tRNA molecule."@en ; + rdfs:label "GO:0031119"@en , "tRNA pseudouridine synthesis"@en ; + rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.17.4.3"^^xsd:string ; + owl:hasValue "GO:0031119"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -241894,11 +241894,11 @@ bo:10938 a bo:211 , bo:209 , sybio:Protein , owl:NamedIndi owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.-.-.-"^^xsd:string ; + owl:hasValue "450 \"hydrolase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "450 \"hydrolase activity\""^^xsd:string ; + owl:hasValue "3.-.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -242073,6 +242073,21 @@ bo:30479 a owl:NamedIndividual , sybio:CDS ; "7.0"@en ; tawny:name "30479"@en . +bo:11679 a owl:Class , sybio:Pathway , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00624.png"@en ; + rdfs:label "1- and 2-Methylnaphthalene degradation"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00624"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:derivesFrom bo:11680 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00624"@en ; + tawny:name "11679"@en . + bo:26989 a bo:680 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Phosphoribosylaminoimidazole-succinocarboxamide synthase;derived protein"@en , "phosphoribosylaminoimidazole succinocarboxamide synthetase;BSU06450;"@en ; rdfs:label "BSU06450"@en , "purC"@en , "PurC"@en ; @@ -242092,21 +242107,6 @@ bo:26989 a bo:680 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26989"@en . -bo:11679 a owl:Class , sybio:Pathway , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00624.png"@en ; - rdfs:label "1- and 2-Methylnaphthalene degradation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00624"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11680 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00624"@en ; - tawny:name "11679"@en . - bo:18058 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "light-independent protochlorophyllide reductase subunit B[EC:1.18.-.-]"@en ; rdfs:label "CHLB"@en ; @@ -242281,11 +242281,11 @@ bo:18322 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "GLTS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0067"^^xsd:string ; + owl:hasValue "0016041"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016041"^^xsd:string ; + owl:hasValue "COG0067"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -242527,11 +242527,11 @@ bo:19063 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "RFAD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008712"^^xsd:string ; + owl:hasValue "COG0451"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0451"^^xsd:string ; + owl:hasValue "0008712"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -242658,6 +242658,18 @@ bo:25273 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11743 ; tawny:name "25273"@en . +bo:25361 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.1.1.68"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.1.1.68"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25361"@en . + bo:10051 a sybio:Protein , bo:486 , owl:NamedIndividual , bo:890 ; rdfs:comment "Putative esterase yitV;"@en , "BSU11150;putative hydrolase"@en ; rdfs:label "BSU11150"@en , "yitV"@en , "YitV"@en ; @@ -242676,18 +242688,6 @@ bo:10051 a sybio:Protein , bo:486 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10051"@en . -bo:25361 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.1.1.68"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.68"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25361"@en . - bo:6368 a owl:NamedIndividual , sybio:Operon ; rdfs:label "yusMLKJ"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -242705,7 +242705,7 @@ bo:18109 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046025"^^xsd:string ; + owl:hasValue "0016491"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -242713,7 +242713,7 @@ bo:18109 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016491"^^xsd:string ; + owl:hasValue "0046025"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -242903,16 +242903,6 @@ bo:31359 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "31359"@en . -bo:27869 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "ohrB_RBS_upstream"@en ; - sybio:NA "C"^^xsd:string ; - sybio:begin "1381999"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1381999"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27868 ; - tawny:name "27869"@en . - bo:12559 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "NO"@en ; rdfs:label "NO"@en , "Nitric oxide"@en , "Nitrogen monoxide"@en ; @@ -242924,6 +242914,16 @@ bo:12559 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00533"@en ; tawny:name "12559"@en . +bo:27869 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "ohrB_RBS_upstream"@en ; + sybio:NA "C"^^xsd:string ; + sybio:begin "1381999"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1381999"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27868 ; + tawny:name "27869"@en . + bo:7285 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Intracellular serine protease"@en ; rdfs:label "Q4U4W9"@en ; @@ -243907,15 +243907,15 @@ bo:13527 a owl:NamedIndividual , sybio:Compound ; rdfs:label "asparagine synthase (glutamine-hydrolyzing)"@en , "GO:0004066"@en , "glutamine-dependent asparagine synthetase"@en , "asparagine synthetase"@en , "AS-B"@en , "asparagine synthase"@en , "L-aspartate:L-glutamine amido-ligase"@en , "AS"@en , "asparagine synthetase B"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASNSYNB-RXN"^^xsd:string ; + owl:hasValue "6.3.5.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7213 \"asparagine synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; + owl:hasValue "ASNSYNB-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.4"^^xsd:string ; + owl:hasValue "7213 \"asparagine synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -244177,11 +244177,11 @@ bo:17995 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MTRG"@en , "E2.1.1.86G"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4064"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4064"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -244428,6 +244428,12 @@ bo:27033 a owl:NamedIndividual , sybio:MicroarrayExperimen sybio:targetExperiment "strain: BFS2466/pDG148-yvqC (trpC2 yvqE::pMUTIN2(Emr)/pDG148-yvqC),\nmedium: LB+1mM IPTG, temperature: 37 deg C,\nharvest point: OD600=0.45, middle logarithmic phase"@en ; tawny:name "27033"@en . +bo:27121 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigG_sspA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27121"@en . + bo:21396 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "oxygen oxidoreductase"@en , "3,7-dimethylxanthine"@en , "cpd:C07480 => cpd:C07480"@en , "C07480 + C00001 + C00007 <=> C16360 + C00027"@en ; @@ -244439,12 +244445,6 @@ bo:21396 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11576 ; tawny:name "21396"@en . -bo:27121 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigG_sspA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27121"@en . - bo:21484 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "Deoxycytidine aminohydrolase"@en , "C00881 + C00001 <=> C00526 + C00014"@en , "cpd:C00881 => cpd:C00881"@en ; @@ -244460,18 +244460,14 @@ bo:21484 a owl:NamedIndividual , sybio:Reaction ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+."@en ; - rdfs:label "aldehyde:NAD+ oxidoreductase"@en , "m-methylbenzaldehyde dehydrogenase"@en , "aldehyde dehydrogenase"@en , "NAD-linked aldehyde dehydrogenase"@en , "aldehyde dehydrogenase (NAD)"@en , "NAD-dependent aldehyde dehydrogenase"@en , "CoA-independent aldehyde dehydrogenase"@en , "propionaldehyde dehydrogenase"@en , "NAD-dependent 4-hydroxynonenal dehydrogenase"@en , "NAD-aldehyde dehydrogenase"@en , "GO:0004029"@en ; + rdfs:label "aldehyde:NAD+ oxidoreductase"@en , "m-methylbenzaldehyde dehydrogenase"@en , "aldehyde dehydrogenase"@en , "NAD-linked aldehyde dehydrogenase"@en , "aldehyde dehydrogenase (NAD)"@en , "propionaldehyde dehydrogenase"@en , "NAD-dependent aldehyde dehydrogenase"@en , "CoA-independent aldehyde dehydrogenase"@en , "NAD-dependent 4-hydroxynonenal dehydrogenase"@en , "NAD-aldehyde dehydrogenase"@en , "GO:0004029"@en ; rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALDHDEHYDROG-RXN"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "Aldehyde_dehydrogenase_(NAD+)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.3"^^xsd:string ; + owl:hasValue "7097 \"aldehyde dehydrogenase (NAD) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -244483,7 +244479,11 @@ bo:21484 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7097 \"aldehyde dehydrogenase (NAD) activity\""^^xsd:string ; + owl:hasValue "ALDHDEHYDROG-RXN"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.1.3"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -244597,11 +244597,11 @@ bo:15361 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "ADK"@en , "E2.7.1.20"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0524"^^xsd:string ; + owl:hasValue "0004001"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004001"^^xsd:string ; + owl:hasValue "COG0524"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -244965,11 +244965,11 @@ bo:18875 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.7"^^xsd:string ; + owl:hasValue "GO:0008760"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008760"^^xsd:string ; + owl:hasValue "2.5.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -245066,11 +245066,11 @@ bo:15412 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E3.5.1.6"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0624"^^xsd:string ; + owl:hasValue "0003837"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003837"^^xsd:string ; + owl:hasValue "COG0624"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -245285,11 +245285,11 @@ bo:16153 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E4.1.3.39"@en , "MHPE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008701"^^xsd:string ; + owl:hasValue "COG0119"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0119"^^xsd:string ; + owl:hasValue "0008701"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -245371,27 +245371,27 @@ bo:10780 a bo:506 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10780"@en . -bo:270 a owl:Class ; - rdfs:label "COG0294"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:1002 a owl:Class ; + rdfs:label "COG1791"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0294"^^xsd:string ; + owl:hasValue "COG1791"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "270"@en . + tawny:name "1002"@en . -bo:1002 a owl:Class ; - rdfs:label "COG1791"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:270 a owl:Class ; + rdfs:label "COG0294"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1791"^^xsd:string ; + owl:hasValue "COG0294"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1002"@en . + tawny:name "270"@en . bo:18838 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "phosphatidylinositol glycan, class B [EC:2.4.1.-]"@en ; @@ -245679,6 +245679,18 @@ bo:10479 a bo:1502 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10479"@en . +bo:25877 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "5.4.99.7"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "5.4.99.7"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25877"@en . + bo:10567 a sybio:Protein , owl:NamedIndividual , bo:1795 ; rdfs:comment "Stage II sporulation protein D"@en , "autolysin required for complete dissolution of the asymmetric septum (stage II sporulation);BSU36750"@en ; rdfs:label "spoIID"@en , "BSU36750"@en , "SpoIIC"@en , "SpoIID"@en ; @@ -245696,18 +245708,6 @@ bo:10567 a sybio:Protein , owl:NamedIndividual , bo:1795 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10567"@en . -bo:25877 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "5.4.99.7"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.99.7"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25877"@en . - bo:5293 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "spoVAABCDEF-lysA_terminator"@en ; sybio:NA "AGAAACGCCGATTTTTCGGCGCTTTTCTTATTTGAAT"^^xsd:string ; @@ -245718,6 +245718,18 @@ bo:5293 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5292 ; tawny:name "5293"@en . +bo:25965 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.1.1.122"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.1.1.122"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25965"@en . + bo:10655 a bo:428 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "transcriptional regulator (GntR family);BSU07820;"@en , "Trehalose operon transcriptional repressor"@en ; rdfs:label "treR"@en , "TreR"@en , "YfxA"@en , "BSU07820"@en ; @@ -245738,18 +245750,6 @@ bo:10655 a bo:428 , owl:NamedIndividual , sybio:Protein ; tawny:name "10655"@en ; owl:sameAs bo:6634 . -bo:25965 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.1.1.122"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.122"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25965"@en . - bo:17034 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "malonate-semialdehyde dehydrogenase (acetylating) [EC:1.2.1.18]"@en ; rdfs:label "E1.2.1.18"@en ; @@ -245798,11 +245798,11 @@ bo:17122 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E1.1.3.21"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004369"^^xsd:string ; + owl:hasValue "COG0578"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0578"^^xsd:string ; + owl:hasValue "0004369"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -245881,11 +245881,11 @@ bo:321 a owl:Class ; rdfs:label "GO:0047151"@en , "methylenetetrahydrofolate-transfer ribonucleate uracil 5-methyltransferase"@en , "methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing)"@en , "activity"@en , "5 10-methylenetetrahydrofolate:tRNA"@en , "5 10-methylenetetrahydrofolate:tRNA-UPsiC"@en , "folate-dependent ribothymidyl synthase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.74"^^xsd:string ; + owl:hasValue "2.1.1.74-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.74-RXN"^^xsd:string ; + owl:hasValue "2.1.1.74"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -246042,23 +246042,6 @@ bo:30284 a owl:NamedIndividual , sybio:CDS ; "10.0"@en ; tawny:name "30284"@en . -bo:11484 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Type-2 restriction enzyme BsuMI component ydjA"@en , "BSU06110;BsuM intrinsic DNA restriction component"@en ; - rdfs:label "YdjA"@en , "BSU06110"@en , "ydjA"@en ; - sybio:AA "MDKSSKFFFEDQKYNKERIVRVLGGNLALLKSKGILYEDSSGDLIFNYVGVISNGRNVIFILPKYCNRHLDEHSKRTLFNKLLKIFKKYSGLNKSRESDYFVSELDSDEVSDFMIADYLLNDFSLNGYYQKKFTEYEIDGEGIIDWSKTVNEITPVFSKGVPYYFSTYNEVVQKDEYHLIVKIHKWALSKYFNDFGVILGFTGLEFDKSCDGMKILDYADFFGSVINKEIVNTYVDRDVKLLKALKTAIDREENQFSKRPTLSLYGTKYFHRVWEEVCKTVFSHVNEYVKKISRPNWINFTDIEVNKEKKTLEPDIIKAFEYRSKEYFLILDAKYYNINFDGKKLEGNPGVEDITKQLLYDKALEKLSRGKTKHNAFLFPSSNSTNTFKVFGSVDFDFLDIAAVTLVYISAEQVYNLYLENKTFSTDDLFKFVSEINKSKKRHSVITSTLYGNMFLFTKRLSDKN"@en ; - sybio:accession "O34303"^^xsd:string , "BSU06110"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30989 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "54333.87"^^xsd:string ; - sybio:pI "8.314903"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11484"@en . - bo:26794 a sybio:Protein , owl:NamedIndividual , bo:1830 , bo:1149 ; rdfs:comment "ATP synthase subunit alpha;derived protein"@en , "BSU36830;ATP synthase (subunit alpha, component F1)"@en ; rdfs:label "atpA"@en , "BSU36830"@en , "AtpA"@en ; @@ -246080,20 +246063,22 @@ bo:26794 a sybio:Protein , owl:NamedIndividual , bo:1830 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26794"@en . -bo:11572 a owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00190.png"@en ; - rdfs:label "Oxidative phosphorylation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00190"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11573 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00190"@en ; - tawny:name "11572"@en . +bo:11484 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Type-2 restriction enzyme BsuMI component ydjA"@en , "BSU06110;BsuM intrinsic DNA restriction component"@en ; + rdfs:label "YdjA"@en , "BSU06110"@en , "ydjA"@en ; + sybio:AA "MDKSSKFFFEDQKYNKERIVRVLGGNLALLKSKGILYEDSSGDLIFNYVGVISNGRNVIFILPKYCNRHLDEHSKRTLFNKLLKIFKKYSGLNKSRESDYFVSELDSDEVSDFMIADYLLNDFSLNGYYQKKFTEYEIDGEGIIDWSKTVNEITPVFSKGVPYYFSTYNEVVQKDEYHLIVKIHKWALSKYFNDFGVILGFTGLEFDKSCDGMKILDYADFFGSVINKEIVNTYVDRDVKLLKALKTAIDREENQFSKRPTLSLYGTKYFHRVWEEVCKTVFSHVNEYVKKISRPNWINFTDIEVNKEKKTLEPDIIKAFEYRSKEYFLILDAKYYNINFDGKKLEGNPGVEDITKQLLYDKALEKLSRGKTKHNAFLFPSSNSTNTFKVFGSVDFDFLDIAAVTLVYISAEQVYNLYLENKTFSTDDLFKFVSEINKSKKRHSVITSTLYGNMFLFTKRLSDKN"@en ; + sybio:accession "O34303"^^xsd:string , "BSU06110"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30989 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "54333.87"^^xsd:string ; + sybio:pI "8.314903"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11484"@en . a owl:NamedIndividual , owl:Class , sybio:CellularComponent ; @@ -246152,21 +246137,20 @@ bo:26882 a bo:226 , bo:225 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "26882"@en . -bo:11660 a owl:NamedIndividual , sybio:Pathway , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00561.png"@en ; - rdfs:label "Glycerolipid metabolism"@en ; +bo:11572 a owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00190.png"@en ; + rdfs:label "Oxidative phosphorylation"@en ; rdfs:subClassOf sybio:Pathway ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00561"^^xsd:string ; + owl:hasValue "BSU00190"^^xsd:string ; owl:onProperty sybio:accession ] ; - sybio:adjacentTo bo:11565 , bo:11664 ; - sybio:derivesFrom bo:11661 ; + sybio:derivesFrom bo:11573 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00561"@en ; - tawny:name "11660"@en . + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00190"@en ; + tawny:name "11572"@en . bo:30460 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32720;"@en ; @@ -246193,6 +246177,22 @@ bo:30460 a sybio:CDS , owl:NamedIndividual ; "1270.0"@en ; tawny:name "30460"@en . +bo:11660 a owl:NamedIndividual , sybio:Pathway , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00561.png"@en ; + rdfs:label "Glycerolipid metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00561"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11565 , bo:11664 ; + sybio:derivesFrom bo:11661 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00561"@en ; + tawny:name "11660"@en . + bo:26970 a bo:797 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Vegetative catalase;Catalase;derived protein"@en , "BSU08820;vegetative catalase 1"@en ; rdfs:label "KatA"@en , "Kat-19"@en , "katA"@en , "BSU08820"@en ; @@ -246223,19 +246223,19 @@ bo:26970 a bo:797 , owl:NamedIndividual , sybio:Protein ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046913"^^xsd:string ; + owl:hasValue "2.3.3.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5172"^^xsd:string ; + owl:hasValue "GO:0003878"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003878"^^xsd:string ; + owl:hasValue "PWY-5172"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.3.8"^^xsd:string ; + owl:hasValue "GO:0046913"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -247037,16 +247037,6 @@ bo:31340 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "31340"@en . -bo:27850 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "spoVFA_RBS_upstream"@en ; - sybio:NA "CAACTAGAGATCCAGTATATAC"^^xsd:string ; - sybio:begin "1744325"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1744346"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27849 ; - tawny:name "27850"@en . - bo:12540 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C16H21N3O8S"@en ; rdfs:label "Cephalosporin C"@en , "C16H21N3O8S"@en ; @@ -247058,17 +247048,27 @@ bo:12540 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00916"@en ; tawny:name "12540"@en . +bo:27850 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "spoVFA_RBS_upstream"@en ; + sybio:NA "CAACTAGAGATCCAGTATATAC"^^xsd:string ; + sybio:begin "1744325"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1744346"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27849 ; + tawny:name "27850"@en . + a owl:Class ; rdfs:comment "A process whereby a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient."@en ; rdfs:label "respiratory electron transport chain"@en , "other pathways of electron transport"@en , "6-phosphofructokinase reduction"@en , "GO:0022904"@en , "dihydrolipoylprotein reduction"@en , "dihydropteridine reduction"@en , "oxidized glutathione reduction"@en , "protein-disulfide reduction"@en , "dihydrolipoamide reduction"@en , "electron transfer"@en , "dihydrobiopterin reduction"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0022904"^^xsd:string ; + owl:hasValue "Electron_transfer"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Electron_transfer"^^xsd:string ; + owl:hasValue "GO:0022904"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -247084,7 +247084,7 @@ bo:12540 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "URATE-OXIDASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004846"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -247092,7 +247092,7 @@ bo:12540 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004846"^^xsd:string ; + owl:hasValue "URATE-OXIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -247597,11 +247597,11 @@ bo:15877 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "CEFG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033813"^^xsd:string ; + owl:hasValue "P39058"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P39058"^^xsd:string ; + owl:hasValue "0033813"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -247624,11 +247624,11 @@ bo:16795 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.5.1.41"@en , "CDA1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0726"^^xsd:string ; + owl:hasValue "0004099"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004099"^^xsd:string ; + owl:hasValue "COG0726"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -248162,11 +248162,11 @@ bo:15928 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.4.11.5"@en , "PIP"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0596"^^xsd:string ; + owl:hasValue "0016804"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016804"^^xsd:string ; + owl:hasValue "COG0596"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -248180,11 +248180,11 @@ bo:15928 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "methionine metabolism"@en , "methionine and threonine metabolism"@en , "GO:0006555"@en , "methionine and threonine metabolic process"@en , "methionine metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "met"^^xsd:string ; + owl:hasValue "GO:0006555"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006555"^^xsd:string ; + owl:hasValue "met"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -248453,11 +248453,11 @@ bo:17587 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "ABMG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0365"^^xsd:string ; + owl:hasValue "0018860"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018860"^^xsd:string ; + owl:hasValue "COG0365"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -248611,11 +248611,11 @@ bo:17851 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "APHA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3700"^^xsd:string ; + owl:hasValue "0003993"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003993"^^xsd:string ; + owl:hasValue "COG3700"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -249237,7 +249237,7 @@ bo:21127 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "7-methylguanine transfer ribonucleate methylase"@en , "tRNA (guanine-N7-)-methyltransferase"@en , "N7-methylguanine methylase"@en , "GO:0008176"@en , "S-adenosyl-L-methionine:tRNA"@en , "tRNA guanine 7-methyltransferase"@en , "transfer ribonucleate guanine 7-methyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.33"^^xsd:string ; + owl:hasValue "GO:0008176"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -249245,7 +249245,7 @@ bo:21127 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008176"^^xsd:string ; + owl:hasValue "2.1.1.33"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -249413,11 +249413,11 @@ bo:15004 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E4.1.2.20"@en , "GARL"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008672"^^xsd:string ; + owl:hasValue "COG3836"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3836"^^xsd:string ; + owl:hasValue "0008672"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -249724,6 +249724,17 @@ bo:10196 a sybio:Protein , owl:NamedIndividual , bo:1278 , sybio:taxId "[224308, 1423]"@en ; tawny:name "10196"@en . +bo:25594 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase(glycerone-phosphate-forming)"@en , "C00354 <=> C00111 + C00118"@en , "cpd:C00354 <=> cpd:C00354"@en ; + sybio:accession "RN:R01068"^^xsd:string ; + sybio:catalyzedBy bo:20244 ; + sybio:catalyzingClass bo:20245 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25594"@en . + bo:10284 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein yqzJ"@en , "hypothetical protein;BSU23880"@en ; rdfs:label "BSU23880"@en , "yqzJ"@en , "YqzJ"@en ; @@ -249741,16 +249752,15 @@ bo:10284 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10284"@en . -bo:25594 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase(glycerone-phosphate-forming)"@en , "C00354 <=> C00111 + C00118"@en , "cpd:C00354 <=> cpd:C00354"@en ; - sybio:accession "RN:R01068"^^xsd:string ; - sybio:catalyzedBy bo:20244 ; - sybio:catalyzingClass bo:20245 ; +bo:25682 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label "C00024 + G13037 <=> C00010 + G13038"@en , "heparan-alpha-D-glucosaminide N-acetyltransferase"@en , " => "@en , "acetyl-CoA"@en ; + sybio:accession "RN:R07815"^^xsd:string ; + sybio:catalyzingClass bo:25683 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25594"@en . + tawny:name "25682"@en . bo:10372 a sybio:Protein , bo:211 , owl:NamedIndividual , bo:200 ; rdfs:comment "BSU28110;morphogenetic spore protein (stage VI sporulation)"@en , "Stage VI sporulation protein D"@en ; @@ -249769,16 +249779,6 @@ bo:10372 a sybio:Protein , bo:211 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10372"@en . -bo:25682 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label "C00024 + G13037 <=> C00010 + G13038"@en , "heparan-alpha-D-glucosaminide N-acetyltransferase"@en , " => "@en , "acetyl-CoA"@en ; - sybio:accession "RN:R07815"^^xsd:string ; - sybio:catalyzingClass bo:25683 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25682"@en . - bo:6689 a sybio:TF , owl:NamedIndividual ; rdfs:comment "putative transcriptional regulator (LysR family);"@en ; rdfs:label "BSU26870"@en , "YraN"@en ; @@ -249788,6 +249788,17 @@ bo:6689 a sybio:TF , owl:NamedIndividual ; sybio:tfDomain "HTH_1,LysR_substrate"^^xsd:string ; tawny:name "6689"@en . +bo:25770 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "G10609 + G00044 <=> G10619 + G00039"@en , "gl:G00044 <=> gl:G00044"@en ; + sybio:accession "RN:R06168"^^xsd:string ; + sybio:catalyzedBy bo:18736 ; + sybio:catalyzingClass bo:25372 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25770"@en . + bo:10460 a bo:1689 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU32020;putative sulfite oxidase"@en , "Putative sulfite oxidase"@en ; rdfs:label "yuiH"@en , "YuiH"@en , "BSU32020"@en ; @@ -249806,17 +249817,6 @@ bo:10460 a bo:1689 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10460"@en . -bo:25770 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "G10609 + G00044 <=> G10619 + G00039"@en , "gl:G00044 <=> gl:G00044"@en ; - sybio:accession "RN:R06168"^^xsd:string ; - sybio:catalyzedBy bo:18736 ; - sybio:catalyzingClass bo:25372 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25770"@en . - bo:6777 a bo:320 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU34100;regulator of RsbP phosphatase;"@en ; rdfs:label "YvfQ"@en , "BSU34100"@en , "RsbQ"@en ; @@ -249948,11 +249948,11 @@ bo:24728 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:label "nonselective channel"@en , "channel pore class transporter"@en , "alpha-type channel"@en , "GO:0015267"@en , "channel-forming toxin"@en , "pore class transporter"@en , "channel"@en , "pore"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1"^^xsd:string ; + owl:hasValue "GO:0015268"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015268"^^xsd:string ; + owl:hasValue "GO:0015267"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -249960,7 +249960,7 @@ bo:24728 a owl:NamedIndividual , sybio:EC , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015267"^^xsd:string ; + owl:hasValue "1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -250576,6 +250576,26 @@ bo:26298 a sybio:Protein , owl:NamedIndividual , bo:701 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26298"@en . +bo:26386 a owl:NamedIndividual , sybio:Protein , bo:1225 ; + rdfs:comment "Xylose isomerase;derived protein"@en , "BSU17600;xylose isomerase"@en ; + rdfs:label "XylA"@en , "xylA"@en , "BSU17600"@en ; + sybio:AA "MAQSHSSSINYFGSANKVVYEGKDSTNPLAFKYYNPQEVIGGKTLKEHLRFSIAYWHTFTADGTDVFGAATMQRPWDHYKGMDLAKMRVEAAFEMFEKLDAPFFAFHDRDIAPEGSTLKETNQNLDMIMGMIKDYMRNSGVKLLWNTANMFTNPRFVHGAATSCNADVFAYAAAQVKKGLETAKELGAENYVFWGGREGYETLLNTDLKFELDNLARFMHMAVDYAKEIGYTGQFLIEPKPKEPTTHQYDTDAATTIAFLKQYGLDNHFKLNLEANHATLAGHTFEHELRMARVHGLLGSVDANQGHPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNFDAKVRRSSFEPDDLIYAHIAGMDAFARGLKVAHKLIEDRVFEDVIQHRYRSFTEGIGLEIIEGRANFHTLEQYALNHKSIKNESGRQEKLKAILNQYILEV"@en ; + sybio:accession "P04788"^^xsd:string , "939558"^^xsd:string , "BSU17600"^^xsd:string , "255767417"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32607 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "50279.78"^^xsd:string ; + sybio:pI "5.749825"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26387 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26386"@en . + bo:11076 a owl:NamedIndividual , sybio:Protein , bo:1787 ; rdfs:comment "Negative regulator of flagellin synthesis"@en , "BSU35430;anti-sigma factor repressor of sigma(D)-dependent transcription"@en ; rdfs:label "flgM"@en , "BSU35430"@en , "FlgM"@en ; @@ -250596,25 +250616,24 @@ bo:11076 a owl:NamedIndividual , sybio:Protein , bo:1787 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11076"@en . -bo:26386 a owl:NamedIndividual , sybio:Protein , bo:1225 ; - rdfs:comment "Xylose isomerase;derived protein"@en , "BSU17600;xylose isomerase"@en ; - rdfs:label "XylA"@en , "xylA"@en , "BSU17600"@en ; - sybio:AA "MAQSHSSSINYFGSANKVVYEGKDSTNPLAFKYYNPQEVIGGKTLKEHLRFSIAYWHTFTADGTDVFGAATMQRPWDHYKGMDLAKMRVEAAFEMFEKLDAPFFAFHDRDIAPEGSTLKETNQNLDMIMGMIKDYMRNSGVKLLWNTANMFTNPRFVHGAATSCNADVFAYAAAQVKKGLETAKELGAENYVFWGGREGYETLLNTDLKFELDNLARFMHMAVDYAKEIGYTGQFLIEPKPKEPTTHQYDTDAATTIAFLKQYGLDNHFKLNLEANHATLAGHTFEHELRMARVHGLLGSVDANQGHPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNFDAKVRRSSFEPDDLIYAHIAGMDAFARGLKVAHKLIEDRVFEDVIQHRYRSFTEGIGLEIIEGRANFHTLEQYALNHKSIKNESGRQEKLKAILNQYILEV"@en ; - sybio:accession "P04788"^^xsd:string , "939558"^^xsd:string , "BSU17600"^^xsd:string , "255767417"^^xsd:string ; +bo:26474 a sybio:Protein , bo:1374 , owl:NamedIndividual ; + rdfs:comment "cryptic glutamate dehydrogenase;BSU22960"@en , "Glutamate dehydrogenase;NAD-specific glutamate dehydrogenase;;derived protein"@en ; + rdfs:label "YpcA"@en , "GudB"@en , "BSU22960"@en , "gudB"@en ; + sybio:AA "MAADRNTGHTEEDKLDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRAQHNDSVGPTKGGIRFHPNVTEKEVKAVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRGWI"@en ; + sybio:accession "P50735"^^xsd:string , "A3F467"^^xsd:string , "BSU22960"^^xsd:string , "A3F460"^^xsd:string , "255767494"^^xsd:string , "A3F461"^^xsd:string , "938975"^^xsd:string , "A3F464"^^xsd:string ; sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32607 ; + sybio:encodedBy bo:32545 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:hasFunction , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "50279.78"^^xsd:string ; - sybio:pI "5.749825"^^xsd:string ; + sybio:molecularWeight "47338.26"^^xsd:string ; + sybio:pI "5.688087"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26387 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26386"@en . + sybio:relatedTo bo:26821 , bo:26572 , bo:26822 , bo:26530 ; + sybio:taxId "224308"@en ; + tawny:name "26474"@en . bo:11164 a bo:356 , owl:NamedIndividual , bo:353 , bo:1887 , sybio:Protein , bo:769 ; rdfs:comment "ABC membrane transporter (ATP-binding protein) required for cytochrome bd function;BSU38740"@en , "ATP-binding/permease protein cydC"@en ; @@ -250637,40 +250656,21 @@ bo:11164 a bo:356 , owl:NamedIndividual , bo:353 , bo:1887 sybio:taxId "[224308, 1423]"@en ; tawny:name "11164"@en . -bo:26474 a sybio:Protein , bo:1374 , owl:NamedIndividual ; - rdfs:comment "cryptic glutamate dehydrogenase;BSU22960"@en , "Glutamate dehydrogenase;NAD-specific glutamate dehydrogenase;;derived protein"@en ; - rdfs:label "YpcA"@en , "GudB"@en , "BSU22960"@en , "gudB"@en ; - sybio:AA "MAADRNTGHTEEDKLDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRAQHNDSVGPTKGGIRFHPNVTEKEVKAVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRGWI"@en ; - sybio:accession "P50735"^^xsd:string , "A3F467"^^xsd:string , "BSU22960"^^xsd:string , "A3F460"^^xsd:string , "255767494"^^xsd:string , "A3F461"^^xsd:string , "938975"^^xsd:string , "A3F464"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32545 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "47338.26"^^xsd:string ; - sybio:pI "5.688087"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26821 , bo:26572 , bo:26822 , bo:26530 ; - sybio:taxId "224308"@en ; - tawny:name "26474"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine."@en ; rdfs:label "transfer ribonucleate guanine 1-methyltransferase"@en , "S-adenosyl-L-methionine:tRNA"@en , "tRNA guanine 1-methyltransferase"@en , "tRNA (guanine-N1-)-methyltransferase"@en , "GO:0009019"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRNA-GUANINE-N1--METHYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "2.1.1.31"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.31"^^xsd:string ; + owl:hasValue "GO:0009019"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009019"^^xsd:string ; + owl:hasValue "TRNA-GUANINE-N1--METHYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -250701,6 +250701,25 @@ bo:30052 a owl:NamedIndividual , sybio:CDS ; "1.0"@en ; tawny:name "30052"@en . +bo:26562 a sybio:Protein , owl:NamedIndividual , bo:1563 ; + rdfs:comment "porphobilinogen deaminase (hydroxymethylbilane synthase);BSU28150"@en , "Porphobilinogen deaminase;derived protein"@en ; + rdfs:label "hemC"@en , "HemC"@en , "BSU28150"@en ; + sybio:AA "MMRTIKVGSRRSKLAMTQTKWVIQKLKEINPSFAFEIKEIVTKGDRIVDVTLSKVGGKGLFVKEIEQALLNEEIDMAVHSMKDMPAVLPEGLVIGCIPEREDPRDALISKNRVKLSEMKKGAVIGTSSLRRSAQLLIERPDLTIKWIRGNIDTRLQKLETEDYDAIILAAAGLSRMGWKQDVVTEFLEPERCLPAVGQGALAIECRESDEELLALFSQFTDEYTKRTVLAERAFLNAMEGGCQVPIAGYSVLNGQDEIEMTGLVASPDGKIIFKETVTGNDPEEVGKRCAALMADKGAKDLIDRVKRELDEDGK"@en ; + sybio:accession "P16616"^^xsd:string , "BSU28150"^^xsd:string , "937488"^^xsd:string , "16079867"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:29020 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "34836.955"^^xsd:string ; + sybio:pI "5.280602"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:9720 , bo:26563 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26562"@en . + bo:11252 a bo:174 , bo:263 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Cell division protease ftsH homolog"@en , "BSU00690;cell-division protein and general stress protein (class III heat-shock)"@en ; rdfs:label "BSU00690"@en , "FtsH"@en , "ftsH"@en ; @@ -250721,25 +250740,6 @@ bo:11252 a bo:174 , bo:263 , owl:NamedIndividual , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "11252"@en . -bo:26562 a sybio:Protein , owl:NamedIndividual , bo:1563 ; - rdfs:comment "porphobilinogen deaminase (hydroxymethylbilane synthase);BSU28150"@en , "Porphobilinogen deaminase;derived protein"@en ; - rdfs:label "hemC"@en , "HemC"@en , "BSU28150"@en ; - sybio:AA "MMRTIKVGSRRSKLAMTQTKWVIQKLKEINPSFAFEIKEIVTKGDRIVDVTLSKVGGKGLFVKEIEQALLNEEIDMAVHSMKDMPAVLPEGLVIGCIPEREDPRDALISKNRVKLSEMKKGAVIGTSSLRRSAQLLIERPDLTIKWIRGNIDTRLQKLETEDYDAIILAAAGLSRMGWKQDVVTEFLEPERCLPAVGQGALAIECRESDEELLALFSQFTDEYTKRTVLAERAFLNAMEGGCQVPIAGYSVLNGQDEIEMTGLVASPDGKIIFKETVTGNDPEEVGKRCAALMADKGAKDLIDRVKRELDEDGK"@en ; - sybio:accession "P16616"^^xsd:string , "BSU28150"^^xsd:string , "937488"^^xsd:string , "16079867"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:29020 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "34836.955"^^xsd:string ; - sybio:pI "5.280602"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:9720 , bo:26563 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26562"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid."@en ; @@ -250872,10 +250872,10 @@ bo:31907 a sybio:CDS , owl:NamedIndividual ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m)."@en ; - rdfs:label "ligase"@en , "DNA repair enzyme"@en , "deoxyribonucleate ligase"@en , "GO:0003910"@en , "polynucleotide ligase"@en , "deoxyribonucleic acid joinase"@en , "polydeoxyribonucleotide synthase"@en , "deoxyribonucleic repair enzyme"@en , "deoxyribonucleic acid repair enzyme"@en , "deoxyribonucleic-joining enzyme"@en , "DNA ligase (ATP)"@en , "deoxyribonucleic acid ligase"@en , "sealase"@en , "deoxyribonucleic ligase"@en , "deoxyribonucleic joinase"@en , "DNA joinase"@en , "deoxyribonucleic acid-joining enzyme"@en , "DNA-joining enzyme"@en ; + rdfs:label "ligase"@en , "DNA repair enzyme"@en , "deoxyribonucleate ligase"@en , "GO:0003910"@en , "deoxyribonucleic acid joinase"@en , "polynucleotide ligase"@en , "polydeoxyribonucleotide synthase"@en , "deoxyribonucleic repair enzyme"@en , "deoxyribonucleic acid repair enzyme"@en , "deoxyribonucleic-joining enzyme"@en , "DNA ligase (ATP)"@en , "deoxyribonucleic acid ligase"@en , "sealase"@en , "deoxyribonucleic ligase"@en , "deoxyribonucleic joinase"@en , "DNA joinase"@en , "deoxyribonucleic acid-joining enzyme"@en , "DNA-joining enzyme"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003910"^^xsd:string ; + owl:hasValue "DNA-LIGASE-ATP-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -250883,7 +250883,7 @@ bo:31907 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA-LIGASE-ATP-RXN"^^xsd:string ; + owl:hasValue "GO:0003910"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -251403,11 +251403,11 @@ bo:14677 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PDC"@en , "E4.1.1.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0028"^^xsd:string ; + owl:hasValue "0004737"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004737"^^xsd:string ; + owl:hasValue "COG0028"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -251459,11 +251459,11 @@ bo:14941 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GATD"@en , "E1.1.1.251"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1063"^^xsd:string ; + owl:hasValue "0008868"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008868"^^xsd:string ; + owl:hasValue "COG1063"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -251587,19 +251587,19 @@ bo:21981 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "tRNA 5' leader endonuclease"@en , "RNase P"@en , "ribonuclease P"@en , "GO:0004526"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.5-RXN"^^xsd:string ; + owl:hasValue "RNase_P"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004526"^^xsd:string ; + owl:hasValue "3.1.26.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.5"^^xsd:string ; + owl:hasValue "GO:0004526"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RNase_P"^^xsd:string ; + owl:hasValue "3.1.26.5-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -251636,19 +251636,19 @@ bo:2988 a sybio:SigAPromoter , sybio:Promoter , owl:Named rdfs:label "phosphoglucose mutase"@en , "alpha-D-glucose 1 6-phosphomutase"@en , "glucose phosphomutase"@en , "phosphoglucomutase"@en , "GO:0004614"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13266 \"phosphoglucomutase activity\""^^xsd:string ; + owl:hasValue "5.4.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSPHOGLUCMUT-RXN"^^xsd:string ; + owl:hasValue "13266 \"phosphoglucomutase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.2.2"^^xsd:string ; + owl:hasValue "GO:0004614"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004614"^^xsd:string ; + owl:hasValue "PHOSPHOGLUCMUT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -251669,11 +251669,11 @@ bo:15682 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E5.4.99.2B"@en , "MCMA2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004494"^^xsd:string ; + owl:hasValue "COG2185"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2185"^^xsd:string ; + owl:hasValue "0004494"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -251824,11 +251824,11 @@ bo:14816 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "glucose permease"@en , "lactose glucose efflux transporter"@en , "glucose transmembrane transporter"@en , "GO:0005355"@en , "galactose glucose porter"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005355"^^xsd:string ; + owl:hasValue "14118 \"glucose transmembrane transporter activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14118 \"glucose transmembrane transporter activity\""^^xsd:string ; + owl:hasValue "GO:0005355"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -252008,15 +252008,15 @@ bo:21944 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "rhamnulokinase"@en , "GO:0008993"@en , "rhamnulose kinase"@en , "ATP:L-rhamnulose 1-phosphotransferase"@en , "L-rhamnulose kinase"@en , "L-rhamnulokinase"@en , "RhuK"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.5"^^xsd:string ; + owl:hasValue "RHAMNULOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008993"^^xsd:string ; + owl:hasValue "2.7.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RHAMNULOKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0008993"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -252062,63 +252062,63 @@ bo:15557 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "Embden-Meyerhof-Parnas pathway"@en , "glycolysis"@en , "GO:0006096"@en , "Embden-Meyerhof pathway"@en , "anaerobic glycolysis"@en , "modifed Embden-Meyerhof pathway"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526246 \"Glycolysis\""^^xsd:string ; + owl:hasValue "ANAGLYCOLYSIS-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592464 \"Glycolysis\""^^xsd:string ; + owl:hasValue "585775 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557749 \"Glycolysis\""^^xsd:string ; + owl:hasValue "526246 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597291 \"Glycolysis\""^^xsd:string ; + owl:hasValue "GO:0019642"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600580 \"Glycolysis\""^^xsd:string ; + owl:hasValue "PWY-5484"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547559 \"Glycolysis\""^^xsd:string ; + owl:hasValue "487406 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70171 \"Glycolysis\""^^xsd:string ; + owl:hasValue "592464 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602448 \"Glycolysis\""^^xsd:string ; + owl:hasValue "469694 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517369 \"Glycolysis\""^^xsd:string ; + owl:hasValue "GO:0019641"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448565 \"Glycolysis\""^^xsd:string ; + owl:hasValue "531123 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598100 \"Glycolysis\""^^xsd:string ; + owl:hasValue "P341-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ANAGLYCOLYSIS-PWY"^^xsd:string ; + owl:hasValue "547559 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P341-PWY"^^xsd:string ; + owl:hasValue "536495 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5484"^^xsd:string ; + owl:hasValue "597291 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536495 \"Glycolysis\""^^xsd:string ; + owl:hasValue "600580 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -252126,7 +252126,7 @@ bo:15557 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531123 \"Glycolysis\""^^xsd:string ; + owl:hasValue "557749 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -252134,59 +252134,59 @@ bo:15557 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595331 \"Glycolysis\""^^xsd:string ; + owl:hasValue "552161 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006096"^^xsd:string ; + owl:hasValue "448565 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019641"^^xsd:string ; + owl:hasValue "PWY-1042"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552161 \"Glycolysis\""^^xsd:string ; + owl:hasValue "598100 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Glycolysis"^^xsd:string ; + owl:hasValue "GO:0006096"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCOLYSIS"^^xsd:string ; + owl:hasValue "542205 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487406 \"Glycolysis\""^^xsd:string ; + owl:hasValue "599643 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599643 \"Glycolysis\""^^xsd:string ; + owl:hasValue "568366 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542205 \"Glycolysis\""^^xsd:string ; + owl:hasValue "517369 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568366 \"Glycolysis\""^^xsd:string ; + owl:hasValue "595331 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019642"^^xsd:string ; + owl:hasValue "GLYCOLYSIS"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469694 \"Glycolysis\""^^xsd:string ; + owl:hasValue "602448 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585775 \"Glycolysis\""^^xsd:string ; + owl:hasValue "70171 \"Glycolysis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-1042"^^xsd:string ; + owl:hasValue "Glycolysis"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -252268,16 +252268,6 @@ bo:28058 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31003 ; tawny:name "28058"@en . -bo:16563 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "phosphonoacetaldehyde hydrolase [EC:3.11.1.1]"@en ; - rdfs:label "PHNX"@en ; - sybio:accession "0050194"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16562 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05306"@en ; - tawny:name "16563"@en . - bo:28146 a sybio:Shim , owl:NamedIndividual ; rdfs:label "flgB_RBS_upstream"@en ; sybio:NA "GTTTTACAATTCTCGACAAGGATATTGAGGGTGAAAAAAAC"^^xsd:string ; @@ -252288,6 +252278,16 @@ bo:28146 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28145 ; tawny:name "28146"@en . +bo:16563 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "phosphonoacetaldehyde hydrolase [EC:3.11.1.1]"@en ; + rdfs:label "PHNX"@en ; + sybio:accession "0050194"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16562 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05306"@en ; + tawny:name "16563"@en . + bo:16651 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "glutamate--cysteine ligase regulatory subunit"@en ; rdfs:label "GCLM"@en ; @@ -252521,7 +252521,7 @@ bo:20140 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "maltose-6'-phosphate glucosidase"@en , "GO:0050081"@en , "maltose-6'-phosphate 6-phosphoglucohydrolase"@en , "phospho-alpha-glucosidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050081"^^xsd:string ; + owl:hasValue "3.2.1.122"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -252529,7 +252529,7 @@ bo:20140 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.122"^^xsd:string ; + owl:hasValue "GO:0050081"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -252603,17 +252603,6 @@ bo:17480 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00224"@en ; tawny:name "17480"@en . -bo:591 a owl:Class ; - rdfs:label "COG1555"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1555"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "591"@en . - bo:29063 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU28880"@en ; sybio:accession "BSU28880"^^xsd:string ; @@ -252640,6 +252629,17 @@ bo:1323 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1323"@en . +bo:591 a owl:Class ; + rdfs:label "COG1555"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1555"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "591"@en . + bo:29151 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU00170"@en ; rdfs:label "yaaI"@en , "BSU00170"@en ; @@ -252732,19 +252732,6 @@ bo:4785 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yhcM"@en ; tawny:name "4785"@en . -bo:16438 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "novobiocin biosynthesis protein NovR"@en ; - rdfs:label "NOVR"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9L9F0"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; - tawny:name "16438"@en . - a owl:Class ; rdfs:comment "Any process by which DNA and associated proteins are formed into a compact, orderly structure."@en ; @@ -252757,15 +252744,18 @@ bo:16438 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16526 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; - rdfs:label "PHPI"@en ; - sybio:accession "Q5IW33"^^xsd:string ; +bo:16438 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "novobiocin biosynthesis protein NovR"@en ; + rdfs:label "NOVR"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q9L9F0"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16527 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; - tawny:name "16526"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12708"@en ; + tawny:name "16438"@en . bo:4873 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "asnO_terminator"@en ; @@ -252779,6 +252769,16 @@ bo:4873 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4872 ; tawny:name "4873"@en . +bo:16526 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; + rdfs:label "PHPI"@en ; + sybio:accession "Q5IW33"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16527 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; + tawny:name "16526"@en . + bo:28109 a sybio:RBS , owl:NamedIndividual ; rdfs:label "cotX_RBS"@en ; sybio:NA "AAAAGGAGGAATAGAT"^^xsd:string ; @@ -252789,6 +252789,14 @@ bo:28109 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31270 ; tawny:name "28109"@en . +bo:4961 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "motAB"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31360 , bo:31097 ; + sybio:operonGenes "motA,motB"@en ; + tawny:name "4961"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins."@en ; @@ -252811,14 +252819,6 @@ bo:16614 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10566"@en ; tawny:name "16614"@en . -bo:4961 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "motAB"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31360 , bo:31097 ; - sybio:operonGenes "motA,motB"@en ; - tawny:name "4961"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the deacetylation of xylans and xylo-oligosaccharides."@en ; @@ -252829,11 +252829,11 @@ bo:4961 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.72"^^xsd:string ; + owl:hasValue "GO:0046555"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046555"^^xsd:string ; + owl:hasValue "3.1.1.72"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -252848,11 +252848,11 @@ bo:16702 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT20"^^xsd:string ; + owl:hasValue "COG0380"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0380"^^xsd:string ; + owl:hasValue "GT20"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -253096,6 +253096,18 @@ bo:466 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "466"@en . +bo:5790 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "yurRQPONML_terminator"@en ; + sybio:NA "AAAAACGAGAATACTATAAGCAGTGTCTCGTTTTTTATGCCTGTT"^^xsd:string ; + sybio:annotatedSequence "AAAAA{left}CGAGAATACT{/left}ATAAGC{right}AGTGTCTCG{/right}TTTTTTATGCCTGTT"@en ; + sybio:begin "3347069"@en ; + sybio:deltaGo "-9.3"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3347025"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:5789 ; + tawny:name "5790"@en . + bo:17443 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "salicylate hydroxylase [EC:1.14.13.1]"@en ; rdfs:label "E1.14.13.1"@en ; @@ -253113,18 +253125,6 @@ bo:17443 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00480"@en ; tawny:name "17443"@en . -bo:5790 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "yurRQPONML_terminator"@en ; - sybio:NA "AAAAACGAGAATACTATAAGCAGTGTCTCGTTTTTTATGCCTGTT"^^xsd:string ; - sybio:annotatedSequence "AAAAA{left}CGAGAATACT{/left}ATAAGC{right}AGTGTCTCG{/right}TTTTTTATGCCTGTT"@en ; - sybio:begin "3347069"@en ; - sybio:deltaGo "-9.3"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3347025"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:5789 ; - tawny:name "5790"@en . - bo:29026 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU03981"@en , "phosphotransferase system (PTS) mannitol-specific enzyme IICB component (EC:2.7.1.69);"@en ; rdfs:label "PTS"@en , "BSU03981"@en , "mtlA"@en ; @@ -253155,6 +253155,21 @@ bo:554 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "554"@en . +bo:29114 a sybio:CDS , owl:NamedIndividual ; + rdfs:label "BSU31880"@en ; + sybio:accession "BSU31880"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:maxExpressedIn bo:27078 ; + sybio:maxExpression "138.71"^^xsd:string ; + sybio:minExpressedIn bo:27067 ; + sybio:minExpression "3.14"^^xsd:string ; + sybio:unnormalizedMaxExpression + "15061.0"@en ; + sybio:unnormalizedMinExpression + "121.0"@en ; + tawny:name "29114"@en . + bo:17531 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]"@en ; rdfs:label "E4.1.1.39S"@en , "RBCS"@en ; @@ -253176,21 +253191,6 @@ bo:23389 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11652 ; tawny:name "23389"@en . -bo:29114 a sybio:CDS , owl:NamedIndividual ; - rdfs:label "BSU31880"@en ; - sybio:accession "BSU31880"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:maxExpressedIn bo:27078 ; - sybio:maxExpression "138.71"^^xsd:string ; - sybio:minExpressedIn bo:27067 ; - sybio:minExpression "3.14"^^xsd:string ; - sybio:unnormalizedMaxExpression - "15061.0"@en ; - sybio:unnormalizedMinExpression - "121.0"@en ; - tawny:name "29114"@en . - bo:642 a owl:Class ; rdfs:label "COG1078"@en ; rdfs:subClassOf bo:183 , sybio:COG ; @@ -253569,15 +253569,15 @@ bo:10939 a bo:1682 , bo:211 , bo:180 , sybio:Protein , owl rdfs:label "GO:0016788"@en , "esterase"@en , "hydrolase activity, acting on ester bonds"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.-.-"^^xsd:string ; + owl:hasValue "GO:0016788"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448 \"hydrolase activity, acting on ester bonds\""^^xsd:string ; + owl:hasValue "3.1.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016788"^^xsd:string ; + owl:hasValue "448 \"hydrolase activity, acting on ester bonds\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -253622,11 +253622,11 @@ bo:429 a owl:Class ; rdfs:label "ligase activity, forming aminoacyl-tRNA and related compounds"@en , "GO:0016876"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016876"^^xsd:string ; + owl:hasValue "6.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.-"^^xsd:string ; + owl:hasValue "GO:0016876"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -254298,6 +254298,17 @@ bo:25274 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11743 ; tawny:name "25274"@en . +bo:25362 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C01187 <=> cpd:C01187"@en , "C04478 + C00001 <=> C01187 + C00009"@en , "3-Deoxy-D-manno-octulosonate-8-phosphate 8-phosphohydrolase"@en ; + sybio:accession "RN:R03350"^^xsd:string ; + sybio:catalyzedBy bo:19048 ; + sybio:catalyzingClass bo:25363 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25362"@en . + bo:10052 a bo:364 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized MFS-type transporter yitZ"@en , "putative transport protein;BSU11180"@en ; rdfs:label "YitZ"@en , "yitZ"@en , "BSU11180"@en ; @@ -254316,17 +254327,6 @@ bo:10052 a bo:364 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10052"@en . -bo:25362 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C01187 <=> cpd:C01187"@en , "C04478 + C00001 <=> C01187 + C00009"@en , "3-Deoxy-D-manno-octulosonate-8-phosphate 8-phosphohydrolase"@en ; - sybio:accession "RN:R03350"^^xsd:string ; - sybio:catalyzedBy bo:19048 ; - sybio:catalyzingClass bo:25363 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25362"@en . - bo:6369 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yusMLKJ_terminator"@en ; sybio:NA "TCTGATTGGCCATGAGCTCCGCATGCGCGGAGCTCTTTTTTAAGAAGCAC"^^xsd:string ; @@ -254524,7 +254524,7 @@ bo:13690 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0015035"@en , "heme lyase disulfide oxidoreductase"@en , "thioredoxin"@en , "protein disulphide oxidoreductase"@en , "haem lyase disulphide oxidoreductase"@en , "protein disulfide oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008895"^^xsd:string ; + owl:hasValue "DISULFOXRED-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -254532,7 +254532,7 @@ bo:13690 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DISULFOXRED-RXN"^^xsd:string ; + owl:hasValue "GO:0008895"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -254587,16 +254587,6 @@ bo:31448 a sybio:CDS , owl:NamedIndividual ; sybio:partOf bo:4388 ; tawny:name "31448"@en . -bo:27958 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "nasA_RBS_upstream"@en ; - sybio:NA "AG"^^xsd:string ; - sybio:begin "362915"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "362916"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27957 ; - tawny:name "27958"@en . - bo:12648 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C8H8O5"@en ; rdfs:label "C8H8O5"@en , "3,4-Dihydroxymandelate"@en , "Dihydroxymandelic acid"@en ; @@ -254608,6 +254598,16 @@ bo:12648 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05580"@en ; tawny:name "12648"@en . +bo:27958 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "nasA_RBS_upstream"@en ; + sybio:NA "AG"^^xsd:string ; + sybio:begin "362915"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "362916"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27957 ; + tawny:name "27958"@en . + bo:19027 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.2242.4.1.225]"@en ; rdfs:label "EXT1"@en ; @@ -254617,11 +254617,11 @@ bo:19027 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT64"^^xsd:string ; + owl:hasValue "GT47"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT47"^^xsd:string ; + owl:hasValue "GT64"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -255491,6 +255491,17 @@ bo:32328 a owl:NamedIndividual , sybio:CDS ; "18.0"@en ; tawny:name "32328"@en . +bo:13528 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C27H44N7O19P3S"@en ; + rdfs:label "C27H44N7O19P3S"@en , "3-Hydroxy-5-oxohexanoyl-CoA"@en ; + sybio:accession "C16273"^^xsd:string , "47205581"^^xsd:string ; + sybio:consumedBy bo:24190 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24192 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16273"@en ; + tawny:name "13528"@en . + bo:28838 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU22600;"@en , "3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)"@en ; rdfs:label "aroE"@en , "BSU22600"@en ; @@ -255518,17 +255529,6 @@ bo:28838 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu22600"@en ; tawny:name "28838"@en . -bo:13528 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C27H44N7O19P3S"@en ; - rdfs:label "C27H44N7O19P3S"@en , "3-Hydroxy-5-oxohexanoyl-CoA"@en ; - sybio:accession "C16273"^^xsd:string , "47205581"^^xsd:string ; - sybio:consumedBy bo:24190 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24192 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16273"@en ; - tawny:name "13528"@en . - a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3."@en ; @@ -255539,11 +255539,11 @@ bo:13528 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPARAGHYD-RXN"^^xsd:string ; + owl:hasValue "3.5.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.1"^^xsd:string ; + owl:hasValue "ASPARAGHYD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -256028,6 +256028,12 @@ bo:27034 a owl:NamedIndividual , sybio:MicroarrayExperimen sybio:targetExperiment "strain: BFS2462/pDG148-yvqA (trpC2 yvqB::pMUTIN2(Emr)/pDG148-yvqA),\nmedium: LB+1mM IPTG, temperature: 37 deg C,\nharvest point: OD600=0.45, middle logarithmic phase"@en ; tawny:name "27034"@en . +bo:27122 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigG_gerD"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27122"@en . + bo:21397 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "1,7-dimethylxanthine"@en , "cpd:C13747 => cpd:C13747"@en , "oxygen oxidoreductase"@en , "C13747 + C00007 + C00001 <=> C16356 + C00027"@en ; @@ -256039,12 +256045,6 @@ bo:21397 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11576 , bo:11749 ; tawny:name "21397"@en . -bo:27122 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigG_gerD"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27122"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6."@en ; @@ -256057,6 +256057,12 @@ bo:27122 a sybio:FFL , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27210 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "sigA_codY_ackA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27210"@en . + bo:21485 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.5.4.14"@en ; @@ -256069,12 +256075,6 @@ bo:21485 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "21485"@en . -bo:27210 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "sigA_codY_ackA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27210"@en . - bo:21573 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "orphan"@en ; rdfs:label "uridine 5'-phosphotransferase"@en , " => "@en , "dATP"@en , "C00131 + C00299 <=> C00206 + C00105"@en ; @@ -256250,11 +256250,11 @@ bo:16192 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E5.5.1.7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1441"^^xsd:string ; + owl:hasValue "0018850"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018850"^^xsd:string ; + owl:hasValue "COG1441"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -256618,11 +256618,11 @@ bo:18876 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.3.14"^^xsd:string ; + owl:hasValue "UDPGLCNACEPIM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UDPGLCNACEPIM-RXN"^^xsd:string ; + owl:hasValue "5.1.3.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -256671,11 +256671,11 @@ bo:18964 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "MGAT4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008454"^^xsd:string ; + owl:hasValue "GT54"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT54"^^xsd:string ; + owl:hasValue "0008454"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -256765,6 +256765,14 @@ bo:15501 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4590 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydjJ"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30994 ; + sybio:operonGenes "ydjJ"@en ; + tawny:name "4590"@en . + bo:16243 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "muconolactone D-isomerase [EC:5.3.3.4]"@en ; rdfs:label "CATC"@en , "E5.3.3.4"@en ; @@ -256778,14 +256786,6 @@ bo:16243 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03464"@en ; tawny:name "16243"@en . -bo:4590 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydjJ"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30994 ; - sybio:operonGenes "ydjJ"@en ; - tawny:name "4590"@en . - bo:16331 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "aromatic amino acid hydroxylase [EC:1.14.16.-]"@en ; rdfs:label "E1.14.16.-"@en ; @@ -257047,27 +257047,27 @@ bo:17160 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05929"@en ; tawny:name "17160"@en . -bo:271 a owl:Class ; - rdfs:label "COG1539"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:1003 a owl:Class ; + rdfs:label "COG3339"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1539"^^xsd:string ; + owl:hasValue "COG3339"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "271"@en . + tawny:name "1003"@en . -bo:1003 a owl:Class ; - rdfs:label "COG3339"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:271 a owl:Class ; + rdfs:label "COG1539"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3339"^^xsd:string ; + owl:hasValue "COG1539"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1003"@en . + tawny:name "271"@en . bo:18839 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphatidylinositol glycan, class V [EC:2.4.1.-]"@en ; @@ -257195,7 +257195,7 @@ bo:4641 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "GO:0015940"@en , "pantothenate biosynthetic process"@en , "vitamin B5 biosynthetic process"@en , "pantothenate biosynthesis"@en , "pantothenate synthesis"@en , "pantothenate anabolism"@en , "pantothenate formation"@en , "vitamin B5 biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-4221"^^xsd:string ; + owl:hasValue "GO:0015940"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -257203,7 +257203,7 @@ bo:4641 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015940"^^xsd:string ; + owl:hasValue "PWY-4221"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -257306,6 +257306,15 @@ bo:19932 a owl:Class , owl:NamedIndividual , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19932"@en . +bo:25878 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label " <=> "@en , "C16431 + C00001 <=> C00371 + C00121"@en ; + sybio:accession "RN:R08073"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25878"@en . + bo:10568 a owl:NamedIndividual , sybio:Protein , bo:1603 ; rdfs:comment "putative integral inner membrane protein UPF0059 DUF0204 family;BSU36940"@en , "UPF0059 membrane protein ywlD"@en ; rdfs:label "YwlD"@en , "BSU36940"@en , "Ipc-30d"@en , "ywlD"@en ; @@ -257323,15 +257332,6 @@ bo:10568 a owl:NamedIndividual , sybio:Protein , bo:1603 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10568"@en . -bo:25878 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label " <=> "@en , "C16431 + C00001 <=> C00371 + C00121"@en ; - sybio:accession "RN:R08073"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25878"@en . - bo:5294 a owl:NamedIndividual , sybio:Operon ; rdfs:label "dacF-spoIIAAB-sigF"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -257340,6 +257340,15 @@ bo:5294 a owl:NamedIndividual , sybio:Operon ; sybio:operonGenes "dacF,spoIIAA,spoIIAB,sigF"@en ; tawny:name "5294"@en . +bo:25966 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "ABA-glucosyltransferase(AOG) - reversible"@en ; + rdfs:label "cpd:C15970 <=> cpd:C15970"@en , "C06082 + C00029 <=> C15970 + C00015"@en ; + sybio:accession "RN:R07575"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25966"@en . + bo:10656 a bo:364 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Probable metabolite transport protein csbC"@en , "putative sugar transporter;BSU39810"@en ; rdfs:label "CsbC"@en , "YxcC"@en , "BSU39810"@en , "csbC"@en ; @@ -257359,15 +257368,6 @@ bo:10656 a bo:364 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10656"@en . -bo:25966 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "ABA-glucosyltransferase(AOG) - reversible"@en ; - rdfs:label "cpd:C15970 <=> cpd:C15970"@en , "C06082 + C00029 <=> C15970 + C00015"@en ; - sybio:accession "RN:R07575"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25966"@en . - bo:17035 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "malonate-semialdehyde dehydrogenase (acetylating) [EC:1.2.1.18]"@en ; rdfs:label "E1.2.1.18"@en ; @@ -257704,25 +257704,6 @@ bo:30285 a sybio:CDS , owl:NamedIndividual ; "8.0"@en ; tawny:name "30285"@en . -bo:11485 a sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Protein xhlA"@en , "BSU12790;defective prophage PBSX putative enzyme"@en ; - rdfs:label "BSU12790"@en , "XhlA"@en , "xhlA"@en ; - sybio:AA "MQQEADVNVFQQDLADMKGEHKALEQRVSALERVSDRQDQQIMTLNEKLNKIEENTTWIKRTITGAIITAVSTGIIGGAIAIMYSLLQH"@en ; - sybio:accession "P39798"^^xsd:string , "BSU12790"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32500 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "4.4 : Phage-related functions"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "9997"^^xsd:string ; - sybio:pI "5.235847"^^xsd:string ; - sybio:productType "h : extrachromosomal origin"^^xsd:string ; - sybio:relatedTo bo:9223 , bo:11525 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11485"@en . - bo:26795 a sybio:Protein , bo:1831 , owl:NamedIndividual ; rdfs:comment "ATP synthase subunit delta;;derived protein"@en , "BSU36840;ATP synthase (subunit delta, component F1)"@en ; rdfs:label "atpH"@en , "BSU36840"@en , "AtpH"@en ; @@ -257744,6 +257725,25 @@ bo:26795 a sybio:Protein , bo:1831 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26795"@en . +bo:11485 a sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Protein xhlA"@en , "BSU12790;defective prophage PBSX putative enzyme"@en ; + rdfs:label "BSU12790"@en , "XhlA"@en , "xhlA"@en ; + sybio:AA "MQQEADVNVFQQDLADMKGEHKALEQRVSALERVSDRQDQQIMTLNEKLNKIEENTTWIKRTITGAIITAVSTGIIGGAIAIMYSLLQH"@en ; + sybio:accession "P39798"^^xsd:string , "BSU12790"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32500 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "4.4 : Phage-related functions"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "9997"^^xsd:string ; + sybio:pI "5.235847"^^xsd:string ; + sybio:productType "h : extrachromosomal origin"^^xsd:string ; + sybio:relatedTo bo:9223 , bo:11525 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11485"@en . + bo:30373 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU30170;"@en ; rdfs:label "ytcP"@en , "BSU30170"@en ; @@ -257769,17 +257769,6 @@ bo:30373 a owl:NamedIndividual , sybio:CDS ; "9.0"@en ; tawny:name "30373"@en . -bo:11573 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00190"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00190"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11573"@en . - bo:26883 a owl:NamedIndividual , bo:401 , sybio:Protein ; rdfs:comment "BSU37130;two-component response regulator;"@en , "Sporulation initiation phosphotransferase F;derived protein"@en ; rdfs:label "spo0F"@en , "BSU37130"@en , "Spo0F"@en ; @@ -257804,16 +257793,16 @@ bo:26883 a owl:NamedIndividual , bo:401 , sybio:Protein ; tawny:name "26883"@en ; owl:sameAs bo:6571 . -bo:11661 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00561"@en ; +bo:11573 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00190"@en ; rdfs:subClassOf sybio:Pathway ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00561"^^xsd:string ; + owl:hasValue "PATH:KO00190"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11661"@en . + tawny:name "11573"@en . bo:30461 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32730"@en ; @@ -257860,16 +257849,27 @@ bo:26971 a owl:NamedIndividual , bo:403 , bo:455 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26971"@en . +bo:11661 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00561"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00561"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11661"@en . + bo:18040 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "coenzyme F420 hydrogenase gamma subunit [EC:1.12.98.1]"@en ; rdfs:label "E1.12.98.1G"@en , "FRHG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1941"^^xsd:string ; + owl:hasValue "0050454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050454"^^xsd:string ; + owl:hasValue "COG1941"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -257883,11 +257883,11 @@ bo:18040 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "phosphoribosyl-ATP:pyrophosphate-phosphoribosyl phosphotransferase"@en , "phosphoribosyladenosine triphosphate:pyrophosphate phosphoribosyltransferase"@en , "phospho-alpha-D-ribosyl-transferase"@en , "phosphoribosyl-ATP diphosphorylase"@en , "phosphoribosyladenosine triphosphate synthetase"@en , "GO:0003879"@en , "phosphoribosyladenosine triphosphate pyrophosphorylase"@en , "phosphoribosyl ATP synthetase"@en , "adenosine triphosphate phosphoribosyltransferase"@en , "phosphoribosyl ATP:pyrophosphate phosphoribosyltransferase"@en , "phosphoribosyl-ATP pyrophosphorylase"@en , "ATP phosphoribosyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003879"^^xsd:string ; + owl:hasValue "2.4.2.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.17"^^xsd:string ; + owl:hasValue "GO:0003879"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -259053,11 +259053,11 @@ bo:9863 a bo:836 , owl:NamedIndividual , sybio:Protein ; rdfs:label "GO:0005764"@en , "lysosome"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Lysosome"^^xsd:string ; + owl:hasValue "GO:0005764"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005764"^^xsd:string ; + owl:hasValue "Lysosome"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -259114,7 +259114,7 @@ bo:31128 a sybio:CDS , owl:NamedIndividual ; rdfs:label "septin ring"@en , "GO:0005940"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030481"^^xsd:string ; + owl:hasValue "Septin_ring"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -259122,7 +259122,7 @@ bo:31128 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Septin_ring"^^xsd:string ; + owl:hasValue "GO:0030481"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -259432,11 +259432,11 @@ bo:16972 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "DGAT2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004144"^^xsd:string ; + owl:hasValue "0050252"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050252"^^xsd:string ; + owl:hasValue "0004144"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -260255,11 +260255,11 @@ bo:17764 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.2.99.2A"@en , "CDHA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018492"^^xsd:string ; + owl:hasValue "COG1152"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1152"^^xsd:string ; + owl:hasValue "0018492"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -260999,11 +260999,11 @@ bo:18556 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "IVD"@en , "E1.3.99.10"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008470"^^xsd:string ; + owl:hasValue "COG1960"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1960"^^xsd:string ; + owl:hasValue "0008470"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -261017,7 +261017,7 @@ bo:18556 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "phosphoadenylate 3'-nucleotidase"@en , "DPNPase"@en , "3'-phosphoadenylylsulfate 3'-phosphatase"@en , "GO:0008441"@en , "3'(2'),5'-bisphosphate nucleotidase"@en , "5'-bisphosphonucleoside"@en , "5'-bisphosphate"@en , "5' bisphosphate nucleotidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "325-BISPHOSPHATE-NUCLEOTIDASE-RXN"^^xsd:string ; + owl:hasValue "3.1.3.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -261025,11 +261025,11 @@ bo:18556 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.7"^^xsd:string ; + owl:hasValue "24620 \"3'(2'),5'-bisphosphate nucleotidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "24620 \"3'(2'),5'-bisphosphate nucleotidase activity\""^^xsd:string ; + owl:hasValue "325-BISPHOSPHATE-NUCLEOTIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -261207,11 +261207,11 @@ bo:22045 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019275"^^xsd:string ; + owl:hasValue "GO:0019274"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019274"^^xsd:string ; + owl:hasValue "GO:0019275"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -261395,6 +261395,15 @@ bo:10197 a sybio:Protein , owl:NamedIndividual , bo:1280 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10197"@en . +bo:25595 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "G10616 + G00121 <=> G10621 + G00122"@en , "gl:G00121 <=> gl:G00121"@en ; + sybio:accession "RN:R05955"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25595"@en . + bo:10285 a owl:NamedIndividual , sybio:Protein , bo:473 ; rdfs:comment "Uncharacterized protein yqjE;"@en , "BSU23910;putative deacylase"@en ; rdfs:label "YqjE"@en , "BSU23910"@en , "yqjE"@en ; @@ -261413,15 +261422,6 @@ bo:10285 a owl:NamedIndividual , sybio:Protein , bo:473 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10285"@en . -bo:25595 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "G10616 + G00121 <=> G10621 + G00122"@en , "gl:G00121 <=> gl:G00121"@en ; - sybio:accession "RN:R05955"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25595"@en . - bo:16010 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "ornithine decarboxylase [EC:4.1.1.17]"@en ; rdfs:label "E4.1.1.17"@en , "SPEC"@en , "SPEF"@en , "ODC1"@en ; @@ -261432,6 +261432,18 @@ bo:16010 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01581"@en ; tawny:name "16010"@en . +bo:25683 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.3.1.78"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.3.1.78"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25683"@en . + bo:10373 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized membrane protein ysxD"@en , "BSU28180;putative integral inner membrane protein"@en ; rdfs:label "BSU28180"@en , "YsxD"@en , "ysxD"@en ; @@ -261448,17 +261460,15 @@ bo:10373 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10373"@en . -bo:25683 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.3.1.78"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.78"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25683"@en . +bo:25771 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C07212 <=> cpd:C07212"@en , "C07212 + C00340 + C00007 <=> C07213 + C00435 + C00001"@en ; + sybio:accession "RN:R05489"^^xsd:string ; + sybio:catalyzingClass bo:25225 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25771"@en . bo:10461 a bo:868 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU32030;putative biotin transporter;"@en , "Putative biotin transporter bioYB"@en ; @@ -261478,16 +261488,6 @@ bo:10461 a bo:868 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10461"@en . -bo:25771 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C07212 <=> cpd:C07212"@en , "C07212 + C00340 + C00007 <=> C07213 + C00435 + C00001"@en ; - sybio:accession "RN:R05489"^^xsd:string ; - sybio:catalyzingClass bo:25225 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25771"@en . - bo:6778 a sybio:Protein , owl:NamedIndividual , bo:1760 ; rdfs:comment "BSU34760;gluconeogenesis factor;"@en ; rdfs:label "YvcK"@en , "BSU34760"@en ; @@ -261664,19 +261664,19 @@ bo:4321 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "5-phospho-alpha-D-ribose-1-diphosphate:xanthine phospho-D-ribosyltransferase"@en , "xanthine-guanine phosphoribosyltransferase"@en , "xanthylic pyrophosphorylase"@en , "xanthosine 5'-phosphate pyrophosphorylase"@en , "xanthine phosphoribosyltransferase"@en , "xanthylate pyrophosphorylase"@en , "GO:0000310"@en , "Xan phosphoribosyltransferase"@en , "XMP:diphosphate 5-phospho-alpha-D-ribosyltransferase"@en , "XMP pyrophosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009043"^^xsd:string ; + owl:hasValue "2.4.2.22"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "XANPRIBOSYLTRAN-RXN"^^xsd:string ; + owl:hasValue "GO:0000310"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000310"^^xsd:string ; + owl:hasValue "XANPRIBOSYLTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.22"^^xsd:string ; + owl:hasValue "GO:0009043"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -261858,11 +261858,11 @@ bo:31945 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0003684"@en , "damaged DNA binding"@en , "DNA repair protein"@en , "DNA repair enzyme"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7372 \"damaged DNA binding\""^^xsd:string ; + owl:hasValue "GO:0003684"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003684"^^xsd:string ; + owl:hasValue "7372 \"damaged DNA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -262292,11 +262292,11 @@ bo:26299 a sybio:Protein , bo:702 , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015407"^^xsd:string ; + owl:hasValue "3.6.3.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.17"^^xsd:string ; + owl:hasValue "GO:0015407"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -262328,6 +262328,25 @@ bo:32950 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu33240"@en ; tawny:name "32950"@en . +bo:26387 a sybio:Protein , bo:820 , owl:NamedIndividual ; + rdfs:comment "Endo-1,4-beta-xylanase;Xylulose kinase;derived protein"@en , "BSU17610;xylulose kinase"@en ; + rdfs:label "xylB"@en , "XylB"@en , "YncA"@en , "BSU17610"@en ; + sybio:AA "MKYVIGIDLGTSAVKTILVNQNGKVCAETSKRYPLIQEKAGYSEQNPEDWVQQTIEALAELVSISNVQAKDIDGISYSGQMHGLVLLDQDRQVLRNAILWNDTRTTPQCIRMTEKFGDHLLDITKNRVLEGFTLPKMLWVKEHEPELFKKTAVFLLPKDYVRFRMTGVIHTEYSDAAGTLLLHITRKEWSNDICNQIGISADICPPLVESHDCVGSLLPHVAAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSGVILSYEEEKERDFKGKVHFFNHGKKDSFYTMGVTLAAGYSLDWFKRTFAPNESFEQLLQGVEAIPIGANGLLYTPYLVGERTPHADSSIRGSLIGMDGAHNRKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIGGGAKNDTWLQMQADIFNTRVIKLENEQGPAMGAAMLAAFGSGWFESLEECAEQFIREAAAFYPKAQNVQKYKTLFDLYKNIYTHTKDLNTALKSFRKN"@en ; + sybio:accession "C7F433"^^xsd:string , "16078824"^^xsd:string , "P39211"^^xsd:string , "Q45VU1"^^xsd:string , "BSU17610"^^xsd:string , "939560"^^xsd:string , "Q45VU2"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32365 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "55415.13"^^xsd:string ; + sybio:pI "6.464394"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26587 ; + sybio:taxId "224308"@en ; + tawny:name "26387"@en . + bo:11077 a owl:NamedIndividual , bo:401 , sybio:Protein , bo:402 ; rdfs:comment "BSU02000;two-component response regulator [YbdK]"@en , "Uncharacterized transcriptional regulatory protein ybdJ;"@en ; rdfs:label "YbdJ"@en , "BSU02000"@en , "ybdJ"@en ; @@ -262349,24 +262368,25 @@ bo:11077 a owl:NamedIndividual , bo:401 , sybio:Protein , tawny:name "11077"@en ; owl:sameAs bo:6580 . -bo:26387 a sybio:Protein , bo:820 , owl:NamedIndividual ; - rdfs:comment "Endo-1,4-beta-xylanase;Xylulose kinase;derived protein"@en , "BSU17610;xylulose kinase"@en ; - rdfs:label "xylB"@en , "XylB"@en , "YncA"@en , "BSU17610"@en ; - sybio:AA "MKYVIGIDLGTSAVKTILVNQNGKVCAETSKRYPLIQEKAGYSEQNPEDWVQQTIEALAELVSISNVQAKDIDGISYSGQMHGLVLLDQDRQVLRNAILWNDTRTTPQCIRMTEKFGDHLLDITKNRVLEGFTLPKMLWVKEHEPELFKKTAVFLLPKDYVRFRMTGVIHTEYSDAAGTLLLHITRKEWSNDICNQIGISADICPPLVESHDCVGSLLPHVAAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSGVILSYEEEKERDFKGKVHFFNHGKKDSFYTMGVTLAAGYSLDWFKRTFAPNESFEQLLQGVEAIPIGANGLLYTPYLVGERTPHADSSIRGSLIGMDGAHNRKHFLRAIMEGITFSLHESIELFREAGKSVHTVVSIGGGAKNDTWLQMQADIFNTRVIKLENEQGPAMGAAMLAAFGSGWFESLEECAEQFIREAAAFYPKAQNVQKYKTLFDLYKNIYTHTKDLNTALKSFRKN"@en ; - sybio:accession "C7F433"^^xsd:string , "16078824"^^xsd:string , "P39211"^^xsd:string , "Q45VU1"^^xsd:string , "BSU17610"^^xsd:string , "939560"^^xsd:string , "Q45VU2"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; +bo:26475 a owl:NamedIndividual , bo:1120 , sybio:Protein ; + rdfs:comment "BSU23070;3-phosphoglycerate dehydrogenase"@en , "D-3-phosphoglycerate dehydrogenase;;derived protein"@en ; + rdfs:label "BSU23070"@en , "serA"@en , "SerA"@en ; + sybio:AA "MFRVLVSDKMSNDGLQPLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKLETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYDNCISVKVTGDRSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDIVSVKLIDLP"@en ; + sybio:accession "BSU23070"^^xsd:string , "255767495"^^xsd:string , "P35136"^^xsd:string , "938964"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32365 ; + sybio:encodedBy bo:32393 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:hasFunction , , , , , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:interactsWith bo:26409 ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "55415.13"^^xsd:string ; - sybio:pI "6.464394"^^xsd:string ; + sybio:molecularWeight "57127.13"^^xsd:string ; + sybio:pI "5.692039"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26587 ; - sybio:taxId "224308"@en ; - tawny:name "26387"@en . + sybio:relatedTo bo:26861 , bo:10958 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26475"@en . bo:11165 a bo:1653 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "cytochrome bd ubiquinol oxidase (subunit II);BSU38750;"@en , "Cytochrome d ubiquinol oxidase subunit 2"@en ; @@ -262389,26 +262409,6 @@ bo:11165 a bo:1653 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11165"@en . -bo:26475 a owl:NamedIndividual , bo:1120 , sybio:Protein ; - rdfs:comment "BSU23070;3-phosphoglycerate dehydrogenase"@en , "D-3-phosphoglycerate dehydrogenase;;derived protein"@en ; - rdfs:label "BSU23070"@en , "serA"@en , "SerA"@en ; - sybio:AA "MFRVLVSDKMSNDGLQPLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKLETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYDNCISVKVTGDRSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDIVSVKLIDLP"@en ; - sybio:accession "BSU23070"^^xsd:string , "255767495"^^xsd:string , "P35136"^^xsd:string , "938964"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32393 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:interactsWith bo:26409 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "57127.13"^^xsd:string ; - sybio:pI "5.692039"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26861 , bo:10958 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26475"@en . - bo:30053 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21220"@en ; rdfs:label "yomU"@en , "BSU21220"@en ; @@ -262434,25 +262434,6 @@ bo:30053 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "30053"@en . -bo:11253 a owl:NamedIndividual , sybio:Protein , bo:266 ; - rdfs:comment "Uncharacterized protein yacD"@en , "BSU00720;putative protein secretion PrsA homolog"@en ; - rdfs:label "YacD"@en , "BSU00720"@en , "yacD"@en ; - sybio:AA "LKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKTLWKEADVSWFYGEKSTK"@en ; - sybio:accession "P37566"^^xsd:string , "BSU00720"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29171 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.6 : Protein secretion"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "34077.18"^^xsd:string ; - sybio:pI "5.142387"^^xsd:string ; - sybio:productType "pf : putative factor"^^xsd:string ; - sybio:relatedTo bo:9183 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11253"@en . - bo:26563 a bo:1564 , owl:NamedIndividual , sybio:Protein , bo:1191 ; rdfs:comment "Glutamyl-tRNA reductase;derived protein"@en , "BSU28170;glutamyl-tRNA reductase"@en ; rdfs:label "hemA"@en , "BSU28170"@en , "HemA"@en ; @@ -262472,6 +262453,25 @@ bo:26563 a bo:1564 , owl:NamedIndividual , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "26563"@en . +bo:11253 a owl:NamedIndividual , sybio:Protein , bo:266 ; + rdfs:comment "Uncharacterized protein yacD"@en , "BSU00720;putative protein secretion PrsA homolog"@en ; + rdfs:label "YacD"@en , "BSU00720"@en , "yacD"@en ; + sybio:AA "LKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKTLWKEADVSWFYGEKSTK"@en ; + sybio:accession "P37566"^^xsd:string , "BSU00720"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29171 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.6 : Protein secretion"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "34077.18"^^xsd:string ; + sybio:pI "5.142387"^^xsd:string ; + sybio:productType "pf : putative factor"^^xsd:string ; + sybio:relatedTo bo:9183 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11253"@en . + bo:30141 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU23040"@en ; rdfs:label "fer"@en , "ypbA"@en , "BSU23040"@en ; @@ -262569,31 +262569,31 @@ bo:31908 a sybio:CDS , owl:NamedIndividual ; rdfs:label "ribosomal RNA"@en , "ribosomal protein"@en , "structural constituent of ribosome"@en , "GO:0003735"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003740"^^xsd:string ; + owl:hasValue "GO:0003735"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003742"^^xsd:string ; + owl:hasValue "GO:0003737"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003737"^^xsd:string ; + owl:hasValue "GO:0003739"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003741"^^xsd:string ; + owl:hasValue "GO:0003738"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003735"^^xsd:string ; + owl:hasValue "GO:0003741"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003738"^^xsd:string ; + owl:hasValue "GO:0003742"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003739"^^xsd:string ; + owl:hasValue "GO:0003740"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -262613,11 +262613,11 @@ bo:31908 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA-LIGASE-NAD+-RXN"^^xsd:string ; + owl:hasValue "6.5.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.5.1.2"^^xsd:string ; + owl:hasValue "DNA-LIGASE-NAD+-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -262790,12 +262790,12 @@ bo:13937 a sybio:Compound , owl:NamedIndividual ; tawny:name "13937"@en . - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; + a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate."@en ; rdfs:label "GO:0004476"@en , "mannose-6-phosphate isomerase"@en , "mannose phosphate isomerase"@en , "D-mannose-6-phosphate ketol-isomerase"@en , "phosphomannoisomerase"@en , "D-mannose-6-phosphate aldose-ketose-isomerase"@en , "phosphohexoisomerase"@en , "phosphohexomutase"@en , "phosphomannose isomerase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MANNPISOM-RXN"^^xsd:string ; + owl:hasValue "5.3.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -262803,7 +262803,7 @@ bo:13937 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.8"^^xsd:string ; + owl:hasValue "MANNPISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -262838,10 +262838,10 @@ bo:32825 a sybio:CDS , owl:NamedIndividual ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides."@en ; - rdfs:label "beta-D-fructofuranoside fructohydrolase"@en , "saccharase"@en , "invertase"@en , "beta-fructosidase"@en , "glucosucrase"@en , "maxinvert L 1000"@en , "acid invertase"@en , "beta-fructofuranosidase"@en , "sucrase"@en , "beta-h-fructosidase"@en , "fructosylinvertase"@en , "invertin"@en , "GO:0004564"@en , "alkaline invertase"@en ; + rdfs:label "beta-D-fructofuranoside fructohydrolase"@en , "saccharase"@en , "invertase"@en , "beta-fructosidase"@en , "glucosucrase"@en , "maxinvert L 1000"@en , "acid invertase"@en , "sucrase"@en , "beta-fructofuranosidase"@en , "beta-h-fructosidase"@en , "fructosylinvertase"@en , "invertin"@en , "GO:0004564"@en , "alkaline invertase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.26"^^xsd:string ; + owl:hasValue "GO:0004564"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -262849,7 +262849,7 @@ bo:32825 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004564"^^xsd:string ; + owl:hasValue "3.2.1.26"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -263188,11 +263188,11 @@ bo:14854 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "FCL"@en , "E1.1.1.271"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050577"^^xsd:string ; + owl:hasValue "COG0451"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0451"^^xsd:string ; + owl:hasValue "0050577"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -263565,11 +263565,11 @@ bo:14905 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "YFAW"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4948"^^xsd:string ; + owl:hasValue "0050032"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050032"^^xsd:string ; + owl:hasValue "COG4948"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -263826,6 +263826,16 @@ bo:15910 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796"@en ; tawny:name "15910"@en . +bo:28147 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "trpP_RBS"@en ; + sybio:NA "TAGCAGAGGAGAGCATAGTT"^^xsd:string ; + sybio:begin "1075184"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1075165"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31477 ; + tawny:name "28147"@en . + bo:16564 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "phosphonoacetaldehyde hydrolase [EC:3.11.1.1]"@en ; rdfs:label "PHNX"@en ; @@ -263839,16 +263849,6 @@ bo:16564 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05306"@en ; tawny:name "16564"@en . -bo:28147 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "trpP_RBS"@en ; - sybio:NA "TAGCAGAGGAGAGCATAGTT"^^xsd:string ; - sybio:begin "1075184"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1075165"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31477 ; - tawny:name "28147"@en . - bo:16652 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]"@en ; rdfs:label "E3.5.2.9"@en ; @@ -264126,17 +264126,6 @@ bo:17481 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00224"@en ; tawny:name "17481"@en . -bo:592 a owl:Class ; - rdfs:label "COG3091"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3091"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "592"@en . - bo:29064 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU06050"@en ; sybio:accession "BSU06050"^^xsd:string ; @@ -264163,16 +264152,16 @@ bo:1324 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1324"@en . -bo:680 a owl:Class ; - rdfs:label "COG0152"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; +bo:592 a owl:Class ; + rdfs:label "COG3091"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0152"^^xsd:string ; + owl:hasValue "COG3091"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "680"@en . + tawny:name "592"@en . bo:29152 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU00200"@en ; @@ -264210,6 +264199,17 @@ bo:1412 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1412"@en . +bo:680 a owl:Class ; + rdfs:label "COG0152"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0152"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "680"@en . + bo:29240 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU02190"@en ; rdfs:label "ybfF"@en , "BSU02190"@en ; @@ -264318,111 +264318,101 @@ bo:4874 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yisY"@en ; tawny:name "4874"@en . -bo:16527 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; - rdfs:label "PHPI"@en ; - sybio:accession "Q5IW33"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16526 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; - tawny:name "16527"@en . - a owl:Class , owl:NamedIndividual , sybio:BiologicalProcess ; rdfs:comment "The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome."@en ; rdfs:label "protein translation"@en , "protein formation"@en , "GO:0006412"@en , "translation"@en , "protein anabolism"@en , "protein synthesis"@en , "protein biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585834 \"Translation\""^^xsd:string ; + owl:hasValue "542335 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598177 \"Translation\""^^xsd:string ; + owl:hasValue "GO:0006416"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469916 \"Translation\""^^xsd:string ; + owl:hasValue "595406 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448800 \"Translation\""^^xsd:string ; + owl:hasValue "536611 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568477 \"Translation\""^^xsd:string ; + owl:hasValue "557879 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595406 \"Translation\""^^xsd:string ; + owl:hasValue "GO:0006412"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592595 \"Translation\""^^xsd:string ; + owl:hasValue "597395 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547676 \"Translation\""^^xsd:string ; + owl:hasValue "568477 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581688 \"Translation\""^^xsd:string ; + owl:hasValue "448800 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597395 \"Translation\""^^xsd:string ; + owl:hasValue "487622 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557879 \"Translation\""^^xsd:string ; + owl:hasValue "531240 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536611 \"Translation\""^^xsd:string ; + owl:hasValue "GO:0006453"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006412"^^xsd:string ; + owl:hasValue "599776 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006416"^^xsd:string ; + owl:hasValue "598177 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043037"^^xsd:string ; + owl:hasValue "552260 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599776 \"Translation\""^^xsd:string ; + owl:hasValue "469916 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006453"^^xsd:string ; + owl:hasValue "585834 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Translation_(genetics)"^^xsd:string ; + owl:hasValue "592595 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "72766 \"Translation\""^^xsd:string ; + owl:hasValue "526417 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507577 \"Translation\""^^xsd:string ; + owl:hasValue "581688 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552260 \"Translation\""^^xsd:string ; + owl:hasValue "547676 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531240 \"Translation\""^^xsd:string ; + owl:hasValue "507577 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487622 \"Translation\""^^xsd:string ; + owl:hasValue "GO:0043037"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -264430,33 +264420,26 @@ bo:16527 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542335 \"Translation\""^^xsd:string ; + owl:hasValue "Translation_(genetics)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526417 \"Translation\""^^xsd:string ; + owl:hasValue "72766 \"Translation\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:hasPart , , , . -bo:16615 a sybio:KOEN , owl:Class , owl:NamedIndividual ; - rdfs:comment "phenylacetaldoxime dehydratase [EC:4.99.1.7]"@en ; - rdfs:label "OXDB"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018814"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P82604"^^xsd:string ; - owl:onProperty sybio:accession - ] ; +bo:16527 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; + rdfs:label "PHPI"@en ; + sybio:accession "Q5IW33"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16526 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10566"@en ; - tawny:name "16615"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; + tawny:name "16527"@en . bo:4962 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "motAB_terminator"@en ; @@ -264470,17 +264453,34 @@ bo:4962 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4961 ; tawny:name "4962"@en . +bo:16615 a sybio:KOEN , owl:Class , owl:NamedIndividual ; + rdfs:comment "phenylacetaldoxime dehydratase [EC:4.99.1.7]"@en ; + rdfs:label "OXDB"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "P82604"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0018814"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10566"@en ; + tawny:name "16615"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides."@en ; - rdfs:label "alpha-N-arabinofuranosidase"@en , "alpha-arabinosidase"@en , "arabinosidase"@en , "alpha-L-arabinofuranoside hydrolase"@en , "alpha-L-arabinofuranoside arabinofuranohydrolase"@en , "alpha-L-arabinofuranosidase"@en , "alpha-L-arabinosidase"@en , "arabinofuranosidase"@en , "alpha-arabinofuranosidase"@en , "alpha-L-arabinanase"@en , "polysaccharide alpha-L-arabinofuranosidase"@en , "GO:0046556"@en , "L-arabinosidase"@en ; + rdfs:label "L-arabinosidase"@en , "alpha-N-arabinofuranosidase"@en , "alpha-arabinosidase"@en , "arabinosidase"@en , "alpha-L-arabinofuranoside hydrolase"@en , "alpha-L-arabinofuranoside arabinofuranohydrolase"@en , "alpha-L-arabinofuranosidase"@en , "alpha-L-arabinosidase"@en , "arabinofuranosidase"@en , "alpha-arabinofuranosidase"@en , "alpha-L-arabinanase"@en , "polysaccharide alpha-L-arabinofuranosidase"@en , "GO:0046556"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046556"^^xsd:string ; + owl:hasValue "3.2.1.55"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.55"^^xsd:string ; + owl:hasValue "GO:0046556"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -264540,13 +264540,29 @@ bo:22737 a owl:Class , owl:NamedIndividual , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22737"@en . +bo:2153 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU18990;putative phage protein"@en ; + rdfs:label "YobK"@en , "BSU18990"@en ; + sybio:AA "MIYSKVENFINENKQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDEDEDWDD"@en ; + sybio:accession "BSU18990"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:29874 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "17714.745"^^xsd:string ; + sybio:pI "4.168587"^^xsd:string ; + sybio:productType "h : extrachromosomal origin"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2153"@en . + a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: chorismate + glutamine = 4-amino-4-deoxychorismic acid + glutamate. It is composed of two enzymatic activities (which may be present on one or two polypeptides); the first is a glutaminase which yields ammonia from glutamine, releasing glutamate. The ammonia is used by the second activity which catalyzes the amination of chorismate to form 4-amino-4-deoxychorismate."@en ; rdfs:label "PabB"@en , "ADC synthase"@en , "4-amino-4-deoxychorismate synthase"@en , "para-aminobenzoic acid synthase"@en , "chorismate:L-glutamine amido-ligase"@en , "GO:0046820"@en , "p-aminobenzoate synthetase"@en , "aminodeoxychorismate synthase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PABASYN-RXN"^^xsd:string ; + owl:hasValue "GO:0046820"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -264554,28 +264570,12 @@ bo:22737 a owl:Class , owl:NamedIndividual , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046820"^^xsd:string ; + owl:hasValue "PABASYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2153 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU18990;putative phage protein"@en ; - rdfs:label "YobK"@en , "BSU18990"@en ; - sybio:AA "MIYSKVENFINENKQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDEDEDWDD"@en ; - sybio:accession "BSU18990"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:29874 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "17714.745"^^xsd:string ; - sybio:pI "4.168587"^^xsd:string ; - sybio:productType "h : extrachromosomal origin"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2153"@en . - bo:22825 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "Tryptamine"@en , "oxygen oxidoreductase(deaminating)"@en , "C00398 + C00001 + C00007 <=> C00637 + C00014 + C00027"@en , "cpd:C00398 => cpd:C00398"@en ; @@ -264711,11 +264711,11 @@ bo:17356 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.1.1.39"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004471"^^xsd:string ; + owl:hasValue "COG0281"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0281"^^xsd:string ; + owl:hasValue "0004471"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -264734,14 +264734,6 @@ bo:467 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "467"@en . -bo:17444 a sybio:KOGE , owl:NamedIndividual ; - rdfs:label "E4.1.99.-"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17445 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01670"@en ; - tawny:name "17444"@en . - bo:5791 a sybio:Operon , owl:NamedIndividual ; rdfs:label "sspG-yurS"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -264750,6 +264742,14 @@ bo:5791 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "sspG,yurS"@en ; tawny:name "5791"@en . +bo:17444 a sybio:KOGE , owl:NamedIndividual ; + rdfs:label "E4.1.99.-"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17445 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01670"@en ; + tawny:name "17444"@en . + bo:29027 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU28130"@en , "delta-aminolevulinic acid dehydratase (EC:4.2.1.24)"@en ; rdfs:label "BSU28130"@en , "hemB"@en ; @@ -264830,15 +264830,15 @@ bo:643 a owl:Class ; rdfs:label "D-alanine-D-alanyl carrier protein ligase"@en , "D-alanine: membrane acceptor ligase"@en , "ligase"@en , "synthetase"@en , "D-alanine-activating enzyme"@en , "GO:0047473"@en , "D-alanine-membrane acceptor ligase"@en , "D-alanine-poly(phosphoribitol) ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.13"^^xsd:string ; + owl:hasValue "GO:0047473"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.13-RXN"^^xsd:string ; + owl:hasValue "6.1.1.13"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047473"^^xsd:string ; + owl:hasValue "6.1.1.13-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -264998,11 +264998,11 @@ bo:18097 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "CHLH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016851"^^xsd:string ; + owl:hasValue "COG1429"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1429"^^xsd:string ; + owl:hasValue "0016851"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -265309,11 +265309,11 @@ bo:518 a owl:Class ; rdfs:label "CDP-glycerol diphosphorylase"@en , "cytidine diphosphoglycerol pyrophosphorylase"@en , "cytidine diphosphate glycerol pyrophosphorylase"@en , "Gro-PCT"@en , "CTP:glycerol 3-phosphate cytidylyltransferase"@en , "CTP:sn-glycerol-3-phosphate cytidylyltransferase"@en , "CDP-glycerol pyrophosphorylase"@en , "CTP:glycerol-3-phosphate cytidylyltransferase"@en , "glycerol-3-phosphate cytidylyltransferase"@en , "GO:0047348"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047348"^^xsd:string ; + owl:hasValue "2.7.7.39"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.39"^^xsd:string ; + owl:hasValue "GO:0047348"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -265506,11 +265506,11 @@ bo:18148 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CBIE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2241"^^xsd:string ; + owl:hasValue "0046025"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046025"^^xsd:string ; + owl:hasValue "COG2241"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -265591,15 +265591,15 @@ bo:18236 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "ubiquinol-cytochrome c-2 oxidoreductase"@en , "QH2:cytochrome c oxidoreductase"@en , "GO:0008121"@en , "CoQH2-cytochrome c oxidoreductase"@en , "cytochrome bc1 complex"@en , "ubiquinone-cytochrome b-c1 oxidoreductase"@en , "reduced ubiquinone-cytochrome c oxidoreductase"@en , "ubiquinone-cytochrome c oxidoreductase"@en , "reduced coenzyme Q-cytochrome c reductase"@en , "coenzyme QH2-cytochrome c reductase"@en , "ubihydroquinol:cytochrome c oxidoreductase"@en , "reduced ubiquinone-cytochrome c reductase complex III"@en , "mitochondrial electron transport complex III"@en , "ubiquinol-cytochrome c1 oxidoreductase"@en , "ubiquinol-cytochrome c oxidoreductase"@en , "ubiquinol-cytochrome-c reductase"@en , "complex III"@en , "dihydrocoenzyme Q-cytochrome c reductase"@en , "ubiquinone-cytochrome c reductase"@en , "coenzyme Q-cytochrome c reductase"@en , "ubiquinol:ferricytochrome-c oxidoreductase"@en , "ubiquinol-cytochrome c2 reductase"@en , "ubiquinone--cytochrome-c oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008121"^^xsd:string ; + owl:hasValue "1.10.2.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.10.2.2-RXN"^^xsd:string ; + owl:hasValue "1.10.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.10.2.2"^^xsd:string ; + owl:hasValue "GO:0008121"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -266100,6 +266100,18 @@ bo:25275 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25275"@en . +bo:25363 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.1.3.45"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.1.3.45"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25363"@en . + bo:10053 a owl:NamedIndividual , bo:792 , sybio:Protein ; rdfs:comment "BSU08760;sporulation-control gene"@en , "Sporulation-control protein spo0M;"@en ; rdfs:label "spo0M"@en , "Spo0M"@en , "YgaI"@en , "BSU08760"@en ; @@ -266117,18 +266129,6 @@ bo:10053 a owl:NamedIndividual , bo:792 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10053"@en . -bo:25363 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.1.3.45"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.45"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25363"@en . - bo:25451 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "3-methyl-2-oxobutanoate dehydrogenasecomplexes:3-methyl-2-oxobutanoate dehydrogenasea part of multi-step reaction (see R01702+R04097+R07618, possiblyidentical to R01651)subsequently R04097TPP-dependent enzyme (see R07601+R07602) - reversible"@en ; rdfs:label " <=> "@en , "[dihydrolipoyllysine-residue(2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase(decarboxylating, acceptor-2-methylpropanoylating)"@en , "C00233 + C15972 <=> C15975 + C00011"@en , "4-methyl-2-oxopentanoate"@en ; @@ -266299,11 +266299,11 @@ bo:13691 a owl:NamedIndividual , sybio:Compound ; rdfs:label "disulfide oxidoreductase"@en , "disulphide oxidoreductase"@en , "GO:0015036"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10513 \"disulfide oxidoreductase activity\""^^xsd:string ; + owl:hasValue "GO:0015036"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015036"^^xsd:string ; + owl:hasValue "10513 \"disulfide oxidoreductase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -266409,16 +266409,6 @@ bo:31449 a owl:NamedIndividual , sybio:CDS ; "21.0"@en ; tawny:name "31449"@en . -bo:27959 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "opuAA_RBS"@en ; - sybio:NA "TTAATATGGAGGGAAAAT"^^xsd:string ; - sybio:begin "320995"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "321012"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30781 ; - tawny:name "27959"@en . - bo:12649 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C9H10O5"@en ; rdfs:label "3-Methoxy-4-hydroxymandelate"@en , "Vanillylmandelic acid"@en , "C9H10O5"@en ; @@ -266429,6 +266419,16 @@ bo:12649 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05584"@en ; tawny:name "12649"@en . +bo:27959 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "opuAA_RBS"@en ; + sybio:NA "TTAATATGGAGGGAAAAT"^^xsd:string ; + sybio:begin "320995"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "321012"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30781 ; + tawny:name "27959"@en . + bo:19028 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "glucuronyl/N-acetylglucosaminyl transferase EXT2 [EC:2.4.1.2242.4.1.225]"@en ; rdfs:label "EXT2"@en ; @@ -266506,11 +266506,11 @@ bo:19116 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.30"^^xsd:string ; + owl:hasValue "SERINE-O-ACETTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SERINE-O-ACETTRAN-RXN"^^xsd:string ; + owl:hasValue "2.3.1.30"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -267278,6 +267278,17 @@ bo:32329 a sybio:CDS , owl:NamedIndividual ; "5.0"@en ; tawny:name "32329"@en . +bo:13529 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C6H10O4"@en ; + rdfs:label "C6H10O4"@en , "3-Hydroxy-5-oxohexanoate"@en ; + sybio:accession "47205580"^^xsd:string , "C16272"^^xsd:string , "109138-72-9"^^xsd:string ; + sybio:consumedBy bo:24192 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24187 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16272"@en ; + tawny:name "13529"@en . + bo:28839 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU36690"@en ; rdfs:label "BSU36690"@en , "spo0P"@en , "rapB"@en ; @@ -267305,17 +267316,6 @@ bo:28839 a sybio:CDS , owl:NamedIndividual ; "53.0"@en ; tawny:name "28839"@en . -bo:13529 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C6H10O4"@en ; - rdfs:label "C6H10O4"@en , "3-Hydroxy-5-oxohexanoate"@en ; - sybio:accession "47205580"^^xsd:string , "C16272"^^xsd:string , "109138-72-9"^^xsd:string ; - sybio:consumedBy bo:24192 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24187 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16272"@en ; - tawny:name "13529"@en . - a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: L-aspartate = beta-alanine + CO2."@en ; @@ -267326,15 +267326,15 @@ bo:13529 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.11"^^xsd:string ; + owl:hasValue "ASPDECARBOX-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPDECARBOX-RXN"^^xsd:string ; + owl:hasValue "PWY-5155"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5155"^^xsd:string ; + owl:hasValue "4.1.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -267414,11 +267414,11 @@ bo:13617 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004156"^^xsd:string ; + owl:hasValue "H2PTEROATESYNTH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "H2PTEROATESYNTH-RXN"^^xsd:string ; + owl:hasValue "GO:0004156"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -267475,11 +267475,11 @@ bo:13705 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "F16ALDOLASE-RXN"^^xsd:string ; + owl:hasValue "10435 \"fructose-bisphosphate aldolase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10435 \"fructose-bisphosphate aldolase activity\""^^xsd:string ; + owl:hasValue "F16ALDOLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -267886,6 +267886,12 @@ bo:27035 a sybio:MicroarrayExperiment , owl:NamedIndividua sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27123 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigG_csgA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27123"@en . + bo:21398 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "theophylline demethylase - irreversible"@en ; rdfs:label "cpd:C07130 => cpd:C07130"@en , "C07130 + C00005 + C00080 + C00007 <=> C16358 + C00006 + C00067 +C00001"@en ; @@ -267896,11 +267902,11 @@ bo:21398 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 , bo:11576 ; tawny:name "21398"@en . -bo:27123 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigG_csgA"@en ; +bo:27211 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "sigA_codY_citB"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27123"@en . + tawny:name "27211"@en . bo:21486 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; @@ -267913,12 +267919,6 @@ bo:21486 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11578 ; tawny:name "21486"@en . -bo:27211 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "sigA_codY_citB"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27211"@en . - bo:21574 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)"@en , "C03406 <=> C00122 + C00062"@en , "cpd:C03406 => cpd:C03406"@en ; @@ -268407,7 +268407,7 @@ bo:18877 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "uridine-5'-diphospho-N-acetyl-2-amino-2-deoxy-3-O-lactylglucose:NADP-oxidoreductase"@en , "UDP-N-acetylmuramate dehydrogenase"@en , "MurB reductase"@en , "UDP-GlcNAc-enoylpyruvate reductase"@en , "UDP-N-acetylenolpyruvoylglucosamine reductase"@en , "GO:0008762"@en , "uridine diphospho-N-acetylglucosamine-enolpyruvate reductase"@en , "UDP-N-acetylglucosamine-enoylpyruvate reductase"@en , "UDP-N-acetylmuramate:NADP+ oxidoreductase"@en , "uridine diphosphoacetylpyruvoylglucosamine reductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008762"^^xsd:string ; + owl:hasValue "UDPNACETYLMURAMATEDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -268415,7 +268415,7 @@ bo:18877 a owl:NamedIndividual , sybio:KOEN , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UDPNACETYLMURAMATEDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0008762"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -268512,16 +268512,6 @@ bo:15502 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305"@en ; tawny:name "15502"@en . -bo:16244 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; - rdfs:label "E5.5.1.1"@en ; - sybio:accession "0018849"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16245 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; - tawny:name "16244"@en . - bo:4591 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ydjJ_terminator"@en ; sybio:NA "AAAAAGTCCCGAGTGCTGATCACTCCGGACTTTTCACTGTATGAT"^^xsd:string ; @@ -268534,6 +268524,16 @@ bo:4591 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4590 ; tawny:name "4591"@en . +bo:16244 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; + rdfs:label "E5.5.1.1"@en ; + sybio:accession "0018849"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16245 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; + tawny:name "16244"@en . + bo:16332 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "aromatic amino acid hydroxylase [EC:1.14.16.-]"@en ; rdfs:label "E1.14.16.-"@en ; @@ -268830,27 +268830,27 @@ bo:17161 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05929"@en ; tawny:name "17161"@en . -bo:272 a owl:Class ; - rdfs:label "COG0801"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; +bo:1004 a owl:Class ; + rdfs:label "COG1360"@en ; + rdfs:subClassOf bo:208 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0801"^^xsd:string ; + owl:hasValue "COG1360"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "272"@en . + tawny:name "1004"@en . -bo:1004 a owl:Class ; - rdfs:label "COG1360"@en ; - rdfs:subClassOf bo:208 , sybio:COG ; +bo:272 a owl:Class ; + rdfs:label "COG0801"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1360"^^xsd:string ; + owl:hasValue "COG0801"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1004"@en . + tawny:name "272"@en . bo:10870 a bo:511 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU40540;putative transcriptional regulator"@en , "Uncharacterized HTH-type transcriptional regulator yybR"@en ; @@ -269144,6 +269144,16 @@ bo:5295 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5294 ; tawny:name "5295"@en . +bo:25967 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "oxygen oxidoreductase (ring cleaving)"@en , "C01433 + C00005 + C00080 + C00007 <=> C01852 + C00006 + 2 C00001"@en , "cpd:C01433 <=> cpd:C01433"@en , "loganin"@en ; + sybio:accession "RN:R03555"^^xsd:string ; + sybio:catalyzingClass bo:25968 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25967"@en . + bo:10657 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yxcA"@en , "hypothetical protein;BSU39830"@en ; rdfs:label "BSU39830"@en , "YxcA"@en , "yxcA"@en ; @@ -269161,16 +269171,6 @@ bo:10657 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10657"@en . -bo:25967 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "oxygen oxidoreductase (ring cleaving)"@en , "C01433 + C00005 + C00080 + C00007 <=> C01852 + C00006 + 2 C00001"@en , "cpd:C01433 <=> cpd:C01433"@en , "loganin"@en ; - sybio:accession "RN:R03555"^^xsd:string ; - sybio:catalyzingClass bo:25968 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25967"@en . - bo:17036 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "phosphatidylinositol 4-kinase [EC:2.7.1.67]"@en ; rdfs:label "E2.7.1.67"@en ; @@ -269468,25 +269468,6 @@ bo:11398 a owl:NamedIndividual , sybio:Protein , bo:400 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11398"@en . -bo:11486 a owl:NamedIndividual , bo:664 , sybio:Protein ; - rdfs:comment "BSU06190;putative phage replication protein"@en , "Uncharacterized protein ydjG"@en ; - rdfs:label "YdjG"@en , "BSU06190"@en , "ydjG"@en ; - sybio:AA "MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAARFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTISKQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQYEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAYLAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFYVLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVSLMMGGGF"@en ; - sybio:accession "BSU06190"^^xsd:string , "O34434"^^xsd:string ; - sybio:biologicalProcess "16.9 : Replicate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30992 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "38322.14"^^xsd:string ; - sybio:pI "5.503731"^^xsd:string ; - sybio:productType "h : extrachromosomal origin"^^xsd:string ; - sybio:relatedTo bo:6864 , bo:11487 , bo:9066 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11486"@en . - bo:30286 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26780"@en ; rdfs:label "BSU26780"@en , "yrdA"@en ; @@ -269545,6 +269526,25 @@ bo:26796 a bo:209 , bo:1832 , sybio:Protein , owl:NamedInd sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:11486 a owl:NamedIndividual , bo:664 , sybio:Protein ; + rdfs:comment "BSU06190;putative phage replication protein"@en , "Uncharacterized protein ydjG"@en ; + rdfs:label "YdjG"@en , "BSU06190"@en , "ydjG"@en ; + sybio:AA "MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAARFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTISKQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQYEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAYLAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFYVLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVSLMMGGGF"@en ; + sybio:accession "BSU06190"^^xsd:string , "O34434"^^xsd:string ; + sybio:biologicalProcess "16.9 : Replicate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30992 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "38322.14"^^xsd:string ; + sybio:pI "5.503731"^^xsd:string ; + sybio:productType "h : extrachromosomal origin"^^xsd:string ; + sybio:relatedTo bo:6864 , bo:11487 , bo:9066 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11486"@en . + bo:30374 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU30310"@en ; rdfs:label "ytwF"@en , "BSU30310"@en ; @@ -269570,22 +269570,6 @@ bo:30374 a sybio:CDS , owl:NamedIndividual ; "3.0"@en ; tawny:name "30374"@en . -bo:11574 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00230.png"@en ; - rdfs:label "Purine metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00230"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11551 , bo:11685 , bo:11580 , bo:11722 , bo:11710 , bo:11584 , bo:11605 , bo:11706 ; - sybio:derivesFrom bo:11575 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00230"@en ; - tawny:name "11574"@en . - bo:26884 a sybio:Protein , bo:241 , owl:NamedIndividual , bo:239 , bo:240 ; rdfs:comment "Bifunctional protein glmU;derived protein"@en , "BSU00500;UDP-N-acetylglucosamine pyrophosphorylase"@en ; rdfs:label "gcaD"@en , "GcaD"@en , "glmU"@en , "Tms26"@en , "BSU00500"@en , "Tms"@en ; @@ -269606,21 +269590,21 @@ bo:26884 a sybio:Protein , bo:241 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26884"@en . -bo:11662 a owl:NamedIndividual , sybio:Pathway , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00562.png"@en ; - rdfs:label "Inositol phosphate metabolism"@en ; +bo:11574 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00230.png"@en ; + rdfs:label "Purine metabolism"@en ; rdfs:subClassOf sybio:Pathway ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00562"^^xsd:string ; + owl:hasValue "BSU00230"^^xsd:string ; owl:onProperty sybio:accession ] ; - sybio:adjacentTo bo:11664 , bo:11553 ; - sybio:derivesFrom bo:11663 ; + sybio:adjacentTo bo:11551 , bo:11685 , bo:11580 , bo:11722 , bo:11710 , bo:11584 , bo:11605 , bo:11706 ; + sybio:derivesFrom bo:11575 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00562"@en ; - tawny:name "11662"@en . + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00230"@en ; + tawny:name "11574"@en . bo:30462 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32740"@en ; @@ -269667,6 +269651,22 @@ bo:26972 a bo:209 , owl:NamedIndividual , bo:403 , sybio:P sybio:taxId "224308"@en ; tawny:name "26972"@en . +bo:11662 a owl:NamedIndividual , sybio:Pathway , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00562.png"@en ; + rdfs:label "Inositol phosphate metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00562"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11664 , bo:11553 ; + sybio:derivesFrom bo:11663 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00562"@en ; + tawny:name "11662"@en . + bo:18041 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterinreductase [EC:1.5.99.11]"@en ; rdfs:label "E1.5.99.11"@en , "HMD"@en ; @@ -270140,11 +270140,11 @@ bo:18004 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008841"^^xsd:string ; + owl:hasValue "0004326"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004326"^^xsd:string ; + owl:hasValue "0008841"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -270537,16 +270537,6 @@ bo:31430 a sybio:CDS , owl:NamedIndividual ; "12.0"@en ; tawny:name "31430"@en . -bo:27940 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "alkA_RBS"@en ; - sybio:NA "AAGATAAGGAGAATGAAAAA"^^xsd:string ; - sybio:begin "203478"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "203459"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30765 ; - tawny:name "27940"@en . - bo:12630 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C5H7NO5"@en ; rdfs:label "N-Formyl-L-aspartate"@en , "C5H7NO5"@en ; @@ -270558,6 +270548,16 @@ bo:12630 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01044"@en ; tawny:name "12630"@en . +bo:27940 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "alkA_RBS"@en ; + sybio:NA "AAGATAAGGAGAATGAAAAA"^^xsd:string ; + sybio:begin "203478"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "203459"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30765 ; + tawny:name "27940"@en . + bo:25043 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "2,6-Dimethyl-5-methylene-3-oxo-heptanoyl-CoA C-acetyltransferase"@en , "cpd:C11948 => cpd:C11948"@en , "C11948 + C00010 <=> C11949 + C00100"@en ; @@ -271053,11 +271053,11 @@ bo:15967 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "HYUB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047423"^^xsd:string ; + owl:hasValue "COG0146"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0146"^^xsd:string ; + owl:hasValue "0047423"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -271338,6 +271338,17 @@ bo:32310 a owl:NamedIndividual , sybio:CDS ; "4.0"@en ; tawny:name "32310"@en . +bo:13510 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C28H44N7O20P3S"@en ; + rdfs:label "C28H44N7O20P3S"@en , "3-Oxopimeloyl-CoA"@en , "3-Ketopimelyl-CoA"@en ; + sybio:accession "C06715"^^xsd:string , "8939"^^xsd:string , "15492"^^xsd:string ; + sybio:consumedBy bo:24207 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24200 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06715"@en ; + tawny:name "13510"@en . + bo:28820 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU36110"@en ; rdfs:label "ywrC"@en , "BSU36110"@en ; @@ -271363,17 +271374,6 @@ bo:28820 a owl:NamedIndividual , sybio:CDS ; "13.0"@en ; tawny:name "28820"@en . -bo:13510 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C28H44N7O20P3S"@en ; - rdfs:label "C28H44N7O20P3S"@en , "3-Oxopimeloyl-CoA"@en , "3-Ketopimelyl-CoA"@en ; - sybio:accession "C06715"^^xsd:string , "8939"^^xsd:string , "15492"^^xsd:string ; - sybio:consumedBy bo:24207 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24200 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06715"@en ; - tawny:name "13510"@en . - bo:9827 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein ydhH;"@en , "conserved hypothetical protein;BSU05760"@en ; rdfs:label "BSU05760"@en , "ydhH"@en , "YdhH"@en ; @@ -271680,11 +271680,11 @@ bo:1821 a owl:Class ; rdfs:label "S-adenosylmethioninamine biosynthetic process"@en , "S-adenosylmethioninamine formation"@en , "S-adenosylmethioninamine anabolism"@en , "S-adenosylmethioninamine synthesis"@en , "S-adenosylmethioninamine biosynthesis"@en , "GO:0006557"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006745"^^xsd:string ; + owl:hasValue "GO:0006557"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006557"^^xsd:string ; + owl:hasValue "GO:0006745"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -272711,7 +272711,7 @@ bo:18557 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "GO:0008442"@en , "3-hydroxyisobutyrate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "24621 \"3-hydroxyisobutyrate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -272719,7 +272719,7 @@ bo:18557 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "24621 \"3-hydroxyisobutyrate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -273099,6 +273099,17 @@ bo:10198 a bo:601 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10198"@en . +bo:25596 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C00085 + C00118 <=> C00279 + C00231"@en , "D-glyceraldehyde-3-phosphate glycolaldehydetransferase"@en , "cpd:C00085 <=> cpd:C00085"@en , "D-Fructose 6-phosphate"@en ; + sybio:accession "RN:R01067"^^xsd:string ; + sybio:catalyzedBy bo:19719 ; + sybio:catalyzingClass bo:19720 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25596"@en . + bo:10286 a bo:786 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU23950"@en , "Uncharacterized protein yqjA"@en ; rdfs:label "yqjA"@en , "BSU23950"@en , "YqjA"@en ; @@ -273116,17 +273127,6 @@ bo:10286 a bo:786 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10286"@en . -bo:25596 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C00085 + C00118 <=> C00279 + C00231"@en , "D-glyceraldehyde-3-phosphate glycolaldehydetransferase"@en , "cpd:C00085 <=> cpd:C00085"@en , "D-Fructose 6-phosphate"@en ; - sybio:accession "RN:R01067"^^xsd:string ; - sybio:catalyzedBy bo:19719 ; - sybio:catalyzingClass bo:19720 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25596"@en . - bo:16011 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "ornithine decarboxylase [EC:4.1.1.17]"@en ; rdfs:label "ODC1"@en , "E4.1.1.17"@en , "SPEF"@en , "SPEC"@en ; @@ -273137,6 +273137,16 @@ bo:16011 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01581"@en ; tawny:name "16011"@en . +bo:25684 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label "G13036 + C00001 <=> G13037 + C00059"@en , " => "@en ; + sybio:accession "RN:R07814"^^xsd:string ; + sybio:catalyzingClass bo:25685 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25684"@en . + bo:10374 a sybio:Protein , bo:461 , owl:NamedIndividual ; rdfs:comment "BSU28240;putative hydrolase"@en , "TPR repeat-containing protein ysoA"@en ; rdfs:label "YsoA"@en , "BSU28240"@en , "ysoA"@en ; @@ -273154,15 +273164,16 @@ bo:10374 a sybio:Protein , bo:461 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10374"@en . -bo:25684 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label "G13036 + C00001 <=> G13037 + C00059"@en , " => "@en ; - sybio:accession "RN:R07814"^^xsd:string ; - sybio:catalyzingClass bo:25685 ; +bo:25772 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "multi-step reaction (isomerization, carboxylation, hydration andcleavage) - reversible"@en ; + rdfs:label "C01182 + C00011 + C00001 <=> 2 C00197"@en , "cpd:C00011 + cpd:C01182 <=> cpd:C00011 + cpd:C01182"@en , "3-phospho-D-glycerate carboxy-lyase (dimerizing;D-ribulose-1,5-bisphosphate-forming)"@en ; + sybio:accession "RN:R00024"^^xsd:string ; + sybio:catalyzedBy bo:17533 , bo:17530 ; + sybio:catalyzingClass bo:24164 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25684"@en . + tawny:name "25772"@en . bo:10462 a owl:NamedIndividual , sybio:Protein , bo:745 ; rdfs:comment "BSU32040;amino acid transporter"@en , "Putative amino acid transporter yuiF"@en ; @@ -273183,17 +273194,6 @@ bo:10462 a owl:NamedIndividual , sybio:Protein , bo:745 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10462"@en . -bo:25772 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "multi-step reaction (isomerization, carboxylation, hydration andcleavage) - reversible"@en ; - rdfs:label "C01182 + C00011 + C00001 <=> 2 C00197"@en , "cpd:C00011 + cpd:C01182 <=> cpd:C00011 + cpd:C01182"@en , "3-phospho-D-glycerate carboxy-lyase (dimerizing;D-ribulose-1,5-bisphosphate-forming)"@en ; - sybio:accession "RN:R00024"^^xsd:string ; - sybio:catalyzedBy bo:17533 , bo:17530 ; - sybio:catalyzingClass bo:24164 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25772"@en . - bo:6779 a bo:209 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU34840"@en ; rdfs:label "BSU34840"@en , "YvcB"@en ; @@ -273209,6 +273209,15 @@ bo:6779 a bo:209 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "6779"@en . +bo:25860 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "unclear reaction, AVLB synthase, H2O2-dependent enzyme - reversible"@en ; + rdfs:label "C01626 + C09107 <=> C11641"@en , "cpd:C09107 <=> cpd:C09107"@en ; + sybio:accession "RN:R05858"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25860"@en . + bo:10550 a sybio:Protein , owl:NamedIndividual , bo:618 ; rdfs:comment "conserved hypothetical protein;BSU36080"@en , "Uncharacterized protein ywrF"@en ; rdfs:label "ywrF"@en , "YwrF"@en , "BSU36080"@en ; @@ -273226,15 +273235,6 @@ bo:10550 a sybio:Protein , owl:NamedIndividual , bo:618 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10550"@en . -bo:25860 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "unclear reaction, AVLB synthase, H2O2-dependent enzyme - reversible"@en ; - rdfs:label "C01626 + C09107 <=> C11641"@en , "cpd:C09107 <=> cpd:C09107"@en ; - sybio:accession "RN:R05858"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25860"@en . - bo:6867 a bo:909 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU12130"@en ; rdfs:label "YjfC"@en , "BSU12130"@en ; @@ -273386,11 +273386,11 @@ bo:22009 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "biosynthesis"@en , "GO:0009058"@en , "biosynthetic process"@en , "synthesis"@en , "anabolism"@en , "formation"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Anabolism"^^xsd:string ; + owl:hasValue "GO:0009058"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009058"^^xsd:string ; + owl:hasValue "Anabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -273442,6 +273442,18 @@ bo:11291 a sybio:Protein , bo:339 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11291"@en . +bo:19349 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from gene annotation"@en ; + rdfs:label "2.1.1.107"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.1.1.107"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "19349"@en . + a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of any of the menaquinones, any of the quinone-derived compounds synthesized by intestinal bacteria. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones have vitamin K activity and are known as vitamin K2."@en ; @@ -273458,18 +273470,6 @@ bo:11291 a sybio:Protein , bo:339 , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:19349 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from gene annotation"@en ; - rdfs:label "2.1.1.107"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.107"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "19349"@en . - bo:31858 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU39010"@en ; rdfs:label "BSU39010"@en , "yxjB"@en ; @@ -273566,11 +273566,11 @@ bo:19613 a owl:NamedIndividual , sybio:EC , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.33"^^xsd:string ; + owl:hasValue "3-ISOPROPYLMALISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-ISOPROPYLMALISOM-RXN"^^xsd:string ; + owl:hasValue "4.2.1.33"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -273968,25 +273968,6 @@ bo:32951 a sybio:KinaseEncodingCDS , owl:NamedIndividual , sy sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu34070"@en ; tawny:name "32951"@en . -bo:11078 a sybio:Protein , bo:1077 , owl:NamedIndividual ; - rdfs:comment "Probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase"@en , "BSU35530;UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl-1-P transferase"@en ; - rdfs:label "TagO"@en , "YvhI"@en , "BSU35530"@en , "tagO"@en ; - sybio:AA "MLDERMIRIVVAFIVSLLTVLIITPIVKRIAIKIGAVDQPSNRKVHDKIMPRMGGLAIFIGVVAGVLASGIYTETRMTAITVGAFIIIVLGILDDKYQLSAKVKFLIQLGVAIMIVSTGLKMDFFSVPFLTERFELGWMAYPLTVLWIVGITNAINLIDGLDGLAAGLSVIGLSTIAVMALSGGKVLILSLSLVVIASTLGFLFYNFHPAKIFMGDTGSLFLGYSISILSLLGLYKSVTLFSIVIPIIILGVPIFDTTFAIIRRILNKQPISAPDKSHIHHRLMAFGLSHRMSVLVIYLIGFIFSISAIVLKSATIWLSLFIIFILIIFMQIIAEVTGLVNEKFKPFTKFYKRLVKRN"@en ; - sybio:accession "BSU35530"^^xsd:string , "O34753"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30577 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "39361.265"^^xsd:string ; - sybio:pI "10.023674"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11089 , bo:26845 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11078"@en . - bo:26388 a bo:585 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Alanine racemase 2;derived protein"@en , "BSU17640;alanine racemase"@en ; rdfs:label "alrB"@en , "BSU17640"@en , "YncD"@en , "AlrB"@en , "alr2"@en ; @@ -274007,25 +273988,24 @@ bo:26388 a bo:585 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26388"@en . -bo:11166 a bo:1652 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "cytochrome bd ubiquinol oxidase (subunit I);BSU38760;"@en , "Cytochrome d ubiquinol oxidase subunit 1"@en ; - rdfs:label "CydA"@en , "cydA"@en , "BSU38760"@en , "YxkK"@en ; - sybio:AA "MSELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLINFAVGVVTGILQEFQFGLNWSDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRLPKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKNGRAEMNDFGALITNPQLWVEFPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAEHLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGSVKGMKTLQAEYEKIYGKGDYIPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTTAQSVSPNVTAGSLLFSIIAFGVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS"@en ; - sybio:accession "P94364"^^xsd:string , "BSU38760"^^xsd:string ; - sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; +bo:11078 a sybio:Protein , bo:1077 , owl:NamedIndividual ; + rdfs:comment "Probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase"@en , "BSU35530;UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl-1-P transferase"@en ; + rdfs:label "TagO"@en , "YvhI"@en , "BSU35530"@en , "tagO"@en ; + sybio:AA "MLDERMIRIVVAFIVSLLTVLIITPIVKRIAIKIGAVDQPSNRKVHDKIMPRMGGLAIFIGVVAGVLASGIYTETRMTAITVGAFIIIVLGILDDKYQLSAKVKFLIQLGVAIMIVSTGLKMDFFSVPFLTERFELGWMAYPLTVLWIVGITNAINLIDGLDGLAAGLSVIGLSTIAVMALSGGKVLILSLSLVVIASTLGFLFYNFHPAKIFMGDTGSLFLGYSISILSLLGLYKSVTLFSIVIPIIILGVPIFDTTFAIIRRILNKQPISAPDKSHIHHRLMAFGLSHRMSVLVIYLIGFIFSISAIVLKSATIWLSLFIIFILIIFMQIIAEVTGLVNEKFKPFTKFYKRLVKRN"@en ; + sybio:accession "BSU35530"^^xsd:string , "O34753"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:28823 ; + sybio:encodedBy bo:30577 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "1.4 : Membrane bioenergetics (electron transport chain and ATP synthase)"^^xsd:string ; - sybio:interactsWith bo:9790 , bo:11165 ; + sybio:hasFunction , , ; sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "52290.505"^^xsd:string ; - sybio:pI "8.779961"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "39361.265"^^xsd:string ; + sybio:pI "10.023674"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11089 , bo:26845 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11166"@en . + tawny:name "11078"@en . bo:26476 a bo:1377 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU23080;3-dehydroquinate dehydratase"@en , "derived protein;3-dehydroquinate dehydratase"@en ; @@ -274046,6 +274026,26 @@ bo:26476 a bo:1377 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26476"@en . +bo:11166 a bo:1652 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "cytochrome bd ubiquinol oxidase (subunit I);BSU38760;"@en , "Cytochrome d ubiquinol oxidase subunit 1"@en ; + rdfs:label "CydA"@en , "cydA"@en , "BSU38760"@en , "YxkK"@en ; + sybio:AA "MSELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLINFAVGVVTGILQEFQFGLNWSDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRLPKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKNGRAEMNDFGALITNPQLWVEFPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAEHLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGSVKGMKTLQAEYEKIYGKGDYIPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTTAQSVSPNVTAGSLLFSIIAFGVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS"@en ; + sybio:accession "P94364"^^xsd:string , "BSU38760"^^xsd:string ; + sybio:biologicalProcess "16.10 : Respire"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:28823 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "1.4 : Membrane bioenergetics (electron transport chain and ATP synthase)"^^xsd:string ; + sybio:interactsWith bo:9790 , bo:11165 ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "52290.505"^^xsd:string ; + sybio:pI "8.779961"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11166"@en . + bo:30054 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21230"@en ; rdfs:label "yomT"@en , "BSU21230"@en ; @@ -274071,26 +274071,6 @@ bo:30054 a sybio:CDS , owl:NamedIndividual ; "1.0"@en ; tawny:name "30054"@en . -bo:11254 a sybio:Protein , owl:NamedIndividual , bo:485 ; - rdfs:comment "HTH-type transcriptional regulator bsdA"@en , "putative transcriptional regulator (LysR family);BSU03620"@en ; - rdfs:label "bsdA"@en , "BSU03620"@en , "YclA"@en ; - sybio:AA "LDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELGVVLFDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYCAALMLEKVTQIKERYPHLTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQLDDIPCVLVLSDEAGYPCGDTIKMVDIPSFPLILLRPVNGKGVYNQVMNEFHRLNLEPRIVCECHDSATLLSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTDSYLPKPAQQFLDLF"@en ; - sybio:accession "P94403"^^xsd:string , "BSU03620"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:30723 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "32968.185"^^xsd:string ; - sybio:pI "6.013435"^^xsd:string ; - sybio:productType "pr : putative regulator"^^xsd:string ; - sybio:relatedTo bo:9044 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11254"@en ; - owl:sameAs bo:6628 . - bo:26564 a bo:1235 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "3-isopropylmalate dehydratase small subunit;derived protein"@en , "BSU28250;3-isopropylmalate dehydratase (small subunit)"@en ; rdfs:label "LeuD"@en , "BSU28250"@en , "leuD"@en ; @@ -274111,6 +274091,26 @@ bo:26564 a bo:1235 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26564"@en . +bo:11254 a sybio:Protein , owl:NamedIndividual , bo:485 ; + rdfs:comment "HTH-type transcriptional regulator bsdA"@en , "putative transcriptional regulator (LysR family);BSU03620"@en ; + rdfs:label "bsdA"@en , "BSU03620"@en , "YclA"@en ; + sybio:AA "LDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELGVVLFDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYCAALMLEKVTQIKERYPHLTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQLDDIPCVLVLSDEAGYPCGDTIKMVDIPSFPLILLRPVNGKGVYNQVMNEFHRLNLEPRIVCECHDSATLLSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTDSYLPKPAQQFLDLF"@en ; + sybio:accession "P94403"^^xsd:string , "BSU03620"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:30723 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "32968.185"^^xsd:string ; + sybio:pI "6.013435"^^xsd:string ; + sybio:productType "pr : putative regulator"^^xsd:string ; + sybio:relatedTo bo:9044 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11254"@en ; + owl:sameAs bo:6628 . + bo:30142 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU23050"@en ; rdfs:label "BSU23050"@en , "fmnP"@en , "ypaA"@en ; @@ -274425,19 +274425,19 @@ bo:13938 a owl:NamedIndividual , sybio:Compound ; rdfs:label "5 10-methenyl-THF cyclohydrolase"@en , "citrovorum factor cyclodehydrase"@en , "formyl-methenyl-methylenetetrahydrofolate synthetase"@en , "5 10-methenyltetrahydrofolate 5-hydrolase"@en , "methenyltetrahydrofolate cyclohydrolase"@en , "GO:0004477"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11565 \"methenyltetrahydrofolate cyclohydrolase activity\""^^xsd:string ; + owl:hasValue "3.5.4.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "METHENYLTHFCYCLOHYDRO-RXN"^^xsd:string ; + owl:hasValue "GO:0004477"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004477"^^xsd:string ; + owl:hasValue "METHENYLTHFCYCLOHYDRO-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.4.9"^^xsd:string ; + owl:hasValue "11565 \"methenyltetrahydrofolate cyclohydrolase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -274472,10 +274472,10 @@ bo:32826 a sybio:CDS , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-D-galactosides."@en ; - rdfs:label "sumiklat"@en , "beta-lactosidase"@en , "beta-D-galactoside galactohydrolase"@en , "oryzatym"@en , "S 2107"@en , "maxilact"@en , "lactozym"@en , "beta-galactosidase"@en , "lactose hydrolysis"@en , "activity"@en , "GO:0004565"@en , "hydrolact"@en , "trilactase"@en , "beta-D-lactosidase"@en , "beta-D-galactanase"@en ; + rdfs:label "sumiklat"@en , "beta-D-galactoside galactohydrolase"@en , "beta-lactosidase"@en , "oryzatym"@en , "S 2107"@en , "maxilact"@en , "lactozym"@en , "beta-galactosidase"@en , "lactose hydrolysis"@en , "activity"@en , "GO:0004565"@en , "hydrolact"@en , "trilactase"@en , "beta-D-lactosidase"@en , "beta-D-galactanase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.23-RXN"^^xsd:string ; + owl:hasValue "BGALACT-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -274483,7 +274483,7 @@ bo:32826 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BGALACT-PWY"^^xsd:string ; + owl:hasValue "3.2.1.23-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -274765,11 +274765,11 @@ bo:14767 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "UGT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "0003981"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003981"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -274988,7 +274988,7 @@ bo:21983 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "phosphogluconic acid dehydrogenase"@en , "GO:0004616"@en , "6-phospho-D-gluconate:NADP+ 2-oxidoreductase"@en , "6-phospho-D-gluconate dehydrogenase"@en , "phosphogluconate dehydrogenase (decarboxylating)"@en , "6-phosphogluconic dehydrogenase"@en , "6-phosphogluconic carboxylase"@en , "6PGD"@en , "6-phosphogluconate dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6PGLUCONDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0004616"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -274996,7 +274996,7 @@ bo:21983 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004616"^^xsd:string ; + owl:hasValue "6PGLUCONDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -275308,97 +275308,108 @@ bo:21858 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "21858"@en . +bo:1274 a owl:Class ; + rdfs:label "COG0514"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0514"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1274"@en . + a owl:NamedIndividual , owl:Class ; rdfs:comment "Any cellular process that activates or increases the frequency, rate or extent of transcription."@en ; rdfs:label "up-regulation of transcription"@en , "activation of transcription"@en , "GO:0045941"@en , "upregulation of transcription"@en , "up regulation of transcription"@en , "positive regulation of cellular transcription"@en , "stimulation of transcription"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531509 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "600701 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526602 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "552533 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600701 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "592900 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "586040 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "581993 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449105 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "602624 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536900 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "517769 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507870 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "597454 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595594 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "568790 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568790 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "GO:0045941"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597454 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "558161 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0045941"^^xsd:string ; + owl:hasValue "598220 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598220 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "470217 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "163765 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "487903 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558161 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "547963 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517769 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "536900 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602624 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "595594 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592900 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "449105 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552533 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "531509 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547963 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "526602 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470217 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "507870 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487903 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "586040 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581993 \"ChREBP activates metabolic gene expression\""^^xsd:string ; + owl:hasValue "163765 \"ChREBP activates metabolic gene expression\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -275413,17 +275424,6 @@ bo:21858 a owl:Class , sybio:EC , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:regulatedBy . -bo:1274 a owl:Class ; - rdfs:label "COG0514"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0514"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1274"@en . - bo:21946 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "NADP+ oxidoreductase (deaminating)"@en , "meso-2,6-diaminoheptanedioate"@en , "C00680 + C00006 + C00001 <=> C03871 + C00014 + C00005 + C00080"@en , "cpd:C03871 <=> cpd:C03871"@en ; @@ -275505,107 +275505,107 @@ bo:15559 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "pentose phosphate pathway"@en , "pentose-phosphate pathway"@en , "hexose monophosphate pathway"@en , "pentose-phosphate shunt"@en , "GO:0006098"@en , "pentose phosphate shunt"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602475 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "600587 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Pentose_phosphate_pathway"^^xsd:string ; + owl:hasValue "598171 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507402 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "Pentose_phosphate_pathway"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006098"^^xsd:string ; + owl:hasValue "526279 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PENTOSE-P-PWY"^^xsd:string ; + owl:hasValue "542236 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487445 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "557780 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585906 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "581595 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526279 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "448609 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547586 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "PENTOSE-P-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542236 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "531147 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "71336 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "568393 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581595 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "469908 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599662 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "71336 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552195 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "597314 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557780 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "547586 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595341 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "517404 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448609 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "602475 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517404 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "585906 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568393 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "592491 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536518 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "595341 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592491 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "599662 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597314 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "487445 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598171 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "GO:0006098"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600587 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "552195 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469908 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "507402 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531147 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; + owl:hasValue "536518 \"Pentose phosphate pathway (hexose monophosphate shunt)\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -275672,11 +275672,11 @@ bo:16477 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "NOVM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9L9F5"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "Q9L9F5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -275694,32 +275694,32 @@ bo:15911 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796"@en ; tawny:name "15911"@en . -bo:16565 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "phosphonoacetate hydrolase [EC:3.11.1.2]"@en ; - rdfs:label "PHNA"@en ; - sybio:accession "COG2824"^^xsd:string , "0047400"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16566 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06193"@en ; - tawny:name "16565"@en . - a owl:Class ; rdfs:comment "Any process that modulates the ability of the translational apparatus to interpret the genetic code."@en ; rdfs:label "GO:0006450"@en , "regulation of translational fidelity"@en , "regulation of translational accuracy"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006450"^^xsd:string ; + owl:hasValue "GO:0000029"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000029"^^xsd:string ; + owl:hasValue "GO:0006450"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16565 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "phosphonoacetate hydrolase [EC:3.11.1.2]"@en ; + rdfs:label "PHNA"@en ; + sybio:accession "COG2824"^^xsd:string , "0047400"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16566 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06193"@en ; + tawny:name "16565"@en . + bo:28148 a sybio:Shim , owl:NamedIndividual ; rdfs:label "trpP_RBS_upstream"@en ; sybio:NA "CTTCGCAATAAATGATGAGCATATTATTGGAGGGCAAAAAGCT"^^xsd:string ; @@ -275730,16 +275730,6 @@ bo:28148 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28147 ; tawny:name "28148"@en . -bo:16653 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]"@en ; - rdfs:label "E3.5.2.9"@en ; - sybio:accession "0017168"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16652 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01469"@en ; - tawny:name "16653"@en . - bo:28236 a sybio:RBS , owl:NamedIndividual ; rdfs:label "ytxC_RBS"@en ; sybio:NA "TAAGGGGGGACAAAC"^^xsd:string ; @@ -275750,16 +275740,26 @@ bo:28236 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31945 ; tawny:name "28236"@en . +bo:16653 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]"@en ; + rdfs:label "E3.5.2.9"@en ; + sybio:accession "0017168"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16652 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01469"@en ; + tawny:name "16653"@en . + bo:16741 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "sucrose phosphorylase [EC:2.4.1.7]"@en ; rdfs:label "E2.4.1.7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0366"^^xsd:string ; + owl:hasValue "0009018"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009018"^^xsd:string ; + owl:hasValue "COG0366"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -276036,17 +276036,6 @@ bo:17482 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00224"@en ; tawny:name "17482"@en . -bo:593 a owl:Class ; - rdfs:label "COG0582"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0582"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "593"@en . - bo:29065 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BG11113"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -276072,6 +276061,17 @@ bo:1325 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1325"@en . +bo:593 a owl:Class ; + rdfs:label "COG0582"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0582"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "593"@en . + bo:17570 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "acetate CoA-transferase alpha subunit [EC:2.8.3.8]"@en ; rdfs:label "ATOD"@en ; @@ -276082,17 +276082,6 @@ bo:17570 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035"@en ; tawny:name "17570"@en . -bo:681 a owl:Class ; - rdfs:label "COG1828"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1828"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "681"@en . - bo:29153 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00210"@en ; rdfs:label "recM"@en , "recR"@en , "BSU00210"@en ; @@ -276129,6 +276118,17 @@ bo:1413 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1413"@en . +bo:681 a owl:Class ; + rdfs:label "COG1828"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1828"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "681"@en . + bo:29241 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU02200"@en ; rdfs:label "ybfG"@en , "BSU02200"@en ; @@ -276224,19 +276224,6 @@ bo:4875 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4874 ; tawny:name "4875"@en . -bo:16528 a owl:NamedIndividual , owl:Class , sybio:KOEN ; - rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; - rdfs:label "PHPI"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q5IW33"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; - tawny:name "16528"@en . - a owl:Class , owl:NamedIndividual ; rdfs:comment "The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA."@en ; @@ -276247,26 +276234,29 @@ bo:16528 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006413"^^xsd:string ; + owl:hasValue "GO:0006454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006454"^^xsd:string ; + owl:hasValue "GO:0006413"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:partOf . -bo:16616 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "3-cyanoalanine hydratase [EC:4.2.1.65]"@en ; - rdfs:label "E4.2.1.65"@en ; - sybio:accession "Q5QGZ8"^^xsd:string , "0047558"^^xsd:string , "Q3LRV4"^^xsd:string ; +bo:16528 a owl:NamedIndividual , owl:Class , sybio:KOEN ; + rdfs:comment "carboxyphosphoenolpyruvate mutase"@en ; + rdfs:label "PHPI"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q5IW33"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16617 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13036"@en ; - tawny:name "16616"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12909"@en ; + tawny:name "16528"@en . bo:4963 a sybio:Operon , owl:NamedIndividual ; rdfs:label "clpE"@en ; @@ -276276,6 +276266,16 @@ bo:4963 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "clpE"@en ; tawny:name "4963"@en . +bo:16616 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "3-cyanoalanine hydratase [EC:4.2.1.65]"@en ; + rdfs:label "E4.2.1.65"@en ; + sybio:accession "Q5QGZ8"^^xsd:string , "0047558"^^xsd:string , "Q3LRV4"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16617 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13036"@en ; + tawny:name "16616"@en . + bo:16704 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "sucrose synthase [EC:2.4.1.13]"@en ; rdfs:label "E2.4.1.13"@en ; @@ -276466,7 +276466,7 @@ bo:468 a owl:Class ; rdfs:label "GO:0047298"@en , "L-3-aminoisobutyrate transaminase"@en , "aminotransferase"@en , "L-3-aminoisobutyrate aminotransferase"@en , "beta-aminoisobutyrate-alpha-ketoglutarate transaminase"@en , "(S)-3-amino-2-methylpropionate transaminase"@en , "L-3-aminoisobutyric aminotransferase"@en , "L-AIBAT"@en , "beta-aminobutyric transaminase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047298"^^xsd:string ; + owl:hasValue "2.6.1.22-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -276474,7 +276474,7 @@ bo:468 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.22-RXN"^^xsd:string ; + owl:hasValue "GO:0047298"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -276537,6 +276537,18 @@ bo:556 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "556"@en . +bo:5880 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "lytABC_terminator"@en ; + sybio:NA "CGAAAGAGACAAATCTAATCACAGATTTGTCTCTTTTTTATATGAAAT"^^xsd:string ; + sybio:annotatedSequence "CGAAA{left}GAGACAAATCT{/left}AATCAC{right}AGATTTGTCTC{/right}TTTTTTATATGAAAT"@en ; + sybio:begin "3659117"@en ; + sybio:deltaGo "-16.7"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3659070"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:5879 ; + tawny:name "5880"@en . + bo:17533 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]"@en ; rdfs:label "E4.1.1.39S"@en , "RBCS"@en ; @@ -276550,18 +276562,6 @@ bo:17533 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01601+K01602"@en ; tawny:name "17533"@en . -bo:5880 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "lytABC_terminator"@en ; - sybio:NA "CGAAAGAGACAAATCTAATCACAGATTTGTCTCTTTTTTATATGAAAT"^^xsd:string ; - sybio:annotatedSequence "CGAAA{left}GAGACAAATCT{/left}AATCAC{right}AGATTTGTCTC{/right}TTTTTTATATGAAAT"@en ; - sybio:begin "3659117"@en ; - sybio:deltaGo "-16.7"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3659070"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:5879 ; - tawny:name "5880"@en . - bo:29116 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU40020"@en ; sybio:accession "BSU40020"^^xsd:string ; @@ -277078,11 +277078,11 @@ bo:519 a owl:Class ; rdfs:label "cytidine diphosphoribitol pyrophosphorylase"@en , "D-ribitol-5-phosphate cytidylyltransferase"@en , "CTP:D-ribitol-5-phosphate cytidylyltransferase"@en , "CDP-ribitol diphosphorylase"@en , "ribitol 5-phosphate cytidylyltransferase"@en , "CDP-ribitol pyrophosphorylase"@en , "GO:0047349"@en , "CDP ribitol pyrophosphorylase"@en , "cytidine diphosphate ribitol pyrophosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.40"^^xsd:string ; + owl:hasValue "2.7.7.40-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.40-RXN"^^xsd:string ; + owl:hasValue "2.7.7.40"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -277602,11 +277602,11 @@ bo:19066 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GMHB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0241"^^xsd:string ; + owl:hasValue "0016788"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016788"^^xsd:string ; + owl:hasValue "COG0241"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -277786,6 +277786,17 @@ bo:25276 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11743 ; tawny:name "25276"@en . +bo:25364 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C03845 <=> cpd:C03845"@en , "5alpha-Cholest-7-en-3beta-ol delta7-delta8-isomerase"@en , "C01189 <=> C03845"@en ; + sybio:accession "RN:R03353"^^xsd:string ; + sybio:catalyzedBy bo:19069 ; + sybio:catalyzingClass bo:25365 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25364"@en . + bo:10054 a sybio:Protein , bo:793 , bo:794 , owl:NamedIndividual ; rdfs:comment "Uncharacterized peptidase ygaJ"@en , "putative peptidase;BSU08780"@en ; rdfs:label "YgaJ"@en , "ygaJ"@en , "BSU08780"@en ; @@ -277804,17 +277815,6 @@ bo:10054 a sybio:Protein , bo:793 , bo:794 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "10054"@en . -bo:25364 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C03845 <=> cpd:C03845"@en , "5alpha-Cholest-7-en-3beta-ol delta7-delta8-isomerase"@en , "C01189 <=> C03845"@en ; - sybio:accession "RN:R03353"^^xsd:string ; - sybio:catalyzedBy bo:19069 ; - sybio:catalyzingClass bo:25365 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25364"@en . - bo:25452 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "orphan"@en ; rdfs:label "C00157 + C00001 <=> C04230 + C06427"@en , " => "@en ; @@ -278142,7 +278142,7 @@ bo:19117 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "GLPX-SEBP"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050278"^^xsd:string ; + owl:hasValue "COG1494"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -278150,7 +278150,7 @@ bo:19117 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1494"^^xsd:string ; + owl:hasValue "0050278"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -278164,7 +278164,7 @@ bo:19117 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "D-alanyl-D-alanine-carboxypeptidase"@en , "GO:0009002"@en , "serine-type D-Ala-D-Ala carboxypeptidase"@en , "D-alanyl-D-alanine carboxypeptidase"@en , "D-alanyl carboxypeptidase"@en , "D-alanine carboxypeptidase"@en , "D-alanyl-D-alanine-cleaving-peptidase"@en , "DD-carboxypeptidase"@en , "DD-peptidase"@en , "DD-transpeptidase"@en , "D-alanyl-D-alanine-cleaving peptidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009002"^^xsd:string ; + owl:hasValue "3.4.16.4-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -278172,7 +278172,7 @@ bo:19117 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.16.4-RXN"^^xsd:string ; + owl:hasValue "GO:0009002"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -278374,7 +278374,7 @@ bo:25503 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "lipid degradation"@en , "lipid breakdown"@en , "lipid catabolism"@en , "lipid catabolic process"@en , "GO:0016042"@en , "lipolysis"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006724"^^xsd:string ; + owl:hasValue "Lipid_catabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -278382,7 +278382,7 @@ bo:25503 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Lipid_catabolism"^^xsd:string ; + owl:hasValue "GO:0006724"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -278666,19 +278666,19 @@ bo:13831 a sybio:Compound , owl:NamedIndividual ; rdfs:label "ATP:glycerol 3-phosphotransferase"@en , "glyceric kinase"@en , "glycerol kinase"@en , "GO:0004370"@en , "glycerokinase"@en , "ATP:glycerol-3-phosphotransferase"@en , "GK"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCEROL-KIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.30"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004370"^^xsd:string ; + owl:hasValue "10545 \"glycerol kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.30"^^xsd:string ; + owl:hasValue "GLYCEROL-KIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10545 \"glycerol kinase activity\""^^xsd:string ; + owl:hasValue "GO:0004370"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -279037,19 +279037,19 @@ bo:27161 a sybio:FFL , owl:NamedIndividual ; rdfs:label "transaminase A"@en , "glutamic--oxaloacetic transaminase"@en , "L-aspartate-alpha-ketoglutarate transaminase"@en , "L-aspartic aminotransferase"@en , "L-aspartate:2-oxoglutarate aminotransferase"@en , "glutamic oxalic transaminase"@en , "oxaloacetate transferase"@en , "glutamic--aspartic transaminase"@en , "aspartate alpha-ketoglutarate transaminase"@en , "glutamate-oxalacetate aminotransferase"@en , "AAT"@en , "aspartate-2-oxoglutarate transaminase"@en , "glutamic-aspartic aminotransferase"@en , "AspT"@en , "glutamate-oxalate transaminase"@en , "aspartate transaminase"@en , "L-aspartate-2-oxoglutarate-transaminase"@en , "aspartic aminotransferase"@en , "GO:0004069"@en , "aspartic acid aminotransferase"@en , "glutamate oxaloacetate transaminase"@en , "L-aspartate-2-oxoglutarate aminotransferase"@en , "GOT"@en , "2-oxoglutarate-glutamate aminotransferase"@en , "aspartate:2-oxoglutarate aminotransferase"@en , "glutamic-oxalacetic transaminase"@en , "L-aspartate transaminase"@en , "L-aspartate-2-ketoglutarate aminotransferase"@en , "aspartyl aminotransferase"@en , "oxaloacetate-aspartate aminotransferase"@en , "aspartate aminotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPAMINOTRANS-RXN"^^xsd:string ; + owl:hasValue "7220 \"L-aspartate:2-oxoglutarate aminotransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7220 \"L-aspartate:2-oxoglutarate aminotransferase activity\""^^xsd:string ; + owl:hasValue "2.6.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004069"^^xsd:string ; + owl:hasValue "ASPAMINOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.1"^^xsd:string ; + owl:hasValue "GO:0004069"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -279080,6 +279080,17 @@ bo:32418 a owl:NamedIndividual , sybio:CDS ; "14.0"@en ; tawny:name "32418"@en . +bo:13618 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C20H3CoN4R21"@en ; + rdfs:label "Methylcorrinoid"@en , "C20H3CoN4R21"@en , "Corrinoid protein Co2+-CH3"@en , "Methylcorrinoid protein"@en ; + sybio:accession "C06020"^^xsd:string , "8292"^^xsd:string ; + sybio:consumedBy bo:24472 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24445 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06020"@en ; + tawny:name "13618"@en . + bo:28928 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "asparagine synthetase (EC:6.3.5.4)"@en , "BSU30540"@en ; rdfs:label "asnB"@en , "asn"@en , "BSU30540"@en ; @@ -279107,17 +279118,6 @@ bo:28928 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu30540"@en ; tawny:name "28928"@en . -bo:13618 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C20H3CoN4R21"@en ; - rdfs:label "Methylcorrinoid"@en , "C20H3CoN4R21"@en , "Corrinoid protein Co2+-CH3"@en , "Methylcorrinoid protein"@en ; - sybio:accession "C06020"^^xsd:string , "8292"^^xsd:string ; - sybio:consumedBy bo:24472 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24445 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06020"@en ; - tawny:name "13618"@en . - bo:32506 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU12820"@en ; rdfs:label "spoIISB"@en , "BSU12820"@en ; @@ -279160,19 +279160,19 @@ bo:13706 a sybio:Compound , owl:NamedIndividual ; rdfs:label "fumarase"@en , "fumarate hydratase"@en , "hydro-lyase"@en , "GO:0004333"@en , "L-malate hydro-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10436 \"fumarate hydratase activity\""^^xsd:string ; + owl:hasValue "GO:0004333"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.2"^^xsd:string ; + owl:hasValue "FUMHYDR-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FUMHYDR-RXN"^^xsd:string ; + owl:hasValue "10436 \"fumarate hydratase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004333"^^xsd:string ; + owl:hasValue "4.2.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -279197,22 +279197,22 @@ bo:2795 a sybio:Promoter , sybio:ConstitutiveSigAPromoter a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + H2O + acetoacetyl-CoA = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA."@en ; - rdfs:label "HMG-CoA synthase"@en , "GO:0004421"@en , "3-hydroxy-3-methylglutaryl coenzyme A synthetase"@en , "hydroxymethylglutaryl coenzyme alpha-condensing enzyme"@en , "hydroxymethylglutaryl coenzyme A-condensing enzyme"@en , "3-hydroxy-3-methylglutaryl-coenzyme A synthase"@en , "3-hydroxy-3-methylglutaryl CoA synthetase"@en , "3-hydroxy-3-methylglutaryl-CoA synthase"@en , "acetoacetyl coenzyme A transacetase"@en , "hydroxymethylglutaryl coenzyme A synthase"@en , "hydroxymethylglutaryl-CoA synthase"@en , "beta-hydroxy-beta-methylglutaryl-CoA synthase"@en , "acetyl-CoA:acetoacetyl-CoA C-acetyltransferase"@en , "acetoacetyl-CoA-lyase"@en , "3-hydroxy-3-methylglutaryl coenzyme A synthase"@en ; + rdfs:label "HMG-CoA synthase"@en , "GO:0004421"@en , "3-hydroxy-3-methylglutaryl coenzyme A synthetase"@en , "hydroxymethylglutaryl coenzyme alpha-condensing enzyme"@en , "hydroxymethylglutaryl coenzyme A-condensing enzyme"@en , "3-hydroxy-3-methylglutaryl-coenzyme A synthase"@en , "3-hydroxy-3-methylglutaryl CoA synthetase"@en , "3-hydroxy-3-methylglutaryl-CoA synthase"@en , "acetoacetyl coenzyme A transacetase"@en , "hydroxymethylglutaryl coenzyme A synthase"@en , "hydroxymethylglutaryl-CoA synthase"@en , "acetyl-CoA:acetoacetyl-CoA C-acetyltransferase"@en , "acetoacetyl-CoA-lyase"@en , "beta-hydroxy-beta-methylglutaryl-CoA synthase"@en , "3-hydroxy-3-methylglutaryl coenzyme A synthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.3.10"^^xsd:string ; + owl:hasValue "HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "2.3.3.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004421"^^xsd:string ; + owl:hasValue "74169 \"hydroxymethylglutaryl-CoA synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "74169 \"hydroxymethylglutaryl-CoA synthase activity\""^^xsd:string ; + owl:hasValue "GO:0004421"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -279570,6 +279570,12 @@ bo:27036 a owl:NamedIndividual , sybio:MicroarrayExperimen sybio:targetExperiment "strain: BFS1109/pDG148-yvfU (trpC2 yvfT::pMUTIN2(Emr)/pDG148-yvfU),\nmedium: LB+1mM IPTG, temperature: 37 deg C,\nharvest point: OD600=0.31, middle logarithmic phase"@en ; tawny:name "27036"@en . +bo:27124 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigG_glcU"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27124"@en . + bo:21399 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "theophylline demethylase - irreversible"@en ; rdfs:label "C07130 + C00005 + C00080 + C00007 <=> C16357 + C00006 + C00067 +C00001"@en , "cpd:C07130 => cpd:C07130"@en ; @@ -279580,11 +279586,11 @@ bo:21399 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11576 , bo:11749 ; tawny:name "21399"@en . -bo:27124 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigG_glcU"@en ; +bo:27212 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "sigA_codY_srfAA"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27124"@en . + tawny:name "27212"@en . bo:21487 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; @@ -279597,12 +279603,6 @@ bo:21487 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11578 ; tawny:name "21487"@en . -bo:27212 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "sigA_codY_srfAA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27212"@en . - bo:21575 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C02362 => cpd:C02362"@en , "2-Oxosuccinamate amidohydrolase"@en , "C02362 + C00001 <=> C00036 + C00014"@en ; @@ -279866,23 +279866,6 @@ bo:29808 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "29808"@en . -bo:3499 a sybio:PositivelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; - rdfs:comment "Positive"@en ; - rdfs:label "AbrB_rbsR"@en ; - sybio:NA "CTATGTAAACGGTTACATAAACAAGGAGGAGCT"^^xsd:string ; - sybio:annotatedSequence "CTATGTAAACGGTTACATAAACAAGGAGGAGCT"@en ; - sybio:begin "3701375"@en ; - sybio:boundBy bo:6849 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3701407"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2895 ; - sybio:partOf bo:27697 ; - sybio:pmid "7592460"^^xsd:string ; - sybio:regulationType "Positive"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3499"@en . - bo:9224 a owl:NamedIndividual , bo:443 , sybio:Protein ; rdfs:comment "Uncharacterized protein ykvT"@en , "BSU13820;cell wall hydrolase related to spore cortex-lytic enzymes"@en ; rdfs:label "ykvT"@en , "YkvT"@en , "BSU13820"@en ; @@ -279904,6 +279887,23 @@ bo:9224 a owl:NamedIndividual , bo:443 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9224"@en . +bo:3499 a sybio:PositivelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; + rdfs:comment "Positive"@en ; + rdfs:label "AbrB_rbsR"@en ; + sybio:NA "CTATGTAAACGGTTACATAAACAAGGAGGAGCT"^^xsd:string ; + sybio:annotatedSequence "CTATGTAAACGGTTACATAAACAAGGAGGAGCT"@en ; + sybio:begin "3701375"@en ; + sybio:boundBy bo:6849 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3701407"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2895 ; + sybio:partOf bo:27697 ; + sybio:pmid "7592460"^^xsd:string ; + sybio:regulationType "Positive"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3499"@en . + bo:22580 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "2,5-dichlorohydroquinone reductive dehalogenase; LinD - irreversible"@en ; rdfs:label "C01327 + C00530 + C00127 <=> C06601 + 2 C00051"@en , "cpd:C06601 => cpd:C06601"@en ; @@ -280041,18 +280041,18 @@ bo:21626 a owl:NamedIndividual , sybio:EC , owl:Class ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: 2-dehydro-3-deoxy-D-gluconate 6-phosphate = pyruvate + D-glyceraldehyde 3-phosphate."@en ; - rdfs:label "KDPG aldolase"@en , "phospho-2-keto-3-deoxygluconic aldolase"@en , "6-phospho-2-keto-3-deoxygluconate aldolase"@en , "GO:0008675"@en , "KDPG-aldolase"@en , "2-keto-3-deoxygluconate-6-P-aldolase"@en , "2-dehydro-3-deoxy-phosphogluconate aldolase"@en , "2-dehydro-3-deoxy-D-gluconate-6-phosphate D-glyceraldehyde-3-phosphate-lyase"@en , "phospho-2-dehydro-3-deoxygluconate aldolase"@en , "2-keto-3-deoxy-6-phosphogluconate aldolase"@en , "ODPG aldolase"@en , "2-keto-3-deoxygluconate-6-phosphate aldolase"@en , "2-keto-3-deoxy-6-phosphogluconic aldolase"@en , "phospho-2-keto-3-deoxygluconate aldolase"@en , "2-oxo-3-deoxy-6-phosphogluconate aldolase"@en ; + rdfs:label "KDPG aldolase"@en , "phospho-2-keto-3-deoxygluconic aldolase"@en , "6-phospho-2-keto-3-deoxygluconate aldolase"@en , "GO:0008675"@en , "2-keto-3-deoxygluconate-6-P-aldolase"@en , "2-dehydro-3-deoxy-phosphogluconate aldolase"@en , "KDPG-aldolase"@en , "2-dehydro-3-deoxy-D-gluconate-6-phosphate D-glyceraldehyde-3-phosphate-lyase"@en , "phospho-2-dehydro-3-deoxygluconate aldolase"@en , "2-keto-3-deoxy-6-phosphogluconate aldolase"@en , "ODPG aldolase"@en , "2-keto-3-deoxygluconate-6-phosphate aldolase"@en , "phospho-2-keto-3-deoxygluconate aldolase"@en , "2-keto-3-deoxy-6-phosphogluconic aldolase"@en , "2-oxo-3-deoxy-6-phosphogluconate aldolase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008675"^^xsd:string ; + owl:hasValue "KDPGALDOL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.14"^^xsd:string ; + owl:hasValue "GO:0008675"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "KDPGALDOL-RXN"^^xsd:string ; + owl:hasValue "4.1.2.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -280087,7 +280087,7 @@ bo:21714 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "UDP-MurNAc:L-alanine ligase"@en , "uridine 5'-diphosphate-N-acetylmuramyl-L-alanine synthetase"@en , "UDP-N-acetylmuramate-L-alanine ligase"@en , "alanine-adding enzyme"@en , "uridine diphospho-N-acetylmuramoylalanine synthetase"@en , "UDP-N-acetylmuramyl:L-alanine ligase"@en , "L-alanine-adding enzyme"@en , "UDP-acetylmuramyl-L-alanine synthetase"@en , "UDPMurNAc-L-alanine synthetase"@en , "UDP-N-acetylmuramoylalanine synthetase"@en , "uridine-diphosphate-N-acetylmuramate:L-alanine ligase"@en , "UDP-N-acetylmuramate:L-alanine ligase"@en , "uridine diphosphate N-acetylmuramate:L-alanine ligase"@en , "GO:0008763"@en , "UDP-N-acetylmuramoyl-L-alanine synthetase"@en , "MurC synthetase"@en , "L-Ala ligase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UDP-NACMUR-ALA-LIG-RXN"^^xsd:string ; + owl:hasValue "GO:0008763"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -280095,7 +280095,7 @@ bo:21714 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008763"^^xsd:string ; + owl:hasValue "UDP-NACMUR-ALA-LIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -280203,16 +280203,6 @@ bo:15503 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00301+K00302+K00303+K00304+K00305"@en ; tawny:name "15503"@en . -bo:16245 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; - rdfs:label "E5.5.1.1"@en ; - sybio:accession "0018849"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16244 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; - tawny:name "16245"@en . - bo:4592 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ydjK"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -280221,14 +280211,15 @@ bo:4592 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ydjK"@en ; tawny:name "4592"@en . -bo:16333 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "aromatic amino acid hydroxylase [EC:1.14.16.-]"@en ; - rdfs:label "E1.14.16.-"@en ; - rdfs:subClassOf sybio:KOEN ; +bo:16245 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; + rdfs:label "E5.5.1.1"@en ; + sybio:accession "0018849"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16244 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03393"@en ; - tawny:name "16333"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; + tawny:name "16245"@en . bo:4680 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yfkJIH_terminator"@en ; @@ -280242,6 +280233,15 @@ bo:4680 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4679 ; tawny:name "4680"@en . +bo:16333 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "aromatic amino acid hydroxylase [EC:1.14.16.-]"@en ; + rdfs:label "E1.14.16.-"@en ; + rdfs:subClassOf sybio:KOEN ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03393"@en ; + tawny:name "16333"@en . + bo:16421 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "novobiocin biosynthesis protein NovC"@en ; rdfs:label "NOVC"@en ; @@ -280513,27 +280513,27 @@ bo:17162 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06123"@en ; tawny:name "17162"@en . -bo:273 a owl:Class ; - rdfs:label "COG1396"@en ; - rdfs:subClassOf bo:223 , sybio:COG ; +bo:1005 a owl:Class ; + rdfs:label "COG1291"@en ; + rdfs:subClassOf bo:208 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1396"^^xsd:string ; + owl:hasValue "COG1291"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "273"@en . + tawny:name "1005"@en . -bo:1005 a owl:Class ; - rdfs:label "COG1291"@en ; - rdfs:subClassOf bo:208 , sybio:COG ; +bo:273 a owl:Class ; + rdfs:label "COG1396"@en ; + rdfs:subClassOf bo:223 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1291"^^xsd:string ; + owl:hasValue "COG1396"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1005"@en . + tawny:name "273"@en . bo:10871 a owl:NamedIndividual , bo:485 , sybio:Protein ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator yybE"@en , "putative transcriptional regulator (LysR family);BSU40670"@en ; @@ -280563,37 +280563,37 @@ bo:17250 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07412+K07413+K07418"@en ; tawny:name "17250"@en . -bo:361 a owl:Class ; - rdfs:label "COG0860"@en ; - rdfs:subClassOf bo:189 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0860"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "361"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: an alkanesulfonate + O2 + FMNH2 = an aldehyde + SO3(2-) (sulfite) + H2O + FMN."@en ; rdfs:label "FMNH2-dependent aliphatic sulfonate monooxygenase"@en , "alkanesulphonate monooxygenase"@en , "alkanesulfonate reduced-FMN:oxygen oxidoreductase"@en , "SsuD"@en , "GO:0008726"@en , "sulfate starvation-induced protein 6"@en , "alkanesulfonate monooxygenase"@en , "aliphatic sulfonate monooxygenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN0-280"^^xsd:string ; + owl:hasValue "GO:0008726"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008726"^^xsd:string ; + owl:hasValue "1.14.14.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.14.5"^^xsd:string ; + owl:hasValue "RXN0-280"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:361 a owl:Class ; + rdfs:label "COG0860"@en ; + rdfs:subClassOf bo:189 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0860"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "361"@en . + bo:23196 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "two-step reaction (see R01899+R00268) - irreversible"@en ; rdfs:label "NADP+ oxidoreductase (decarboxylating)"@en , "Isocitrate"@en , "C00311 + C00006 <=> C00026 + C00011 + C00005 + C00080"@en , "cpd:C00006 => cpd:C00006"@en ; @@ -280633,7 +280633,7 @@ bo:23284 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "ATP:4-amino-5-hydroxymethyl-2-methylpyrimidine 5-phosphotransferase"@en , "GO:0008902"@en , "hydroxymethylpyrimidine kinase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.49"^^xsd:string ; + owl:hasValue "GO:0008902"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -280641,7 +280641,7 @@ bo:23284 a sybio:EC , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008902"^^xsd:string ; + owl:hasValue "2.7.1.49"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -280751,8 +280751,6 @@ bo:4731 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yfiW,yfiX"@en ; tawny:name "4731"@en . -sybio:thirdGeneOf a owl:ObjectProperty . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid."@en ; @@ -280765,6 +280763,8 @@ sybio:thirdGeneOf a owl:ObjectProperty . sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +sybio:thirdGeneOf a owl:ObjectProperty . + a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; rdfs:comment "A DNA helicase complex that forms part of a Holliday junction resolvase complex, where the helicase activity is involved in the migration of the junction branch point. The best-characterized example is the E. coli RuvAB complex, in which a hexamer of RuvB subunits possesses helicase activity that is modulated by association with RuvA ."@en ; @@ -280863,6 +280863,18 @@ bo:5296 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "drm,punA"@en ; tawny:name "5296"@en . +bo:25968 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.3.3.9"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.3.3.9"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25968"@en . + bo:10658 a owl:NamedIndividual , sybio:Protein , bo:462 ; rdfs:comment "BSU39840;putative oxidoreductase"@en , "Uncharacterized oxidoreductase yxbG"@en ; rdfs:label "BSU39840"@en , "YxbG"@en , "yxbG"@en , "YxaU"@en ; @@ -280880,18 +280892,6 @@ bo:10658 a owl:NamedIndividual , sybio:Protein , bo:462 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10658"@en . -bo:25968 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.3.3.9"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.3.9"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25968"@en . - bo:17037 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "phosphatidylinositol 4-kinase [EC:2.7.1.67]"@en ; rdfs:label "E2.7.1.67"@en ; @@ -281186,24 +281186,6 @@ bo:11399 a sybio:Protein , bo:301 , owl:NamedIndividual ; tawny:name "11399"@en ; owl:sameAs bo:2603 . -bo:11487 a bo:665 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "UPF0603 protein ydjH"@en , "BSU06200;conserved hypothetical protein"@en ; - rdfs:label "ydjH"@en , "YdjH"@en , "BSU06200"@en ; - sybio:AA "MRGFFGKAIFVVLAVFIMMPLLGIEAVRASELQQHVYDRAHLLSKAEIGKLESLSAKLGAKRDTDFIIITTKSTNGEDIADYTGDFYDRYGKGSTAILTIDMTNREVFIAGFKKAEQYLDNSRLNSIRNTISSDLSNENYFEAFETYIQLSYKDMGIKPGVNPDNIFFTWWFQLIAAIAVGGIAVSIMLYHAGGKVTVNGSTYMDQRTSDVIDQYDTYIRTTVTRERKPSDKDSGSDGGVTKGGTSYSGSRGSF"@en ; - sybio:accession "O35004"^^xsd:string , "BSU06200"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30927 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "5.1 : From B. subtilis"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "28161.715"^^xsd:string ; - sybio:pI "5.982567"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:relatedTo bo:6864 , bo:9066 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11487"@en . - bo:30287 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26790;"@en ; rdfs:label "aadK"@en , "BSU26790"@en ; @@ -281250,6 +281232,24 @@ bo:26797 a bo:911 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26797"@en . +bo:11487 a bo:665 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "UPF0603 protein ydjH"@en , "BSU06200;conserved hypothetical protein"@en ; + rdfs:label "ydjH"@en , "YdjH"@en , "BSU06200"@en ; + sybio:AA "MRGFFGKAIFVVLAVFIMMPLLGIEAVRASELQQHVYDRAHLLSKAEIGKLESLSAKLGAKRDTDFIIITTKSTNGEDIADYTGDFYDRYGKGSTAILTIDMTNREVFIAGFKKAEQYLDNSRLNSIRNTISSDLSNENYFEAFETYIQLSYKDMGIKPGVNPDNIFFTWWFQLIAAIAVGGIAVSIMLYHAGGKVTVNGSTYMDQRTSDVIDQYDTYIRTTVTRERKPSDKDSGSDGGVTKGGTSYSGSRGSF"@en ; + sybio:accession "O35004"^^xsd:string , "BSU06200"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30927 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "5.1 : From B. subtilis"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "28161.715"^^xsd:string ; + sybio:pI "5.982567"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:relatedTo bo:6864 , bo:9066 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11487"@en . + bo:30375 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU30330;"@en ; rdfs:label "BSU30330"@en , "ytvB"@en ; @@ -281275,17 +281275,6 @@ bo:30375 a owl:NamedIndividual , sybio:CDS ; "14.0"@en ; tawny:name "30375"@en . -bo:11575 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00230"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00230"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11575"@en . - bo:26885 a bo:242 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Ribose-phosphate pyrophosphokinase;derived protein"@en , "phosphoribosylpyrophosphate synthetase;BSU00510"@en ; rdfs:label "BSU00510"@en , "prs"@en , "Prs"@en ; @@ -281306,6 +281295,17 @@ bo:26885 a bo:242 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26885"@en . +bo:11575 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00230"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00230"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11575"@en . + bo:30463 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32750"@en ; rdfs:label "BSU32750"@en , "metN"@en , "yusC"@en ; @@ -281331,17 +281331,6 @@ bo:30463 a sybio:CDS , owl:NamedIndividual ; "203.0"@en ; tawny:name "30463"@en . -bo:11663 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00562"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00562"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11663"@en . - bo:26973 a sybio:Protein , owl:NamedIndividual , bo:401 , bo:302 ; rdfs:comment "BSU19200;two-component response regulator [DesK]"@en , "Transcriptional regulatory protein desR;derived protein"@en ; rdfs:label "YocG"@en , "DesR"@en , "BSU19200"@en , "desR"@en ; @@ -281365,6 +281354,17 @@ bo:26973 a sybio:Protein , owl:NamedIndividual , bo:401 , tawny:name "26973"@en ; owl:sameAs bo:6535 . +bo:11663 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00562"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00562"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11663"@en . + bo:18042 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterinreductase [EC:1.5.99.11]"@en ; rdfs:label "HMD"@en , "E1.5.99.11"@en ; @@ -281624,16 +281624,6 @@ bo:31380 a owl:NamedIndividual , sybio:CDS ; "12.0"@en ; tawny:name "31380"@en . -bo:27890 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "odhA_RBS"@en ; - sybio:NA "AAGTTGGGGGTAATATTCAA"^^xsd:string ; - sybio:begin "2111628"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2111609"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28936 ; - tawny:name "27890"@en . - bo:12580 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C5H9NO3"@en ; rdfs:label "C5H9NO3"@en , "L-Glutamate gamma-semialdehyde"@en , "L-Glutamate 5-semialdehyde"@en ; @@ -281645,13 +281635,23 @@ bo:12580 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01165"@en ; tawny:name "12580"@en . +bo:27890 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "odhA_RBS"@en ; + sybio:NA "AAGTTGGGGGTAATATTCAA"^^xsd:string ; + sybio:begin "2111628"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2111609"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28936 ; + tawny:name "27890"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate."@en ; rdfs:label "TMPK"@en , "dTMP kinase"@en , "thymidylic acid kinase"@en , "thymidylic kinase"@en , "deoxythymidine 5'-monophosphate kinase"@en , "ATP:dTMP phosphotransferase"@en , "thymidine monophosphate kinase"@en , "thymidylate kinase"@en , "thymidylate monophosphate kinase"@en , "thymidine 5'-monophosphate kinase"@en , "GO:0004798"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DTMPKI-RXN"^^xsd:string ; + owl:hasValue "2.7.4.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -281659,7 +281659,7 @@ bo:12580 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.9"^^xsd:string ; + owl:hasValue "DTMPKI-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -281718,26 +281718,6 @@ bo:30338 a sybio:CDS , owl:NamedIndividual ; "243.0"@en ; tawny:name "30338"@en . -bo:26848 a owl:NamedIndividual , bo:1894 , sybio:Protein ; - rdfs:comment "derived protein;Histidine ammonia-lyase"@en , "BSU39350;histidine ammonia-lyase (histidase)"@en ; - rdfs:label "HutH"@en , "hutH"@en , "BSU39350"@en ; - sybio:AA "MVTLDGSSLTTADVARVLFDFEEAAASEESMERVKKSRAAVERIVRDEKTIYGINTGFGKFSDVLIQKEDSAALQLNLILSHACGVGDPFPECVSRAMLLLRANALLKGFSGVRAELIEQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALALIGQGEVFFEGERMPAMTGLKKAGIQPVTLTSKEGLALINGTQAMTAMGVVAYIEAEKLAYQTERIASLTIEGLQGIIDAFDEDIHLARGYQEQIDVAERIRFYLSDSGLTTSQGELRVQDAYSLRCIPQVHGATWQTLGYVKEKLEIEMNAATDNPLIFNDGDKVISGGNFHGQPIAFAMDFLKIAISELANIAERRIERLVNPQLNDLPPFLSPHPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIAARHAYQVIANTRRVIAIEAICALQAVEYRGIEHAASYTKQLFQEMRKVVPSIQQDRVFSYDIERLTDWLKKESLIPDHQNKELRGMNI"@en ; - sybio:accession "P10944"^^xsd:string , "BSU39350"^^xsd:string , "937541"^^xsd:string , "16080986"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32683 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "55672.525"^^xsd:string ; - sybio:pI "5.360924"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26326 , bo:26327 , bo:26328 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26848"@en . - bo:11538 a sybio:Protein , bo:875 , owl:NamedIndividual ; rdfs:comment "transcriptional regulator (LacI family);BSU35910"@en , "Ribose operon repressor"@en ; rdfs:label "BSU35910"@en , "rbsR"@en , "RbsR"@en ; @@ -281759,6 +281739,26 @@ bo:11538 a sybio:Protein , bo:875 , owl:NamedIndividual ; tawny:name "11538"@en ; owl:sameAs bo:6519 . +bo:26848 a owl:NamedIndividual , bo:1894 , sybio:Protein ; + rdfs:comment "derived protein;Histidine ammonia-lyase"@en , "BSU39350;histidine ammonia-lyase (histidase)"@en ; + rdfs:label "HutH"@en , "hutH"@en , "BSU39350"@en ; + sybio:AA "MVTLDGSSLTTADVARVLFDFEEAAASEESMERVKKSRAAVERIVRDEKTIYGINTGFGKFSDVLIQKEDSAALQLNLILSHACGVGDPFPECVSRAMLLLRANALLKGFSGVRAELIEQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALALIGQGEVFFEGERMPAMTGLKKAGIQPVTLTSKEGLALINGTQAMTAMGVVAYIEAEKLAYQTERIASLTIEGLQGIIDAFDEDIHLARGYQEQIDVAERIRFYLSDSGLTTSQGELRVQDAYSLRCIPQVHGATWQTLGYVKEKLEIEMNAATDNPLIFNDGDKVISGGNFHGQPIAFAMDFLKIAISELANIAERRIERLVNPQLNDLPPFLSPHPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIAARHAYQVIANTRRVIAIEAICALQAVEYRGIEHAASYTKQLFQEMRKVVPSIQQDRVFSYDIERLTDWLKKESLIPDHQNKELRGMNI"@en ; + sybio:accession "P10944"^^xsd:string , "BSU39350"^^xsd:string , "937541"^^xsd:string , "16080986"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32683 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "55672.525"^^xsd:string ; + sybio:pI "5.360924"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26326 , bo:26327 , bo:26328 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26848"@en . + bo:6264 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yycOPQ_terminator"@en ; sybio:NA "ATGAAGAGACTGGTGTGAAGTCTCTTTTTTTGTTGAACC"^^xsd:string ; @@ -282283,15 +282283,15 @@ bo:19010 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "uridine phosphokinase"@en , "pyrimidine ribonucleoside kinase"@en , "uridine monophosphokinase"@en , "ATP:uridine 5'-phosphotransferase"@en , "uridine kinase reaction"@en , "GO:0004849"@en , "uridine-cytidine kinase"@en , "uridine kinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "URIDINEKIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.48"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.48"^^xsd:string ; + owl:hasValue "GO:0004849"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004849"^^xsd:string ; + owl:hasValue "URIDINEKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -283310,11 +283310,11 @@ bo:29298 a sybio:CDS , owl:NamedIndividual ; rdfs:label "glycerol-1-phosphate dehydrogenase [NAD(P)+]"@en , "2-oxidoreductase"@en , "GO:0050492"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.261-RXN"^^xsd:string ; + owl:hasValue "GO:0050492"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050492"^^xsd:string ; + owl:hasValue "1.1.1.261-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -283794,11 +283794,11 @@ bo:17854 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PHON"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003993"^^xsd:string ; + owl:hasValue "COG0671"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0671"^^xsd:string ; + owl:hasValue "0003993"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -284449,11 +284449,11 @@ bo:30979 a owl:NamedIndividual , sybio:CDS ; rdfs:label "phosphofructokinase"@en , "GO:0008443"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008443"^^xsd:string ; + owl:hasValue "2.7.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.-"^^xsd:string ; + owl:hasValue "GO:0008443"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -284507,19 +284507,19 @@ bo:18646 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "FK"@en , "riboflavin kinase"@en , "GO:0008531"@en , "riboflavine kinase"@en , "ATP:riboflavin 5'-phosphotransferase"@en , "flavokinase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "24927 \"riboflavin kinase activity\""^^xsd:string ; + owl:hasValue "2.7.1.26"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008531"^^xsd:string ; + owl:hasValue "RIBOFLAVINKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.26"^^xsd:string ; + owl:hasValue "24927 \"riboflavin kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBOFLAVINKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0008531"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -284736,18 +284736,6 @@ bo:22311 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11605 ; tawny:name "22311"@en . - - a owl:Class , owl:NamedIndividual , sybio:CellularComponent ; - rdfs:comment "A DNA polymerase complex that contains two complexes of the catalytic alpha, beta, delta and epsilon polymerase/exonuclease subunits, plus the DnaX complex, a heptamer that includes the tau and gamma products of the dnaX gene and confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands."@en ; - rdfs:label "GO:0009360"@en , "DNA polymerase III complex"@en ; - rdfs:subClassOf sybio:CellularComponent ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009360"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:19475 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "2.3.3.1"@en ; @@ -284760,6 +284748,18 @@ bo:19475 a owl:NamedIndividual , sybio:EC , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19475"@en . + + a owl:Class , owl:NamedIndividual , sybio:CellularComponent ; + rdfs:comment "A DNA polymerase complex that contains two complexes of the catalytic alpha, beta, delta and epsilon polymerase/exonuclease subunits, plus the DnaX complex, a heptamer that includes the tau and gamma products of the dnaX gene and confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands."@en ; + rdfs:label "GO:0009360"@en , "DNA polymerase III complex"@en ; + rdfs:subClassOf sybio:CellularComponent ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0009360"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:3318 a owl:NamedIndividual , sybio:SigHPromoter , sybio:Promoter ; rdfs:label "yoxA"@en ; sybio:NA "TATTTGATAGGGGAAAATATAAAATGGAGGAAATATGGTACAGTA"^^xsd:string ; @@ -284847,6 +284847,17 @@ bo:10199 a sybio:Protein , owl:NamedIndividual , bo:639 ; sybio:taxId "224308"@en ; tawny:name "10199"@en . +bo:25597 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C00590 + C00006 <=> C02666 + C00005 + C00080"@en , "cpd:C02666 <=> cpd:C02666"@en , "coniferyl alcohol"@en , "NADP+ oxidoreductase"@en ; + sybio:accession "RN:R02593"^^xsd:string ; + sybio:catalyzedBy bo:19207 ; + sybio:catalyzingClass bo:25598 , bo:25466 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25597"@en . + bo:10287 a sybio:Protein , bo:707 , owl:NamedIndividual ; rdfs:comment "putative diacylglycerol kinase;BSU24000"@en , "Putative lipid kinase bmrU"@en ; rdfs:label "bmrU"@en , "BSU24000"@en , "BmrU"@en ; @@ -284865,17 +284876,6 @@ bo:10287 a sybio:Protein , bo:707 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10287"@en . -bo:25597 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C00590 + C00006 <=> C02666 + C00005 + C00080"@en , "cpd:C02666 <=> cpd:C02666"@en , "coniferyl alcohol"@en , "NADP+ oxidoreductase"@en ; - sybio:accession "RN:R02593"^^xsd:string ; - sybio:catalyzedBy bo:19207 ; - sybio:catalyzingClass bo:25598 , bo:25466 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25597"@en . - bo:16012 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "ornithine decarboxylase [EC:4.1.1.17]"@en ; rdfs:label "ODC1"@en , "SPEC"@en , "SPEF"@en , "E4.1.1.17"@en ; @@ -284893,6 +284893,18 @@ bo:16012 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01581"@en ; tawny:name "16012"@en . +bo:25685 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.10.1.1"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.10.1.1"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25685"@en . + bo:10375 a bo:385 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative acetyltransferase;BSU28330;"@en , "Uncharacterized N-acetyltransferase ysnE"@en ; rdfs:label "ysnE"@en , "YsnE"@en , "BSU28330"@en ; @@ -284910,18 +284922,6 @@ bo:10375 a bo:385 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10375"@en . -bo:25685 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.10.1.1"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.10.1.1"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25685"@en . - bo:16100 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]"@en ; rdfs:label "HPAI"@en ; @@ -284932,6 +284932,17 @@ bo:16100 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K02510"@en ; tawny:name "16100"@en . +bo:25773 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "FUT3 - reversible"@en ; + rdfs:label "G10615 + G00037 <=> G10620 + G00046"@en , "gl:G00046 <=> gl:G00046"@en ; + sybio:accession "RN:R06155"^^xsd:string ; + sybio:catalyzedBy bo:18751 ; + sybio:catalyzingClass bo:25762 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25773"@en . + bo:10463 a owl:NamedIndividual , sybio:Protein , bo:1691 ; rdfs:comment "Uncharacterized membrane protein yuiD"@en , "putative integral inner membrane protein;BSU32060"@en ; rdfs:label "BSU32060"@en , "YuiD"@en , "yuiD"@en ; @@ -284949,16 +284960,16 @@ bo:10463 a owl:NamedIndividual , sybio:Protein , bo:1691 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10463"@en . -bo:25773 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "FUT3 - reversible"@en ; - rdfs:label "G10615 + G00037 <=> G10620 + G00046"@en , "gl:G00046 <=> gl:G00046"@en ; - sybio:accession "RN:R06155"^^xsd:string ; - sybio:catalyzedBy bo:18751 ; - sybio:catalyzingClass bo:25762 ; +bo:25861 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "Ref.1: J Biol Chem 1995 Mar 17;270(11):6403-411 - reversible"@en ; + rdfs:label "cpd:C06760 <=> cpd:C06760"@en , "2-Hydroxy-5-methyl-cis,cis-muconic-semialdehyde formylhydrolase"@en , "C06760 + C00001 <=> C00058 + C11354"@en ; + sybio:accession "RN:R05865"^^xsd:string ; + sybio:catalyzedBy bo:16222 ; + sybio:catalyzingClass bo:22632 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25773"@en . + tawny:name "25861"@en . bo:10551 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU36090"@en , "Uncharacterized protein ywrE"@en ; @@ -284977,17 +284988,6 @@ bo:10551 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10551"@en . -bo:25861 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "Ref.1: J Biol Chem 1995 Mar 17;270(11):6403-411 - reversible"@en ; - rdfs:label "cpd:C06760 <=> cpd:C06760"@en , "2-Hydroxy-5-methyl-cis,cis-muconic-semialdehyde formylhydrolase"@en , "C06760 + C00001 <=> C00058 + C11354"@en ; - sybio:accession "RN:R05865"^^xsd:string ; - sybio:catalyzedBy bo:16222 ; - sybio:catalyzingClass bo:22632 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25861"@en . - bo:6868 a sybio:Protein , bo:588 , owl:NamedIndividual ; rdfs:comment "component of the piezosome (stressosome);BSU13200;"@en ; rdfs:label "RsbRB"@en , "YkoB"@en , "IspU"@en , "BSU13200"@en ; @@ -285214,23 +285214,6 @@ bo:11292 a sybio:Protein , owl:NamedIndividual , bo:340 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11292"@en . -bo:11380 a owl:NamedIndividual , sybio:Protein , bo:531 ; - rdfs:comment "Uncharacterized protein ycnI"@en , "BSU03940;conserved hypothetical protein"@en ; - rdfs:label "YcnI"@en , "BSU03940"@en , "ycnI"@en ; - sybio:AA "LLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYTMKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQEGQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTDEHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA"@en ; - sybio:accession "P94431"^^xsd:string , "BSU03940"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29281 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "22093.945"^^xsd:string ; - sybio:pI "5.015495"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:relatedTo bo:11381 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11380"@en . - bo:30180 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU24910"@en ; rdfs:label "BSU24910"@en , "yqgM"@en ; @@ -285274,6 +285257,23 @@ bo:26690 a bo:1502 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26690"@en . +bo:11380 a owl:NamedIndividual , sybio:Protein , bo:531 ; + rdfs:comment "Uncharacterized protein ycnI"@en , "BSU03940;conserved hypothetical protein"@en ; + rdfs:label "YcnI"@en , "BSU03940"@en , "ycnI"@en ; + sybio:AA "LLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYTMKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQEGQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTDEHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA"@en ; + sybio:accession "P94431"^^xsd:string , "BSU03940"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29281 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "22093.945"^^xsd:string ; + sybio:pI "5.015495"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:relatedTo bo:11381 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11380"@en . + bo:31859 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU39020"@en ; rdfs:label "yxjA"@en , "BSU39020"@en , "nupG"@en ; @@ -285377,11 +285377,11 @@ bo:19614 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "IPMDH"@en , "threo-Ds-3-isopropylmalate dehydrogenase"@en , "beta-isopropylmalate dehydrogenase"@en , "beta-isopropylmalic enzyme"@en , "IMDH"@en , "oxidoreductase"@en , "3-carboxy-2-hydroxy-4-methylpentanoate:NAD+ oxidoreductase"@en , "beta-IPM dehydrogenase"@en , "GO:0003862"@en , "3-isopropylmalate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003862"^^xsd:string ; + owl:hasValue "1.1.1.85"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.85"^^xsd:string ; + owl:hasValue "GO:0003862"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -285751,26 +285751,6 @@ bo:11079 a bo:565 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11079"@en . -bo:11167 a owl:NamedIndividual , sybio:Protein , bo:403 ; - rdfs:comment "Sensor histidine kinase yxjM"@en , "two-component sensor histidine kinase [YxjL];BSU38900"@en ; - rdfs:label "BSU38900"@en , "YxjM"@en , "yxjM"@en ; - sybio:AA "MNGQTPARHYYKKLVPSLILILNCIQFLSHPTKADPILLAFVFAVYLAFIWIIPYVASTAVSLSIFIGLWLLTDFFWAVSGQEQGAAYFLIVFLMIYAAFRLPSRLSLIFTACLIGGNILLLSSQGGSLNTIISNISIMLGLYVLFSSMRFRREARREAERNHAELAKMHVQLEHAHKELQKAHAELQEASVLSLRYAVLEERTRIARDIHDSIGHELTSVIVQLQSLPYILKSSKEDSEKVIQNVLSVARECLQEVRSVVHQMGRSESMVGLTALRGLIHQVEERSGLHVSLDTAGLSEESWPPNVSETIYRILQEALTNIIRHADASHAAAVISNDKSHLYVTITDDGQFTGSLTYGFGLTGMKERAEKAGGSLTFSAVQPSGLKIELSLPLMTTNKEQKDEQR"@en ; - sybio:accession "BSU38900"^^xsd:string , "P55183"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30650 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "1.3 : Sensors (signal transduction)"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "45233.555"^^xsd:string ; - sybio:pI "6.781837"^^xsd:string ; - sybio:productType "rc : receptor"^^xsd:string ; - sybio:relatedTo bo:9062 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11167"@en . - bo:26477 a bo:403 , sybio:Protein , bo:571 , bo:209 , owl:NamedIndividual ; rdfs:comment "Sensor histidine kinase resE;;derived protein"@en , "two-component sensor histidine kinase;BSU23110"@en ; rdfs:label "BSU23110"@en , "ResE"@en , "YpxE"@en , "resE"@en ; @@ -285793,6 +285773,26 @@ bo:26477 a bo:403 , sybio:Protein , bo:571 , bo:209 , owl: tawny:name "26477"@en ; owl:sameAs bo:6730 . +bo:11167 a owl:NamedIndividual , sybio:Protein , bo:403 ; + rdfs:comment "Sensor histidine kinase yxjM"@en , "two-component sensor histidine kinase [YxjL];BSU38900"@en ; + rdfs:label "BSU38900"@en , "YxjM"@en , "yxjM"@en ; + sybio:AA "MNGQTPARHYYKKLVPSLILILNCIQFLSHPTKADPILLAFVFAVYLAFIWIIPYVASTAVSLSIFIGLWLLTDFFWAVSGQEQGAAYFLIVFLMIYAAFRLPSRLSLIFTACLIGGNILLLSSQGGSLNTIISNISIMLGLYVLFSSMRFRREARREAERNHAELAKMHVQLEHAHKELQKAHAELQEASVLSLRYAVLEERTRIARDIHDSIGHELTSVIVQLQSLPYILKSSKEDSEKVIQNVLSVARECLQEVRSVVHQMGRSESMVGLTALRGLIHQVEERSGLHVSLDTAGLSEESWPPNVSETIYRILQEALTNIIRHADASHAAAVISNDKSHLYVTITDDGQFTGSLTYGFGLTGMKERAEKAGGSLTFSAVQPSGLKIELSLPLMTTNKEQKDEQR"@en ; + sybio:accession "BSU38900"^^xsd:string , "P55183"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30650 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "1.3 : Sensors (signal transduction)"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "45233.555"^^xsd:string ; + sybio:pI "6.781837"^^xsd:string ; + sybio:productType "rc : receptor"^^xsd:string ; + sybio:relatedTo bo:9062 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11167"@en . + bo:30055 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21240"@en ; rdfs:label "yomS"@en , "BSU21240"@en ; @@ -285818,26 +285818,6 @@ bo:30055 a owl:NamedIndividual , sybio:CDS ; "0.0"@en ; tawny:name "30055"@en . -bo:11255 a bo:279 , bo:280 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Uncharacterized protein yacH"@en , "BSU00840;activator of protein kinase McsB"@en ; - rdfs:label "McsA"@en , "YacH"@en , "yacH"@en , "BSU00840"@en ; - sybio:AA "LICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISANQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFENAAHVRDQIRLLEQSLKSTDSEEEQE"@en ; - sybio:accession "BSU00840"^^xsd:string , "P37569"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30898 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "4.1 : Adaptation to atypical conditions"^^xsd:string ; - sybio:interactsWith bo:9098 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "21003.91"^^xsd:string ; - sybio:pI "6.635933"^^xsd:string ; - sybio:productType "f : factor"^^xsd:string ; - sybio:relatedTo bo:11257 , bo:11256 , bo:9559 , bo:11128 , bo:9536 , bo:9760 , bo:9644 , bo:11399 , bo:9558 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11255"@en . - bo:26565 a sybio:Protein , bo:1234 , owl:NamedIndividual ; rdfs:comment "3-isopropylmalate dehydratase large subunit;derived protein"@en , "3-isopropylmalate dehydratase (large subunit);BSU28260"@en ; rdfs:label "LeuC"@en , "leuC"@en , "BSU28260"@en ; @@ -285858,6 +285838,26 @@ bo:26565 a sybio:Protein , bo:1234 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26565"@en . +bo:11255 a bo:279 , bo:280 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Uncharacterized protein yacH"@en , "BSU00840;activator of protein kinase McsB"@en ; + rdfs:label "McsA"@en , "YacH"@en , "yacH"@en , "BSU00840"@en ; + sybio:AA "LICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISANQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFENAAHVRDQIRLLEQSLKSTDSEEEQE"@en ; + sybio:accession "BSU00840"^^xsd:string , "P37569"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30898 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "4.1 : Adaptation to atypical conditions"^^xsd:string ; + sybio:interactsWith bo:9098 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "21003.91"^^xsd:string ; + sybio:pI "6.635933"^^xsd:string ; + sybio:productType "f : factor"^^xsd:string ; + sybio:relatedTo bo:11257 , bo:11256 , bo:9559 , bo:11128 , bo:9536 , bo:9760 , bo:9644 , bo:11399 , bo:9558 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11255"@en . + bo:30143 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU23060;"@en ; rdfs:label "ypzE"@en , "BSU23060"@en ; @@ -286175,15 +286175,15 @@ bo:13939 a sybio:Compound , owl:NamedIndividual ; rdfs:label "adenosylmethionine synthetase"@en , "S-adenosylmethionine synthetase"@en , "methionine adenosyltransferase"@en , "methionine S-adenosyltransferase"@en , "S-adenosylmethionine synthase"@en , "ATP:L-methionine S-adenosyltransferase"@en , "methionine-activating enzyme"@en , "S-adenosyl-L-methionine synthetase"@en , "GO:0004478"@en , "AdoMet synthetase"@en , "ATP-methionine adenosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004478"^^xsd:string ; + owl:hasValue "S-ADENMETSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11567 \"methionine adenosyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0004478"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "S-ADENMETSYN-RXN"^^xsd:string ; + owl:hasValue "11567 \"methionine adenosyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -286251,15 +286251,15 @@ bo:32915 a sybio:CDS , owl:NamedIndividual ; rdfs:label "polynucleotide phosphorylase"@en , "GO:0004654"@en , "polyribonucleotide:phosphate nucleotidyltransferase"@en , "nucleoside diphosphate:polynucleotidyl transferase"@en , "polyribonucleotide phosphorylase"@en , "polyribonucleotide nucleotidyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004654"^^xsd:string ; + owl:hasValue "2.7.7.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.8-RXN"^^xsd:string ; + owl:hasValue "GO:0004654"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.8"^^xsd:string ; + owl:hasValue "2.7.7.8-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -286268,10 +286268,10 @@ bo:32915 a sybio:CDS , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide."@en ; - rdfs:label "dihydrolipoyl acetyltransferase"@en , "lipoic acid acetyltransferase"@en , "dihydrolipoic transacetylase"@en , "thioltransacetylase A"@en , "lipoate acetyltransferase"@en , "GO:0004742"@en , "enzyme-dihydrolipoyllysine:acetyl-CoA S-acetyltransferase"@en , "transacetylase X"@en , "dihydrolipoyllysine-residue acetyltransferase"@en , "lipoic transacetylase"@en , "dihydrolipoamide S-acetyltransferase"@en , "lipoic acetyltransferase"@en , "acetyl-CoA: S-acetyltransferase"@en , "dihydrolipoate acetyltransferase"@en , "lipoylacetyltransferase"@en , "lipoate transacetylase"@en , "acetyl-CoA:dihydrolipoamide S-acetyltransferase"@en ; + rdfs:label "lipoic acid acetyltransferase"@en , "dihydrolipoyl acetyltransferase"@en , "dihydrolipoic transacetylase"@en , "thioltransacetylase A"@en , "lipoate acetyltransferase"@en , "GO:0004742"@en , "enzyme-dihydrolipoyllysine:acetyl-CoA S-acetyltransferase"@en , "transacetylase X"@en , "dihydrolipoyllysine-residue acetyltransferase"@en , "lipoic transacetylase"@en , "dihydrolipoamide S-acetyltransferase"@en , "lipoic acetyltransferase"@en , "acetyl-CoA: S-acetyltransferase"@en , "dihydrolipoate acetyltransferase"@en , "lipoylacetyltransferase"@en , "lipoate transacetylase"@en , "acetyl-CoA:dihydrolipoamide S-acetyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.12"^^xsd:string ; + owl:hasValue "GO:0004742"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -286279,7 +286279,7 @@ bo:32915 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004742"^^xsd:string ; + owl:hasValue "2.3.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -286320,7 +286320,7 @@ bo:30018 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15130 \"tryptophan-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004830"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -286328,7 +286328,7 @@ bo:30018 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004830"^^xsd:string ; + owl:hasValue "15130 \"tryptophan-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -286552,11 +286552,11 @@ bo:14944 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.4.1.22"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004461"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0004461"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -286737,15 +286737,15 @@ bo:21984 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:label "3-phosphoglycerate dehydrogenase"@en , "3PHP reductase"@en , "glycerate 3-phosphate dehydrogenase"@en , "GO:0004617"@en , "alphaKG reductase"@en , "alpha-phosphoglycerate dehydrogenase"@en , "3-phospho-D-glycerate:NAD+ 2-oxidoreductase"@en , "D-3-phosphoglycerate:NAD+ oxidoreductase"@en , "phosphoglycerate dehydrogenase"@en , "D- and L-HGA"@en , "3-phosphoglyceric acid dehydrogenase"@en , "alpha-KG reductase"@en , "phosphoglyceric acid dehydrogenase"@en , "glycerate-1 3-phosphate dehydrogenase"@en , "D-3-phosphoglycerate dehydrogenase"@en , "phosphoglycerate oxidoreductase"@en , "SerA 3PG dehydrogenase"@en , "3-phosphoglycerate:NAD+ 2-oxidoreductase"@en , "SerA"@en , "PGDH"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PGLYCDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "1.1.1.95"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.95"^^xsd:string ; + owl:hasValue "GO:0004617"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004617"^^xsd:string ; + owl:hasValue "PGLYCDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -286766,11 +286766,11 @@ bo:15685 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E5.4.99.2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1884"^^xsd:string ; + owl:hasValue "COG1703"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1703"^^xsd:string ; + owl:hasValue "COG1884"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -286852,11 +286852,11 @@ bo:28274 a sybio:RBS , owl:NamedIndividual ; rdfs:label "GO:0042128"@en , "assimilatory nitrate reduction"@en , "nitrate assimilation"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-381"^^xsd:string ; + owl:hasValue "GO:0042128"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042128"^^xsd:string ; + owl:hasValue "PWY-381"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -287108,6 +287108,17 @@ bo:21859 a owl:NamedIndividual , sybio:Reaction ; sybio:sharesIntermediate bo:21921 , bo:11592 , bo:11588 , bo:21874 ; tawny:name "21859"@en . +bo:1275 a owl:Class ; + rdfs:label "COG1182"@en ; + rdfs:subClassOf bo:233 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1182"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1275"@en . + bo:7000 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU22300;"@en ; rdfs:label "BSU22300"@en , "JopC"@en , "YppC"@en ; @@ -287124,17 +287135,6 @@ bo:7000 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "7000"@en . -bo:1275 a owl:Class ; - rdfs:label "COG1182"@en ; - rdfs:subClassOf bo:233 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1182"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1275"@en . - bo:21947 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.4.1.16"@en ; @@ -287200,83 +287200,83 @@ bo:1451 a owl:Class ; rdfs:label "TCA cycle"@en , "Krebs cycle"@en , "GO:0006099"@en , "tricarboxylic acid cycle"@en , "citric acid cycle"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006099"^^xsd:string ; + owl:hasValue "552177 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469619 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "TCA"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448489 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "517303 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TCA"^^xsd:string ; + owl:hasValue "542155 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592472 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "GO:0006099"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602459 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "P42-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526188 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "602459 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598139 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "507289 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Tricarboxylic_acid_cycle"^^xsd:string ; + owl:hasValue "568313 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542155 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "448489 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568313 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "599596 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536451 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "71403 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507289 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "Tricarboxylic_acid_cycle"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487338 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "531078 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517303 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "597334 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P42-PWY"^^xsd:string ; + owl:hasValue "487338 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600653 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "547513 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557691 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "600653 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595333 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "557691 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547513 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "592472 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -287284,31 +287284,31 @@ bo:1451 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599596 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "585940 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552177 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "595333 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531078 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "536451 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "71403 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "P105-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597334 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "469619 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P105-PWY"^^xsd:string ; + owl:hasValue "598139 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585940 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; + owl:hasValue "526188 \"Citric acid cycle (TCA cycle)\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -287401,6 +287401,16 @@ bo:28149 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31487 ; tawny:name "28149"@en . +bo:28237 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "ytkL_RBS"@en ; + sybio:NA "CATGTGACGAGGTGAAAGAA"^^xsd:string ; + sybio:begin "3010618"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3010599"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31965 ; + tawny:name "28237"@en . + bo:16654 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]"@en ; rdfs:label "E3.5.2.9"@en ; @@ -287414,16 +287424,6 @@ bo:16654 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01469"@en ; tawny:name "16654"@en . -bo:28237 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "ytkL_RBS"@en ; - sybio:NA "CATGTGACGAGGTGAAAGAA"^^xsd:string ; - sybio:begin "3010618"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3010599"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31965 ; - tawny:name "28237"@en . - bo:16742 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "4-alpha-glucanotransferase [EC:2.4.1.25]"@en ; rdfs:label "MALQ"@en , "E2.4.1.25"@en ; @@ -287646,11 +287646,11 @@ bo:17395 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E3.1.2.6"@en , "GLOB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0491"^^xsd:string ; + owl:hasValue "0004416"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004416"^^xsd:string ; + owl:hasValue "COG0491"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -287669,27 +287669,6 @@ bo:1238 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1238"@en . -bo:594 a owl:Class ; - rdfs:label "COG4974"@en ; - rdfs:subClassOf bo:170 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4974"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "594"@en . - -bo:17483 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "hydrogen dehydrogenase [EC:1.12.1.2]"@en ; - rdfs:label "E1.12.1.2"@en ; - sybio:accession "0047985"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17484 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00436"@en ; - tawny:name "17483"@en . - bo:29066 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU19960"@en ; sybio:accession "BSU19960"^^xsd:string ; @@ -287705,21 +287684,31 @@ bo:29066 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "29066"@en . +bo:17483 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "hydrogen dehydrogenase [EC:1.12.1.2]"@en ; + rdfs:label "E1.12.1.2"@en ; + sybio:accession "0047985"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17484 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00436"@en ; + tawny:name "17483"@en . + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + phosphate = CoA + acetyl phosphate."@en ; rdfs:label "acetyl-CoA:phosphate acetyltransferase"@en , "phosphate acetyltransferase"@en , "GO:0008959"@en , "PTA"@en , "phosphotransacetylase"@en , "phosphoacylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSACETYLTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0008959"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008959"^^xsd:string ; + owl:hasValue "2.3.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.8"^^xsd:string ; + owl:hasValue "PHOSACETYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -287736,6 +287725,17 @@ bo:1326 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1326"@en . +bo:594 a owl:Class ; + rdfs:label "COG4974"@en ; + rdfs:subClassOf bo:170 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG4974"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "594"@en . + bo:17571 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "acetate CoA-transferase alpha subunit [EC:2.8.3.8]"@en ; rdfs:label "ATOD"@en ; @@ -287746,17 +287746,6 @@ bo:17571 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035"@en ; tawny:name "17571"@en . -bo:682 a owl:Class ; - rdfs:label "COG0047"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0047"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "682"@en . - bo:29154 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU00220;"@en ; rdfs:label "yaaL"@en , "BSU00220"@en ; @@ -287793,6 +287782,17 @@ bo:1414 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1414"@en . +bo:682 a owl:Class ; + rdfs:label "COG0047"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0047"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "682"@en . + bo:29242 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU02210"@en ; rdfs:label "ybfH"@en , "BSU02210"@en ; @@ -287930,11 +287930,11 @@ bo:16529 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "translational elongation"@en , "translation elongation"@en , "GO:0006414"@en , "protein synthesis elongation"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599775 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "156842 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592594 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "585833 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -287942,103 +287942,93 @@ bo:16529 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581687 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "507576 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557878 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "568476 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507576 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "469915 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526416 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "581687 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "156842 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "599775 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487621 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "542334 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517549 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "552259 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469915 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "557878 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568476 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "598179 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598179 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "448799 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448799 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "531239 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542334 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "592594 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531239 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "GO:0006455"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597399 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "517549 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585833 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "536610 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547675 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "GO:0006414"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006455"^^xsd:string ; + owl:hasValue "547675 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536610 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "597399 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595405 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "487621 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552259 \"Eukaryotic Translation Elongation\""^^xsd:string ; + owl:hasValue "595405 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006414"^^xsd:string ; + owl:hasValue "526416 \"Eukaryotic Translation Elongation\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:partOf . -bo:16617 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "3-cyanoalanine hydratase [EC:4.2.1.65]"@en ; - rdfs:label "E4.2.1.65"@en ; - sybio:accession "0047558"^^xsd:string , "Q5QGZ8"^^xsd:string , "Q3LRV4"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16616 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13036"@en ; - tawny:name "16617"@en . - bo:4964 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "clpE_terminator"@en ; sybio:NA "AATCAGCGGTTTCCTTTTAGGAAGCCGCTTTTTTTTATACTTT"^^xsd:string ; @@ -288051,13 +288041,23 @@ bo:4964 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4963 ; tawny:name "4964"@en . +bo:16617 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "3-cyanoalanine hydratase [EC:4.2.1.65]"@en ; + rdfs:label "E4.2.1.65"@en ; + sybio:accession "0047558"^^xsd:string , "Q5QGZ8"^^xsd:string , "Q3LRV4"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16616 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13036"@en ; + tawny:name "16617"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the endohydrolysis of 1,5-alpha-arabinofuranosidic linkages in 1,5-arabinans."@en ; rdfs:label "endo-1 5-a-L-arabinanase"@en , "endo-1 5-alpha-L-arabinanase"@en , "endo-arabanase"@en , "arabinan endo-1,5-alpha-L-arabinosidase"@en , "GO:0046558"@en , "1 5-alpha-L-arabinan 1 5-alpha-L-arabinanohydrolase"@en , "endo-alpha-1 5-arabanase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.99"^^xsd:string ; + owl:hasValue "3.2.1.99-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -288065,7 +288065,7 @@ bo:4964 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.99-RXN"^^xsd:string ; + owl:hasValue "3.2.1.99"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -288076,11 +288076,11 @@ bo:16705 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.4.1.13"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT4"^^xsd:string ; + owl:hasValue "0016157"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016157"^^xsd:string ; + owl:hasValue "GT4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -288228,11 +288228,11 @@ bo:20106 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "cell adhesion"@en , "GO:0007155"@en , "cell adhesion molecule"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cell_adhesion"^^xsd:string ; + owl:hasValue "GO:0007155"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007155"^^xsd:string ; + owl:hasValue "Cell_adhesion"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -288332,6 +288332,14 @@ bo:557 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "557"@en . +bo:5881 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "lytR"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28806 ; + sybio:operonGenes "lytR"@en ; + tawny:name "5881"@en . + bo:17534 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphoglycolate phosphatase [EC:3.1.3.18]"@en ; rdfs:label "E3.1.3.18"@en , "GPH"@en ; @@ -288342,14 +288350,6 @@ bo:17534 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01091"@en ; tawny:name "17534"@en . -bo:5881 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "lytR"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28806 ; - sybio:operonGenes "lytR"@en ; - tawny:name "5881"@en . - bo:29117 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU23290"@en ; sybio:accession "BSU23290"^^xsd:string ; @@ -288802,7 +288802,7 @@ bo:24397 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11700 ; tawny:name "24397"@en . -bo:24485 a sybio:EC , owl:Class , owl:NamedIndividual ; +bo:24485 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.3.1.101"@en ; rdfs:subClassOf sybio:EC ; @@ -288850,11 +288850,11 @@ bo:5668 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0016879"@en , "ligase activity, forming carbon-nitrogen bonds"@en , "other carbon-nitrogen ligase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.-.-"^^xsd:string ; + owl:hasValue "GO:0016879"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016879"^^xsd:string ; + owl:hasValue "6.3.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -289019,6 +289019,16 @@ bo:10092 a sybio:Protein , bo:634 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10092"@en . +bo:25490 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "C00376 + C00007 + C00001 <=> C00777 + C00027"@en , "Retinal"@en , "cpd:C00376 <=> cpd:C00376"@en , "oxygen oxidoreductase"@en ; + sybio:accession "RN:R02125"^^xsd:string ; + sybio:catalyzingClass bo:25491 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25490"@en . + bo:10180 a bo:211 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized membrane protein yobI"@en , "putative NTPase with transmembrane helices;BSU18970"@en ; rdfs:label "YobI"@en , "BSU18970"@en , "yobI"@en ; @@ -289036,16 +289046,6 @@ bo:10180 a bo:211 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10180"@en . -bo:25490 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "C00376 + C00007 + C00001 <=> C00777 + C00027"@en , "Retinal"@en , "cpd:C00376 <=> cpd:C00376"@en , "oxygen oxidoreductase"@en ; - sybio:accession "RN:R02125"^^xsd:string ; - sybio:catalyzingClass bo:25491 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25490"@en . - bo:6497 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "bceAB_terminator"@en ; sybio:NA "AACATGTCATAAGCGTGTGACGAAAATGTCACATGCTTTTCTTTTTTGTTC"^^xsd:string ; @@ -289617,6 +289617,18 @@ bo:25277 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25277"@en . +bo:25365 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "5.3.3.5"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "5.3.3.5"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25365"@en . + bo:10055 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU07550;heat stress induced protein"@en , "General stress protein 17M"@en ; rdfs:label "yflT"@en , "YflT"@en , "BSU07550"@en ; @@ -289633,18 +289645,6 @@ bo:10055 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10055"@en . -bo:25365 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "5.3.3.5"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.3.5"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25365"@en . - bo:25453 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "orphan"@en ; rdfs:label "pyruvate"@en , "NADP+ 2-oxidoreductase (CoA-acetylating)"@en , " => "@en , "C00022 + C00010 + C00006 <=> C00024 + C00011 + C00005 + C00080"@en ; @@ -289880,23 +289880,6 @@ bo:7289 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "1423"@en ; tawny:name "7289"@en . -bo:11060 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "putative membrane protein;BSU35180"@en , "Protein csbA"@en ; - rdfs:label "CsbA"@en , "csbA"@en , "BSU35180"@en ; - sybio:AA "LITKAVFALFFPFMLVVLFTRVTFNHYVAIALTAALLFASYLKGYTETYFIVGLDVVSLVAGGLYMAKKAAEKKEE"@en ; - sybio:accession "BSU35180"^^xsd:string , "P37953"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32097 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "4.6 : Miscellaneous"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "8445.805"^^xsd:string ; - sybio:pI "9.021355"^^xsd:string ; - sybio:productType "pm : putative membrane component"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11060"@en . - bo:26370 a sybio:Protein , owl:NamedIndividual , bo:433 ; rdfs:comment "dihydrodipicolinate synthase;BSU16770"@en , "Dihydrodipicolinate synthase;derived protein"@en ; rdfs:label "DapA"@en , "BSU16770"@en , "dapA"@en ; @@ -289917,6 +289900,23 @@ bo:26370 a sybio:Protein , owl:NamedIndividual , bo:433 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26370"@en . +bo:11060 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "putative membrane protein;BSU35180"@en , "Protein csbA"@en ; + rdfs:label "CsbA"@en , "csbA"@en , "BSU35180"@en ; + sybio:AA "LITKAVFALFFPFMLVVLFTRVTFNHYVAIALTAALLFASYLKGYTETYFIVGLDVVSLVAGGLYMAKKAAEKKEE"@en ; + sybio:accession "BSU35180"^^xsd:string , "P37953"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32097 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "4.6 : Miscellaneous"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "8445.805"^^xsd:string ; + sybio:pI "9.021355"^^xsd:string ; + sybio:productType "pm : putative membrane component"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11060"@en . + bo:7377 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "12 kDa DNA-binding protein/L24 ribosomal protein homolog"@en ; rdfs:label "Q9R511"@en ; @@ -290178,6 +290178,17 @@ bo:32368 a sybio:CDS , owl:NamedIndividual ; "31.0"@en ; tawny:name "32368"@en . +bo:13568 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C3H4Cl2"@en ; + rdfs:label "trans-1,3-Dichloropropene"@en , "C3H4Cl2"@en , "trans-3-Chloroallyl chloride"@en ; + sybio:accession "8835"^^xsd:string , "18624"^^xsd:string , "B00996"^^xsd:string , "C06609"^^xsd:string , "10061-02-6"^^xsd:string ; + sybio:consumedBy bo:24306 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24306 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06609"@en ; + tawny:name "13568"@en . + bo:28878 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU10420;"@en ; rdfs:label "comK"@en , "BSU10420"@en ; @@ -290210,17 +290221,6 @@ bo:28878 a owl:NamedIndividual , sybio:CDS ; "32.0"@en ; tawny:name "28878"@en . -bo:13568 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C3H4Cl2"@en ; - rdfs:label "trans-1,3-Dichloropropene"@en , "C3H4Cl2"@en , "trans-3-Chloroallyl chloride"@en ; - sybio:accession "8835"^^xsd:string , "18624"^^xsd:string , "B00996"^^xsd:string , "C06609"^^xsd:string , "10061-02-6"^^xsd:string ; - sybio:consumedBy bo:24306 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24306 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C06609"@en ; - tawny:name "13568"@en . - bo:32456 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU12260"@en ; rdfs:label "BSU12260"@en , "yjlA"@en ; @@ -290810,6 +290810,17 @@ bo:32419 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu24050"@en ; tawny:name "32419"@en . +bo:13619 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C35H44N4O16"@en ; + rdfs:label "Formylmethanofuran"@en , "C35H44N4O16"@en ; + sybio:accession "4247"^^xsd:string , "B04753"^^xsd:string , "16314"^^xsd:string , "C01001"^^xsd:string ; + sybio:consumedBy bo:24484 , bo:24456 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24484 , bo:24747 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01001"@en ; + tawny:name "13619"@en . + bo:28929 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU38130"@en ; rdfs:label "ywcE"@en , "BSU38130"@en , "ipa-41r"@en ; @@ -290837,28 +290848,17 @@ bo:28929 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "28929"@en . -bo:13619 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C35H44N4O16"@en ; - rdfs:label "Formylmethanofuran"@en , "C35H44N4O16"@en ; - sybio:accession "4247"^^xsd:string , "B04753"^^xsd:string , "16314"^^xsd:string , "C01001"^^xsd:string ; - sybio:consumedBy bo:24484 , bo:24456 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24484 , bo:24747 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01001"@en ; - tawny:name "13619"@en . - a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: (S)-dihydroorotate + O2 = orotate + H2O2."@en ; rdfs:label "4 5-L-dihydroorotate:oxygen oxidoreductase"@en , "dihydroorotate oxidase"@en , "GO:0004158"@en , "oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.3.1"^^xsd:string ; + owl:hasValue "GO:0004158"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004158"^^xsd:string ; + owl:hasValue "1.3.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -290940,10 +290940,10 @@ bo:2796 a owl:NamedIndividual , sybio:Promoter , sybio:Co a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate or GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate."@en ; - rdfs:label "Transphosphoribosidase"@en , "inosinic pyrophosphorylase"@en , "IMP-GMP pyrophosphorylase"@en , "guanosine 5'-phosphate pyrophosphorylase"@en , "guanine-hypoxanthine phosphoribosyltransferase"@en , "purine-6-thiol phosphoribosyltransferase"@en , "inosinate pyrophosphorylase"@en , "GPRT"@en , "IMP:diphosphate phospho-D-ribosyltransferase"@en , "hypoxanthine-guanine phosphoribosyltransferase"@en , "HPRT"@en , "guanosine phosphoribosyltransferase"@en , "GMP pyrophosphorylase"@en , "hypoxanthine phosphoribosyltransferase"@en , "HGPRTase"@en , "IMP pyrophosphorylase"@en , "6-hydroxypurine phosphoribosyltransferase"@en , "inosine 5'-phosphate pyrophosphorylase"@en , "guanylate pyrophosphorylase"@en , "inosinic acid pyrophosphorylase"@en , "GO:0004422"@en , "guanylic pyrophosphorylase"@en , "guanine phosphoribosyltransferase"@en , "IMP diphosphorylase"@en , "6-mercaptopurine phosphoribosyltransferase"@en ; + rdfs:label "Transphosphoribosidase"@en , "inosinic pyrophosphorylase"@en , "IMP-GMP pyrophosphorylase"@en , "guanosine 5'-phosphate pyrophosphorylase"@en , "guanine-hypoxanthine phosphoribosyltransferase"@en , "inosinate pyrophosphorylase"@en , "GPRT"@en , "IMP:diphosphate phospho-D-ribosyltransferase"@en , "hypoxanthine-guanine phosphoribosyltransferase"@en , "purine-6-thiol phosphoribosyltransferase"@en , "HPRT"@en , "guanosine phosphoribosyltransferase"@en , "GMP pyrophosphorylase"@en , "hypoxanthine phosphoribosyltransferase"@en , "HGPRTase"@en , "IMP pyrophosphorylase"@en , "6-hydroxypurine phosphoribosyltransferase"@en , "inosine 5'-phosphate pyrophosphorylase"@en , "guanylate pyrophosphorylase"@en , "inosinic acid pyrophosphorylase"@en , "GO:0004422"@en , "guanylic pyrophosphorylase"@en , "guanine phosphoribosyltransferase"@en , "IMP diphosphorylase"@en , "6-mercaptopurine phosphoribosyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HYPOXANPRIBOSYLTRAN-RXN"^^xsd:string ; + owl:hasValue "2.4.2.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -290951,7 +290951,7 @@ bo:2796 a owl:NamedIndividual , sybio:Promoter , sybio:Co owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.8"^^xsd:string ; + owl:hasValue "HYPOXANPRIBOSYLTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -291306,6 +291306,12 @@ bo:27125 a sybio:FFL , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; tawny:name "27125"@en . +bo:27213 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "sigA_codY_acsA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27213"@en . + bo:21488 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "(S)-dihydroorotate amidohydrolase"@en , "C00337 + C00001 <=> C00438"@en , "cpd:C00337 <=> cpd:C00337"@en ; @@ -291318,23 +291324,17 @@ bo:21488 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:21444 ; tawny:name "21488"@en . -bo:27213 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "sigA_codY_acsA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27213"@en . - a owl:Class ; rdfs:comment "The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells."@en ; rdfs:label "GO:0030261"@en , "chromosome condensation"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030261"^^xsd:string ; + owl:hasValue "GO:0000068"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000068"^^xsd:string ; + owl:hasValue "GO:0030261"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -291504,15 +291504,27 @@ bo:15541 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00499"@en ; tawny:name "15541"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways involving a mannan backbone composed of D-mannose unites, substituted with D-glucose and/or D-galactose units."@en ; + rdfs:label "substituted mannan metabolism"@en , "substituted mannan metabolic process"@en , "GO:0006080"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006080"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:16195 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E1.1.-.-"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1979"^^xsd:string ; + owl:hasValue "COG2141"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2141"^^xsd:string ; + owl:hasValue "COG1979"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -291520,18 +291532,6 @@ bo:16195 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00120"@en ; tawny:name "16195"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways involving a mannan backbone composed of D-mannose unites, substituted with D-glucose and/or D-galactose units."@en ; - rdfs:label "substituted mannan metabolism"@en , "substituted mannan metabolic process"@en , "GO:0006080"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006080"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:16283 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]"@en ; rdfs:label "LIGK"@en , "E4.1.3.17"@en ; @@ -291912,7 +291912,7 @@ bo:18967 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "nitrite:acceptor oxidoreductase"@en , "nitrate reductase"@en , "oxidoreductase"@en , "GO:0008940"@en , "respiratory nitrate reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.7.99.4"^^xsd:string ; + owl:hasValue "GO:0008940"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -291920,7 +291920,7 @@ bo:18967 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008940"^^xsd:string ; + owl:hasValue "1.7.99.4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -291955,7 +291955,7 @@ bo:15416 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "AhpC"@en , "PRDX"@en , "thiol-containing-reductant:hydroperoxide oxidoreductase"@en , "peroxiredoxin"@en , "GO:0051920"@en , "Prx"@en , "alkyl hydroperoxide reductase C22"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.15"^^xsd:string ; + owl:hasValue "1.11.1.15-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -291963,7 +291963,7 @@ bo:15416 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.15-RXN"^^xsd:string ; + owl:hasValue "1.11.1.15"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -291985,7 +291985,7 @@ bo:15504 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "UMPK"@en , "UMP kinase"@en , "SmbA"@en , "PyrH"@en , "ATP:UMP phosphotransferase"@en , "GO:0033862"@en , "uridine monophosphate kinase"@en , "UMP-kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.22"^^xsd:string ; + owl:hasValue "GO:0033862"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -291993,25 +291993,12 @@ bo:15504 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0033862"^^xsd:string ; + owl:hasValue "2.7.4.22"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16246 a sybio:KOEN , owl:Class , owl:NamedIndividual ; - rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; - rdfs:label "E5.5.1.1"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018849"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; - tawny:name "16246"@en . - bo:4593 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ydjK_terminator"@en ; sybio:NA "AAGAATCCGCACCCGAGTGCGGATTCTTTTTGGTTTCA"^^xsd:string ; @@ -292024,14 +292011,18 @@ bo:4593 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4592 ; tawny:name "4593"@en . -bo:16334 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; - rdfs:label "YUCCA"@en ; +bo:16246 a sybio:KOEN , owl:Class , owl:NamedIndividual ; + rdfs:comment "muconate cycloisomerase [EC:5.5.1.1]"@en ; + rdfs:label "E5.5.1.1"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0018849"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16335 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; - tawny:name "16334"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01856"@en ; + tawny:name "16246"@en . bo:4681 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yfkF"@en ; @@ -292041,6 +292032,15 @@ bo:4681 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yfkF"@en ; tawny:name "4681"@en . +bo:16334 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; + rdfs:label "YUCCA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16335 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; + tawny:name "16334"@en . + bo:16422 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "novobiocin biosynthesis protein NovC"@en ; rdfs:label "NOVC"@en ; @@ -292320,27 +292320,27 @@ bo:17163 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06123"@en ; tawny:name "17163"@en . -bo:274 a owl:Class ; - rdfs:label "COG0042"@en ; - rdfs:subClassOf bo:194 , sybio:COG ; +bo:1006 a owl:Class ; + rdfs:label "COG0811"@en ; + rdfs:subClassOf bo:304 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0042"^^xsd:string ; + owl:hasValue "COG0811"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "274"@en . + tawny:name "1006"@en . -bo:1006 a owl:Class ; - rdfs:label "COG0811"@en ; - rdfs:subClassOf bo:304 , sybio:COG ; +bo:274 a owl:Class ; + rdfs:label "COG0042"@en ; + rdfs:subClassOf bo:194 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0811"^^xsd:string ; + owl:hasValue "COG0042"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1006"@en . + tawny:name "274"@en . bo:10872 a sybio:Protein , bo:409 , owl:NamedIndividual ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator yybA;"@en , "putative transcriptional regulator (MarR family);BSU40710;"@en ; @@ -292422,17 +292422,6 @@ bo:450 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "450"@en . -bo:23285 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "alpha,alpha-trehalose glucohydrolase"@en , "cpd:C01083 => cpd:C01083"@en , "C01083 + C00001 <=> 2 C00031"@en ; - sybio:accession "RN:R00010"^^xsd:string ; - sybio:catalyzedBy bo:16771 ; - sybio:catalyzingClass bo:23286 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11648 ; - tawny:name "23285"@en . - bo:29010 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32490"@en , "xanthine dehydrogenase, FAD-binding subunit (EC:1.17.1.4)"@en ; rdfs:label "BSU32490"@en , "yurD"@en , "pucC"@en ; @@ -292460,6 +292449,17 @@ bo:29010 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu32490"@en ; tawny:name "29010"@en . +bo:23285 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "alpha,alpha-trehalose glucohydrolase"@en , "cpd:C01083 => cpd:C01083"@en , "C01083 + C00001 <=> 2 C00031"@en ; + sybio:accession "RN:R00010"^^xsd:string ; + sybio:catalyzedBy bo:16771 ; + sybio:catalyzingClass bo:23286 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11648 ; + tawny:name "23285"@en . + bo:23373 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "D-glucosamine-6-phosphate N-acetyltransferase"@en , "C00024 + C00352 <=> C00010 + C00357"@en , "cpd:C00352 => cpd:C00352"@en , "acetyl-CoA"@en ; @@ -292501,43 +292501,43 @@ bo:4468 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "glucose metabolism"@en , "glucose metabolic process"@en , "GO:0006006"@en , "cellular glucose metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568310 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "600549 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487335 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "536448 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595290 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "507286 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547510 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "602408 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592406 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "70326 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602408 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "592406 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585744 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "469616 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531075 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "547510 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536448 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "542152 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581512 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "526185 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -292545,47 +292545,47 @@ bo:4468 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557701 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "448486 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448486 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "585744 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542152 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "581512 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598075 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "552108 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526185 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "595290 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517300 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "597266 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507286 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "531075 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597266 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "517300 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70326 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "487335 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552108 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "568310 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600549 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "598075 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -292593,7 +292593,7 @@ bo:4468 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469616 \"Glucose metabolism\""^^xsd:string ; + owl:hasValue "557701 \"Glucose metabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -292653,11 +292653,11 @@ bo:4820 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.4"^^xsd:string ; + owl:hasValue "GO:0000721"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000721"^^xsd:string ; + owl:hasValue "1.1.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -292899,11 +292899,11 @@ bo:10835 a sybio:Protein , owl:NamedIndividual , bo:875 ; rdfs:label "oxidoreductase activity, acting on peroxide as acceptor"@en , "GO:0016684"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.-.-"^^xsd:string ; + owl:hasValue "GO:0016684"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016684"^^xsd:string ; + owl:hasValue "1.11.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -292966,11 +292966,11 @@ bo:10923 a owl:NamedIndividual , bo:906 , sybio:Protein ; rdfs:label "GO:0016772"@en , "transferase activity, transferring phosphorus-containing groups"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.-.-"^^xsd:string ; + owl:hasValue "GO:0016772"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016772"^^xsd:string ; + owl:hasValue "2.7.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -293088,23 +293088,6 @@ bo:4607 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4606 ; tawny:name "4607"@en . -bo:11488 a sybio:Protein , owl:NamedIndividual , bo:634 ; - rdfs:comment "Uncharacterized protein yizA"@en , "conserved hypothetical protein;BSU10800"@en ; - rdfs:label "YizA"@en , "yizA"@en , "BSU10800"@en ; - sybio:AA "VMKFFEYNWQVRDQWFTWCHQLTTEELLKNRLGGVENILYTLFHIIDVEYSWIRAIQGKEDIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELVSVPWETGVLYTRDEILHHIIAHEIHHIGQLSVWARELKLSPVSASFIGRTLKPIHSY"@en ; - sybio:accession "Q7WY73"^^xsd:string , "BSU10800"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29379 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "18778.76"^^xsd:string ; - sybio:pI "5.965477"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:relatedTo bo:6867 , bo:9426 , bo:9139 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11488"@en . - bo:30288 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26800;"@en ; rdfs:label "yrpB"@en , "BSU26800"@en ; @@ -293150,6 +293133,23 @@ bo:26798 a bo:1833 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26798"@en . +bo:11488 a sybio:Protein , owl:NamedIndividual , bo:634 ; + rdfs:comment "Uncharacterized protein yizA"@en , "conserved hypothetical protein;BSU10800"@en ; + rdfs:label "YizA"@en , "yizA"@en , "BSU10800"@en ; + sybio:AA "VMKFFEYNWQVRDQWFTWCHQLTTEELLKNRLGGVENILYTLFHIIDVEYSWIRAIQGKEDIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELVSVPWETGVLYTRDEILHHIIAHEIHHIGQLSVWARELKLSPVSASFIGRTLKPIHSY"@en ; + sybio:accession "Q7WY73"^^xsd:string , "BSU10800"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29379 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "18778.76"^^xsd:string ; + sybio:pI "5.965477"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:relatedTo bo:6867 , bo:9426 , bo:9139 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11488"@en . + bo:30376 a sybio:CDS , sybio:KinaseEncodingCDS , owl:NamedIndividual ; rdfs:comment "BSU30340"@en ; rdfs:label "BSU30340"@en , "ytvA"@en ; @@ -293175,21 +293175,6 @@ bo:30376 a sybio:CDS , sybio:KinaseEncodingCDS , owl:NamedInd "14.0"@en ; tawny:name "30376"@en . -bo:11576 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00232.png"@en ; - rdfs:label "Caffeine metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00232"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11577 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00232"@en ; - tawny:name "11576"@en . - bo:26886 a bo:262 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU00680;hypoxanthine-guanine phosphoribosyltransferase"@en , "Hypoxanthine-guanine phosphoribosyltransferase;derived protein"@en ; rdfs:label "HprT"@en , "hprT"@en , "BSU00680"@en ; @@ -293210,6 +293195,21 @@ bo:26886 a bo:262 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26886"@en . +bo:11576 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00232.png"@en ; + rdfs:label "Caffeine metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00232"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:derivesFrom bo:11577 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00232"@en ; + tawny:name "11576"@en . + bo:30464 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32760;"@en ; rdfs:label "BSU32760"@en , "yusD"@en ; @@ -293235,22 +293235,6 @@ bo:30464 a sybio:CDS , owl:NamedIndividual ; "7.0"@en ; tawny:name "30464"@en . -bo:11664 a owl:Class , sybio:Pathway , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00564.png"@en ; - rdfs:label "Glycerophospholipid metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00564"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11660 , bo:11584 ; - sybio:derivesFrom bo:11665 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00564"@en ; - tawny:name "11664"@en . - bo:26974 a sybio:Protein , owl:NamedIndividual , bo:949 ; rdfs:comment "D-mannonate dehydratase;BSU12340"@en , "derived protein;Mannonate dehydratase"@en ; rdfs:label "uxuA"@en , "UxuA"@en , "YjmE"@en , "BSU12340"@en ; @@ -293270,6 +293254,22 @@ bo:26974 a sybio:Protein , owl:NamedIndividual , bo:949 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26974"@en . +bo:11664 a owl:Class , sybio:Pathway , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00564.png"@en ; + rdfs:label "Glycerophospholipid metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00564"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11660 , bo:11584 ; + sybio:derivesFrom bo:11665 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00564"@en ; + tawny:name "11664"@en . + bo:18043 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterinreductase [EC:1.5.99.11]"@en ; rdfs:label "HMD"@en , "E1.5.99.11"@en ; @@ -293473,11 +293473,11 @@ bo:5612 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0016823"@en , "hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016823"^^xsd:string ; + owl:hasValue "3.7.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.7.1.-"^^xsd:string ; + owl:hasValue "GO:0016823"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -293583,15 +293583,15 @@ bo:12581 a owl:NamedIndividual , sybio:Compound ; rdfs:label "methylenetetrahydrofolate:dUMP C-methyltransferase"@en , "thymidylate synthetase"@en , "5 10-methylenetetrahydrofolate:dUMP C-methyltransferase"@en , "dTMP synthase"@en , "thymidylate synthase"@en , "GO:0004799"@en , "TMP synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14376 \"thymidylate synthase activity\""^^xsd:string ; + owl:hasValue "2.1.1.45"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004799"^^xsd:string ; + owl:hasValue "14376 \"thymidylate synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.45"^^xsd:string ; + owl:hasValue "GO:0004799"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -293672,25 +293672,6 @@ bo:30339 a sybio:CDS , owl:NamedIndividual ; "261.0"@en ; tawny:name "30339"@en . -bo:26849 a bo:1896 , owl:NamedIndividual , bo:1360 , sybio:Protein ; - rdfs:comment "pyrimidine-nucleoside phosphorylase;BSU39400"@en , "derived protein;Pyrimidine-nucleoside phosphorylase"@en ; - rdfs:label "pdp"@en , "BSU39400"@en , "Pdp"@en ; - sybio:AA "MRMVDIIIKKQNGKELTTEEIQFFVNGYTDGSIPDYQASALAMAIFFQDMSDRERADLTMAMVNSGETIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAALDVPVAKMSGRGLGHTGGTIDKLEAIMGFHVELTKDEFIKLVNRDKVAVIGQSGNLTPADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAAELAKAMVRIGNNVGRQTMAVISDMSQPLGFAIGNALEVKEAIDTLKGEGPEDLHELVLTLGSQMVVLAKKADTLDEARAKLEEVMKNGKALEKFKDFLKNQGGDSSIVDDPSKLPQAAYQIDVPAKEAGVVSEIVADEIGVAAMLLGAGRATKEDEIDLAVGIMLRKKVGDKVEKGEPLVTLYANRENVDEVIAKVYDNIRIAAEAKAPKLIHTLITE"@en ; - sybio:accession "P39142"^^xsd:string , "50812307"^^xsd:string , "937540"^^xsd:string , "BSU39400"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32593 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "46205.25"^^xsd:string ; - sybio:pI "4.954506"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26850 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26849"@en . - bo:11539 a sybio:Protein , bo:718 , owl:NamedIndividual ; rdfs:comment "Putative ABC transporter substrate-binding protein yesO"@en , "BSU06970;pectin degradation byproducts-binding lipoprotein"@en ; rdfs:label "YesO"@en , "BSU06970"@en , "yesO"@en ; @@ -293710,6 +293691,25 @@ bo:11539 a sybio:Protein , bo:718 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11539"@en . +bo:26849 a bo:1896 , owl:NamedIndividual , bo:1360 , sybio:Protein ; + rdfs:comment "pyrimidine-nucleoside phosphorylase;BSU39400"@en , "derived protein;Pyrimidine-nucleoside phosphorylase"@en ; + rdfs:label "pdp"@en , "BSU39400"@en , "Pdp"@en ; + sybio:AA "MRMVDIIIKKQNGKELTTEEIQFFVNGYTDGSIPDYQASALAMAIFFQDMSDRERADLTMAMVNSGETIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAALDVPVAKMSGRGLGHTGGTIDKLEAIMGFHVELTKDEFIKLVNRDKVAVIGQSGNLTPADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAAELAKAMVRIGNNVGRQTMAVISDMSQPLGFAIGNALEVKEAIDTLKGEGPEDLHELVLTLGSQMVVLAKKADTLDEARAKLEEVMKNGKALEKFKDFLKNQGGDSSIVDDPSKLPQAAYQIDVPAKEAGVVSEIVADEIGVAAMLLGAGRATKEDEIDLAVGIMLRKKVGDKVEKGEPLVTLYANRENVDEVIAKVYDNIRIAAEAKAPKLIHTLITE"@en ; + sybio:accession "P39142"^^xsd:string , "50812307"^^xsd:string , "937540"^^xsd:string , "BSU39400"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32593 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "46205.25"^^xsd:string ; + sybio:pI "4.954506"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26850 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26849"@en . + bo:6265 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yycN"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -294767,22 +294767,22 @@ bo:15969 a sybio:KOPR , owl:NamedIndividual ; a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups."@en ; - rdfs:label "polyamine biosynthetic process"@en , "polyamine anabolism"@en , "polyamine formation"@en , "polyamine synthesis"@en , "GO:0006596"@en , "polyamine biosynthesis"@en ; + rdfs:label "polyamine biosynthetic process"@en , "polyamine anabolism"@en , "polyamine formation"@en , "polyamine synthesis"@en , "polyamine biosynthesis"@en , "GO:0006596"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470322 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "547955 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006596"^^xsd:string ; + owl:hasValue "568777 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487999 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "449201 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542638 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "508048 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -294790,51 +294790,51 @@ bo:15969 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592888 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "351200 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517901 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "592888 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449201 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "GO:0006596"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508048 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "581980 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568777 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "517901 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602617 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "531499 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547955 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "487999 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536890 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "470322 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "351200 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "536890 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526727 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "542638 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531499 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "602617 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581980 \"Interconversion of polyamines\""^^xsd:string ; + owl:hasValue "526727 \"Interconversion of polyamines\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -294849,16 +294849,6 @@ bo:16799 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12451"@en ; tawny:name "16799"@en . -bo:16887 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "streptomycin 6-kinase [EC:2.7.1.72]"@en ; - rdfs:label "STRA"@en ; - sybio:accession "0050300"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16886 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12570"@en ; - tawny:name "16887"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver."@en ; @@ -294875,6 +294865,16 @@ bo:16887 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16887 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "streptomycin 6-kinase [EC:2.7.1.72]"@en ; + rdfs:label "STRA"@en ; + sybio:accession "0050300"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16886 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12570"@en ; + tawny:name "16887"@en . + bo:32048 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU06400;"@en ; rdfs:label "yebF"@en , "yebE"@en , "BSU06400"@en ; @@ -294905,11 +294905,11 @@ bo:16975 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "DAK2"@en , "DAK1"@en , "E2.7.1.29"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004371"^^xsd:string ; + owl:hasValue "COG2376"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2376"^^xsd:string ; + owl:hasValue "0004371"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -295173,6 +295173,17 @@ bo:32400 a owl:NamedIndividual , sybio:CDS ; "318.0"@en ; tawny:name "32400"@en . +bo:13600 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C5H9NO4"@en ; + rdfs:label "L-threo-3-Methylaspartate"@en , "C5H9NO4"@en ; + sybio:accession "6402"^^xsd:string , "C03618"^^xsd:string , "47980"^^xsd:string , "B01676"^^xsd:string ; + sybio:consumedBy bo:24403 , bo:24392 , bo:24402 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24392 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03618"@en ; + tawny:name "13600"@en . + bo:28910 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU38400;"@en ; rdfs:label "BSU38400"@en , "epr"@en , "ipa-15r"@en ; @@ -295202,17 +295213,6 @@ bo:28910 a sybio:CDS , owl:NamedIndividual ; "149.0"@en ; tawny:name "28910"@en . -bo:13600 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C5H9NO4"@en ; - rdfs:label "L-threo-3-Methylaspartate"@en , "C5H9NO4"@en ; - sybio:accession "6402"^^xsd:string , "C03618"^^xsd:string , "47980"^^xsd:string , "B01676"^^xsd:string ; - sybio:consumedBy bo:24403 , bo:24392 , bo:24402 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24392 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03618"@en ; - tawny:name "13600"@en . - bo:9917 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yfhL"@en , "SdpC immunity factor;BSU08580;"@en ; rdfs:label "BSU08580"@en , "yfhL"@en , "YfhL"@en ; @@ -295450,11 +295450,11 @@ bo:17980 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E2.1.1.86B"@en , "MTRB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4062"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4062"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -295632,7 +295632,7 @@ bo:2388 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004014"^^xsd:string ; + owl:hasValue "7049 \"adenosylmethionine decarboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -295640,7 +295640,7 @@ bo:2388 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7049 \"adenosylmethionine decarboxylase activity\""^^xsd:string ; + owl:hasValue "GO:0004014"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -295785,11 +295785,11 @@ bo:17767 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "CDHC"@en , "E1.2.99.2B"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1614"^^xsd:string ; + owl:hasValue "0018492"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018492"^^xsd:string ; + owl:hasValue "COG1614"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -296476,14 +296476,14 @@ bo:18559 a sybio:KOEN , owl:Class , owl:NamedIndividual ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: CDP-diacylglycerol + glycerol 3-phosphate = CMP + 3-(3-phosphatidyl)-glycerol 1-phosphate."@en ; - rdfs:label "sn-glycerol-3-phosphate phosphatidyltransferase"@en , "3-phosphatidyl-1'-glycerol-3'-phosphate synthase"@en , "phosphatidylglycerol phosphate synthase"@en , "cytidine 5'-diphospho-1 2-diacyl-sn-glycerol phosphatidyltransferase"@en , "glycerol phosphate phosphatidyltransferase"@en , "GO:0008444"@en , "phosphatidylglycerophosphate synthetase"@en , "CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "glycerol 3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "phosphatidylglycerolphosphate synthase"@en , "phosphatidylglycerophosphate synthase"@en , "PGP synthase"@en , "CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "phosphatidylglycerol phosphate synthetase"@en , "glycerophosphate phosphatidyltransferase"@en ; + rdfs:label "sn-glycerol-3-phosphate phosphatidyltransferase"@en , "3-phosphatidyl-1'-glycerol-3'-phosphate synthase"@en , "phosphatidylglycerol phosphate synthase"@en , "cytidine 5'-diphospho-1 2-diacyl-sn-glycerol phosphatidyltransferase"@en , "glycerol phosphate phosphatidyltransferase"@en , "GO:0008444"@en , "phosphatidylglycerophosphate synthetase"@en , "CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "glycerol 3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase"@en , "CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "phosphatidylglycerolphosphate synthase"@en , "phosphatidylglycerophosphate synthase"@en , "phosphatidylglycerol phosphate synthetase"@en , "PGP synthase"@en , "CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase"@en , "glycerophosphate phosphatidyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.5"^^xsd:string ; + owl:hasValue "GO:0008444"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008444"^^xsd:string ; + owl:hasValue "2.7.8.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -296675,11 +296675,11 @@ bo:22048 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "GO:0009097"@en , "isoleucine formation"@en , "isoleucine synthesis"@en , "isoleucine biosynthesis"@en , "isoleucine anabolism"@en , "isoleucine biosynthetic process"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ILEUSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0009097"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009097"^^xsd:string ; + owl:hasValue "ILEUSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -296871,23 +296871,6 @@ bo:19652 a sybio:Enzyme , owl:NamedIndividual ; tawny:name "19652"@en ; owl:sameAs bo:26346 . -bo:10288 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU24200;putative lipoprotein;"@en , "Uncharacterized lipoprotein yqiH"@en ; - rdfs:label "YqiH"@en , "YzpA"@en , "BSU24200"@en , "yqiH"@en ; - sybio:AA "VKQTVLLLFTALFLSGCSVASADDSVPRFTEEGKYIGSADPHTIAVSLNGEETMIQVPKDKRDECESLPDQTHVLVKYTKKDNGTLQLEDIQLRKNS"@en ; - sybio:accession "P40770"^^xsd:string , "BSU24200"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30160 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "10723.71"^^xsd:string ; - sybio:pI "5.037071"^^xsd:string ; - sybio:productType "lp : lipoprotein"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10288"@en . - bo:19740 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "proJ"@en ; @@ -296911,6 +296894,23 @@ bo:25598 a sybio:EC , owl:Class , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25598"@en . +bo:10288 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU24200;putative lipoprotein;"@en , "Uncharacterized lipoprotein yqiH"@en ; + rdfs:label "YqiH"@en , "YzpA"@en , "BSU24200"@en , "yqiH"@en ; + sybio:AA "VKQTVLLLFTALFLSGCSVASADDSVPRFTEEGKYIGSADPHTIAVSLNGEETMIQVPKDKRDECESLPDQTHVLVKYTKKDNGTLQLEDIQLRKNS"@en ; + sybio:accession "P40770"^^xsd:string , "BSU24200"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30160 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "10723.71"^^xsd:string ; + sybio:pI "5.037071"^^xsd:string ; + sybio:productType "lp : lipoprotein"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10288"@en . + bo:16013 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "diamine oxidase [EC:1.4.3.22]"@en ; rdfs:label "AOC1"@en , "ABP1"@en ; @@ -296921,6 +296921,17 @@ bo:16013 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11182"@en ; tawny:name "16013"@en . +bo:25686 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G10694 <=> gl:G10694"@en , "G10614 + G10694 <=> G10620 + G01813"@en ; + sybio:accession "RN:R08599"^^xsd:string ; + sybio:catalyzedBy bo:18958 ; + sybio:catalyzingClass bo:25687 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25686"@en . + bo:10376 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "putative stress response protein;BSU28340"@en , "Stress response protein ysnF;"@en ; rdfs:label "ysnF"@en , "YsnF"@en , "BSU28340"@en ; @@ -296938,17 +296949,6 @@ bo:10376 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10376"@en . -bo:25686 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G10694 <=> gl:G10694"@en , "G10614 + G10694 <=> G10620 + G01813"@en ; - sybio:accession "RN:R08599"^^xsd:string ; - sybio:catalyzedBy bo:18958 ; - sybio:catalyzingClass bo:25687 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25686"@en . - bo:16101 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]"@en ; rdfs:label "HPAI"@en ; @@ -296959,6 +296959,16 @@ bo:16101 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K02510"@en ; tawny:name "16101"@en . +bo:25774 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "2-hydroxy-phenylacetate hydroxylase - reversible"@en ; + rdfs:label "cpd:C07086 <=> cpd:C07086"@en , "C05852 + C00007 + C00004 + C00080 <=> C00544 + C00003 + C00001"@en ; + sybio:accession "RN:R05450"^^xsd:string ; + sybio:catalyzingClass bo:21056 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25774"@en . + bo:10464 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yuzG"@en , "hypothetical protein;BSU32120"@en ; rdfs:label "BSU32120"@en , "YuzG"@en , "yuzG"@en ; @@ -296976,16 +296986,6 @@ bo:10464 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10464"@en . -bo:25774 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "2-hydroxy-phenylacetate hydroxylase - reversible"@en ; - rdfs:label "cpd:C07086 <=> cpd:C07086"@en , "C05852 + C00007 + C00004 + C00080 <=> C00544 + C00003 + C00001"@en ; - sybio:accession "RN:R05450"^^xsd:string ; - sybio:catalyzingClass bo:21056 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25774"@en . - bo:5190 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ypqP"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -296994,6 +296994,17 @@ bo:5190 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ypqP"@en ; tawny:name "5190"@en . +bo:25862 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C11354 + C00001 <=> C06762"@en , "4-Hydroxy-2-oxohexanoate hydro-lyase"@en , "cpd:C11354 <=> cpd:C11354"@en ; + sybio:accession "RN:R05864"^^xsd:string ; + sybio:catalyzedBy bo:16180 ; + sybio:catalyzingClass bo:22478 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25862"@en . + bo:10552 a owl:NamedIndividual , bo:808 , sybio:Protein ; rdfs:comment "Putative NAD(P)H-dependent FMN-containing oxidoreductase ywqN"@en , "BSU36150;putative oxidoreductase"@en ; rdfs:label "YwqN"@en , "ywqN"@en , "BSU36150"@en ; @@ -297012,17 +297023,6 @@ bo:10552 a owl:NamedIndividual , bo:808 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10552"@en . -bo:25862 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C11354 + C00001 <=> C06762"@en , "4-Hydroxy-2-oxohexanoate hydro-lyase"@en , "cpd:C11354 <=> cpd:C11354"@en ; - sybio:accession "RN:R05864"^^xsd:string ; - sybio:catalyzedBy bo:16180 ; - sybio:catalyzingClass bo:22478 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25862"@en . - bo:6869 a owl:NamedIndividual , sybio:Protein , bo:943 ; rdfs:comment "BSU12170;conserved hypothetical protein"@en ; rdfs:label "BSU12170"@en , "YjgD"@en ; @@ -297131,6 +297131,18 @@ bo:4148 a sybio:NegativelyRegulatedOperator , sybio:Opera sybio:upstreamOf bo:29031 ; tawny:name "4148"@en . + + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; + rdfs:comment "Interacting selectively and non-covalently with transfer RNA."@en ; + rdfs:label "GO:0000049"@en , "tRNA binding"@en ; + rdfs:subClassOf , sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0000049"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:4236 a sybio:NegativelyRegulatedOperator , sybio:Operator , owl:NamedIndividual ; rdfs:comment "Negative"@en ; rdfs:label "YrzC_yxeK"@en ; @@ -297145,18 +297157,6 @@ bo:4236 a sybio:NegativelyRegulatedOperator , sybio:Opera sybio:sigmaFactor "SigA"^^xsd:string ; tawny:name "4236"@en . - - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; - rdfs:comment "Interacting selectively and non-covalently with transfer RNA."@en ; - rdfs:label "GO:0000049"@en , "tRNA binding"@en ; - rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000049"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:24908 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C06416 => cpd:C06416"@en , "C06320 + C00033 + C00021 <=> C06416 + C00019 + C00001"@en ; @@ -297218,19 +297218,19 @@ bo:4412 a sybio:Operon , owl:NamedIndividual ; rdfs:label "iron-chelate-transporting ATPase"@en , "ATP phosphohydrolase"@en , "iron-chelate ABC transporter"@en , "ferric ferric-dicitrate porter"@en , "GO:0015623"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015623"^^xsd:string ; + owl:hasValue "GO:0015409"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.34"^^xsd:string ; + owl:hasValue "3.6.3.34-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.34-RXN"^^xsd:string ; + owl:hasValue "3.6.3.34"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015409"^^xsd:string ; + owl:hasValue "GO:0015623"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -297273,6 +297273,18 @@ bo:30093 a owl:NamedIndividual , sybio:CDS ; "275.0"@en ; tawny:name "30093"@en . + + a owl:Class ; + rdfs:comment "The directed movement of organic anions into, out of, within or between cells by means of some external agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage."@en ; + rdfs:label "organic anion transport"@en , "GO:0015711"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0015711"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:11293 a bo:341 , sybio:Protein , bo:342 , owl:NamedIndividual ; rdfs:comment "50S ribosomal protein L15"@en , "BSU01350;ribosomal protein L15;;"@en ; rdfs:label "rplO"@en , "BSU01350"@en , "RplO"@en ; @@ -297294,37 +297306,6 @@ bo:11293 a bo:341 , sybio:Protein , bo:342 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "11293"@en . - - a owl:Class ; - rdfs:comment "The directed movement of organic anions into, out of, within or between cells by means of some external agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage."@en ; - rdfs:label "organic anion transport"@en , "GO:0015711"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015711"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - -bo:11381 a bo:533 , owl:NamedIndividual , bo:532 , sybio:Protein ; - rdfs:comment "Copper transport protein ycnJ"@en , "BSU03950;putative copper import protein;"@en ; - rdfs:label "ycnJ"@en , "BSU03950"@en , "YcnJ"@en ; - sybio:AA "MKRNRWWIILLLFLVFLPKTSFAHAYIVKSSPGENSELKSAPAQVEIEFNEPVEEGFHYIKVYNSNGDRVDTDKTEIKKDNHHIMTVKLKKNLPKDVYRAEWNAVSADGHPVSGVIPFSIGKADGGFSSQKAADSALNPGTAADRAILYTALSLFIGTVFFHLFWYKGKSEQLVKRTRRILTGSIAALGLALLLQLPIQTKANAGGGWGSAFQPGYIRETLFETAGGSIWIIQAALFVLLALSVIPAIRKNRFSSFGYWTAPLIFFFGLLLAKAFTGHAAVVEEKTVGILMDFLHLTSASIWVGGIAALVLLLSKEWRQPDKTLAWETVRRFSPWALTAVGVILFSGLLNGFFIIRSMDSLFHTAYGQALLVKSGLFVFMLVLGAIHFLLTRKQRRTGISRTLKAEWAIGIAVLITAAVFTSLPSPPEPAPEPFYQTKAIENGQSVSLSISPNQPGKNVFELRVTDHNGDPVKNIQQITLTVYKTGLSGSENKSTFTLKEKTKGVFQDQNLSINEKGNWKIKVHGLTGDFNEINIMFTKTN"@en ; - sybio:accession "BSU03950"^^xsd:string , "C0SP95"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29282 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , , ; - sybio:molecularWeight "59791.93"^^xsd:string ; - sybio:pI "9.682091"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11381"@en . - bo:30181 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24920;"@en ; rdfs:label "yqgL"@en , "BSU24920"@en ; @@ -297368,6 +297349,25 @@ bo:26691 a bo:190 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26691"@en . +bo:11381 a bo:533 , owl:NamedIndividual , bo:532 , sybio:Protein ; + rdfs:comment "Copper transport protein ycnJ"@en , "BSU03950;putative copper import protein;"@en ; + rdfs:label "ycnJ"@en , "BSU03950"@en , "YcnJ"@en ; + sybio:AA "MKRNRWWIILLLFLVFLPKTSFAHAYIVKSSPGENSELKSAPAQVEIEFNEPVEEGFHYIKVYNSNGDRVDTDKTEIKKDNHHIMTVKLKKNLPKDVYRAEWNAVSADGHPVSGVIPFSIGKADGGFSSQKAADSALNPGTAADRAILYTALSLFIGTVFFHLFWYKGKSEQLVKRTRRILTGSIAALGLALLLQLPIQTKANAGGGWGSAFQPGYIRETLFETAGGSIWIIQAALFVLLALSVIPAIRKNRFSSFGYWTAPLIFFFGLLLAKAFTGHAAVVEEKTVGILMDFLHLTSASIWVGGIAALVLLLSKEWRQPDKTLAWETVRRFSPWALTAVGVILFSGLLNGFFIIRSMDSLFHTAYGQALLVKSGLFVFMLVLGAIHFLLTRKQRRTGISRTLKAEWAIGIAVLITAAVFTSLPSPPEPAPEPFYQTKAIENGQSVSLSISPNQPGKNVFELRVTDHNGDPVKNIQQITLTVYKTGLSGSENKSTFTLKEKTKGVFQDQNLSINEKGNWKIKVHGLTGDFNEINIMFTKTN"@en ; + sybio:accession "BSU03950"^^xsd:string , "C0SP95"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29282 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , , ; + sybio:molecularWeight "59791.93"^^xsd:string ; + sybio:pI "9.682091"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11381"@en . + a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom."@en ; @@ -297444,18 +297444,18 @@ bo:19615 a sybio:EC , owl:Class , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: 3-methyl-2-oxobutanoate + lipoamide = S-(2-methylpropanoyl)dihydrolipoamide + CO2."@en ; - rdfs:label "GO:0003863"@en , "branched-chain alpha-oxo acid dehydrogenase"@en , "alpha-ketoisocaproate dehydrogenase"@en , "alpha-ketoisocaproic-alpha-keto-alpha-methylvaleric dehydrogenase"@en , "3-methyl-2-oxobutanoate dehydrogenase"@en , "3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue 2-oxidoreductase"@en , "branched-chain ketoacid dehydrogenase"@en , "alpha-ketoisovalerate dehydrogenase"@en , "BCKDH"@en , "branched chain keto acid dehydrogenase"@en , "alpha-keto-alpha-methylvalerate dehydrogenase"@en , "branched-chain alpha-keto acid dehydrogenase"@en , "dehydrogenase branched chain alpha-keto acid"@en , "BCOAD"@en , "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)"@en , "branched-chain 2-oxo acid dehydrogenase"@en , "2-oxoisovalerate dehydrogenase"@en , "3-methyl-2-oxobutanoate:lipoamide oxidoreductase"@en , "alpha-oxoisocaproate dehydrogenase"@en , "alpha-ketoisocaproic dehydrogenase"@en , "dehydrogenase 2-oxoisovalerate"@en , "branched-chain 2-keto acid dehydrogenase"@en , "2-oxoisocaproate dehydrogenase"@en , "branched-chain dehydrogenase"@en , "branched-chain keto acid dehydrogenase"@en ; + rdfs:label "GO:0003863"@en , "alpha-ketoisocaproate dehydrogenase"@en , "alpha-ketoisocaproic-alpha-keto-alpha-methylvaleric dehydrogenase"@en , "branched-chain alpha-oxo acid dehydrogenase"@en , "3-methyl-2-oxobutanoate dehydrogenase"@en , "3-methyl-2-oxobutanoate:dihydrolipoyllysine-residue 2-oxidoreductase"@en , "branched-chain ketoacid dehydrogenase"@en , "alpha-ketoisovalerate dehydrogenase"@en , "BCKDH"@en , "branched chain keto acid dehydrogenase"@en , "alpha-keto-alpha-methylvalerate dehydrogenase"@en , "branched-chain alpha-keto acid dehydrogenase"@en , "dehydrogenase branched chain alpha-keto acid"@en , "BCOAD"@en , "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)"@en , "branched-chain 2-oxo acid dehydrogenase"@en , "2-oxoisovalerate dehydrogenase"@en , "3-methyl-2-oxobutanoate:lipoamide oxidoreductase"@en , "alpha-oxoisocaproate dehydrogenase"@en , "alpha-ketoisocaproic dehydrogenase"@en , "dehydrogenase 2-oxoisovalerate"@en , "branched-chain 2-keto acid dehydrogenase"@en , "2-oxoisocaproate dehydrogenase"@en , "branched-chain dehydrogenase"@en , "branched-chain keto acid dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11663 \"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity\""^^xsd:string ; + owl:hasValue "1.2.4.4-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.4.4"^^xsd:string ; + owl:hasValue "11663 \"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.4.4-RXN"^^xsd:string ; + owl:hasValue "1.2.4.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -297481,7 +297481,7 @@ bo:19703 a sybio:Enzyme , owl:NamedIndividual ; rdfs:label "NAD+ kinase"@en , "nicotinamide adenine dinucleotide kinase"@en , "DPN kinase"@en , "ATP:NAD+ 2'-phosphotransferase"@en , "NADK"@en , "NAD kinase"@en , "GO:0003951"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAD-KIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -297489,7 +297489,7 @@ bo:19703 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.23"^^xsd:string ; + owl:hasValue "NAD-KIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -297787,25 +297787,6 @@ bo:32953 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu34550"@en ; tawny:name "32953"@en . -bo:11168 a bo:473 , sybio:Protein , owl:NamedIndividual , bo:1889 ; - rdfs:comment "peptidase T (tripeptidase);BSU38920;"@en , "Peptidase T"@en ; - rdfs:label "BSU38920"@en , "PepT"@en , "pepT"@en ; - sybio:AA "MKEEIIERFTTYVKVDTQSDESVDTCPSTPGQLTLGNMLVDELKSIGMQDAAIDENGYVMATLPSNTEKDVPTIGFLAHVDTATDFTGKNVNPQIIESYDGKDIVLNEQLQVTLSPDQFPELSGYKGHTLITTDGTTLLGADNKAGIAEIMTAMDYLIKHPEIKHGTIRVAFTPDEEIGRGPHKFDVKRFNASFAYTVDGGPLGELEYESFNAAAAKITIKGNNVHPGTAKGKMINSAKIAMKLNSLLPADEAPEYTEGYEGFYHLLSIQGDVEETKLHYIIRDFDKENFQNRKETMKRAVEELQNEYGQDRILLDMNDQYYNMREKIEPVIEIVNIAKQAMENLGIEPKISPIRGGTDGSQLSYMGLPTPNIFTGGENFHGKFEYISVDNMVKAVNVIVEIAKQFEAQA"@en ; - sybio:accession "P55179"^^xsd:string , "BSU38920"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32325 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "45507.535"^^xsd:string ; - sybio:pI "4.729347"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11168"@en . - bo:26478 a sybio:Protein , owl:NamedIndividual , bo:1386 ; rdfs:comment "BSU23250;6,7-dimethyl-8-ribityllumazine synthase, beta subunit"@en , "6,7-dimethyl-8-ribityllumazine synthase;derived protein"@en ; rdfs:label "BSU23250"@en , "ribH"@en , "RibH"@en ; @@ -297826,17 +297807,36 @@ bo:26478 a sybio:Protein , owl:NamedIndividual , bo:1386 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26478"@en . +bo:11168 a bo:473 , sybio:Protein , owl:NamedIndividual , bo:1889 ; + rdfs:comment "peptidase T (tripeptidase);BSU38920;"@en , "Peptidase T"@en ; + rdfs:label "BSU38920"@en , "PepT"@en , "pepT"@en ; + sybio:AA "MKEEIIERFTTYVKVDTQSDESVDTCPSTPGQLTLGNMLVDELKSIGMQDAAIDENGYVMATLPSNTEKDVPTIGFLAHVDTATDFTGKNVNPQIIESYDGKDIVLNEQLQVTLSPDQFPELSGYKGHTLITTDGTTLLGADNKAGIAEIMTAMDYLIKHPEIKHGTIRVAFTPDEEIGRGPHKFDVKRFNASFAYTVDGGPLGELEYESFNAAAAKITIKGNNVHPGTAKGKMINSAKIAMKLNSLLPADEAPEYTEGYEGFYHLLSIQGDVEETKLHYIIRDFDKENFQNRKETMKRAVEELQNEYGQDRILLDMNDQYYNMREKIEPVIEIVNIAKQAMENLGIEPKISPIRGGTDGSQLSYMGLPTPNIFTGGENFHGKFEYISVDNMVKAVNVIVEIAKQFEAQA"@en ; + sybio:accession "P55179"^^xsd:string , "BSU38920"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32325 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "45507.535"^^xsd:string ; + sybio:pI "4.729347"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11168"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the transfer of a glucosyl group from UDP-glucose to an acceptor molecule."@en ; rdfs:label "UDP-glucosyltransferase"@en , "GO:0035251"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0035251"^^xsd:string ; + owl:hasValue "PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0035251"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -297867,24 +297867,6 @@ bo:30056 a owl:NamedIndividual , sybio:CDS ; "94.0"@en ; tawny:name "30056"@en . -bo:11256 a bo:281 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Putative ATP:guanido phosphotransferase yacI"@en , "BSU00850;protein tyrosine kinase"@en ; - rdfs:label "YacI"@en , "BSU00850"@en , "McsB"@en , "yacI"@en ; - sybio:AA "MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTRYSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESPFGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQRGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVGNIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGVLSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRPNERDIRRAALIRERLHLEMNGKRQEDESI"@en ; - sybio:accession "P37570"^^xsd:string , "BSU00850"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30928 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "41122.38"^^xsd:string ; - sybio:pI "5.241722"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:9536 , bo:11128 , bo:9590 , bo:9760 , bo:11257 , bo:9099 , bo:9558 , bo:9644 , bo:11399 , bo:9559 , bo:11314 , bo:11368 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11256"@en . - bo:26566 a owl:NamedIndividual , sybio:Protein , bo:538 ; rdfs:comment "BSU28270;3-isopropylmalate dehydrogenase"@en , "derived protein;3-isopropylmalate dehydrogenase"@en ; rdfs:label "leuB"@en , "LeuB"@en , "BSU28270"@en ; @@ -297905,6 +297887,24 @@ bo:26566 a owl:NamedIndividual , sybio:Protein , bo:538 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26566"@en . +bo:11256 a bo:281 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Putative ATP:guanido phosphotransferase yacI"@en , "BSU00850;protein tyrosine kinase"@en ; + rdfs:label "YacI"@en , "BSU00850"@en , "McsB"@en , "yacI"@en ; + sybio:AA "MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTRYSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESPFGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQRGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVGNIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGVLSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRPNERDIRRAALIRERLHLEMNGKRQEDESI"@en ; + sybio:accession "P37570"^^xsd:string , "BSU00850"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30928 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "41122.38"^^xsd:string ; + sybio:pI "5.241722"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:9536 , bo:11128 , bo:9590 , bo:9760 , bo:11257 , bo:9099 , bo:9558 , bo:9644 , bo:11399 , bo:9559 , bo:11314 , bo:11368 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11256"@en . + bo:30144 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU23160"@en ; rdfs:label "rluB"@en , "ypuL"@en , "BSU23160"@en ; @@ -298067,24 +298067,6 @@ bo:30320 a sybio:CDS , owl:NamedIndividual ; "11.0"@en ; tawny:name "30320"@en . -bo:26830 a owl:NamedIndividual , sybio:Protein , bo:1873 , bo:1874 ; - rdfs:comment "derived protein;Hydroxyethylthiazole kinase"@en , "BSU38300;hydroxyethylthiazole kinase"@en ; - rdfs:label "thiM"@en , "ThiK"@en , "Ipa-25d"@en , "ThiM"@en , "YwbJ"@en , "BSU38300"@en ; - sybio:AA "MDAQSAAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEWATIERVTVS"@en ; - sybio:accession "BSU38300"^^xsd:string , "P39593"^^xsd:string , "938519"^^xsd:string , "16080881"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32578 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "28212.025"^^xsd:string ; - sybio:pI "5.487923"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26830"@en . - bo:11520 a owl:NamedIndividual , sybio:Protein , bo:707 ; rdfs:comment "Diacylglycerol kinase"@en , "BSU06720;diacylglycerol kinase"@en ; rdfs:label "YerQ"@en , "BSU06720"@en , "DagK"@en , "dagK"@en ; @@ -298103,6 +298085,24 @@ bo:11520 a owl:NamedIndividual , sybio:Protein , bo:707 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11520"@en . +bo:26830 a owl:NamedIndividual , sybio:Protein , bo:1873 , bo:1874 ; + rdfs:comment "derived protein;Hydroxyethylthiazole kinase"@en , "BSU38300;hydroxyethylthiazole kinase"@en ; + rdfs:label "thiM"@en , "ThiK"@en , "Ipa-25d"@en , "ThiM"@en , "YwbJ"@en , "BSU38300"@en ; + sybio:AA "MDAQSAAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEWATIERVTVS"@en ; + sybio:accession "BSU38300"^^xsd:string , "P39593"^^xsd:string , "938519"^^xsd:string , "16080881"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32578 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "2.5 : Metabolism of coenzymes and prosthetic groups"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "28212.025"^^xsd:string ; + sybio:pI "5.487923"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26830"@en . + bo:24021 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "incomplete reaction (donor unidentified) - orphan"@en ; rdfs:label "C16193 + C00007 <=> C16196 + C00094"@en , "naphthalene disulfonate 1,2-dioxygenase"@en , " => "@en ; @@ -298245,7 +298245,7 @@ bo:12261 a owl:NamedIndividual , sybio:Compound ; rdfs:label "methionyl-transfer ribonucleic transformylase"@en , "methionyl-tRNA transformylase"@en , "N-terminal peptidyl-methionine N-formylation"@en , "formylmethionyl-transfer ribonucleic synthetase"@en , "mitochondrial N-terminal peptidyl-methionine N-formylation"@en , "GO:0004479"@en , "conversion of met-tRNAf to fmet-tRNA"@en , "conversion of mitochondrial met-tRNAf to fmet-tRNA"@en , "ribonucleic transformylase"@en , "methionyl ribonucleic formyltransferase"@en , "methionyl-tRNA Met formyltransferase"@en , "10-formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase"@en , "methionyl-transfer ribonucleate methyltransferase"@en , "methionyl-tRNA formyltransferase"@en , "N10-formyltetrahydrofolic-methionyl-transfer ribonucleic transformylase"@en , "methionyl-transfer RNA transformylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0001718"^^xsd:string ; + owl:hasValue "GO:0070128"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -298253,15 +298253,15 @@ bo:12261 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0070128"^^xsd:string ; + owl:hasValue "GO:0001718"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.9"^^xsd:string ; + owl:hasValue "GO:0004479"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004479"^^xsd:string ; + owl:hasValue "2.1.2.9"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -298312,11 +298312,11 @@ bo:32828 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0004567"@en , "exo-beta-D-mannanase"@en , "beta-mannoside mannohydrolase"@en , "beta-mannosidase"@en , "beta-D-mannosidase"@en , "mannanase"@en , "mannase"@en , "beta-D-mannoside mannohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.25-RXN"^^xsd:string ; + owl:hasValue "3.2.1.25"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.25"^^xsd:string ; + owl:hasValue "3.2.1.25-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -298362,15 +298362,15 @@ bo:32916 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13469 \"porphobilinogen synthase activity\""^^xsd:string ; + owl:hasValue "PORPHOBILSYNTH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004655"^^xsd:string ; + owl:hasValue "13469 \"porphobilinogen synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PORPHOBILSYNTH-RXN"^^xsd:string ; + owl:hasValue "GO:0004655"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -298382,19 +298382,19 @@ bo:32916 a sybio:CDS , owl:NamedIndividual ; rdfs:label "ATP:pyruvate 2-O-phosphotransferase"@en , "GO:0004743"@en , "phosphoenol transphosphorylase"@en , "phosphoenolpyruvate kinase"@en , "pyruvate kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.40"^^xsd:string ; + owl:hasValue "PEPDEPHOS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004743"^^xsd:string ; + owl:hasValue "2.7.1.40"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PEPDEPHOS-RXN"^^xsd:string ; + owl:hasValue "14240 \"pyruvate kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14240 \"pyruvate kinase activity\""^^xsd:string ; + owl:hasValue "GO:0004743"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -298435,11 +298435,11 @@ bo:30019 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15131 \"tyrosine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004831"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004831"^^xsd:string ; + owl:hasValue "15131 \"tyrosine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -298603,15 +298603,15 @@ bo:13090 a sybio:Compound , owl:NamedIndividual ; rdfs:label "ribosome biogenesis"@en , "ribosomal chaperone"@en , "GO:0042254"@en , "ribosome biogenesis and assembly"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Ribosome_biogenesis"^^xsd:string ; + owl:hasValue "GO:0042254"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007046"^^xsd:string ; + owl:hasValue "Ribosome_biogenesis"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042254"^^xsd:string ; + owl:hasValue "GO:0007046"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -298911,22 +298911,22 @@ bo:12400 a sybio:Compound , owl:NamedIndividual ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate."@en ; - rdfs:label "3-PGK"@en , "3-phosphoglyceric acid kinase"@en , "glycerophosphate kinase"@en , "glycerate 3-phosphate kinase"@en , "phosphoglycerokinase"@en , "phosphoglyceric acid kinase"@en , "phosphoglycerate kinase"@en , "3-phosphoglyceric kinase"@en , "ATP:3-phospho-D-glycerate 1-phosphotransferase"@en , "3-phosphoglycerate kinase"@en , "phosphoglyceric kinase"@en , "ATP:D-3-phosphoglycerate 1-phosphotransferase"@en , "ATP-3-phospho-D-glycerate-1-phosphotransferase"@en , "GO:0004618"@en , "PGK"@en , "3-phosphoglycerate phosphokinase"@en , "3-phosphoglyceric acid phosphokinase"@en ; + rdfs:label "3-phosphoglyceric acid phosphokinase"@en , "3-PGK"@en , "3-phosphoglyceric acid kinase"@en , "glycerophosphate kinase"@en , "glycerate 3-phosphate kinase"@en , "phosphoglycerokinase"@en , "phosphoglyceric acid kinase"@en , "phosphoglycerate kinase"@en , "3-phosphoglyceric kinase"@en , "ATP:3-phospho-D-glycerate 1-phosphotransferase"@en , "3-phosphoglycerate kinase"@en , "phosphoglyceric kinase"@en , "ATP:D-3-phosphoglycerate 1-phosphotransferase"@en , "ATP-3-phospho-D-glycerate-1-phosphotransferase"@en , "GO:0004618"@en , "PGK"@en , "3-phosphoglycerate phosphokinase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "PHOSGLYPHOS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004618"^^xsd:string ; + owl:hasValue "2.7.2.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13282 \"phosphoglycerate kinase activity\""^^xsd:string ; + owl:hasValue "GO:0004618"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.3"^^xsd:string ; + owl:hasValue "13282 \"phosphoglycerate kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -299258,6 +299258,17 @@ bo:1188 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1188"@en . +bo:1276 a owl:Class ; + rdfs:label "COG1657"@en ; + rdfs:subClassOf bo:233 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1657"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1276"@en . + bo:7001 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU22390;"@en ; rdfs:label "BSU22390"@en , "YpmA"@en ; @@ -299273,17 +299284,6 @@ bo:7001 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "7001"@en . -bo:1276 a owl:Class ; - rdfs:label "COG1657"@en ; - rdfs:subClassOf bo:233 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1657"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1276"@en . - bo:21948 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "NADP+ (see R04199) - orphan"@en ; rdfs:label "2,3,4,5-Tetrahydrodipicolinate"@en , "C03972 + C00003 <=> C03340 + C00004 + C00080"@en , " => "@en , "NAD+ oxidoreductase"@en ; @@ -299481,11 +299481,11 @@ bo:16567 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "PHNA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047400"^^xsd:string ; + owl:hasValue "COG2824"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2824"^^xsd:string ; + owl:hasValue "0047400"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -299811,17 +299811,6 @@ bo:17572 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035"@en ; tawny:name "17572"@en . -bo:683 a owl:Class ; - rdfs:label "COG0118"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0118"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "683"@en . - bo:29155 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00270"@en ; rdfs:label "yaaO"@en , "BSU00270"@en ; @@ -299858,6 +299847,17 @@ bo:1415 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1415"@en . +bo:683 a owl:Class ; + rdfs:label "COG0118"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0118"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "683"@en . + bo:17660 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5]"@en ; rdfs:label "LSC1"@en ; @@ -300009,35 +300009,35 @@ bo:4877 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "translational complex disassembly"@en , "translational termination"@en , "GO:0006415"@en , "protein synthesis termination"@en , "translation termination"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "523207 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141698 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "514182 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "GO:0006415"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141687 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "578116 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "515979 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "550841 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "540424 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "462009 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449136 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "581909 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "72764 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "536791 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "529589 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "547875 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -300045,71 +300045,71 @@ bo:4877 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547875 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "556994 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "584597 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "525025 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592804 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "480782 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585947 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "591596 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "523210 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "546075 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542548 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "584594 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "440261 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "579990 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507900 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "556016 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517790 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "141687 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526621 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "504825 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "565515 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "594883 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "578119 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141671 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "567021 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "565518 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "594484 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "546072 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "556994 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "530370 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "590321 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "578119 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558060 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "565515 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -300117,219 +300117,227 @@ bo:4877 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "466915 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "558060 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "590318 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "440261 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141671 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "542548 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "594883 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "594484 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006443"^^xsd:string ; + owl:hasValue "567021 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "556013 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "507900 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "529592 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "523210 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "556016 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "529592 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "579990 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "526621 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546075 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "585947 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "591596 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "592804 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "541416 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "462012 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "594487 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "470249 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536791 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "72764 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "550841 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "449136 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "480782 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "466915 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "525025 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "540424 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "550844 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "551526 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "551526 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "529589 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141667 \"GTP bound eRF3:eRF1 complex binds the peptidyl-tRNA:mRNA:Ribosome complex\""^^xsd:string ; + owl:hasValue "500822 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581909 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "594487 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "462009 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "541416 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "565518 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "500825 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141696 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "540427 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531419 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "GO:0006456"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "500822 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "514182 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546072 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "480779 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470249 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "514179 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "462012 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "584597 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "584594 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141673 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546870 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "485039 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568706 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "552449 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "440258 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "556013 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487929 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "GO:0006443"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552449 \"Eukaryotic Translation Termination\""^^xsd:string ; + owl:hasValue "550844 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "485039 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141691 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "514179 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "445575 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "445575 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "440258 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141691 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "568706 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "480779 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "515979 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "504825 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "546870 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141673 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "590321 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "578116 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "487929 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006415"^^xsd:string ; + owl:hasValue "590318 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "141698 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "517790 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006456"^^xsd:string ; + owl:hasValue "531419 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "540427 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141696 \"Eukaryotic Translation Termination\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "500825 \"GTP Hydrolysis by eRF3 bound to the eRF1:mRNA:polypeptide:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "141667 \"GTP bound eRF3:eRF1 complex binds the peptidyl-tRNA:mRNA:Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "530370 \"Polypeptide release from the eRF3-GDP:eRF1:mRNA:80S Ribosome complex\""^^xsd:string ; + owl:hasValue "523207 \"GTP bound eRF3:eRF1 complex binds the peptidyl tRNA:mRNA:80S Ribosome complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:partOf . +bo:4965 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ykvI"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28786 ; + sybio:operonGenes "ykvI"@en ; + tawny:name "4965"@en . + bo:16618 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "3-cyanoalanine hydratase [EC:4.2.1.65]"@en ; rdfs:label "E4.2.1.65"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q5QGZ8"^^xsd:string ; + owl:hasValue "Q3LRV4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047558"^^xsd:string ; + owl:hasValue "Q5QGZ8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q3LRV4"^^xsd:string ; + owl:hasValue "0047558"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -300337,14 +300345,6 @@ bo:16618 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K13036"@en ; tawny:name "16618"@en . -bo:4965 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ykvI"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28786 ; - sybio:operonGenes "ykvI"@en ; - tawny:name "4965"@en . - bo:16706 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "1,3-beta-glucan synthase [EC:2.4.1.34]"@en ; rdfs:label "E2.4.1.34"@en ; @@ -300511,11 +300511,11 @@ bo:17359 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "DPNH-menadione reductase"@en , "NADH-quinone oxidoreductase"@en , "D-diaphorase"@en , "reduced nicotinamide adenine dinucleotide dehydrogenase"@en , "oxidoreductase"@en , "NADH dehydrogenase (quinone)"@en , "GO:0050136"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.99.5"^^xsd:string ; + owl:hasValue "NADH-DEHYDROGENASE-QUINONE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NADH-DEHYDROGENASE-QUINONE-RXN"^^xsd:string ; + owl:hasValue "1.6.99.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -301313,6 +301313,18 @@ bo:10093 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10093"@en . +bo:25491 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.2.3.11"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.3.11"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25491"@en . + bo:10181 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein yobJ"@en , "BSU18980;hypothetical protein"@en ; rdfs:label "yobJ"@en , "YobJ"@en , "BSU18980"@en ; @@ -301329,18 +301341,6 @@ bo:10181 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10181"@en . -bo:25491 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.2.3.11"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.3.11"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25491"@en . - bo:6498 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yvcRS"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -301597,11 +301597,11 @@ bo:24801 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "mannosyltransferase"@en , "GO:0000030"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7672 \"mannosyltransferase activity\""^^xsd:string ; + owl:hasValue "2.4.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.-"^^xsd:string ; + owl:hasValue "7672 \"mannosyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -301717,11 +301717,11 @@ bo:19156 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "ALG12"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004584"^^xsd:string ; + owl:hasValue "GT22"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT22"^^xsd:string ; + owl:hasValue "0004584"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -301735,11 +301735,11 @@ bo:19156 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "uridylate kinase"@en , "GO:0009041"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.-"^^xsd:string ; + owl:hasValue "GO:0009041"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009041"^^xsd:string ; + owl:hasValue "2.7.4.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -301889,6 +301889,17 @@ bo:25278 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11743 ; tawny:name "25278"@en . +bo:25366 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "KdsB - reversible"@en ; + rdfs:label "CTP"@en , "3-deoxy-D-manno-octulosonate cytidylyltransferase"@en , "cpd:C04121 <=> cpd:C04121"@en , "C00063 + C01187 <=> C00013 + C04121"@en ; + sybio:accession "RN:R03351"^^xsd:string ; + sybio:catalyzedBy bo:19051 ; + sybio:catalyzingClass bo:25367 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25366"@en . + bo:10056 a bo:458 , bo:459 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU09530;aldo/keto reductase specific for NADPH"@en , "General stress protein 69"@en ; rdfs:label "yhdN"@en , "YhdN"@en , "BSU09530"@en ; @@ -301907,17 +301918,6 @@ bo:10056 a bo:458 , bo:459 , owl:NamedIndividual , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "10056"@en . -bo:25366 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "KdsB - reversible"@en ; - rdfs:label "CTP"@en , "3-deoxy-D-manno-octulosonate cytidylyltransferase"@en , "cpd:C04121 <=> cpd:C04121"@en , "C00063 + C01187 <=> C00013 + C04121"@en ; - sybio:accession "RN:R03351"^^xsd:string ; - sybio:catalyzedBy bo:19051 ; - sybio:catalyzingClass bo:25367 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25366"@en . - bo:25454 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.2.1.51"@en ; @@ -302222,23 +302222,6 @@ bo:26283 a bo:571 , sybio:Protein , bo:403 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "26283"@en . -bo:11061 a owl:NamedIndividual , bo:1609 , bo:1014 , sybio:Protein ; - rdfs:comment "BSU35190;putative phosphotransferase"@en , "Uncharacterized phosphotransferase yvkC"@en ; - rdfs:label "BSU35190"@en , "YvkC"@en , "yvkC"@en ; - sybio:AA "MYSVLFRQAEESSQLAGAKGMNLIKLTKHGLPVPDGFIIQTNALARFMEDNQLQETSENVEGGIISGTFSDELKDELTSSFYKLRESYRSVAVRSSSASEDLEGASFAGQYETYLNIKTEEEFLAKVKECWASFFSGRVSSYKKKMNNQIAEPLMGIVVQGLIDSEMSGVIFSRNPVTHDDRELLISASYGLGEAVVSGNVTPDTFIVNKSSFEIQKEIGAKEIYMESAAEGIAEKETSEDMRSRFCLTDEQVIELAEITKKTEDLYGYPVDIEFGIADHQIYLLQARPITTIDQDKKAAEEKRSFMITDTDMNDFWLNMESNIEGPVSPLFSSFIVPALEYGLKKSMQKFPIGVVVDEVKLYRGHIYSKNQGGQQPPSEDCGKELFPILSEHMYDIINHTYLPFYRTLDQLAQTEHTAESALEAFQKLKAFYLTAYEEHFNIVFPQILLTNKLQAMYQDIQGESENAHFYEMLTGKMNKSLETDRCLWLFSVEVQENPNLLAIFENNKPEQLQEKLEQTDEGRHFLKNVHEFLQEYGWRSVKSHDLIEQIWVENPYFALANIQNYVRNGYHFDNEFQKTKEKREKLYNEFLESIEDPGLRTEFDRYYQWTLNSANIKDDHHFYIDAMLDAKARIFLLKIGELLAENGVIQDREDLWFLYDDEVEQALLHPVSLQEKAEKRRQIFHEYELAQAPAYLGTPTKEQLKAAEEIVGAVIEDEKNTENHIFGIAASSGIATGPVKIIRDANEFSQFAPGDVLVCKMTTPLWTSLFQDAKAIITDTGGILSHAAIIAREYGIPAVLGTRTATERLRDGDIITVDGSSGKITVVSRS"@en ; - sybio:accession "BSU35190"^^xsd:string , "O34796"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30569 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "94444.97"^^xsd:string ; - sybio:pI "4.811485"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11061"@en . - bo:26371 a bo:270 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "dihydropteroate synthase;BSU00770"@en , "Dihydropteroate synthase;derived protein"@en ; rdfs:label "BSU00770"@en , "sul"@en , "Sul"@en ; @@ -302258,6 +302241,23 @@ bo:26371 a bo:270 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26371"@en . +bo:11061 a owl:NamedIndividual , bo:1609 , bo:1014 , sybio:Protein ; + rdfs:comment "BSU35190;putative phosphotransferase"@en , "Uncharacterized phosphotransferase yvkC"@en ; + rdfs:label "BSU35190"@en , "YvkC"@en , "yvkC"@en ; + sybio:AA "MYSVLFRQAEESSQLAGAKGMNLIKLTKHGLPVPDGFIIQTNALARFMEDNQLQETSENVEGGIISGTFSDELKDELTSSFYKLRESYRSVAVRSSSASEDLEGASFAGQYETYLNIKTEEEFLAKVKECWASFFSGRVSSYKKKMNNQIAEPLMGIVVQGLIDSEMSGVIFSRNPVTHDDRELLISASYGLGEAVVSGNVTPDTFIVNKSSFEIQKEIGAKEIYMESAAEGIAEKETSEDMRSRFCLTDEQVIELAEITKKTEDLYGYPVDIEFGIADHQIYLLQARPITTIDQDKKAAEEKRSFMITDTDMNDFWLNMESNIEGPVSPLFSSFIVPALEYGLKKSMQKFPIGVVVDEVKLYRGHIYSKNQGGQQPPSEDCGKELFPILSEHMYDIINHTYLPFYRTLDQLAQTEHTAESALEAFQKLKAFYLTAYEEHFNIVFPQILLTNKLQAMYQDIQGESENAHFYEMLTGKMNKSLETDRCLWLFSVEVQENPNLLAIFENNKPEQLQEKLEQTDEGRHFLKNVHEFLQEYGWRSVKSHDLIEQIWVENPYFALANIQNYVRNGYHFDNEFQKTKEKREKLYNEFLESIEDPGLRTEFDRYYQWTLNSANIKDDHHFYIDAMLDAKARIFLLKIGELLAENGVIQDREDLWFLYDDEVEQALLHPVSLQEKAEKRRQIFHEYELAQAPAYLGTPTKEQLKAAEEIVGAVIEDEKNTENHIFGIAASSGIATGPVKIIRDANEFSQFAPGDVLVCKMTTPLWTSLFQDAKAIITDTGGILSHAAIIAREYGIPAVLGTRTATERLRDGDIITVDGSSGKITVVSRS"@en ; + sybio:accession "BSU35190"^^xsd:string , "O34796"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30569 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "94444.97"^^xsd:string ; + sybio:pI "4.811485"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11061"@en . + bo:7378 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Cyclomaltodextrinase"@en ; rdfs:label "Q9R5C3"@en ; @@ -302491,6 +302491,17 @@ bo:32369 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu18240"@en ; tawny:name "32369"@en . +bo:13569 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C3H3ClO"@en ; + rdfs:label "C3H3ClO"@en , "cis-3-Chloroallyl aldehyde"@en , "cis-3-Chloro-2-propenal"@en ; + sybio:accession "47205656"^^xsd:string , "C16348"^^xsd:string ; + sybio:consumedBy bo:24310 , bo:24315 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24315 , bo:24310 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16348"@en ; + tawny:name "13569"@en . + bo:28879 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU40370"@en ; rdfs:label "BSU40370"@en , "yycJ"@en ; @@ -302517,17 +302528,6 @@ bo:28879 a owl:NamedIndividual , sybio:CDS ; "69.0"@en ; tawny:name "28879"@en . -bo:13569 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C3H3ClO"@en ; - rdfs:label "C3H3ClO"@en , "cis-3-Chloroallyl aldehyde"@en , "cis-3-Chloro-2-propenal"@en ; - sybio:accession "47205656"^^xsd:string , "C16348"^^xsd:string ; - sybio:consumedBy bo:24310 , bo:24315 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24315 , bo:24310 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C16348"@en ; - tawny:name "13569"@en . - bo:32457 a sybio:CDS , owl:NamedIndividual ; rdfs:label "ythC"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -302656,7 +302656,7 @@ bo:13833 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0004372"@en , "5 10-methylenetetrahydrofolate:glycine hydroxymethyltransferase"@en , "allothreonine aldolase"@en , "serine hydroxymethyltransferase"@en , "serine hydroxymethylase"@en , "serine transhydroxymethylase"@en , "serine aldolase"@en , "L-serine hydroxymethyltransferase"@en , "glycine hydroxymethyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYOHMETRANS-RXN"^^xsd:string ; + owl:hasValue "2.1.2.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -302664,11 +302664,11 @@ bo:13833 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.1"^^xsd:string ; + owl:hasValue "GO:0004372"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004372"^^xsd:string ; + owl:hasValue "GLYOHMETRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -303050,11 +303050,11 @@ bo:14662 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "PORB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0019164"^^xsd:string ; + owl:hasValue "COG1013"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1013"^^xsd:string ; + owl:hasValue "0019164"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -303151,7 +303151,7 @@ bo:21790 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10440 \"galactokinase activity\""^^xsd:string ; + owl:hasValue "2.7.1.6"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -303159,7 +303159,7 @@ bo:21790 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.6"^^xsd:string ; + owl:hasValue "10440 \"galactokinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -303469,11 +303469,11 @@ bo:14713 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "CITE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008815"^^xsd:string ; + owl:hasValue "COG2301"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2301"^^xsd:string ; + owl:hasValue "0008815"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -303525,6 +303525,12 @@ bo:27126 a sybio:FFL , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; tawny:name "27126"@en . +bo:27214 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "sigA_codY_gabP"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27214"@en . + bo:21489 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C02642 => cpd:C02642"@en , "N-Carbamoyl-beta-alanine amidohydrolase"@en , "C02642 + C00001 <=> C00099 + C00011 + C00014"@en ; @@ -303536,12 +303542,6 @@ bo:21489 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11716 , bo:11578 , bo:11749 , bo:11629 ; tawny:name "21489"@en . -bo:27214 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "sigA_codY_gabP"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27214"@en . - bo:21577 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "C00041 + C00026 <=> C00022 + C00025"@en , "cpd:C00041 <=> cpd:C00041"@en , "2-oxoglutarate aminotransferase"@en , "L-Alanine"@en ; @@ -303626,11 +303626,11 @@ bo:15278 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AKBLIG-RXN"^^xsd:string ; + owl:hasValue "2.3.1.29"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.29"^^xsd:string ; + owl:hasValue "AKBLIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -303694,11 +303694,11 @@ bo:15454 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AGXT2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008453"^^xsd:string ; + owl:hasValue "0047305"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047305"^^xsd:string ; + owl:hasValue "0008453"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -303716,14 +303716,6 @@ bo:15542 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00613"@en ; tawny:name "15542"@en . -bo:16196 a sybio:KOGE , owl:NamedIndividual ; - rdfs:label "E1.14.12.-"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16197 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03384"@en ; - tawny:name "16196"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells."@en ; @@ -303736,6 +303728,14 @@ bo:16196 a sybio:KOGE , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16196 a sybio:KOGE , owl:NamedIndividual ; + rdfs:label "E1.14.12.-"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16197 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03384"@en ; + tawny:name "16196"@en . + bo:15630 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "enolase-phosphatase E1 [EC:3.1.3.77]"@en ; rdfs:label "ENOPH1"@en , "MTNC"@en ; @@ -303860,23 +303860,6 @@ bo:22582 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11612 ; tawny:name "22582"@en . -bo:3589 a sybio:NegativelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; - rdfs:comment "Negative"@en ; - rdfs:label "CcpA_xynP"@en ; - sybio:NA "TGTTTTGAAAGCGCTTTTATAAAA"^^xsd:string ; - sybio:annotatedSequence "TGTTT{TGAAAGCGCTTTTA}TAAAA"@en ; - sybio:begin "1887249"@en ; - sybio:boundBy bo:6807 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1887272"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2960 ; - sybio:partOf bo:27717 ; - sybio:pmid "8012596,9973552"^^xsd:string ; - sybio:regulationType "Negative"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3589"@en . - bo:9314 a bo:1913 , bo:962 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Putative mannosyltransferase yycA"@en , "BSU40490;putative integral inner membrane protein; putative glycosyl transferase;"@en ; rdfs:label "BSU40490"@en , "yycA"@en , "YycA"@en ; @@ -303896,6 +303879,23 @@ bo:9314 a bo:1913 , bo:962 , owl:NamedIndividual , sybio:Pr sybio:taxId "[224308, 1423]"@en ; tawny:name "9314"@en . +bo:3589 a sybio:NegativelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; + rdfs:comment "Negative"@en ; + rdfs:label "CcpA_xynP"@en ; + sybio:NA "TGTTTTGAAAGCGCTTTTATAAAA"^^xsd:string ; + sybio:annotatedSequence "TGTTT{TGAAAGCGCTTTTA}TAAAA"@en ; + sybio:begin "1887249"@en ; + sybio:boundBy bo:6807 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1887272"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2960 ; + sybio:partOf bo:27717 ; + sybio:pmid "8012596,9973552"^^xsd:string ; + sybio:regulationType "Negative"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3589"@en . + bo:22670 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "BenA,BenB,BenC - orphan"@en ; rdfs:label "C00180 + C00004 + C00080 + C00007 <=> C06321 + C00003"@en , " => "@en ; @@ -303928,11 +303928,11 @@ bo:3677 a sybio:Operator , sybio:PositivelyRegulatedOpera rdfs:label "GO:0005215"@en , "small-molecule carrier or transporter"@en , "transporter"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005215"^^xsd:string ; + owl:hasValue "1391 \"transporter activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1391 \"transporter activity\""^^xsd:string ; + owl:hasValue "GO:0005215"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -304026,7 +304026,7 @@ bo:21628 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "2-dehydropantoate 2-reductase"@en , "2-oxidoreductase"@en , "KPA reductase"@en , "ketopantoate reductase"@en , "2-ketopantoic acid reductase"@en , "2-ketopantoate reductase"@en , "2-oxopantoate reductase"@en , "GO:0008677"@en , "ketopantoic acid reductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2-DEHYDROPANTOATE-REDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0008677"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -304034,7 +304034,7 @@ bo:21628 a sybio:EC , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008677"^^xsd:string ; + owl:hasValue "2-DEHYDROPANTOATE-REDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -304080,7 +304080,7 @@ bo:21716 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "6-diaminoheptanedioate gamma-ligase"@en , "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 6-diaminopimelate synthetase"@en , "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2 6-diamino-heptanedioate ligase"@en , "UDP-N-acetylmuramyl-tripeptide synthetase"@en , "MurE synthetase"@en , "GO:0008765"@en , "UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.13"^^xsd:string ; + owl:hasValue "GO:0008765"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -304088,7 +304088,7 @@ bo:21716 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008765"^^xsd:string ; + owl:hasValue "6.3.2.13"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -304122,15 +304122,15 @@ bo:21804 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0008853"@en , "exonuclease III"@en , "E. coli exonuclease III"@en , "Escherichia coli exonuclease III"@en , "exodeoxyribonuclease III"@en , "endoribonuclease III"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.11.2-RXN"^^xsd:string ; + owl:hasValue "3.1.11.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008853"^^xsd:string ; + owl:hasValue "3.1.11.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.11.2"^^xsd:string ; + owl:hasValue "GO:0008853"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -304163,11 +304163,11 @@ bo:1220 a owl:Class ; rdfs:label "oxidoreductase"@en , "GO:0051745"@en , "4-hydroxy-3-methylbut-2-enyl diphosphate reductase"@en , "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051745"^^xsd:string ; + owl:hasValue "ISPH2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ISPH2-RXN"^^xsd:string ; + owl:hasValue "GO:0051745"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -304183,15 +304183,15 @@ bo:1220 a owl:Class ; rdfs:label "nitric oxide oxidoreductase"@en , "GO:0008941"@en , "nitric oxide dioxygenase"@en , "NOD"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008941"^^xsd:string ; + owl:hasValue "R621-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.12.17"^^xsd:string ; + owl:hasValue "GO:0008941"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R621-RXN"^^xsd:string ; + owl:hasValue "1.14.12.17"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -304242,6 +304242,14 @@ bo:15505 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4594 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydjL"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30995 ; + sybio:operonGenes "ydjL"@en ; + tawny:name "4594"@en . + bo:16247 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "3-oxoadipate enol-lactonase [EC:3.1.1.24]"@en ; rdfs:label "PCAD"@en , "E3.1.1.24"@en ; @@ -304252,14 +304260,6 @@ bo:16247 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01055"@en ; tawny:name "16247"@en . -bo:4594 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydjL"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30995 ; - sybio:operonGenes "ydjL"@en ; - tawny:name "4594"@en . - bo:4682 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yfkF_terminator"@en ; sybio:NA "AAAAAGCCTCCCGACATCATGTCAGGAGGCTTTTATGCTAATGGT"^^xsd:string ; @@ -304272,15 +304272,6 @@ bo:4682 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4681 ; tawny:name "4682"@en . -bo:16335 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; - rdfs:label "YUCCA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16334 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; - tawny:name "16335"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety."@en ; @@ -304293,6 +304284,27 @@ bo:16335 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16335 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; + rdfs:label "YUCCA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16334 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; + tawny:name "16335"@en . + +bo:4770 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "senS_terminator"@en ; + sybio:NA "GAACACCGAAGGCTCTTATCGTTTAGATAAGGGCCTTTTTTGTATGAAAA"^^xsd:string ; + sybio:annotatedSequence "GAACACCGAA{left}GGCTCTTATC{/left}GTTTA{right}GATAAGGGCC{/right}TTTTTTGTATGAAAA"@en ; + sybio:begin "959247"@en ; + sybio:deltaGo "-17.6"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "959296"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4769 ; + tawny:name "4770"@en . + a owl:Class ; rdfs:comment "The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; @@ -304318,18 +304330,6 @@ bo:16423 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12706"@en ; tawny:name "16423"@en . -bo:4770 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "senS_terminator"@en ; - sybio:NA "GAACACCGAAGGCTCTTATCGTTTAGATAAGGGCCTTTTTTGTATGAAAA"^^xsd:string ; - sybio:annotatedSequence "GAACACCGAA{left}GGCTCTTATC{/left}GTTTA{right}GATAAGGGCC{/right}TTTTTTGTATGAAAA"@en ; - sybio:begin "959247"@en ; - sybio:deltaGo "-17.6"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "959296"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4769 ; - tawny:name "4770"@en . - bo:28006 a sybio:RBS , owl:NamedIndividual ; rdfs:label "bofA_RBS"@en ; sybio:NA "GAGATGAGAAGATTC"^^xsd:string ; @@ -304575,11 +304575,11 @@ bo:17164 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "AYR1"@en , "E1.1.1.101"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000140"^^xsd:string ; + owl:hasValue "COG1028"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1028"^^xsd:string ; + owl:hasValue "0000140"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -304640,37 +304640,37 @@ bo:17252 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07412+K07413+K07418+K07425"@en ; tawny:name "17252"@en . -bo:363 a owl:Class ; - rdfs:label "COG0541"@en ; - rdfs:subClassOf bo:304 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0541"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "363"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate.;"@en ; - rdfs:label "ATP:GTP 3'-diphosphotransferase"@en , "GPSII"@en , "GO:0008728"@en , "guanosine 3' 5'-polyphosphate synthase"@en , "GTP pyrophosphokinase"@en , "guanosine pentaphosphate synthetase"@en , "GTP diphosphokinase"@en , "ATP-GTP 3'-diphosphotransferase"@en , "synthetase II"@en , "stringent factor"@en , "ppGpp synthetase I"@en , "GPSI"@en , "synthetase I"@en , "guanosine 5' 3'-polyphosphate synthetase"@en ; + rdfs:label "ATP:GTP 3'-diphosphotransferase"@en , "GO:0008728"@en , "GPSII"@en , "guanosine 3' 5'-polyphosphate synthase"@en , "GTP pyrophosphokinase"@en , "guanosine pentaphosphate synthetase"@en , "GTP diphosphokinase"@en , "ATP-GTP 3'-diphosphotransferase"@en , "synthetase II"@en , "stringent factor"@en , "ppGpp synthetase I"@en , "GPSI"@en , "synthetase I"@en , "guanosine 5' 3'-polyphosphate synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.6.5"^^xsd:string ; + owl:hasValue "GTPPYPHOSKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008728"^^xsd:string ; + owl:hasValue "2.7.6.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GTPPYPHOSKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0008728"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:363 a owl:Class ; + rdfs:label "COG0541"@en ; + rdfs:subClassOf bo:304 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0541"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "363"@en . + bo:10961 a sybio:Protein , bo:381 , bo:1718 , owl:NamedIndividual ; rdfs:comment "BSU32610;fructoselysine-6-P-deglycase"@en , "Fructosamine deglycase frlB"@en ; rdfs:label "FrlB"@en , "frlB"@en , "BSU32610"@en , "YurP"@en ; @@ -304721,18 +304721,6 @@ bo:451 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "451"@en . -bo:23286 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.2.1.28"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.28"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "23286"@en . - bo:29011 a sybio:KinaseEncodingCDS , sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU16430;"@en , "chemotactic two-component sensor histidine kinase (EC:2.7.3.-)"@en ; rdfs:label "cheN"@en , "BSU16430"@en , "cheA"@en ; @@ -304760,6 +304748,18 @@ bo:29011 a sybio:KinaseEncodingCDS , sybio:CDS , owl:NamedInd sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu16430"@en ; tawny:name "29011"@en . +bo:23286 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.2.1.28"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.2.1.28"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "23286"@en . + bo:23374 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.3.1.4"@en ; @@ -305159,11 +305159,11 @@ bo:10924 a bo:353 , bo:356 , sybio:Protein , bo:632 , owl: rdfs:label "GO:0016773"@en , "phosphotransferase activity, alcohol group as acceptor"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016773"^^xsd:string ; + owl:hasValue "2.7.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.-"^^xsd:string ; + owl:hasValue "GO:0016773"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -305204,11 +305204,11 @@ bo:414 a owl:Class ; rdfs:label "UDP-N-acetyl-D-mannosamine:N-acetyl-beta-D-glucosaminyldiphosphoundecaprenol beta-1 4-N-acetylmannosaminyltransferase"@en , "N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase"@en , "GO:0047244"@en , "N-acetylmannosaminyltransferase"@en , "uridine diphosphoacetyl-mannosamineacetylglucosaminylpyrophosphorylundecaprenol acetylmannosaminyltransferase"@en , "UDP-N-acetylmannosamine:N-acetylglucosaminyl diphosphorylundecaprenol N-acetylmannosaminyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.187"^^xsd:string ; + owl:hasValue "TEICHOICSYN2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TEICHOICSYN2-RXN"^^xsd:string ; + owl:hasValue "2.4.1.187"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -305400,17 +305400,6 @@ bo:30377 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "30377"@en . -bo:11577 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00232"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00232"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11577"@en . - bo:26887 a sybio:Protein , owl:NamedIndividual , bo:264 ; rdfs:comment "pantothenate kinase;BSU00700;;"@en , "Type III pantothenate kinase;derived protein"@en ; rdfs:label "CoaX"@en , "YacB"@en , "coaX"@en , "BSU00700"@en ; @@ -305431,6 +305420,17 @@ bo:26887 a sybio:Protein , owl:NamedIndividual , bo:264 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26887"@en . +bo:11577 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00232"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00232"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11577"@en . + bo:30465 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32770"@en ; rdfs:label "yusE"@en , "BSU32770"@en ; @@ -305456,17 +305456,6 @@ bo:30465 a owl:NamedIndividual , sybio:CDS ; "5.0"@en ; tawny:name "30465"@en . -bo:11665 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00564"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00564"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11665"@en . - bo:26975 a owl:NamedIndividual , sybio:Protein , bo:648 ; rdfs:comment "BSU05900;thiamine-monophosphate kinase;;"@en , "Thiamine-monophosphate kinase;;derived protein"@en ; rdfs:label "YdiA"@en , "BSU05900"@en , "ThiL"@en , "YdxA"@en , "thiL"@en ; @@ -305486,6 +305475,17 @@ bo:26975 a owl:NamedIndividual , sybio:Protein , bo:648 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26975"@en . +bo:11665 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00564"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00564"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11665"@en . + bo:18044 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "ferroxidase [EC:1.16.3.1]"@en ; rdfs:label "CP"@en , "E1.16.3.1"@en ; @@ -305828,16 +305828,6 @@ bo:31470 a owl:NamedIndividual , sybio:CDS ; "3.0"@en ; tawny:name "31470"@en . -bo:27980 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "folEB_RBS"@en ; - sybio:NA "TAGTGAGAGGAGTTTTCTGA"^^xsd:string ; - sybio:begin "364239"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "364258"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30797 ; - tawny:name "27980"@en . - bo:12670 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C8H7ClO2"@en ; rdfs:label "C8H7ClO2"@en , "4-Chlorophenylacetic acid"@en , "4-Chlorophenylacetate"@en ; @@ -305848,6 +305838,16 @@ bo:12670 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03077"@en ; tawny:name "12670"@en . +bo:27980 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "folEB_RBS"@en ; + sybio:NA "TAGTGAGAGGAGTTTTCTGA"^^xsd:string ; + sybio:begin "364239"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "364258"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30797 ; + tawny:name "27980"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle."@en ; @@ -305929,6 +305929,17 @@ bo:30428 a sybio:CDS , owl:NamedIndividual ; "42.0"@en ; tawny:name "30428"@en . +bo:11628 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00401"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00401"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11628"@en . + bo:26938 a sybio:Protein , owl:NamedIndividual , bo:209 ; rdfs:comment "derived protein;Methyl-accepting chemotaxis protein tlpC"@en , "BSU03440;methyl-accepting chemotaxis protein"@en ; rdfs:label "tlpC"@en , "BSU03440"@en , "TlpC"@en ; @@ -305953,17 +305964,6 @@ bo:26938 a sybio:Protein , owl:NamedIndividual , bo:209 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26938"@en . -bo:11628 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00401"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00401"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11628"@en . - bo:18007 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5]"@en ; rdfs:label "FWDA"@en , "FMDA"@en , "E1.2.99.5A"@en ; @@ -306757,16 +306757,26 @@ bo:32350 a sybio:CDS , owl:NamedIndividual ; rdfs:label "ATP-binding cassette transporter"@en , "ABC transporter"@en , "ATPase activity, coupled to transmembrane movement of substances"@en , "ATP binding cassette transporter"@en , "ABC-type uptake permease"@en , "ABC-type efflux porter"@en , "ABC-type efflux permease"@en , "GO:0042626"@en , "mating pheromone exporter"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042626"^^xsd:string ; + owl:hasValue "78033 \"ATPase activity, coupled to transmembrane movement of substances\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "78033 \"ATPase activity, coupled to transmembrane movement of substances\""^^xsd:string ; + owl:hasValue "GO:0042626"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:13550 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C3H8O"@en ; + rdfs:label "Propan-2-ol"@en , "C3H8O"@en , "Isopropanol"@en , "2-Propanol"@en ; + sybio:accession "B00359"^^xsd:string , "4963"^^xsd:string , "67-63-0"^^xsd:string , "C01845"^^xsd:string , "17824"^^xsd:string ; + sybio:consumedBy bo:24302 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01845"@en ; + tawny:name "13550"@en . + bo:28860 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "dephosphocoenzyme A kinase (EC:2.7.1.24)"@en , "BSU29060"@en ; rdfs:label "coaE"@en , "BSU29060"@en , "ytaG"@en ; @@ -306794,16 +306804,6 @@ bo:28860 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu29060"@en ; tawny:name "28860"@en . -bo:13550 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C3H8O"@en ; - rdfs:label "Propan-2-ol"@en , "C3H8O"@en , "Isopropanol"@en , "2-Propanol"@en ; - sybio:accession "B00359"^^xsd:string , "4963"^^xsd:string , "67-63-0"^^xsd:string , "C01845"^^xsd:string , "17824"^^xsd:string ; - sybio:consumedBy bo:24302 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01845"@en ; - tawny:name "13550"@en . - bo:9867 a sybio:Protein , owl:NamedIndividual , bo:876 ; rdfs:comment "putative integral inner membrane protein;BSU10570"@en , "Uncharacterized protein yhjN"@en ; rdfs:label "BSU10570"@en , "yhjN"@en , "YhjN"@en ; @@ -306906,16 +306906,6 @@ bo:31308 a owl:NamedIndividual , sybio:CDS ; "13.0"@en ; tawny:name "31308"@en . -bo:27818 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "araE_RBS_upstream"@en ; - sybio:NA "TCA"^^xsd:string ; - sybio:begin "3485489"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3485487"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27817 ; - tawny:name "27818"@en . - bo:12508 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C6H11NO3"@en ; rdfs:label "(S)-5-Amino-3-oxohexanoate"@en , "(S)-5-Amino-3-oxohexanoic acid"@en , "C6H11NO3"@en ; @@ -306926,6 +306916,16 @@ bo:12508 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03656"@en ; tawny:name "12508"@en . +bo:27818 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "araE_RBS_upstream"@en ; + sybio:NA "TCA"^^xsd:string ; + sybio:begin "3485489"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3485487"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27817 ; + tawny:name "27818"@en . + bo:7234 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Sensor protein"@en ; rdfs:label "subS"@en ; @@ -307384,15 +307384,15 @@ bo:13601 a owl:NamedIndividual , sybio:Compound ; rdfs:label "dephosphocoenzyme A kinase"@en , "dephospho-CoA kinase"@en , "3'-dephospho-CoA kinase"@en , "ATP:dephospho-CoA 3'-phosphotransferase"@en , "GO:0004140"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.24"^^xsd:string ; + owl:hasValue "GO:0004140"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8372 \"dephospho-CoA kinase activity\""^^xsd:string ; + owl:hasValue "2.7.1.24"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004140"^^xsd:string ; + owl:hasValue "8372 \"dephospho-CoA kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -307753,11 +307753,11 @@ bo:16939 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MDOB"@en , "E2.7.8.20"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1368"^^xsd:string ; + owl:hasValue "0008960"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008960"^^xsd:string ; + owl:hasValue "COG1368"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -307835,11 +307835,11 @@ bo:21470 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:label "adenosylmethionine--8-amino-7-oxononanoate aminotransferase"@en , "GO:0004015"@en , "DAPA transaminase"@en , "DAPA aminotransferase"@en , "S-adenosyl-L-methionine:8-amino-7-oxononanoate aminotransferase"@en , "adenosyl methionine-8-amino-7-oxononanoate transaminase"@en , "diaminopelargonate synthase"@en , "adenosylmethionine-8-amino-7-oxononanoate transaminase"@en , "adenosylmethionine-8-amino-7-oxononanoate aminotransferase"@en , "7 8-diaminononanoate aminotransferase"@en , "7-keto-8-aminopelargonic acid"@en , "7 8-diaminonanoate transaminase"@en , "7 8-diamino-pelargonic acid aminotransferase"@en , "7-keto-8-aminopelargonic acid aminotransferase"@en , "7 8-diaminononanoate transaminase"@en , "7 8-diaminopelargonic acid aminotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DAPASYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004015"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004015"^^xsd:string ; + owl:hasValue "DAPASYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -308287,11 +308287,11 @@ bo:18597 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "sulphite oxidase"@en , "sulfite:oxygen oxidoreductase"@en , "sulfite oxidase"@en , "GO:0008482"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SULFITE-OXIDASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008482"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008482"^^xsd:string ; + owl:hasValue "PWY-5326"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -308299,7 +308299,7 @@ bo:18597 a owl:NamedIndividual , sybio:KOPR ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5326"^^xsd:string ; + owl:hasValue "SULFITE-OXIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -308437,11 +308437,11 @@ bo:15310 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "YJJG"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008253"^^xsd:string ; + owl:hasValue "COG1011"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1011"^^xsd:string ; + owl:hasValue "0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -308526,6 +308526,17 @@ bo:22262 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22262"@en . +bo:22350 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "L-tyrosine carboxy-lyase (tyramine-forming)"@en , "C00082 <=> C00483 + C00011"@en , "cpd:C00082 => cpd:C00082"@en ; + sybio:accession "RN:R00736"^^xsd:string ; + sybio:catalyzedBy bo:16033 , bo:16039 ; + sybio:catalyzingClass bo:22268 , bo:22324 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11607 ; + tawny:name "22350"@en . + bo:3269 a owl:NamedIndividual , sybio:SigGPromoter , sybio:Promoter ; rdfs:label "ydfS"@en ; sybio:NA "CGAACAATATTTTTGGTATAGATGGATATATTAAGCCAAACAATGATAGCA"^^xsd:string ; @@ -308547,7 +308558,7 @@ bo:3269 a owl:NamedIndividual , sybio:SigGPromoter , sybi rdfs:label "1-oxidoreductase"@en , "glucose 1-dehydrogenase"@en , "GO:0047936"@en , "hexose phosphate dehydrogenase"@en , "D-glucose dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047936"^^xsd:string ; + owl:hasValue "GLUCOSE-1-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -308555,23 +308566,12 @@ bo:3269 a owl:NamedIndividual , sybio:SigGPromoter , sybi owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUCOSE-1-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "GO:0047936"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:22350 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "L-tyrosine carboxy-lyase (tyramine-forming)"@en , "C00082 <=> C00483 + C00011"@en , "cpd:C00082 => cpd:C00082"@en ; - sybio:accession "RN:R00736"^^xsd:string ; - sybio:catalyzedBy bo:16033 , bo:16039 ; - sybio:catalyzingClass bo:22268 , bo:22324 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11607 ; - tawny:name "22350"@en . - bo:3357 a sybio:Promoter , owl:NamedIndividual , sybio:SigKPromoter ; rdfs:label "yfnE"@en ; sybio:NA "GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC"^^xsd:string ; @@ -308717,7 +308717,7 @@ bo:18736 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "ABO"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT6"^^xsd:string ; + owl:hasValue "0004381"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -308725,7 +308725,7 @@ bo:18736 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004381"^^xsd:string ; + owl:hasValue "GT6"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -308831,34 +308831,34 @@ bo:24946 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11724 , bo:11749 ; tawny:name "24946"@en . +bo:4362 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "ybdO_terminator"@en ; + sybio:NA "TTAGGTAAGCTGTTCATGTAGGACAGCTTATTTTTTATGAGAATC"^^xsd:string ; + sybio:annotatedSequence "TTAGG{left}TAAGCTGTTC{/left}ATGTA{right}GGACAGCTTA{/right}TTTTTTATGAGAATC"@en ; + sybio:begin "226245"@en ; + sybio:deltaGo "-15.2"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "226289"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4361 ; + tawny:name "4362"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.;"@en ; rdfs:label "3'-5' exoribonuclease"@en , "GO:0000175"@en , "3'-5'-exoribonuclease"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.13.-"^^xsd:string ; + owl:hasValue "GO:0000175"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000175"^^xsd:string ; + owl:hasValue "3.1.13.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:4362 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "ybdO_terminator"@en ; - sybio:NA "TTAGGTAAGCTGTTCATGTAGGACAGCTTATTTTTTATGAGAATC"^^xsd:string ; - sybio:annotatedSequence "TTAGG{left}TAAGCTGTTC{/left}ATGTA{right}GGACAGCTTA{/right}TTTTTTATGAGAATC"@en ; - sybio:begin "226245"@en ; - sybio:deltaGo "-15.2"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "226289"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4361 ; - tawny:name "4362"@en . - bo:4450 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "nasBCDEF_terminator"@en ; sybio:NA "GCAAGCAGCCCTTTTCCTCAAGGGCTGTTTTATTTATGCACC"^^xsd:string ; @@ -308931,18 +308931,6 @@ bo:22225 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11603 ; tawny:name "22225"@en . - - a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; - rdfs:comment "A protective structure outside the cytoplasmic membrane composed of peptidoglycan, a molecule made up of a glycan (sugar) backbone of repetitively alternating N-acetylglucosamine and N-acetylmuramic acid with short, attached, cross-linked peptide chains containing unusual amino acids; also called murein. An example of this component is found in Escherichia coli."@en ; - rdfs:label "GO:0009274"@en , "peptidoglycan-based cell wall"@en , "murein sacculus"@en , "envelope"@en , "peptidoglycan"@en ; - rdfs:subClassOf , sybio:CellularComponent ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009274"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:19389 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "2.7.1.4"@en ; @@ -308955,6 +308943,18 @@ bo:19389 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19389"@en . + + a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; + rdfs:comment "A protective structure outside the cytoplasmic membrane composed of peptidoglycan, a molecule made up of a glycan (sugar) backbone of repetitively alternating N-acetylglucosamine and N-acetylmuramic acid with short, attached, cross-linked peptide chains containing unusual amino acids; also called murein. An example of this component is found in Escherichia coli."@en ; + rdfs:label "GO:0009274"@en , "peptidoglycan-based cell wall"@en , "murein sacculus"@en , "envelope"@en , "peptidoglycan"@en ; + rdfs:subClassOf , sybio:CellularComponent ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0009274"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:31898 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU39710"@en ; rdfs:label "iolF"@en , "BSU39710"@en , "yxdF"@en ; @@ -309076,16 +309076,6 @@ bo:19653 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19653"@en . -bo:16014 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "diamine oxidase [EC:1.4.3.22]"@en ; - rdfs:label "AOC1"@en , "ABP1"@en ; - sybio:accession "0008131"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16013 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11182"@en ; - tawny:name "16014"@en . - bo:19741 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "proH"@en ; @@ -309124,6 +309114,28 @@ bo:10289 a owl:NamedIndividual , sybio:Protein , bo:276 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10289"@en . +bo:16014 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "diamine oxidase [EC:1.4.3.22]"@en ; + rdfs:label "AOC1"@en , "ABP1"@en ; + sybio:accession "0008131"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16013 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11182"@en ; + tawny:name "16014"@en . + +bo:25687 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.232"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.232"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25687"@en . + bo:10377 a sybio:Protein , bo:1576 , owl:NamedIndividual ; rdfs:comment "putative integral inner membrane protein;BSU28570"@en , "UPF0719 transmembrane protein yshE"@en ; rdfs:label "yshE"@en , "YshE"@en , "BSU28570"@en ; @@ -309140,28 +309152,16 @@ bo:10377 a sybio:Protein , bo:1576 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10377"@en . -bo:25687 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.232"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.232"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25687"@en . - bo:16102 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]"@en ; rdfs:label "HPAI"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018802"^^xsd:string ; + owl:hasValue "COG3836"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3836"^^xsd:string ; + owl:hasValue "0018802"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -309169,6 +309169,16 @@ bo:16102 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K02510"@en ; tawny:name "16102"@en . +bo:25775 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C00010 + C00002 + C06670 <=> C00013 + C06671 + C00020"@en , "cpd:C06670 <=> cpd:C06670"@en , "CoA ligase"@en , "2,4-dichlorobenzoate"@en ; + sybio:accession "RN:R05451"^^xsd:string ; + sybio:catalyzingClass bo:21896 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25775"@en . + bo:10465 a sybio:Protein , owl:NamedIndividual , bo:1694 ; rdfs:comment "Uncharacterized transporter yutK;"@en , "putative Na+(H+)/nucleoside cotransporter;BSU32180"@en ; rdfs:label "BSU32180"@en , "yutK"@en , "YutK"@en ; @@ -309188,16 +309198,6 @@ bo:10465 a sybio:Protein , owl:NamedIndividual , bo:1694 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10465"@en . -bo:25775 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C00010 + C00002 + C06670 <=> C00013 + C06671 + C00020"@en , "cpd:C06670 <=> cpd:C06670"@en , "CoA ligase"@en , "2,4-dichlorobenzoate"@en ; - sybio:accession "RN:R05451"^^xsd:string ; - sybio:catalyzingClass bo:21896 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25775"@en . - bo:5191 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ypqP_terminator"@en ; sybio:NA "AAAAACAAGCCTGTCTATCCATTAGGCAGGCCTGTTTTTAACAGTTTAT"^^xsd:string ; @@ -309208,6 +309208,15 @@ bo:5191 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:5190 ; tawny:name "5191"@en . +bo:25863 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "spontaneous(following EC3.2.1.105 or R03820+R05844+R05845+R05824reaction)Ref:1. J Biol Chem. 2000;275(5):3051-3056 - reversible"@en ; + rdfs:label "cpd:C03677 <=> cpd:C03677"@en , "C03677 <=> C11680"@en ; + sybio:accession "RN:R05846"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25863"@en . + bo:10553 a sybio:Protein , owl:NamedIndividual , bo:602 ; rdfs:comment "BSU36280;putative ATP-binding SNF2 helicase or protein kinase"@en , "Uncharacterized ATP-dependent helicase ywqA"@en ; rdfs:label "YwqA"@en , "BSU36280"@en , "ywqA"@en ; @@ -309226,15 +309235,6 @@ bo:10553 a sybio:Protein , owl:NamedIndividual , bo:602 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10553"@en . -bo:25863 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "spontaneous(following EC3.2.1.105 or R03820+R05844+R05845+R05824reaction)Ref:1. J Biol Chem. 2000;275(5):3051-3056 - reversible"@en ; - rdfs:label "cpd:C03677 <=> cpd:C03677"@en , "C03677 <=> C11680"@en ; - sybio:accession "RN:R05846"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25863"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end."@en ; @@ -309490,26 +309490,6 @@ bo:11294 a bo:343 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11294"@en . -bo:11382 a owl:NamedIndividual , sybio:Protein , bo:545 , bo:405 ; - rdfs:comment "BSU04060;putative branched chain amino acids transporter"@en , "Uncharacterized membrane protein ycsG"@en ; - rdfs:label "ycsG"@en , "YcsG"@en , "BSU04060"@en , "YcsH"@en ; - sybio:AA "MEQQKKTAGKKAGSWSLLMGAAFLMATSAIGPGFLTQTATFTNTLAASFGFVILISIILDIFAQTNVWRIIAVSGKRGQEIANMVLPGLGYFIAILVVLGGLAFNIGNIGGAGLGLQVLFGITPETGALISAVIAILIFVIKEAGKAMDRFTQIAGFVMIILTVYVAATTAPPVGQAVANTFVPEHISIFAIVTLVGGTVGGYITFAGGHRLLDAGIKGKESIPQVTKSSVVGILITSVMRIALFLAVLGVVSKGLHIDESNPAASVFKLAAGNVGYKIFGLIMWSAAITSVIGAAYTSVSFFKTFSPKIEKNSRGIIIGFIVVSTLAFVTIGQPAKILVLVGSLNGLILPIALGTLLVAAYKKNIVGDYKHPLWLTSTGALVVIVMAVMGIYTLCTQLPQLWS"@en ; - sybio:accession "P42964"^^xsd:string , "BSU04060"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30979 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "42132.435"^^xsd:string ; - sybio:pI "9.817101"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:relatedTo bo:11384 , bo:6845 , bo:11383 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11382"@en . - bo:30182 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24930"@en ; rdfs:label "yqzD"@en , "BSU24930"@en ; @@ -309553,25 +309533,25 @@ bo:26692 a sybio:Protein , owl:NamedIndividual , bo:430 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26692"@en . -bo:11470 a owl:NamedIndividual , bo:450 , sybio:Protein ; - rdfs:comment "Fatty acid metabolism regulator protein"@en , "transcriptional regulator of fatty acids degradation (TetR/AcrR family);BSU28550"@en ; - rdfs:label "FadR"@en , "BSU28550"@en , "fadR"@en , "YsiA"@en ; - sybio:AA "LKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGIHNK"@en ; - sybio:accession "P94548"^^xsd:string , "BSU28550"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:30753 ; +bo:11382 a owl:NamedIndividual , sybio:Protein , bo:545 , bo:405 ; + rdfs:comment "BSU04060;putative branched chain amino acids transporter"@en , "Uncharacterized membrane protein ycsG"@en ; + rdfs:label "ycsG"@en , "YcsG"@en , "BSU04060"@en , "YcsH"@en ; + sybio:AA "MEQQKKTAGKKAGSWSLLMGAAFLMATSAIGPGFLTQTATFTNTLAASFGFVILISIILDIFAQTNVWRIIAVSGKRGQEIANMVLPGLGYFIAILVVLGGLAFNIGNIGGAGLGLQVLFGITPETGALISAVIAILIFVIKEAGKAMDRFTQIAGFVMIILTVYVAATTAPPVGQAVANTFVPEHISIFAIVTLVGGTVGGYITFAGGHRLLDAGIKGKESIPQVTKSSVVGILITSVMRIALFLAVLGVVSKGLHIDESNPAASVFKLAAGNVGYKIFGLIMWSAAITSVIGAAYTSVSFFKTFSPKIEKNSRGIIIGFIVVSTLAFVTIGQPAKILVLVGSLNGLILPIALGTLLVAAYKKNIVGDYKHPLWLTSTGALVVIVMAVMGIYTLCTQLPQLWS"@en ; + sybio:accession "P42964"^^xsd:string , "BSU04060"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30979 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "21959.555"^^xsd:string ; - sybio:pI "6.144173"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; + sybio:hasFunction ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "42132.435"^^xsd:string ; + sybio:pI "9.817101"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:relatedTo bo:11384 , bo:6845 , bo:11383 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11470"@en ; - owl:sameAs bo:6541 . + tawny:name "11382"@en . bo:30270 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU26500"@en ; @@ -309620,6 +309600,26 @@ bo:26780 a bo:1672 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26780"@en . +bo:11470 a owl:NamedIndividual , bo:450 , sybio:Protein ; + rdfs:comment "Fatty acid metabolism regulator protein"@en , "transcriptional regulator of fatty acids degradation (TetR/AcrR family);BSU28550"@en ; + rdfs:label "FadR"@en , "BSU28550"@en , "fadR"@en , "YsiA"@en ; + sybio:AA "LKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGIHNK"@en ; + sybio:accession "P94548"^^xsd:string , "BSU28550"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:30753 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "21959.555"^^xsd:string ; + sybio:pI "6.144173"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11470"@en ; + owl:sameAs bo:6541 . + a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; rdfs:comment "An enzyme complex that catalyzes the formation of nitrate from nitrite with the concomitant reduction of an acceptor."@en ; @@ -309702,11 +309702,11 @@ bo:19616 a owl:NamedIndividual , sybio:Enzyme ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003864"^^xsd:string ; + owl:hasValue "2.1.2.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.11"^^xsd:string ; + owl:hasValue "GO:0003864"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -309728,23 +309728,23 @@ bo:19704 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "NAD synthase"@en , "desamidonicotinamide adenine dinucleotide amidotransferase"@en , "synthetase"@en , "NAD+ synthase"@en , "NAD+ synthase (glutamine-hydrolyzing)"@en , "NAD synthetase"@en , "deamido-NAD+:L-glutamine amido-ligase"@en , "NAD+ synthetase"@en , "GO:0003952"@en , "DPN synthetase"@en , "nicotinamide adenine dinucleotide synthetase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12600 \"NAD+ synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; + owl:hasValue "NAD-SYNTH-GLN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003952"^^xsd:string ; + owl:hasValue "NAD+_synthase_(glutamine-hydrolysing)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.5.1"^^xsd:string ; + owl:hasValue "GO:0003952"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAD-SYNTH-GLN-RXN"^^xsd:string ; + owl:hasValue "12600 \"NAD+ synthase (glutamine-hydrolyzing) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAD+_synthase_(glutamine-hydrolysing)"^^xsd:string ; + owl:hasValue "6.3.5.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -310077,6 +310077,25 @@ bo:30057 a sybio:CDS , owl:NamedIndividual ; "29.0"@en ; tawny:name "30057"@en . +bo:26567 a owl:NamedIndividual , sybio:Protein , bo:1052 , bo:1248 ; + rdfs:comment "2-isopropylmalate synthase;derived protein"@en , "2-isopropylmalate synthase;BSU28280"@en ; + rdfs:label "LeuA"@en , "leuA"@en , "BSU28280"@en ; + sybio:AA "LRKINFFDTTLRDGEQSPGVNLNTQEKLAIAKQLERLGADIIEAGFPASSRGDFLAVQEIARTIKNCSVTGLARCVKGDIDAAWEALKDGAQPRIHVFIATSDIHLKHKLKMTREQVIERAVGMVKYAKERFPIVQWSAEDACRTELPFLAEIVEKVIDAGASVINLPDTVGYLAPAEYGNIFKYMKENVPNIHKAKLSAHCHDDLGMAVANSLAAIENGADQIECAVNGIGERAGNAALEEIAVALHTRKDFYQVETGITLNEIKRTSDLVSKLTGMAVPRNKAVVGDNAFAHESGIHQDGFLKEKSTYEIISPELVGVTADALVLGKHSGRHAFKDRLTALGFQFDSEEINKFFTMFKELTEKKKEITDEDLVSLILEEKVTDRKIGYEFLSLQVHYGTSQVPTATLSLKNQENAQLIQEAATGAGSVEAIYNTLERCIDKDVELLDYRIQSNRKGEDAFAQVYVRVLVNGKESAGRGIAQDVLEASAKAYLNAVNRQLVFQSNMSGLKNHTAVGS"@en ; + sybio:accession "936316"^^xsd:string , "P94565"^^xsd:string , "16079880"^^xsd:string , "BSU28280"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32461 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "56891.365"^^xsd:string ; + sybio:pI "5.729958"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26618 , bo:26568 , bo:26605 , bo:26570 , bo:26783 , bo:26835 , bo:26569 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26567"@en . + bo:11257 a bo:284 , bo:283 , owl:NamedIndividual , bo:282 , bo:174 , sybio:Protein ; rdfs:comment "Negative regulator of genetic competence clpC/mecB"@en , "class III stress response-related ATPase, AAA+ superfamily;BSU00860"@en ; rdfs:label "ClpC"@en , "clpC"@en , "BSU00860"@en ; @@ -310097,25 +310116,6 @@ bo:11257 a bo:284 , bo:283 , owl:NamedIndividual , bo:282 sybio:taxId "[224308, 1423]"@en ; tawny:name "11257"@en . -bo:26567 a owl:NamedIndividual , sybio:Protein , bo:1052 , bo:1248 ; - rdfs:comment "2-isopropylmalate synthase;derived protein"@en , "2-isopropylmalate synthase;BSU28280"@en ; - rdfs:label "LeuA"@en , "leuA"@en , "BSU28280"@en ; - sybio:AA "LRKINFFDTTLRDGEQSPGVNLNTQEKLAIAKQLERLGADIIEAGFPASSRGDFLAVQEIARTIKNCSVTGLARCVKGDIDAAWEALKDGAQPRIHVFIATSDIHLKHKLKMTREQVIERAVGMVKYAKERFPIVQWSAEDACRTELPFLAEIVEKVIDAGASVINLPDTVGYLAPAEYGNIFKYMKENVPNIHKAKLSAHCHDDLGMAVANSLAAIENGADQIECAVNGIGERAGNAALEEIAVALHTRKDFYQVETGITLNEIKRTSDLVSKLTGMAVPRNKAVVGDNAFAHESGIHQDGFLKEKSTYEIISPELVGVTADALVLGKHSGRHAFKDRLTALGFQFDSEEINKFFTMFKELTEKKKEITDEDLVSLILEEKVTDRKIGYEFLSLQVHYGTSQVPTATLSLKNQENAQLIQEAATGAGSVEAIYNTLERCIDKDVELLDYRIQSNRKGEDAFAQVYVRVLVNGKESAGRGIAQDVLEASAKAYLNAVNRQLVFQSNMSGLKNHTAVGS"@en ; - sybio:accession "936316"^^xsd:string , "P94565"^^xsd:string , "16079880"^^xsd:string , "BSU28280"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32461 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "56891.365"^^xsd:string ; - sybio:pI "5.729958"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26618 , bo:26568 , bo:26605 , bo:26570 , bo:26783 , bo:26835 , bo:26569 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26567"@en . - bo:30145 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU23320;"@en ; rdfs:label "BSU23320"@en , "ypzC"@en ; @@ -310552,7 +310552,7 @@ bo:32829 a sybio:CDS , owl:NamedIndividual ; rdfs:label "poly-beta-glucosaminidase"@en , "1 4-beta-poly-N-acetylglucosaminidase"@en , "GO:0004568"@en , "chitodextrinase"@en , "poly[1 glycanohydrolase"@en , "beta-1 4-poly-N-acetyl glucosamidinase"@en , "chitinase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.14-RXN"^^xsd:string ; + owl:hasValue "GO:0004568"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -310560,7 +310560,7 @@ bo:32829 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004568"^^xsd:string ; + owl:hasValue "3.2.1.14-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -310602,15 +310602,15 @@ bo:32917 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004832"^^xsd:string ; + owl:hasValue "15132 \"valine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "VALINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004832"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15132 \"valine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "VALINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -311058,22 +311058,22 @@ bo:1490 a owl:Class ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate."@en ; - rdfs:label "bisphosphoglyceromutase"@en , "PGM"@en , "diphosphoglycomutase"@en , "phosphoglycerate phosphomutase"@en , "PGAM"@en , "MPGM"@en , "PGA mutase"@en , "monophosphoglyceromutase"@en , "phosphoglyceromutase"@en , "monophosphoglycerate mutase"@en , "GriP mutase"@en , "phosphoglycerate mutase"@en , "D-phosphoglycerate 2 3-phosphomutase"@en , "GO:0004619"@en ; + rdfs:label "PGM"@en , "diphosphoglycomutase"@en , "phosphoglycerate phosphomutase"@en , "PGAM"@en , "MPGM"@en , "PGA mutase"@en , "monophosphoglyceromutase"@en , "phosphoglyceromutase"@en , "monophosphoglycerate mutase"@en , "GriP mutase"@en , "phosphoglycerate mutase"@en , "D-phosphoglycerate 2 3-phosphomutase"@en , "GO:0004619"@en , "bisphosphoglyceromutase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3PGAREARR-RXN"^^xsd:string ; + owl:hasValue "5.4.2.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13285 \"phosphoglycerate mutase activity\""^^xsd:string ; + owl:hasValue "GO:0004619"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.2.1"^^xsd:string ; + owl:hasValue "3PGAREARR-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004619"^^xsd:string ; + owl:hasValue "13285 \"phosphoglycerate mutase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -311579,27 +311579,27 @@ bo:1541 a owl:Class ; rdfs:label "'de novo' purine biosynthesis"@en , "'de novo' IMP biosynthetic process"@en , "'de novo' IMP biosynthesis"@en , "'de novo' IMP synthesis"@en , "'de novo' IMP anabolism"@en , "GO:0006189"@en , "'de novo' purine biosynthetic process"@en , "'de novo' IMP formation"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531140 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "568386 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552189 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "73817 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598106 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "592484 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542230 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "597305 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557774 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "526268 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568386 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "448594 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -311607,63 +311607,63 @@ bo:1541 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592484 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "557774 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487434 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "581588 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517393 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "552189 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006189"^^xsd:string ; + owl:hasValue "507391 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448594 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "517393 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599655 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "531140 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600586 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "469723 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73817 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "547580 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526268 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "542230 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581588 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "536512 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547580 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "599655 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469723 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "598106 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597305 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "487434 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507391 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "600586 \"De novo synthesis of IMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536512 \"De novo synthesis of IMP\""^^xsd:string ; + owl:hasValue "GO:0006189"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -311712,16 +311712,6 @@ bo:16568 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09459"@en ; tawny:name "16568"@en . -bo:16656 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "gamma-glutamylcyclotransferase [EC:2.3.2.4]"@en ; - rdfs:label "GGCT"@en ; - sybio:accession "0003839"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16655 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00682"@en ; - tawny:name "16656"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid."@en ; @@ -311734,6 +311724,16 @@ bo:16656 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16656 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "gamma-glutamylcyclotransferase [EC:2.3.2.4]"@en ; + rdfs:label "GGCT"@en ; + sybio:accession "0003839"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16655 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00682"@en ; + tawny:name "16656"@en . + bo:28239 a sybio:RBS , owl:NamedIndividual ; rdfs:label "ytfI_RBS"@en ; sybio:NA "AGGAAGTGAAGAAT"^^xsd:string ; @@ -312041,17 +312041,6 @@ bo:17573 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01034+K01035"@en ; tawny:name "17573"@en . -bo:684 a owl:Class ; - rdfs:label "COG0046"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0046"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "684"@en . - bo:29156 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU00290"@en ; rdfs:label "yaaQ"@en , "BSU00290"@en ; @@ -312088,6 +312077,17 @@ bo:1416 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1416"@en . +bo:684 a owl:Class ; + rdfs:label "COG0046"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0046"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "684"@en . + bo:17661 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5]"@en ; rdfs:label "LSC1"@en ; @@ -312359,6 +312359,21 @@ bo:22829 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11618 ; tawny:name "22829"@en . +bo:2245 a bo:1301 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "BSU20870;putative nucleotide binding protein; phage SPbeta"@en ; + rdfs:label "YopJ"@en , "BSU20870"@en ; + sybio:AA "MKNTFLYFRWEDLHGEIGVDSFNLLRASYSNLSEQQLVELIKELISIEREDIAAKFDIHLSENAPVFDERQHVVYKGVAGDMNYKDMLLSLVTALDLTNTLDHVQNILSLAKCLRSFDREIFARFAKDIAEEVYYSLK"@en ; + sybio:accession "BSU20870"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:encodedBy bo:30019 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "16022.675"^^xsd:string ; + sybio:pI "4.927162"^^xsd:string ; + sybio:productType "pf : putative factor"^^xsd:string ; + sybio:taxId "224308"@en ; + tawny:name "2245"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer."@en ; @@ -312375,21 +312390,6 @@ bo:22829 a sybio:Reaction , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:2245 a bo:1301 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "BSU20870;putative nucleotide binding protein; phage SPbeta"@en ; - rdfs:label "YopJ"@en , "BSU20870"@en ; - sybio:AA "MKNTFLYFRWEDLHGEIGVDSFNLLRASYSNLSEQQLVELIKELISIEREDIAAKFDIHLSENAPVFDERQHVVYKGVAGDMNYKDMLLSLVTALDLTNTLDHVQNILSLAKCLRSFDREIFARFAKDIAEEVYYSLK"@en ; - sybio:accession "BSU20870"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:encodedBy bo:30019 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "16022.675"^^xsd:string ; - sybio:pI "4.927162"^^xsd:string ; - sybio:productType "pf : putative factor"^^xsd:string ; - sybio:taxId "224308"@en ; - tawny:name "2245"@en . - bo:22917 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "Propanoyl-CoA"@en , "(acceptor) 2,3-oxidoreductase"@en , "cpd:C00894 <=> cpd:C00894"@en , "C00100 + C00016 <=> C01352 + C00894"@en ; @@ -312509,11 +312509,11 @@ bo:17536 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.1.3.18"@en , "GPH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008967"^^xsd:string ; + owl:hasValue "COG0546"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0546"^^xsd:string ; + owl:hasValue "0008967"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -313273,6 +313273,17 @@ bo:10094 a bo:931 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10094"@en . +bo:25492 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label "C00473 + C00003 <=> C00376 + C00004 + C00080"@en , "Retinol"@en , " => "@en , "NAD+ oxidoreductase"@en ; + sybio:accession "RN:R02124"^^xsd:string ; + sybio:catalyzedBy bo:19933 , bo:19736 ; + sybio:catalyzingClass bo:19737 , bo:25493 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25492"@en . + bo:10182 a bo:1270 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Putative L-amino-acid oxidase yobN"@en , "BSU19020;putative amine oxidase"@en ; rdfs:label "BSU19020"@en , "YobN"@en , "yobN"@en ; @@ -313292,17 +313303,6 @@ bo:10182 a bo:1270 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10182"@en . -bo:25492 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label "C00473 + C00003 <=> C00376 + C00004 + C00080"@en , "Retinol"@en , " => "@en , "NAD+ oxidoreductase"@en ; - sybio:accession "RN:R02124"^^xsd:string ; - sybio:catalyzedBy bo:19933 , bo:19736 ; - sybio:catalyzingClass bo:19737 , bo:25493 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25492"@en . - bo:6499 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yvcRS_terminator"@en ; sybio:NA "TATGTAATATGAAATCCGGTCTGTTATCAGACCGGATTTTTGATTTATTGA"^^xsd:string ; @@ -313315,6 +313315,18 @@ bo:6499 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:6498 ; tawny:name "6499"@en . +bo:25580 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.163"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.163"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25580"@en . + bo:10270 a sybio:Protein , owl:NamedIndividual , bo:1376 ; rdfs:comment "Uncharacterized protein ypaA"@en , "BSU23050;FMN permease"@en ; rdfs:label "BSU23050"@en , "FmnP"@en , "ypaA"@en , "YpaA"@en ; @@ -313332,18 +313344,6 @@ bo:10270 a sybio:Protein , owl:NamedIndividual , bo:1376 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10270"@en . -bo:25580 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.163"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.163"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25580"@en . - bo:6587 a owl:NamedIndividual , sybio:TF ; rdfs:comment "two-component response regulator [YxdK]"@en ; rdfs:label "YxdJ"@en , "BSU39660"@en ; @@ -313395,11 +313395,11 @@ bo:18328 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.13.11.32"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2070"^^xsd:string ; + owl:hasValue "0018580"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018580"^^xsd:string ; + owl:hasValue "COG2070"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -313848,6 +313848,18 @@ bo:31930 a owl:NamedIndividual , sybio:CDS ; "23.0"@en ; tawny:name "31930"@en . +bo:25367 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.7.7.38"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.7.7.38"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25367"@en . + bo:10057 a sybio:Protein , bo:606 , bo:752 , owl:NamedIndividual ; rdfs:comment "BSU07850;general stress protein 18"@en , "General stress protein 18"@en ; rdfs:label "YfkM"@en , "BSU07850"@en , "yfkM"@en ; @@ -313865,18 +313877,6 @@ bo:10057 a sybio:Protein , bo:606 , bo:752 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "10057"@en . -bo:25367 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.7.7.38"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.38"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25367"@en . - bo:25455 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "multi-step reactionfollowing after R02068 - reversible"@en ; rdfs:label "C06089 <=> C06090 + C00013"@en , "ent-Copalyl-diphosphate diphosphate-lyase"@en , "cpd:C06089 <=> cpd:C06089"@en ; @@ -314177,25 +314177,6 @@ bo:26284 a owl:NamedIndividual , bo:939 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26284"@en . -bo:11062 a sybio:Protein , bo:364 , owl:NamedIndividual ; - rdfs:comment "putative efflux transporter;BSU35210"@en , "Uncharacterized MFS-type transporter yvkA"@en ; - rdfs:label "BSU35210"@en , "YvkA"@en , "yvkA"@en ; - sybio:AA "MSSRKEWALIVSLLLGAILVPINSTMIAVALSSISHTYNESIASITWVVTVYLIVMAVTQPIAGKLGDMYGNKTMYLWGVGLFLIASLGCALSPSLLLLIVFRALQAVGGALLTPNSIAIIRHVVSEKRLPKVFGFFGLGAGLGAALGPFIGSILIDSFSWHSIFWVNIPFLAIALFTALTMFPQYKENKSDAPLDIIGSLLLAGSIVSIILLTKNEAPWGYTVYSVLILLFVPLFFRREKRTQHPIIDFALFKSSTFTNANLSVLLSNLMMYAVLLIMPLFMTNQFGLNTSNSGMALSVFSIFMSASNWVGAQLHHKWGAKKIIFLSFAMMAGANLLFLLLSSSHSVLFLMLSLILGGLASGVGLTSMQVSSLATVDPGMSGVASGIFSTFRYFGSIISSALIGLISGYHTLFMILFAVSIIGVFVSLGIKSDETARIEKNSA"@en ; - sybio:accession "O34502"^^xsd:string , "BSU35210"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30570 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "47795.915"^^xsd:string ; - sybio:pI "9.604759"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11062"@en . - bo:26372 a sybio:Protein , owl:NamedIndividual , bo:510 ; rdfs:comment "Orotidine 5'-phosphate decarboxylase;derived protein"@en , "BSU15550;orotidine 5'-phosphate decarboxylase"@en ; rdfs:label "pyrF"@en , "PyrF"@en , "BSU15550"@en ; @@ -314215,6 +314196,25 @@ bo:26372 a sybio:Protein , owl:NamedIndividual , bo:510 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26372"@en . +bo:11062 a sybio:Protein , bo:364 , owl:NamedIndividual ; + rdfs:comment "putative efflux transporter;BSU35210"@en , "Uncharacterized MFS-type transporter yvkA"@en ; + rdfs:label "BSU35210"@en , "YvkA"@en , "yvkA"@en ; + sybio:AA "MSSRKEWALIVSLLLGAILVPINSTMIAVALSSISHTYNESIASITWVVTVYLIVMAVTQPIAGKLGDMYGNKTMYLWGVGLFLIASLGCALSPSLLLLIVFRALQAVGGALLTPNSIAIIRHVVSEKRLPKVFGFFGLGAGLGAALGPFIGSILIDSFSWHSIFWVNIPFLAIALFTALTMFPQYKENKSDAPLDIIGSLLLAGSIVSIILLTKNEAPWGYTVYSVLILLFVPLFFRREKRTQHPIIDFALFKSSTFTNANLSVLLSNLMMYAVLLIMPLFMTNQFGLNTSNSGMALSVFSIFMSASNWVGAQLHHKWGAKKIIFLSFAMMAGANLLFLLLSSSHSVLFLMLSLILGGLASGVGLTSMQVSSLATVDPGMSGVASGIFSTFRYFGSIISSALIGLISGYHTLFMILFAVSIIGVFVSLGIKSDETARIEKNSA"@en ; + sybio:accession "O34502"^^xsd:string , "BSU35210"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30570 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "47795.915"^^xsd:string ; + sybio:pI "9.604759"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11062"@en . + bo:7379 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Gamma-glutamyltranspeptidase light subunit"@en ; rdfs:label "Q9R5M9"@en ; @@ -314225,6 +314225,25 @@ bo:7379 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "1423"@en ; tawny:name "7379"@en . +bo:26460 a sybio:Protein , bo:1359 , owl:NamedIndividual ; + rdfs:comment "derived protein;Indole-3-glycerol-phosphate synthase;Indole-3-glycerol phosphate synthase"@en , "BSU22660;indol-3-glycerol phosphate synthase"@en ; + rdfs:label "TrpC"@en , "trpC"@en , "BSU22660"@en ; + sybio:AA "MLEKIIKQKKEEVKTLVLPVEQPFEKRSFKEALASPNRFIGLIAEVKKASPSKGLIKEDFVPVQIAKDYEAAKADAISVLTDTPFFQGENSYLSDVKRAVSIPVLRKDFIDSLQVEESRRIGADAILLIGEVLDPLHLHELYLEAGEKGMDVLVEVHDASTLEQILKVFTPDILGVNNRNLKTFETSVKQTEQIASLVPKESLLVSESGIGSLEHLTFVNEHGARAVLIGESLMRQTSQRKAIHALFRE"@en ; + sybio:accession "P03964"^^xsd:string , "A3F3P3"^^xsd:string , "A3F3G7"^^xsd:string , "BSU22660"^^xsd:string , "255767488"^^xsd:string , "A3F3R2"^^xsd:string , "A3F3M4"^^xsd:string , "939004"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32387 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "27739.94"^^xsd:string ; + sybio:pI "5.639168"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26967 , bo:26462 , bo:26461 ; + sybio:taxId "224308"@en ; + tawny:name "26460"@en . + bo:11150 a bo:1054 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Quinol oxidase subunit 2"@en , "BSU38170;cytochrome aa3-600 quinol oxidase (subunit II);"@en ; rdfs:label "Ipa-37d"@en , "QoxA"@en , "BSU38170"@en , "qoxA"@en ; @@ -314245,25 +314264,6 @@ bo:11150 a bo:1054 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11150"@en . -bo:26460 a sybio:Protein , bo:1359 , owl:NamedIndividual ; - rdfs:comment "derived protein;Indole-3-glycerol-phosphate synthase;Indole-3-glycerol phosphate synthase"@en , "BSU22660;indol-3-glycerol phosphate synthase"@en ; - rdfs:label "TrpC"@en , "trpC"@en , "BSU22660"@en ; - sybio:AA "MLEKIIKQKKEEVKTLVLPVEQPFEKRSFKEALASPNRFIGLIAEVKKASPSKGLIKEDFVPVQIAKDYEAAKADAISVLTDTPFFQGENSYLSDVKRAVSIPVLRKDFIDSLQVEESRRIGADAILLIGEVLDPLHLHELYLEAGEKGMDVLVEVHDASTLEQILKVFTPDILGVNNRNLKTFETSVKQTEQIASLVPKESLLVSESGIGSLEHLTFVNEHGARAVLIGESLMRQTSQRKAIHALFRE"@en ; - sybio:accession "P03964"^^xsd:string , "A3F3P3"^^xsd:string , "A3F3G7"^^xsd:string , "BSU22660"^^xsd:string , "255767488"^^xsd:string , "A3F3R2"^^xsd:string , "A3F3M4"^^xsd:string , "939004"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32387 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "27739.94"^^xsd:string ; - sybio:pI "5.639168"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26967 , bo:26462 , bo:26461 ; - sybio:taxId "224308"@en ; - tawny:name "26460"@en . - bo:31629 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU31630"@en ; rdfs:label "yufD"@en , "BSU31630"@en , "mrpD"@en ; @@ -314448,6 +314448,17 @@ bo:32458 a sybio:CDS , owl:NamedIndividual ; "19.0"@en ; tawny:name "32458"@en . +bo:13658 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C27H33N9O15P2"@en ; + rdfs:label "C27H33N9O15P2"@en , "FAD"@en , "Flavin adenine dinucleotide"@en ; + sybio:accession "B04619"^^xsd:string , "16238"^^xsd:string , "146-14-5"^^xsd:string , "3318"^^xsd:string , "C00016"^^xsd:string ; + sybio:consumedBy bo:24535 , bo:24531 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24535 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00016"@en ; + tawny:name "13658"@en . + bo:28968 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU30080"@en ; rdfs:label "BSU30080"@en , "cse60"@en , "yteV"@en ; @@ -314475,17 +314486,6 @@ bo:28968 a sybio:CDS , owl:NamedIndividual ; "0.0"@en ; tawny:name "28968"@en . -bo:13658 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C27H33N9O15P2"@en ; - rdfs:label "C27H33N9O15P2"@en , "FAD"@en , "Flavin adenine dinucleotide"@en ; - sybio:accession "B04619"^^xsd:string , "16238"^^xsd:string , "146-14-5"^^xsd:string , "3318"^^xsd:string , "C00016"^^xsd:string ; - sybio:consumedBy bo:24535 , bo:24531 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24535 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00016"@en ; - tawny:name "13658"@en . - bo:32546 a sybio:ResponseRegulatorEncodingCDS , sybio:CDS , owl:NamedIndividual ; rdfs:comment "two-component response regulator"@en , "BSU23120;;;;"@en ; rdfs:label "ypxD"@en , "resD"@en , "BSU23120"@en ; @@ -315527,11 +315527,11 @@ bo:21842 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "glycolate oxidase"@en , "GO:0008891"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008891"^^xsd:string ; + owl:hasValue "26481 \"glycolate oxidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "26481 \"glycolate oxidase activity\""^^xsd:string ; + owl:hasValue "GO:0008891"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -315742,16 +315742,6 @@ bo:9139 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9139"@en . -bo:22495 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "see R02613 (1.4.3.21) - reversible"@en ; - rdfs:label "C05332 + C00001 + C00028 <=> C00601 + C00014 + C00030"@en , "cpd:C05332 <=> cpd:C05332"@en , "(acceptor) oxidoreductase (deaminating)"@en , "Phenethylamine"@en ; - sybio:accession "RN:R02612"^^xsd:string ; - sybio:catalyzingClass bo:22396 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11610 ; - tawny:name "22495"@en . - bo:28220 a owl:NamedIndividual , sybio:RBS ; rdfs:label "nucB_RBS"@en ; sybio:NA "GGTATGGGGGGATGGGG"^^xsd:string ; @@ -315762,6 +315752,16 @@ bo:28220 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31815 ; tawny:name "28220"@en . +bo:22495 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "see R02613 (1.4.3.21) - reversible"@en ; + rdfs:label "C05332 + C00001 + C00028 <=> C00601 + C00014 + C00030"@en , "cpd:C05332 <=> cpd:C05332"@en , "(acceptor) oxidoreductase (deaminating)"@en , "Phenethylamine"@en ; + sybio:accession "RN:R02612"^^xsd:string ; + sybio:catalyzingClass bo:22396 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11610 ; + tawny:name "22495"@en . + bo:9227 a bo:373 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Fe(3+)-citrate-binding protein yfmC"@en , "iron-dicitrate ABC transporter (binding lipoprotein);BSU07520"@en ; rdfs:label "BSU07520"@en , "yfmC"@en , "YfmC"@en ; @@ -315928,15 +315928,15 @@ bo:21629 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "2-deoxy-D-gluconate 3-dehydrogenase"@en , "2-deoxygluconate dehydrogenase"@en , "2-keto-3-deoxygluconate oxidoreductase"@en , "2-deoxy-D-gluconate:NAD+ 3-oxidoreductase"@en , "GO:0008678"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.125"^^xsd:string ; + owl:hasValue "KDUD-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "KDUD-RXN"^^xsd:string ; + owl:hasValue "GO:0008678"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008678"^^xsd:string ; + owl:hasValue "1.1.1.125"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -315984,11 +315984,11 @@ bo:17290 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "GO:0008766"@en , "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UDP-NACMURALGLDAPAALIG-RXN"^^xsd:string ; + owl:hasValue "6.3.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.-"^^xsd:string ; + owl:hasValue "UDP-NACMURALGLDAPAALIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -316048,7 +316048,7 @@ bo:1221 a owl:Class ; rdfs:label "nitrite reductase"@en , "NADH-nitrite oxidoreductase"@en , "NADPH-nitrite reductase"@en , "GO:0008942"@en , "assimilatory nitrite reductase"@en , "nitrite reductase [NAD(P)H]"@en , "oxidoreductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NITRITREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0008942"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -316056,7 +316056,7 @@ bo:1221 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008942"^^xsd:string ; + owl:hasValue "NITRITREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -316089,16 +316089,6 @@ bo:15506 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00314"@en ; tawny:name "15506"@en . -bo:16248 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "3-oxoadipate enol-lactonase [EC:3.1.1.24]"@en ; - rdfs:label "PCAD"@en , "E3.1.1.24"@en ; - sybio:accession "COG0596"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16247 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01055"@en ; - tawny:name "16248"@en . - bo:4595 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ydjL_terminator"@en ; sybio:NA "AAAAAGAATCCGCACTCGGGTGCGGATTCTTTTTTAAATTATCC"^^xsd:string ; @@ -316111,6 +316101,16 @@ bo:4595 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4594 ; tawny:name "4595"@en . +bo:16248 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "3-oxoadipate enol-lactonase [EC:3.1.1.24]"@en ; + rdfs:label "PCAD"@en , "E3.1.1.24"@en ; + sybio:accession "COG0596"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16247 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01055"@en ; + tawny:name "16248"@en . + bo:4683 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yfkED"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -316119,15 +316119,6 @@ bo:4683 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yfkE,yfkD"@en ; tawny:name "4683"@en . -bo:16336 a owl:NamedIndividual , sybio:KOEN , owl:Class ; - rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; - rdfs:label "YUCCA"@en ; - rdfs:subClassOf sybio:KOEN ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; - tawny:name "16336"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate moiety at either the 3' or 5'-hydroxyl group of its glycose moiety."@en ; @@ -316140,15 +316131,14 @@ bo:16336 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16424 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovO"@en ; - rdfs:label "NOVO"@en ; - sybio:accession "Q9L9F3"^^xsd:string ; +bo:16336 a owl:NamedIndividual , sybio:KOEN , owl:Class ; + rdfs:comment "YUCCA family monooxygenase [EC:1.14.13.-]"@en ; + rdfs:label "YUCCA"@en ; + rdfs:subClassOf sybio:KOEN ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16425 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; - tawny:name "16424"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11816"@en ; + tawny:name "16336"@en . bo:4771 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "senS_terminator2"@en ; @@ -316162,6 +316152,16 @@ bo:4771 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4769 ; tawny:name "4771"@en . +bo:16424 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovO"@en ; + rdfs:label "NOVO"@en ; + sybio:accession "Q9L9F3"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16425 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; + tawny:name "16424"@en . + bo:28007 a sybio:RBS , owl:NamedIndividual ; rdfs:label "cwlD_RBS"@en ; sybio:NA "CGGGAGGGGAAGGG"^^xsd:string ; @@ -316538,47 +316538,36 @@ bo:23199 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11646 ; tawny:name "23199"@en . -bo:452 a owl:Class ; - rdfs:label "COG1075"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1075"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "452"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: ATP + cob(I)alamin + H2O = phosphate + diphosphate + adenosylcobalamin."@en ; rdfs:label "adenosyltransferase"@en , "GO:0008817"@en , "CobA"@en , "Co-beta-adenosyltransferase"@en , "cobeta-adenosyltransferase"@en , "vitamin B12s adenosyltransferase"@en , "ATP:corrinoid adenosyltransferase"@en , "acid-a c-diamide cobeta-adenosyltransferase"@en , "cob(I)yrinic acid a,c-diamide adenosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008817"^^xsd:string ; + owl:hasValue "COBALADENOSYLTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.17"^^xsd:string ; + owl:hasValue "GO:0008817"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COBALADENOSYLTRANS-RXN"^^xsd:string ; + owl:hasValue "2.5.1.17"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:23287 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "irreversible"@en ; - rdfs:label "Isomaltose 6-alpha-D-glucanohydrolase"@en , "cpd:C00252 => cpd:C00252"@en , "C00252 + C00001 <=> C00267 + C00031"@en ; - sybio:accession "RN:R01718"^^xsd:string ; - sybio:catalyzedBy bo:19332 , bo:20179 ; - sybio:catalyzingClass bo:19333 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11648 ; - tawny:name "23287"@en . +bo:452 a owl:Class ; + rdfs:label "COG1075"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1075"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "452"@en . bo:29012 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU40130;"@en ; @@ -316606,6 +316595,17 @@ bo:29012 a sybio:CDS , owl:NamedIndividual ; "18.0"@en ; tawny:name "29012"@en . +bo:23287 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "irreversible"@en ; + rdfs:label "Isomaltose 6-alpha-D-glucanohydrolase"@en , "cpd:C00252 => cpd:C00252"@en , "C00252 + C00001 <=> C00267 + C00031"@en ; + sybio:accession "RN:R01718"^^xsd:string ; + sybio:catalyzedBy bo:19332 , bo:20179 ; + sybio:catalyzingClass bo:19333 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11648 ; + tawny:name "23287"@en . + bo:540 a owl:Class ; rdfs:label "COG0412"@en ; rdfs:subClassOf bo:201 , sybio:COG ; @@ -317276,17 +317276,6 @@ bo:30466 a owl:NamedIndividual , sybio:CDS ; "173.0"@en ; tawny:name "30466"@en . -bo:11666 a owl:Class ; - rdfs:comment "Abstract referenced KO Pathway"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:MAP00563"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11666"@en . - bo:26976 a sybio:Protein , bo:378 , owl:NamedIndividual , bo:379 , bo:380 ; rdfs:comment "PTS system trehalose-specific EIIBC component;derived protein"@en , "BSU07800;phosphotransferase system (PTS) trehalose-specific enzyme IIBC component"@en ; rdfs:label "treP"@en , "BSU07800"@en , "PTS"@en , "TreP"@en , "TreB"@en ; @@ -317308,6 +317297,17 @@ bo:26976 a sybio:Protein , bo:378 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26976"@en . +bo:11666 a owl:Class ; + rdfs:comment "Abstract referenced KO Pathway"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:MAP00563"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11666"@en . + bo:18045 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "ferroxidase [EC:1.16.3.1]"@en ; rdfs:label "CP"@en , "E1.16.3.1"@en ; @@ -317371,11 +317371,11 @@ bo:18133 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GLTX"@en , "EARS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004818"^^xsd:string ; + owl:hasValue "COG0008"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0008"^^xsd:string ; + owl:hasValue "0004818"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -317792,6 +317792,22 @@ bo:30429 a sybio:CDS , owl:NamedIndividual ; "26.0"@en ; tawny:name "30429"@en . +bo:11629 a owl:NamedIndividual , sybio:Pathway , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00410.png"@en ; + rdfs:label "beta-Alanine metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00410"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11578 , bo:11580 , bo:11561 , bo:11693 , bo:11637 , bo:11716 , bo:11603 ; + sybio:derivesFrom bo:11630 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00410"@en ; + tawny:name "11629"@en . + bo:26939 a sybio:Protein , bo:383 , owl:NamedIndividual ; rdfs:comment "3-hexulose-6-phosphate isomerase;;derived protein"@en , "6-phospho-3-hexuloisomerase (PHI);BSU03450"@en ; rdfs:label "HxlB"@en , "YckF"@en , "hxlB"@en , "BSU03450"@en ; @@ -317811,22 +317827,6 @@ bo:26939 a sybio:Protein , bo:383 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26939"@en . -bo:11629 a owl:NamedIndividual , sybio:Pathway , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00410.png"@en ; - rdfs:label "beta-Alanine metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00410"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11578 , bo:11580 , bo:11561 , bo:11693 , bo:11637 , bo:11716 , bo:11603 ; - sybio:derivesFrom bo:11630 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00410"@en ; - tawny:name "11629"@en . - bo:18008 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5]"@en ; rdfs:label "E1.2.99.5B"@en , "FMDB"@en , "FWDB"@en ; @@ -318741,16 +318741,6 @@ bo:31309 a owl:NamedIndividual , sybio:CDS ; "0.0"@en ; tawny:name "31309"@en . -bo:27819 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yyaC_RBS"@en ; - sybio:NA "ATAACAAGGAAGTGAAACCC"^^xsd:string ; - sybio:begin "4204880"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "4204899"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28779 ; - tawny:name "27819"@en . - bo:12509 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C9H17N3O2R2"@en ; rdfs:label "C9H17N3O2R2"@en , "Protein N6,N6-dimethyl-L-lysine"@en ; @@ -318762,6 +318752,16 @@ bo:12509 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05545"@en ; tawny:name "12509"@en . +bo:27819 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yyaC_RBS"@en ; + sybio:NA "ATAACAAGGAAGTGAAACCC"^^xsd:string ; + sybio:begin "4204880"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "4204899"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28779 ; + tawny:name "27819"@en . + bo:7235 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "SubR"@en ; rdfs:label "subR"@en ; @@ -319118,11 +319118,11 @@ bo:13514 a owl:NamedIndividual , sybio:Compound ; rdfs:label "pyridine nucleotide biosynthesis"@en , "pyridine nucleotide formation"@en , "pyridine nucleotide anabolism"@en , "GO:0019363"@en , "pyridine nucleotide synthesis"@en , "pyridine nucleotide biosynthetic process"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PYRIDNUCSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0019363"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019363"^^xsd:string ; + owl:hasValue "PYRIDNUCSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -319134,19 +319134,19 @@ bo:13514 a owl:NamedIndividual , sybio:Compound ; rdfs:label "GO:0004053"@en , "L-arginase"@en , "L-arginine amidinohydrolase"@en , "canavanase"@en , "arginine transamidinase"@en , "arginine amidinase"@en , "arginase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.3.1"^^xsd:string ; + owl:hasValue "7167 \"arginase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7167 \"arginase activity\""^^xsd:string ; + owl:hasValue "GO:0004053"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARGINASE-RXN"^^xsd:string ; + owl:hasValue "3.5.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004053"^^xsd:string ; + owl:hasValue "ARGINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -319225,11 +319225,11 @@ bo:13602 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.3.3"^^xsd:string ; + owl:hasValue "DETHIOBIOTIN-SYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DETHIOBIOTIN-SYN-RXN"^^xsd:string ; + owl:hasValue "6.3.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -319588,6 +319588,17 @@ bo:14431 a owl:NamedIndividual , sybio:Compound ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27020 a sybio:MicroarrayExperiment , owl:NamedIndividual ; + rdfs:comment "B.subtilis time course during N starvation, 0 h"@en ; + rdfs:label "ex0000782"@en ; + sybio:accession "ex0000782"^^xsd:string ; + sybio:controlExperiment "strain: 168 trpC2,\nmedium: MM+0.02% glutamine, temperature: 37 deg C,\nharvest point: OD600=0.375 middle logarithmic phase"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "14769884"^^xsd:string ; + sybio:targetExperiment "strain: 168 trpC2,\nmedium: MM+0.02% glutamine, temperature: 37 deg C,\nharvest point: OD600=0.7 at the onset of growth arrest"@en ; + tawny:name "27020"@en . + bo:21295 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "C00044 + C00130 + C00049 <=> C00035 + C00009 + C03794"@en , "IMP"@en , "cpd:C00130 => cpd:C00130"@en , "L-aspartate ligase (GDP-forming)"@en ; @@ -319600,17 +319611,6 @@ bo:21295 a owl:NamedIndividual , sybio:Reaction ; sybio:sharesIntermediate bo:21311 , bo:21286 , bo:21614 , bo:21525 , bo:11605 , bo:21607 , bo:11603 , bo:21574 , bo:11714 , bo:11637 , bo:11629 , bo:11594 , bo:11716 , bo:21308 , bo:11584 , bo:21588 , bo:21598 , bo:21594 , bo:21362 ; tawny:name "21295"@en . -bo:27020 a sybio:MicroarrayExperiment , owl:NamedIndividual ; - rdfs:comment "B.subtilis time course during N starvation, 0 h"@en ; - rdfs:label "ex0000782"@en ; - sybio:accession "ex0000782"^^xsd:string ; - sybio:controlExperiment "strain: 168 trpC2,\nmedium: MM+0.02% glutamine, temperature: 37 deg C,\nharvest point: OD600=0.375 middle logarithmic phase"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "14769884"^^xsd:string ; - sybio:targetExperiment "strain: 168 trpC2,\nmedium: MM+0.02% glutamine, temperature: 37 deg C,\nharvest point: OD600=0.7 at the onset of growth arrest"@en ; - tawny:name "27020"@en . - bo:21383 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "C00131 + C00039 <=> C00013 + C00039"@en , "cpd:C00131 <=> cpd:C00131"@en , "Deoxyadenosine 5'-triphosphate"@en , "DNA deoxynucleotidyltransferase(DNA-directed)"@en ; @@ -319640,19 +319640,19 @@ bo:21471 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "adenylate cyclase"@en , "adenyl cyclase"@en , "GO:0004016"@en , "ATP diphosphate-lyase"@en , "adenylyl cyclase"@en , "cAMP generating peptide"@en , "3' 5'-cyclic AMP synthetase"@en , "ATP pyrophosphate-lyase"@en , "adenylylcyclase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.6.1.1"^^xsd:string ; + owl:hasValue "GO:0004016"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7056 \"adenylate cyclase activity\""^^xsd:string ; + owl:hasValue "ADENYLATECYC-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004016"^^xsd:string ; + owl:hasValue "4.6.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENYLATECYC-RXN"^^xsd:string ; + owl:hasValue "7056 \"adenylate cyclase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -319676,22 +319676,22 @@ bo:2478 a owl:NamedIndividual , sybio:Protein ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: an acylcholine + H2O = choline + a carboxylic acid anion."@en ; - rdfs:label "GO:0004104"@en , "butyrylcholine esterase"@en , "cholinesterase"@en , "butyrylcholinesterase"@en , "BtChoEase"@en , "benzoylcholinesterase"@en , "non-specific cholinesterase"@en , "pseudocholinesterase"@en , "choline esterase II"@en , "anticholineesterase"@en , "propionylcholinesterase"@en , "acylcholine acylhydrolase"@en , "choline esterase"@en ; + rdfs:label "GO:0004104"@en , "butyrylcholine esterase"@en , "cholinesterase"@en , "butyrylcholinesterase"@en , "BtChoEase"@en , "benzoylcholinesterase"@en , "pseudocholinesterase"@en , "non-specific cholinesterase"@en , "choline esterase II"@en , "anticholineesterase"@en , "propionylcholinesterase"@en , "acylcholine acylhydrolase"@en , "choline esterase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004104"^^xsd:string ; + owl:hasValue "8144 \"cholinesterase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8144 \"cholinesterase activity\""^^xsd:string ; + owl:hasValue "GO:0004104"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CHOLINESTERASE-RXN"^^xsd:string ; + owl:hasValue "3.1.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.8"^^xsd:string ; + owl:hasValue "CHOLINESTERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -319856,7 +319856,7 @@ bo:968 a owl:Class ; rdfs:label "cyclomaltodextrin dextrin-hydrolase"@en , "cyclomaltodextrinase"@en , "GO:0047798"@en , "cyclodextrinase"@en , "cyclohexaglucanase"@en , "cycloheptaglucanase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047798"^^xsd:string ; + owl:hasValue "CYCLOMALTODEXTRINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -319864,7 +319864,7 @@ bo:968 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYCLOMALTODEXTRINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0047798"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320101,11 +320101,11 @@ bo:21346 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0051287"@en , "NAD or NADH binding"@en , "nicotinamide adenine dinucleotide binding"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051287"^^xsd:string ; + owl:hasValue "GO:0051288"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051288"^^xsd:string ; + owl:hasValue "GO:0051287"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320145,11 +320145,11 @@ bo:18598 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "aminotransferase"@en , "transaminase"@en , "GO:0008483"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.-"^^xsd:string ; + owl:hasValue "GO:0008483"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008483"^^xsd:string ; + owl:hasValue "2.6.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320547,7 +320547,7 @@ bo:18649 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008534"^^xsd:string ; + owl:hasValue "3.2.2.23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -320555,11 +320555,11 @@ bo:18649 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.23-RXN"^^xsd:string ; + owl:hasValue "GO:0008534"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.23"^^xsd:string ; + owl:hasValue "3.2.2.23-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320603,11 +320603,11 @@ bo:18825 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "8-amino-7-oxononanoate synthase"@en , "8-amino-7-oxopelargonate synthase"@en , "7-keto-8-amino-pelargonic acid synthetase"@en , "7-keto-8-aminopelargonic synthetase"@en , "7-keto-8-aminopelargonic acid synthetase"@en , "6-carboxyhexanoyl-CoA:L-alanine C-carboxyhexanoyltransferase"@en , "7-KAP synthetase"@en , "8-amino-7-ketopelargonate synthase"@en , "AONS"@en , "GO:0008710"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7KAPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0008710"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008710"^^xsd:string ; + owl:hasValue "7KAPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -320737,7 +320737,7 @@ bo:4451 a sybio:Operon , owl:NamedIndividual ; tawny:name "4451"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; + a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of ions across a membrane. The reaction is characterized by the transient formation of a high-energy aspartyl-phosphoryl-enzyme intermediate."@en ; rdfs:label "zinc cadmium cobalt nickel lead-efflux ATPase"@en , "P-type ATPase"@en , "GO:0015662"@en , "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"@en ; rdfs:subClassOf sybio:MolecularFunction ; @@ -320754,11 +320754,11 @@ bo:4451 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0009099"@en , "valine biosynthetic process"@en , "valine anabolism"@en , "valine synthesis"@en , "valine formation"@en , "valine biosynthesis"@en ; rdfs:subClassOf , sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "VALSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0009099"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009099"^^xsd:string ; + owl:hasValue "VALSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320886,15 +320886,15 @@ bo:19566 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "GO:0009451"@en , "RNA modification"@en , "RNA editing"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009451"^^xsd:string ; + owl:hasValue "GO:0016547"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RNA_editing"^^xsd:string ; + owl:hasValue "GO:0009451"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016547"^^xsd:string ; + owl:hasValue "RNA_editing"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -320948,23 +320948,6 @@ bo:16015 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11182"@en ; tawny:name "16015"@en . -bo:10378 a sybio:Protein , bo:696 , owl:NamedIndividual , bo:1179 ; - rdfs:comment "BSU28590;DNA polymerase X"@en , "Uncharacterized protein yshC"@en ; - rdfs:label "yshC"@en , "PolX"@en , "BSU28590"@en , "YshC"@en ; - sybio:AA "MHKKDIIRLLETIAVYMELKGDNPFKVSAFRKAAAALEQDDRSLSEMDDMMSLSGIGKGTYSVIKEYIDEGKSSTLESLQKEVPEGLVPLLKLPGLGGKKIAKLYKELGVHDAESLKEACEQQKVQGLAGFGKKSEEKILQALGEAGKQPERFPIGYALRIAREIEEHLSQFTHIIKFSRAGSLRRARETVKDLDYIIATDHPAEVREQLLELPNIKSVIASGDTKVSVILSFEYETSVDFRLVTEEQFPTTLHHFTGSKDHNIKMRQIAKERGERISEYGVETVETGEIKTFPSEREFYAHFGLPLIPPEIRESGQEVETYSDSIELIELGQIKGDLHMHSTWSDGAFSIREMAEACIKKGYQYMAITDHSQYLKVANGLTAERLKQQAKEIDALNAEFENFRILKGVEMDILPDGTLDYDDDVLAEMDIVIASIHSSFNQPEHVIMKRLETALTNKHVDIIAHPTGRLIGRRAGYEIDIDQLIELARKTNTALELNANPARLDLRTEHLMKANEQGVTLVINTDAHNIEMLDDMKTGVTAARKGWTETKNVLNARSLKDVEAFLKRND"@en ; - sybio:accession "BSU28590"^^xsd:string , "P94544"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30341 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "64117.615"^^xsd:string ; - sybio:pI "5.436012"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10378"@en . - bo:19830 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "menH"@en ; @@ -320986,6 +320969,23 @@ bo:25688 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25688"@en . +bo:10378 a sybio:Protein , bo:696 , owl:NamedIndividual , bo:1179 ; + rdfs:comment "BSU28590;DNA polymerase X"@en , "Uncharacterized protein yshC"@en ; + rdfs:label "yshC"@en , "PolX"@en , "BSU28590"@en , "YshC"@en ; + sybio:AA "MHKKDIIRLLETIAVYMELKGDNPFKVSAFRKAAAALEQDDRSLSEMDDMMSLSGIGKGTYSVIKEYIDEGKSSTLESLQKEVPEGLVPLLKLPGLGGKKIAKLYKELGVHDAESLKEACEQQKVQGLAGFGKKSEEKILQALGEAGKQPERFPIGYALRIAREIEEHLSQFTHIIKFSRAGSLRRARETVKDLDYIIATDHPAEVREQLLELPNIKSVIASGDTKVSVILSFEYETSVDFRLVTEEQFPTTLHHFTGSKDHNIKMRQIAKERGERISEYGVETVETGEIKTFPSEREFYAHFGLPLIPPEIRESGQEVETYSDSIELIELGQIKGDLHMHSTWSDGAFSIREMAEACIKKGYQYMAITDHSQYLKVANGLTAERLKQQAKEIDALNAEFENFRILKGVEMDILPDGTLDYDDDVLAEMDIVIASIHSSFNQPEHVIMKRLETALTNKHVDIIAHPTGRLIGRRAGYEIDIDQLIELARKTNTALELNANPARLDLRTEHLMKANEQGVTLVINTDAHNIEMLDDMKTGVTAARKGWTETKNVLNARSLKDVEAFLKRND"@en ; + sybio:accession "BSU28590"^^xsd:string , "P94544"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30341 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "64117.615"^^xsd:string ; + sybio:pI "5.436012"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10378"@en . + bo:16103 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "tyrosine 3-monooxygenase [EC:1.14.16.2]"@en ; rdfs:label "TH"@en ; @@ -320996,6 +320996,17 @@ bo:16103 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00501"@en ; tawny:name "16103"@en . +bo:25776 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "SIAT6 - reversible"@en ; + rdfs:label "G10616 + G00037 <=> G10621 + G00047"@en , "gl:G00037 <=> gl:G00037"@en ; + sybio:accession "RN:R06153"^^xsd:string ; + sybio:catalyzedBy bo:18823 , bo:18826 ; + sybio:catalyzingClass bo:25777 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25776"@en . + bo:10466 a bo:1697 , bo:668 , bo:890 , sybio:Protein , bo:486 , owl:NamedIndividual ; rdfs:comment "BSU32230;putative acylaminoacyl-peptidase"@en , "YuxL;Uncharacterized peptidase yuxL;"@en ; rdfs:label "YuxL"@en , "yuxL"@en , "BSU32230"@en ; @@ -321014,17 +321025,6 @@ bo:10466 a bo:1697 , bo:668 , bo:890 , sybio:Protein , bo: sybio:taxId "224308"@en ; tawny:name "10466"@en . -bo:25776 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "SIAT6 - reversible"@en ; - rdfs:label "G10616 + G00037 <=> G10621 + G00047"@en , "gl:G00037 <=> gl:G00037"@en ; - sybio:accession "RN:R06153"^^xsd:string ; - sybio:catalyzedBy bo:18823 , bo:18826 ; - sybio:catalyzingClass bo:25777 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25776"@en . - bo:5192 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yppQ"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -321033,6 +321033,15 @@ bo:5192 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yppQ"@en ; tawny:name "5192"@en . +bo:25864 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "cathenamine reductase - reversible"@en ; + rdfs:label "cpd:C11680 <=> cpd:C11680"@en , "C11680 + C00005 + C00080 <=> C09024 + C00006"@en ; + sybio:accession "RN:R05847"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25864"@en . + bo:10554 a sybio:Protein , owl:NamedIndividual , bo:542 , bo:543 ; rdfs:comment "Uncharacterized phosphatase ywpJ"@en , "putative phosphatase;BSU36290"@en ; rdfs:label "YwpJ"@en , "ywpJ"@en , "BSU36290"@en ; @@ -321050,15 +321059,6 @@ bo:10554 a sybio:Protein , owl:NamedIndividual , bo:542 , bo sybio:taxId "[224308, 1423]"@en ; tawny:name "10554"@en . -bo:25864 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "cathenamine reductase - reversible"@en ; - rdfs:label "cpd:C11680 <=> cpd:C11680"@en , "C11680 + C00005 + C00080 <=> C09024 + C00006"@en ; - sybio:accession "RN:R05847"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25864"@en . - bo:5280 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ypuE-ribDEAHT_terminator"@en ; sybio:NA "TAAAATACCTAAAGCCCCGAATTTTTTATAAATTCGGGGCTTTTTTGACGGTAAA"^^xsd:string ; @@ -321370,25 +321370,6 @@ bo:30183 a owl:NamedIndividual , sybio:CDS ; "14.0"@en ; tawny:name "30183"@en . -bo:11383 a owl:NamedIndividual , sybio:Protein , bo:547 ; - rdfs:comment "Kinase A inhibitor"@en , "BSU04080;putative inhibitor of the autophosphorylation reaction of KinA;"@en ; - rdfs:label "BSU04080"@en , "YcsJ"@en , "kipI"@en , "KipI"@en ; - sybio:AA "MTVRYQIEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYEVYKHLPQGISSPFESVKRDVEERLAEIAEDYEVNRRIVEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRIAAPRKSSPRPSIPAGSVGIAGLQTGVYPISTPGGWQLIGKTPLALFRPQENPPTLLRAGDIVKFVRISEKDYHAYKEESN"@en ; - sybio:accession "BSU04080"^^xsd:string , "P60495"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30964 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "1.8 : Sporulation"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "26719.475"^^xsd:string ; - sybio:pI "4.848763"^^xsd:string ; - sybio:productType "pf : putative factor"^^xsd:string ; - sybio:relatedTo bo:11384 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11383"@en . - bo:26693 a bo:431 , bo:364 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU02420;glutamine transporter"@en , "derived protein;Probable sodium/glutamine symporter glnT"@en ; rdfs:label "glnT"@en , "YbgH"@en , "BSU02420"@en , "GlnT"@en ; @@ -321409,24 +321390,24 @@ bo:26693 a bo:431 , bo:364 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "26693"@en . -bo:11471 a bo:883 , owl:NamedIndividual , sybio:Protein , bo:694 ; - rdfs:comment "ATP-dependent helicase/nuclease subunit A"@en , "ATP-dependent deoxyribonuclease (subunit A);BSU10630"@en ; - rdfs:label "addA"@en , "BSU10630"@en , "AddA"@en , "RecE5"@en ; - sybio:AA "MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDGGHILTL"@en ; - sybio:accession "P23478"^^xsd:string , "BSU10630"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; +bo:11383 a owl:NamedIndividual , sybio:Protein , bo:547 ; + rdfs:comment "Kinase A inhibitor"@en , "BSU04080;putative inhibitor of the autophosphorylation reaction of KinA;"@en ; + rdfs:label "BSU04080"@en , "YcsJ"@en , "kipI"@en , "KipI"@en ; + sybio:AA "MTVRYQIEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYEVYKHLPQGISSPFESVKRDVEERLAEIAEDYEVNRRIVEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRIAAPRKSSPRPSIPAGSVGIAGLQTGVYPISTPGGWQLIGKTPLALFRPQENPPTLLRAGDIVKFVRISEKDYHAYKEESN"@en ; + sybio:accession "BSU04080"^^xsd:string , "P60495"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31011 ; + sybio:encodedBy bo:30964 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , , , ; - sybio:hasRole "3.3 : DNA recombination"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "141082.385"^^xsd:string ; - sybio:pI "5.287437"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:9591 , bo:9588 , bo:9373 , bo:9593 , bo:6901 , bo:6924 , bo:11128 ; + sybio:hasFunction , , ; + sybio:hasRole "1.8 : Sporulation"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "26719.475"^^xsd:string ; + sybio:pI "4.848763"^^xsd:string ; + sybio:productType "pf : putative factor"^^xsd:string ; + sybio:relatedTo bo:11384 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11471"@en . + tawny:name "11383"@en . bo:30271 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26510"@en ; @@ -321473,6 +321454,25 @@ bo:26781 a bo:503 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26781"@en . +bo:11471 a bo:883 , owl:NamedIndividual , sybio:Protein , bo:694 ; + rdfs:comment "ATP-dependent helicase/nuclease subunit A"@en , "ATP-dependent deoxyribonuclease (subunit A);BSU10630"@en ; + rdfs:label "addA"@en , "BSU10630"@en , "AddA"@en , "RecE5"@en ; + sybio:AA "MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDGGHILTL"@en ; + sybio:accession "P23478"^^xsd:string , "BSU10630"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31011 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , , , ; + sybio:hasRole "3.3 : DNA recombination"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "141082.385"^^xsd:string ; + sybio:pI "5.287437"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:9591 , bo:9588 , bo:9373 , bo:9593 , bo:6901 , bo:6924 , bo:11128 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11471"@en . + a owl:NamedIndividual , owl:Class , sybio:CellularComponent ; rdfs:comment "An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2)."@en ; @@ -321788,25 +321788,6 @@ bo:30058 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30058"@en . -bo:11258 a bo:283 , bo:286 , sybio:Protein , bo:285 , owl:NamedIndividual , bo:287 ; - rdfs:comment "BSU00870;DNA repair protein; 6-O-methylguanine-DNA methyltransferase"@en , "DNA repair protein radA homolog"@en ; - rdfs:label "BSU00870"@en , "YacJ"@en , "radA"@en , "RadA"@en , "Sms"@en ; - sybio:AA "MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG"@en ; - sybio:accession "BSU00870"^^xsd:string , "P37572"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30929 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , , , ; - sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "49480.975"^^xsd:string ; - sybio:pI "8.433571"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11259 , bo:6830 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11258"@en . - bo:26568 a sybio:Protein , bo:667 , bo:1566 , owl:NamedIndividual ; rdfs:comment "Ketol-acid reductoisomerase;;derived protein"@en , "acetohydroxy-acid isomeroreductase;BSU28290"@en ; rdfs:label "IlvC"@en , "BSU28290"@en , "ilvC"@en ; @@ -321826,6 +321807,25 @@ bo:26568 a sybio:Protein , bo:667 , bo:1566 , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "26568"@en . +bo:11258 a bo:283 , bo:286 , sybio:Protein , bo:285 , owl:NamedIndividual , bo:287 ; + rdfs:comment "BSU00870;DNA repair protein; 6-O-methylguanine-DNA methyltransferase"@en , "DNA repair protein radA homolog"@en ; + rdfs:label "BSU00870"@en , "YacJ"@en , "radA"@en , "RadA"@en , "Sms"@en ; + sybio:AA "MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG"@en ; + sybio:accession "BSU00870"^^xsd:string , "P37572"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30929 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , , , ; + sybio:hasRole "3.2 : DNA restriction/modification and repair"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "49480.975"^^xsd:string ; + sybio:pI "8.433571"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11259 , bo:6830 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11258"@en . + bo:30146 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU23350"@en ; rdfs:label "ypzD"@en , "BSU23350"@en ; @@ -322063,6 +322063,22 @@ bo:30410 a owl:NamedIndividual , sybio:CDS ; "105.0"@en ; tawny:name "30410"@en . +bo:11610 a owl:NamedIndividual , sybio:Pathway , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00360.png"@en ; + rdfs:label "Phenylalanine metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00360"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11614 , bo:11620 , bo:11689 ; + sybio:derivesFrom bo:11611 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00360"@en ; + tawny:name "11610"@en . + bo:26920 a sybio:Protein , owl:NamedIndividual , bo:451 ; rdfs:comment "BSU02690;L-asparaginase (putative lipoprotein);"@en , "L-asparaginase 2;derived protein"@en ; rdfs:label "YccC"@en , "AnsZ"@en , "ansZ"@en , "BSU02690"@en ; @@ -322082,22 +322098,6 @@ bo:26920 a sybio:Protein , owl:NamedIndividual , bo:451 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26920"@en . -bo:11610 a owl:NamedIndividual , sybio:Pathway , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00360.png"@en ; - rdfs:label "Phenylalanine metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00360"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11614 , bo:11620 , bo:11689 ; - sybio:derivesFrom bo:11611 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00360"@en ; - tawny:name "11610"@en . - bo:24023 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "NAD+ 1,2-oxidoreductase"@en , "C16203 + C00003 <=> C16204 + C00004 + C00080"@en , "cpd:C16203 => cpd:C16203"@en , "anthracene cis-1,2-dihydrodiol"@en ; @@ -322118,15 +322118,15 @@ bo:24023 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.99.1.-"^^xsd:string ; + owl:hasValue "GO:0003916"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.99.1.2-RXN"^^xsd:string ; + owl:hasValue "5.99.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003916"^^xsd:string ; + owl:hasValue "5.99.1.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -322339,19 +322339,19 @@ bo:32918 a owl:NamedIndividual , sybio:CDS , sybio:KinaseEnco rdfs:label "L-proline:acceptor oxidoreductase"@en , "GO:0004657"@en , "proline dehydrogenase"@en , "L-proline dehydrogenase"@en , "oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-7181"^^xsd:string ; + owl:hasValue "GO:0004657"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13472 \"proline dehydrogenase activity\""^^xsd:string ; + owl:hasValue "1.5.99.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.5.99.8"^^xsd:string ; + owl:hasValue "13472 \"proline dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004657"^^xsd:string ; + owl:hasValue "RXN-7181"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -323216,15 +323216,15 @@ bo:7003 a bo:1354 , owl:NamedIndividual , sybio:Protein ; rdfs:label "ribosomal protein S18 acetyltransferase"@en , "acetyl-CoA:ribosomal-protein-L-alanine N-acetyltransferase"@en , "ribosomal-protein-alanine N-acetyltransferase"@en , "GO:0008999"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008999"^^xsd:string ; + owl:hasValue "2.3.1.128-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.128"^^xsd:string ; + owl:hasValue "GO:0008999"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.128-RXN"^^xsd:string ; + owl:hasValue "2.3.1.128"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -323356,11 +323356,11 @@ bo:15739 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.3.3.14"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004410"^^xsd:string ; + owl:hasValue "COG0119"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0119"^^xsd:string ; + owl:hasValue "0004410"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -323398,35 +323398,35 @@ bo:16569 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09459"@en ; tawny:name "16569"@en . -bo:16657 a owl:Class , owl:NamedIndividual , sybio:KOEN ; - rdfs:comment "gamma-glutamylcyclotransferase [EC:2.3.2.4]"@en ; - rdfs:label "GGCT"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003839"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00682"@en ; - tawny:name "16657"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid."@en ; rdfs:label "glutamine synthesis"@en , "glutamine biosynthetic process"@en , "glutamine biosynthesis"@en , "glutamine formation"@en , "glutamine anabolism"@en , "GO:0006542"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLNSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0006542"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006542"^^xsd:string ; + owl:hasValue "GLNSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16657 a owl:Class , owl:NamedIndividual , sybio:KOEN ; + rdfs:comment "gamma-glutamylcyclotransferase [EC:2.3.2.4]"@en ; + rdfs:label "GGCT"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0003839"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00682"@en ; + tawny:name "16657"@en . + bo:16745 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "amylosucrase [EC:2.4.1.4]"@en ; rdfs:label "E2.4.1.4"@en ; @@ -323786,11 +323786,11 @@ bo:17662 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "LSC1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004775"^^xsd:string ; + owl:hasValue "0004776"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004776"^^xsd:string ; + owl:hasValue "0004775"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -323979,11 +323979,11 @@ bo:4879 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "regulation of protein synthesis"@en , "regulation of protein anabolism"@en , "GO:0006417"@en , "regulation of protein biosynthesis"@en , "regulation of translation"@en , "regulation of protein formation"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006417"^^xsd:string ; + owl:hasValue "GO:0006445"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006445"^^xsd:string ; + owl:hasValue "GO:0006417"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -324014,7 +324014,7 @@ bo:16708 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.4.1.34"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT2"^^xsd:string ; + owl:hasValue "GT48"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -324022,7 +324022,7 @@ bo:16708 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT48"^^xsd:string ; + owl:hasValue "GT2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -324590,11 +324590,11 @@ bo:18454 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.2.1.105"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050422"^^xsd:string ; + owl:hasValue "Q9M7N7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9M7N7"^^xsd:string ; + owl:hasValue "0050422"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -324761,11 +324761,11 @@ bo:19195 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "BZ1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047213"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "0047213"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -324932,6 +324932,18 @@ bo:10095 a owl:NamedIndividual , bo:211 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10095"@en . +bo:25493 a sybio:EC , owl:NamedIndividual , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.1.1.105"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.105"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25493"@en . + bo:10183 a owl:NamedIndividual , bo:226 , sybio:Protein ; rdfs:comment "Protein csaA;CsaA"@en , "BSU19040;molecular chaperone;"@en ; rdfs:label "BSU19040"@en , "csaA"@en , "CsaA"@en ; @@ -324950,17 +324962,17 @@ bo:10183 a owl:NamedIndividual , bo:226 , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "10183"@en . -bo:25493 a sybio:EC , owl:NamedIndividual , owl:Class ; +bo:25581 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.1.1.105"@en ; + rdfs:label "2.4.1.149"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.105"^^xsd:string ; + owl:hasValue "2.4.1.149"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25493"@en . + tawny:name "25581"@en . bo:10271 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "stage V sporulation germinant protein;BSU23401"@en , "Stage V sporulation protein AE"@en ; @@ -324980,18 +324992,6 @@ bo:10271 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10271"@en . -bo:25581 a owl:Class , sybio:EC , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.149"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.149"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25581"@en . - bo:6588 a sybio:TF , owl:NamedIndividual ; rdfs:comment "two-component response regulator [NatK]"@en ; rdfs:label "BSU02740"@en , "NatR"@en , "YccH"@en ; @@ -325161,11 +325161,11 @@ bo:24539 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "proton transporter"@en , "hydrogen ion transmembrane transporter"@en , "GO:0015078"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1383 \"hydrogen ion transmembrane transporter activity\""^^xsd:string ; + owl:hasValue "GO:0015078"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015078"^^xsd:string ; + owl:hasValue "1383 \"hydrogen ion transmembrane transporter activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -325443,24 +325443,6 @@ bo:31931 a owl:NamedIndividual , sybio:CDS ; "4.0"@en ; tawny:name "31931"@en . -bo:10058 a owl:NamedIndividual , sybio:Protein , bo:671 , bo:670 , bo:672 ; - rdfs:comment "BSU06330;conserved hypothetical protein"@en , "Uncharacterized protein yeaC"@en ; - rdfs:label "yeaC"@en , "YeaC"@en , "BSU06330"@en ; - sybio:AA "MAYQEDLHPLLGKAVEHINRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPDLLPSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHTMQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYPSFNEELDVLSLQEKSHPIETLEPVIAKEDFIFLQREVQNVRADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIALMKAAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKVPVQRSAVR"@en ; - sybio:accession "BSU06330"^^xsd:string , "P94474"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:32038 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "35856.165"^^xsd:string ; - sybio:pI "5.61834"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10058"@en . - bo:19510 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "yitB"@en ; @@ -325483,6 +325465,24 @@ bo:25368 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25368"@en . +bo:10058 a owl:NamedIndividual , sybio:Protein , bo:671 , bo:670 , bo:672 ; + rdfs:comment "BSU06330;conserved hypothetical protein"@en , "Uncharacterized protein yeaC"@en ; + rdfs:label "yeaC"@en , "YeaC"@en , "BSU06330"@en ; + sybio:AA "MAYQEDLHPLLGKAVEHINRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPDLLPSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHTMQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYPSFNEELDVLSLQEKSHPIETLEPVIAKEDFIFLQREVQNVRADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIALMKAAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKVPVQRSAVR"@en ; + sybio:accession "BSU06330"^^xsd:string , "P94474"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:32038 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "35856.165"^^xsd:string ; + sybio:pI "5.61834"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10058"@en . + bo:25456 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "4.2.3.19"@en ; @@ -325853,6 +325853,24 @@ bo:26285 a bo:407 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26285"@en . +bo:26373 a sybio:Protein , bo:462 , owl:NamedIndividual ; + rdfs:comment "BSU16870;putative oxidoreductase"@en , "Uncharacterized oxidoreductase ymfI;derived protein"@en ; + rdfs:label "YmfI"@en , "BSU16870"@en , "ymfI"@en ; + sybio:AA "MNKTALITGASGGIGKSISETLAARGYNLLLHYNTNQNAAAELAEKLSQMFGVNAEILQADLSAQDGADKLTSSIVQPIDAIVLNSGRSHFGLITDVDNATVQEMVQLHVASPYMLTRNLLPGMIRNKSGAIVAVSSIWGETGASCEVLYSMAKGAQHSFVKGLAKELAPSGIRVNAVAPGAVDTNMMNQFTPAEKEEIADEIPIGRLARPQEIADATAFLLSEKASYITGQILSVNGGWHC"@en ; + sybio:accession "255767385"^^xsd:string , "939588"^^xsd:string , "BSU16870"^^xsd:string , "O31767"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32841 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:interactsWith bo:26338 , bo:9198 ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "25539.985"^^xsd:string ; + sybio:pI "5.359001"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26373"@en . + bo:11063 a owl:NamedIndividual , sybio:Protein , bo:382 , bo:381 ; rdfs:comment "BSU01690;putative transcriptional regulator;;"@en , "Uncharacterized HTH-type transcriptional regulator ybbH"@en ; rdfs:label "BSU01690"@en , "YbbH"@en , "ybbH"@en ; @@ -325872,23 +325890,25 @@ bo:11063 a owl:NamedIndividual , sybio:Protein , bo:382 , tawny:name "11063"@en ; owl:sameAs bo:2636 . -bo:26373 a sybio:Protein , bo:462 , owl:NamedIndividual ; - rdfs:comment "BSU16870;putative oxidoreductase"@en , "Uncharacterized oxidoreductase ymfI;derived protein"@en ; - rdfs:label "YmfI"@en , "BSU16870"@en , "ymfI"@en ; - sybio:AA "MNKTALITGASGGIGKSISETLAARGYNLLLHYNTNQNAAAELAEKLSQMFGVNAEILQADLSAQDGADKLTSSIVQPIDAIVLNSGRSHFGLITDVDNATVQEMVQLHVASPYMLTRNLLPGMIRNKSGAIVAVSSIWGETGASCEVLYSMAKGAQHSFVKGLAKELAPSGIRVNAVAPGAVDTNMMNQFTPAEKEEIADEIPIGRLARPQEIADATAFLLSEKASYITGQILSVNGGWHC"@en ; - sybio:accession "255767385"^^xsd:string , "939588"^^xsd:string , "BSU16870"^^xsd:string , "O31767"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; +bo:26461 a sybio:Protein , bo:1360 , owl:NamedIndividual ; + rdfs:comment "BSU22670;anthranilate phosphoribosyltransferase"@en , "Anthranilate phosphoribosyltransferase;derived protein"@en ; + rdfs:label "TrpD"@en , "BSU22670"@en , "trpD"@en ; + sybio:AA "MNRFLQLCVDGKTLTAGEAETLMNMMMAAEMTPSEMGGILSILAHRGETPEELAGFVKAMRAHALTVDGLPDIVDTCGTGGDGISTFNISTASAIVASAAGAKIAKHGNRSVSSKSGSADVLEELEVSIQTTPEKVKSSIETNNMGFLFAPLYHSSMKHVAGTRKELGFRTVFNLLGPLSNPLQAKRQVIGVYSVEKAGLMASALETFQPKHVMFVSSRDGLDELSITAPTDVIELKDGERREYTVSPEDFGFTNGRLEDLQVQSPKESAYLIQNIFENKSSSSALSITAFNAGAAIYTAGITASLKEGTELALETITSGGAAAQLERLKQKEEEIYA"@en ; + sybio:accession "A3F3M5"^^xsd:string , "50812260"^^xsd:string , "P03947"^^xsd:string , "A3F3G8"^^xsd:string , "BSU22670"^^xsd:string , "939007"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32841 ; + sybio:encodedBy bo:28825 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:interactsWith bo:26338 , bo:9198 ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "25539.985"^^xsd:string ; - sybio:pI "5.359001"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26373"@en . + sybio:hasFunction , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; + sybio:interactsWith bo:26889 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "36021.445"^^xsd:string ; + sybio:pI "5.08535"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26462 ; + sybio:taxId "224308"@en ; + tawny:name "26461"@en . bo:11151 a bo:670 , sybio:Protein , bo:768 , bo:284 , bo:767 , bo:283 , bo:766 , owl:NamedIndividual ; rdfs:comment "transcriptional regulator;BSU08100"@en , "Acetoin dehydrogenase operon transcriptional activator acoR"@en ; @@ -325910,26 +325930,6 @@ bo:11151 a bo:670 , sybio:Protein , bo:768 , bo:284 , bo:767 tawny:name "11151"@en ; owl:sameAs bo:6866 . -bo:26461 a sybio:Protein , bo:1360 , owl:NamedIndividual ; - rdfs:comment "BSU22670;anthranilate phosphoribosyltransferase"@en , "Anthranilate phosphoribosyltransferase;derived protein"@en ; - rdfs:label "TrpD"@en , "BSU22670"@en , "trpD"@en ; - sybio:AA "MNRFLQLCVDGKTLTAGEAETLMNMMMAAEMTPSEMGGILSILAHRGETPEELAGFVKAMRAHALTVDGLPDIVDTCGTGGDGISTFNISTASAIVASAAGAKIAKHGNRSVSSKSGSADVLEELEVSIQTTPEKVKSSIETNNMGFLFAPLYHSSMKHVAGTRKELGFRTVFNLLGPLSNPLQAKRQVIGVYSVEKAGLMASALETFQPKHVMFVSSRDGLDELSITAPTDVIELKDGERREYTVSPEDFGFTNGRLEDLQVQSPKESAYLIQNIFENKSSSSALSITAFNAGAAIYTAGITASLKEGTELALETITSGGAAAQLERLKQKEEEIYA"@en ; - sybio:accession "A3F3M5"^^xsd:string , "50812260"^^xsd:string , "P03947"^^xsd:string , "A3F3G8"^^xsd:string , "BSU22670"^^xsd:string , "939007"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28825 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:interactsWith bo:26889 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "36021.445"^^xsd:string ; - sybio:pI "5.08535"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26462 ; - sybio:taxId "224308"@en ; - tawny:name "26461"@en . - bo:19209 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "chalcone isomerase [EC:5.5.1.6]"@en ; rdfs:label "E5.5.1.6"@en ; @@ -326105,6 +326105,16 @@ bo:32459 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu10120"@en ; tawny:name "32459"@en . +bo:13659 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C9H10N2"@en ; + rdfs:label "C9H10N2"@en , "5,6-Dimethylbenzimidazole"@en , "Dimethylbenzimidazole"@en ; + sybio:accession "C03114"^^xsd:string , "B00544"^^xsd:string , "582-60-5"^^xsd:string , "15890"^^xsd:string , "6009"^^xsd:string ; + sybio:consumedBy bo:24529 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03114"@en ; + tawny:name "13659"@en . + bo:28969 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU39590"@en ; rdfs:label "yxeD"@en , "BSU39590"@en ; @@ -326132,16 +326142,6 @@ bo:28969 a owl:NamedIndividual , sybio:CDS ; "18.0"@en ; tawny:name "28969"@en . -bo:13659 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C9H10N2"@en ; - rdfs:label "C9H10N2"@en , "5,6-Dimethylbenzimidazole"@en , "Dimethylbenzimidazole"@en ; - sybio:accession "C03114"^^xsd:string , "B00544"^^xsd:string , "582-60-5"^^xsd:string , "15890"^^xsd:string , "6009"^^xsd:string ; - sybio:consumedBy bo:24529 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C03114"@en ; - tawny:name "13659"@en . - bo:32547 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "ribokinase (EC:2.7.1.15);"@en , "BSU35920;;"@en ; rdfs:label "BSU35920"@en , "rbsK"@en ; @@ -326263,7 +326263,7 @@ bo:13923 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glyoxalase I"@en , "aldoketomutase"@en , "lactoylglutathione lyase"@en , "methylglyoxal-lyase"@en , "methylglyoxalase"@en , "GO:0004462"@en , "glyoxylase I"@en , "ketone-aldehyde mutase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004462"^^xsd:string ; + owl:hasValue "4.4.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -326271,7 +326271,7 @@ bo:13923 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.5"^^xsd:string ; + owl:hasValue "GO:0004462"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -326313,7 +326313,7 @@ bo:32811 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.6"^^xsd:string ; + owl:hasValue "12403 \"nucleoside diphosphate kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -326321,7 +326321,7 @@ bo:32811 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12403 \"nucleoside diphosphate kinase activity\""^^xsd:string ; + owl:hasValue "2.7.4.6"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -326754,7 +326754,7 @@ bo:21792 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "farnesyl-diphosphate synthase"@en , "farnesylpyrophosphate synthetase"@en , "geranyltranstransferase"@en , "farnesyl diphosphate synthetase"@en , "GO:0004337"@en , "geranyl transferase I"@en , "geranyltransferase"@en , "FPP synthetase"@en , "geranyl-diphosphate:isopentenyl-diphosphate geranyltranstransferase"@en , "farnesyl pyrophosphate synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004337"^^xsd:string ; + owl:hasValue "FPPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -326762,7 +326762,7 @@ bo:21792 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FPPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004337"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -326805,11 +326805,11 @@ bo:21880 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.48"^^xsd:string ; + owl:hasValue "GO:0004425"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004425"^^xsd:string ; + owl:hasValue "4.1.1.48"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -326862,42 +326862,42 @@ bo:15493 a owl:NamedIndividual , sybio:KOEN , owl:Class ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: donor + H2O2 = oxidized donor + 2 H2O.;"@en ; - rdfs:label "thiocyanate peroxidase"@en , "MPO"@en , "GO:0004601"@en , "scopoletin peroxidase"@en , "protoheme peroxidase"@en , "eosinophil peroxidase"@en , "heme peroxidase"@en , "donor:hydrogen-peroxide oxidoreductase"@en , "verdoperoxidase"@en , "horseradish peroxidase"@en , "bacterial catalase-peroxidase"@en , "oxyperoxidase"@en , "extensin peroxidase"@en , "lactoperoxidase"@en , "guaiacol peroxidase"@en , "pyrocatechol peroxidase"@en , "japanese radish peroxidase"@en , "peroxidase reaction"@en , "secretory plant peroxidase"@en , "peroxidase"@en , "myeloperoxidase"@en ; + rdfs:label "thiocyanate peroxidase"@en , "MPO"@en , "GO:0004601"@en , "scopoletin peroxidase"@en , "protoheme peroxidase"@en , "eosinophil peroxidase"@en , "donor:hydrogen-peroxide oxidoreductase"@en , "heme peroxidase"@en , "verdoperoxidase"@en , "horseradish peroxidase"@en , "bacterial catalase-peroxidase"@en , "oxyperoxidase"@en , "extensin peroxidase"@en , "lactoperoxidase"@en , "guaiacol peroxidase"@en , "pyrocatechol peroxidase"@en , "japanese radish peroxidase"@en , "peroxidase reaction"@en , "secretory plant peroxidase"@en , "peroxidase"@en , "myeloperoxidase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016693"^^xsd:string ; + owl:hasValue "GO:0004601"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.-"^^xsd:string ; + owl:hasValue "GO:0016693"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PEROXID-RXN"^^xsd:string ; + owl:hasValue "GO:0016686"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4411 \"peroxidase activity\""^^xsd:string ; + owl:hasValue "1.11.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016687"^^xsd:string ; + owl:hasValue "4411 \"peroxidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016686"^^xsd:string ; + owl:hasValue "PEROXID-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.7"^^xsd:string ; + owl:hasValue "GO:0016685"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016685"^^xsd:string ; + owl:hasValue "1.11.1.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004601"^^xsd:string ; + owl:hasValue "GO:0016687"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -327136,11 +327136,11 @@ bo:14803 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "RHAB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008993"^^xsd:string ; + owl:hasValue "COG1070"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1070"^^xsd:string ; + owl:hasValue "0008993"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -327267,7 +327267,7 @@ bo:21843 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GAH"@en , "guanine aminase"@en , "guanase"@en , "GO:0008892"@en , "guanine aminohydrolase"@en , "guanine deaminase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GUANINE-DEAMINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008892"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -327275,7 +327275,7 @@ bo:21843 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008892"^^xsd:string ; + owl:hasValue "GUANINE-DEAMINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -327365,16 +327365,6 @@ bo:15632 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00388"@en ; tawny:name "15632"@en . -bo:16286 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]"@en ; - rdfs:label "PCAI"@en , "E2.8.3.6A"@en ; - sybio:accession "COG1788"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16287 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01031+K01032"@en ; - tawny:name "16286"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate)."@en ; @@ -327387,6 +327377,16 @@ bo:16286 a owl:NamedIndividual , sybio:KOGE ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16286 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]"@en ; + rdfs:label "PCAI"@en , "E2.8.3.6A"@en ; + sybio:accession "COG1788"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16287 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01031+K01032"@en ; + tawny:name "16286"@en . + bo:15720 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "saccharopine dehydrogenase (NADP+, L-lysine forming) [EC:1.5.1.8]"@en ; rdfs:label "E1.5.1.8"@en ; @@ -327412,11 +327412,11 @@ bo:16462 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "CLOM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "Q8GHC2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q8GHC2"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -327454,6 +327454,16 @@ bo:28133 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28132 ; tawny:name "28133"@en . +bo:28221 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yrkC_RBS"@en ; + sybio:NA "ATTGCGGGGATCAAAAA"^^xsd:string ; + sybio:begin "2715510"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2715494"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31845 ; + tawny:name "28221"@en . + bo:22496 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "C05853 + C00003 <=> C00601 + C00004 + C00080"@en , "cpd:C05853 <=> cpd:C05853"@en , "Phenylethylalcohol"@en , "NAD+ oxidoreductase"@en ; @@ -327465,16 +327475,6 @@ bo:22496 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11610 ; tawny:name "22496"@en . -bo:28221 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yrkC_RBS"@en ; - sybio:NA "ATTGCGGGGATCAAAAA"^^xsd:string ; - sybio:begin "2715510"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2715494"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31845 ; - tawny:name "28221"@en . - bo:9228 a owl:NamedIndividual , bo:373 , sybio:Protein ; rdfs:comment "Probable siderophore-binding lipoprotein yfiY"@en , "BSU08440;putative iron(III) dicitrate transporter binding lipoprotein"@en ; rdfs:label "YfiY"@en , "BSU08440"@en , "yfiY"@en ; @@ -327538,21 +327538,6 @@ bo:22672 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 , bo:11614 , bo:11689 ; tawny:name "22672"@en . -bo:3679 a sybio:PositivelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; - rdfs:comment "Positive"@en ; - rdfs:label "ComK_ywpH"@en ; - sybio:NA "AAAAGTACATATTTCTTCAAAGGA"^^xsd:string ; - sybio:annotatedSequence "{AAAA}GTACA{TATT}TCTTCAAAGGA"@en ; - sybio:begin "3740710"@en ; - sybio:boundBy bo:6810 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3740687"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "11948146"^^xsd:string ; - sybio:regulationType "Positive"^^xsd:string ; - sybio:upstreamOf bo:28824 ; - tawny:name "3679"@en . - bo:9404 a sybio:Protein , owl:NamedIndividual , bo:1119 ; rdfs:comment "Uncharacterized protein yloV"@en , "putative dihydroxyacetone/glyceraldehyde kinase;BSU15840"@en ; rdfs:label "BSU15840"@en , "yloV"@en , "YloV"@en ; @@ -327571,6 +327556,21 @@ bo:9404 a sybio:Protein , owl:NamedIndividual , bo:1119 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9404"@en . +bo:3679 a sybio:PositivelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; + rdfs:comment "Positive"@en ; + rdfs:label "ComK_ywpH"@en ; + sybio:NA "AAAAGTACATATTTCTTCAAAGGA"^^xsd:string ; + sybio:annotatedSequence "{AAAA}GTACA{TATT}TCTTCAAAGGA"@en ; + sybio:begin "3740710"@en ; + sybio:boundBy bo:6810 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3740687"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "11948146"^^xsd:string ; + sybio:regulationType "Positive"^^xsd:string ; + sybio:upstreamOf bo:28824 ; + tawny:name "3679"@en . + bo:22760 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "UDP-glucose"@en , "N-hydroxy-2-phenylethanethioamideS-beta-D-glucosyltransferase"@en , "C16516 + C00029 <=> C16517 + C00015"@en , "cpd:C16516 => cpd:C16516"@en ; @@ -327698,24 +327698,13 @@ bo:21806 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:21815 ; tawny:name "21806"@en . -bo:490 a owl:Class ; - rdfs:label "COG0591"@en ; - rdfs:subClassOf bo:187 , bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0591"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "490"@en . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the exonucleolytic cleavage in either 5' to 3' or 3' to 5' direction to yield 5'-phosphomononucleotides."@en ; rdfs:label "exodeoxyribonuclease VII"@en , "endodeoxyribonuclease VII"@en , "GO:0008855"@en , "E. coli exonuclease VII"@en , "Escherichia coli exonuclease VII"@en , "exonuclease VII"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008855"^^xsd:string ; + owl:hasValue "3.1.11.6"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -327723,7 +327712,7 @@ bo:490 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.11.6"^^xsd:string ; + owl:hasValue "GO:0008855"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -327740,6 +327729,17 @@ bo:1222 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1222"@en . +bo:490 a owl:Class ; + rdfs:label "COG0591"@en ; + rdfs:subClassOf bo:187 , bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0591"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "490"@en . + bo:29050 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU11190"@en , "N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)"@en ; rdfs:label "BSU11190"@en , "argC"@en ; @@ -327852,22 +327852,13 @@ bo:4684 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4683 ; tawny:name "4684"@en . -bo:16337 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "ROOTY/SUPERROOT1 [EC:4.4.1.-]"@en ; - rdfs:label "SUR1"@en , "RTY"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16338 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11819"@en ; - tawny:name "16337"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.;"@en ; rdfs:label "UMP anabolism"@en , "GO:0006222"@en , "UMP biosynthesis"@en , "UMP synthesis"@en , "UMP formation"@en , "UMP biosynthetic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595286 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "531065 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -327875,75 +327866,75 @@ bo:16337 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487325 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "599587 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568300 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "542142 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73581 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "597374 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006222"^^xsd:string ; + owl:hasValue "73581 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602398 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "552098 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600545 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "557682 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557682 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "487325 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597374 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "536444 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531065 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "598163 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547506 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "568300 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448476 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "526175 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552098 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "547506 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517296 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "602398 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599587 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "595286 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598163 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "592686 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469606 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "517296 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542142 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "600545 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526175 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "469606 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -327951,16 +327942,25 @@ bo:16337 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536444 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "GO:0006222"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592686 \"De novo synthesis of UMP\""^^xsd:string ; + owl:hasValue "448476 \"De novo synthesis of UMP\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16337 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "ROOTY/SUPERROOT1 [EC:4.4.1.-]"@en ; + rdfs:label "SUR1"@en , "RTY"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16338 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11819"@en ; + tawny:name "16337"@en . + bo:4772 a sybio:Operon , owl:NamedIndividual ; rdfs:label "katA"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -327969,16 +327969,6 @@ bo:4772 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "katA"@en ; tawny:name "4772"@en . -bo:16425 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "novobiocin biosynthesis protein NovO"@en ; - rdfs:label "NOVO"@en ; - sybio:accession "Q9L9F3"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16424 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; - tawny:name "16425"@en . - a owl:Class ; rdfs:comment "Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction."@en ; @@ -327991,6 +327981,16 @@ bo:16425 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16425 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "novobiocin biosynthesis protein NovO"@en ; + rdfs:label "NOVO"@en ; + sybio:accession "Q9L9F3"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16424 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; + tawny:name "16425"@en . + bo:28008 a sybio:RBS , owl:NamedIndividual ; rdfs:label "cwlJ_RBS"@en ; sybio:NA "GATCAAGGGGAGGTGACGTG"^^xsd:string ; @@ -328001,6 +328001,14 @@ bo:28008 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:30823 ; tawny:name "28008"@en . +bo:4860 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yhxD"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31213 ; + sybio:operonGenes "yhxD"@en ; + tawny:name "4860"@en . + bo:16513 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "cysteamine dioxygenase [EC:1.13.11.19]"@en ; rdfs:label "E1.13.11.19"@en , "ADO"@en ; @@ -328014,14 +328022,6 @@ bo:16513 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10712"@en ; tawny:name "16513"@en . -bo:4860 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yhxD"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31213 ; - sybio:operonGenes "yhxD"@en ; - tawny:name "4860"@en . - bo:16601 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "adenylylsulfate reductase, subunit B [EC:1.8.99.2]"@en ; rdfs:label "APRB"@en ; @@ -328367,27 +328367,6 @@ bo:453 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "453"@en . -bo:17430 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "acetyl-CoA hydrolase [EC:3.1.2.1]"@en ; - rdfs:label "E3.1.2.1"@en , "ACH1"@en ; - sybio:accession "0003986"^^xsd:string , "COG0427"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17429 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01067"@en ; - tawny:name "17430"@en . - -bo:23288 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "TreBRef.: 1. J Bacteriol 1994 ;176(18) :5654-5664Ref.: 2. J Bacteriol 1996 ;178(21) :6250-6257 - irreversible"@en ; - rdfs:label "C01083 + C04261 <=> C00689 + C00615"@en , "cpd:C01083 => cpd:C01083"@en ; - sybio:accession "RN:R02780"^^xsd:string ; - sybio:catalyzedBy bo:20341 , bo:19790 , bo:19443 ; - sybio:catalyzingClass bo:19290 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11648 ; - tawny:name "23288"@en . - bo:29013 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU06600"@en ; rdfs:label "BSU06600"@en , "yerE"@en , "pcrB"@en ; @@ -328414,6 +328393,27 @@ bo:29013 a sybio:CDS , owl:NamedIndividual ; "3.0"@en ; tawny:name "29013"@en . +bo:17430 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "acetyl-CoA hydrolase [EC:3.1.2.1]"@en ; + rdfs:label "E3.1.2.1"@en , "ACH1"@en ; + sybio:accession "0003986"^^xsd:string , "COG0427"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17429 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01067"@en ; + tawny:name "17430"@en . + +bo:23288 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "TreBRef.: 1. J Bacteriol 1994 ;176(18) :5654-5664Ref.: 2. J Bacteriol 1996 ;178(21) :6250-6257 - irreversible"@en ; + rdfs:label "C01083 + C04261 <=> C00689 + C00615"@en , "cpd:C01083 => cpd:C01083"@en ; + sybio:accession "RN:R02780"^^xsd:string ; + sybio:catalyzedBy bo:20341 , bo:19790 , bo:19443 ; + sybio:catalyzingClass bo:19290 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11648 ; + tawny:name "23288"@en . + bo:541 a owl:Class ; rdfs:label "COG0764"@en ; rdfs:subClassOf bo:233 , sybio:COG ; @@ -328585,7 +328585,7 @@ bo:4823 a sybio:Operon , owl:NamedIndividual ; rdfs:label "Rhp51-dependent recombinational repair"@en , "HDR"@en , "homologous recombinational repair"@en , "GO:0000724"@en , "homology-directed repair"@en , "HRR"@en , "double-strand break repair via homologous recombination"@en , "Rad51-dependent recombinational repair"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595425 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "517588 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -328593,39 +328593,39 @@ bo:4823 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598158 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "602587 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469736 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "581716 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552288 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "547703 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517588 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "595425 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547703 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "507622 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597360 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "592630 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600681 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "536631 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526450 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "598158 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448607 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "GO:0000724"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -328633,27 +328633,27 @@ bo:4823 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557904 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "526450 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581716 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "600681 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585850 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "73888 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592630 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "597360 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507622 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "531256 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531256 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "448607 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -328661,23 +328661,23 @@ bo:4823 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000724"^^xsd:string ; + owl:hasValue "557904 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536631 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "542358 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542358 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "552288 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73888 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "585850 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602587 \"Homologous Recombination Repair\""^^xsd:string ; + owl:hasValue "469736 \"Homologous Recombination Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -328976,11 +328976,11 @@ bo:17305 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "ASLA"@en , "E3.1.6.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004065"^^xsd:string ; + owl:hasValue "COG3119"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3119"^^xsd:string ; + owl:hasValue "0004065"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -329100,6 +329100,17 @@ bo:30379 a owl:NamedIndividual , sybio:CDS ; "5.0"@en ; tawny:name "30379"@en . +bo:11579 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00240"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00240"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11579"@en . + bo:26889 a owl:NamedIndividual , bo:268 , sybio:Protein ; rdfs:comment "derived protein;Para-aminobenzoate synthase component 1"@en , "4-amino-4-deoxychorismate synthase (para-aminobenzoate synthase);BSU00740"@en ; rdfs:label "BSU00740"@en , "pabB"@en , "PabB"@en , "Pab"@en ; @@ -329119,17 +329130,6 @@ bo:26889 a owl:NamedIndividual , bo:268 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26889"@en . -bo:11579 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00240"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00240"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11579"@en . - bo:30467 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32790"@en ; rdfs:label "yusG"@en , "BSU32790"@en ; @@ -329155,21 +329155,6 @@ bo:30467 a owl:NamedIndividual , sybio:CDS ; "196.0"@en ; tawny:name "30467"@en . -bo:11667 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00590.png"@en ; - rdfs:label "Arachidonic acid metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00590"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11668 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00590"@en ; - tawny:name "11667"@en . - bo:26977 a bo:456 , sybio:Protein , bo:401 , owl:NamedIndividual ; rdfs:comment "Sensory transduction protein lytT;derived protein"@en , "BSU28920;two-component response regulator [LytS]"@en ; rdfs:label "BSU28920"@en , "LytT"@en , "lytT"@en ; @@ -329193,16 +329178,31 @@ bo:26977 a bo:456 , sybio:Protein , bo:401 , owl:NamedIndi tawny:name "26977"@en ; owl:sameAs bo:6925 . +bo:11667 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00590.png"@en ; + rdfs:label "Arachidonic acid metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00590"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:derivesFrom bo:11668 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00590"@en ; + tawny:name "11667"@en . + bo:18046 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "ferroxidase [EC:1.16.3.1]"@en ; rdfs:label "CP"@en , "E1.16.3.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004322"^^xsd:string ; + owl:hasValue "0004323"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004323"^^xsd:string ; + owl:hasValue "0004322"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -329595,11 +329595,11 @@ bo:19051 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "KDSB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1212"^^xsd:string ; + owl:hasValue "0008690"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008690"^^xsd:string ; + owl:hasValue "COG1212"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -330118,11 +330118,11 @@ bo:19102 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E2.7.1.19"@en , "PRKB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008974"^^xsd:string ; + owl:hasValue "COG0572"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0572"^^xsd:string ; + owl:hasValue "0008974"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -330507,38 +330507,38 @@ bo:13552 a sybio:Compound , owl:NamedIndividual ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: a carboxylic ester + H2O = an alcohol + a carboxylic anion."@en ; - rdfs:label "nonspecific carboxylesterase"@en , "esterase A"@en , "esterase B"@en , "serine esterase"@en , "carboxylesterase"@en , "carboxylic esterase"@en , "ali-esterase"@en , "cocaine esterase"@en , "carboxylic-ester hydrolase"@en , "carboxylic ester hydrolase"@en , "carboxylic acid esterase"@en , "vitamin A esterase"@en , "alpha-carboxylesterase"@en , "Ali-esterase"@en , "GO:0004091"@en , "triacetin esterase"@en , "carboxylate esterase"@en , "B-esterase"@en , "carboxyesterase"@en , "carboxyl ester hydrolase"@en , "procaine esterase"@en ; + rdfs:label "nonspecific carboxylesterase"@en , "esterase A"@en , "esterase B"@en , "serine esterase"@en , "carboxylesterase"@en , "carboxylic esterase"@en , "cocaine esterase"@en , "ali-esterase"@en , "carboxylic-ester hydrolase"@en , "carboxylic ester hydrolase"@en , "carboxylic acid esterase"@en , "vitamin A esterase"@en , "alpha-carboxylesterase"@en , "Ali-esterase"@en , "GO:0004091"@en , "triacetin esterase"@en , "carboxylate esterase"@en , "B-esterase"@en , "carboxyesterase"@en , "carboxyl ester hydrolase"@en , "procaine esterase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016789"^^xsd:string ; + owl:hasValue "GO:0004302"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004091"^^xsd:string ; + owl:hasValue "e0631"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.-"^^xsd:string ; + owl:hasValue "GO:0004091"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0631"^^xsd:string ; + owl:hasValue "CARBOXYLESTERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004302"^^xsd:string ; + owl:hasValue "GO:0004759"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.1"^^xsd:string ; + owl:hasValue "GO:0016789"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004759"^^xsd:string ; + owl:hasValue "3.1.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CARBOXYLESTERASE-RXN"^^xsd:string ; + owl:hasValue "3.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -330585,6 +330585,16 @@ bo:32440 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "32440"@en . +bo:13640 a sybio:Compound , owl:NamedIndividual ; + rdfs:label "Thiamine biosynthesis intermediate 6"@en , "C15815"@en ; + sybio:accession "47205140"^^xsd:string , "C15815"^^xsd:string ; + sybio:consumedBy bo:24501 , bo:24512 , bo:24503 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24503 , bo:24501 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15815"@en ; + tawny:name "13640"@en . + bo:28950 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU29740"@en ; rdfs:label "ccpA"@en , "BSU29740"@en , "graR"@en , "alsA"@en ; @@ -330613,16 +330623,6 @@ bo:28950 a sybio:CDS , owl:NamedIndividual ; "202.0"@en ; tawny:name "28950"@en . -bo:13640 a sybio:Compound , owl:NamedIndividual ; - rdfs:label "Thiamine biosynthesis intermediate 6"@en , "C15815"@en ; - sybio:accession "47205140"^^xsd:string , "C15815"^^xsd:string ; - sybio:consumedBy bo:24501 , bo:24512 , bo:24503 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24503 , bo:24501 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15815"@en ; - tawny:name "13640"@en . - bo:9957 a owl:NamedIndividual , sybio:Protein , bo:364 , bo:662 ; rdfs:comment "Probable glucitol transport protein gutA"@en , "H+-glucitol symporter;BSU06160"@en ; rdfs:label "YdjD"@en , "GutP"@en , "gutA"@en , "BSU06160"@en ; @@ -331251,11 +331251,11 @@ bo:17983 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "MTRC"@en , "E2.1.1.86C"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4061"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4061"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -331444,27 +331444,16 @@ bo:14520 a sybio:Compound , owl:NamedIndividual ; rdfs:label "iron transport"@en , "iron ion transport"@en , "GO:0006826"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015681"^^xsd:string ; + owl:hasValue "GO:0006826"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006826"^^xsd:string ; + owl:hasValue "GO:0015681"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:21296 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "C00086 + C00001 <=> C00011 + 2 C00014"@en , "Urea amidohydrolase"@en , "cpd:C00086 => cpd:C00086"@en ; - sybio:accession "RN:R00131"^^xsd:string ; - sybio:catalyzedBy bo:20225 , bo:20227 , bo:20228 ; - sybio:catalyzingClass bo:20226 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11603 , bo:11574 , bo:11749 ; - tawny:name "21296"@en . - bo:27021 a owl:NamedIndividual , sybio:MicroarrayExperiment ; rdfs:comment "B.subtilis yvaN regulon, yvaN inactivation"@en ; rdfs:label "ex0001600"@en ; @@ -331476,6 +331465,17 @@ bo:27021 a owl:NamedIndividual , sybio:MicroarrayExperimen sybio:targetExperiment "Strain: TF218 trpC2 yvaN::cat, Temperature: 37 deg C,\nMedium: LB, Harvest Point: OD600=0.5 middle logarithmic phase"@en ; tawny:name "27021"@en . +bo:21296 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "C00086 + C00001 <=> C00011 + 2 C00014"@en , "Urea amidohydrolase"@en , "cpd:C00086 => cpd:C00086"@en ; + sybio:accession "RN:R00131"^^xsd:string ; + sybio:catalyzedBy bo:20225 , bo:20227 , bo:20228 ; + sybio:catalyzingClass bo:20226 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11603 , bo:11574 , bo:11749 ; + tawny:name "21296"@en . + bo:21384 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C06195 => cpd:C06195"@en , "C02718 <=> C06195 + C00001"@en ; @@ -331505,7 +331505,7 @@ bo:21472 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "adenylate kinase"@en , "ATP:AMP phosphotransferase"@en , "adenylic kinase"@en , "adenylokinase"@en , "5'-AMP-kinase"@en , "myokinase"@en , "GO:0004017"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.3"^^xsd:string ; + owl:hasValue "GO:0004017"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -331513,7 +331513,7 @@ bo:21472 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004017"^^xsd:string ; + owl:hasValue "2.7.4.3"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -331959,15 +331959,15 @@ bo:18599 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "sulfuric ester hydrolase"@en , "GO:0008484"@en , "sulphuric ester hydrolase"@en , "sulfatase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008484"^^xsd:string ; + owl:hasValue "3.1.6.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARYLSULFAT-RXN"^^xsd:string ; + owl:hasValue "GO:0008484"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.6.-"^^xsd:string ; + owl:hasValue "ARYLSULFAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -332059,11 +332059,11 @@ bo:15136 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "EHHADH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003857"^^xsd:string ; + owl:hasValue "0004300"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004300"^^xsd:string ; + owl:hasValue "0003857"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -332368,6 +332368,16 @@ bo:10592 a bo:410 , bo:385 , owl:NamedIndividual , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "10592"@en . +bo:25990 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C02370 <=> cpd:C02370"@en , "C00002 + C02370 + C00010 <=> C00020 + C00013 + C06387"@en , "4-Chlorobenzoate"@en , "CoA ligase"@en ; + sybio:accession "RN:R03932"^^xsd:string ; + sybio:catalyzingClass bo:25991 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25990"@en . + bo:10680 a owl:NamedIndividual , bo:1828 , bo:963 , bo:1173 , sybio:Protein ; rdfs:comment "BSU40360;putative membrane serine protease Do"@en , "Uncharacterized serine protease yyxA"@en ; rdfs:label "HtrC"@en , "BSU40360"@en , "YyxA"@en , "yyxA"@en , "YycK"@en ; @@ -332386,16 +332396,6 @@ bo:10680 a owl:NamedIndividual , bo:1828 , bo:963 , bo:117 sybio:taxId "[224308, 1423]"@en ; tawny:name "10680"@en . -bo:25990 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C02370 <=> cpd:C02370"@en , "C00002 + C02370 + C00010 <=> C00020 + C00013 + C06387"@en , "4-Chlorobenzoate"@en , "CoA ligase"@en ; - sybio:accession "RN:R03932"^^xsd:string ; - sybio:catalyzingClass bo:25991 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25990"@en . - bo:6997 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU21960"@en ; rdfs:label "BSU21960"@en , "YpeQ"@en ; @@ -332413,6 +332413,18 @@ bo:6997 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "6997"@en . + + a owl:Class ; + rdfs:comment "The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.;"@en ; + rdfs:label "respiratory chain complex IV assembly"@en , "cytochrome c oxidase complex assembly"@en , "cytochrome c oxidase biogenesis"@en , "GO:0008535"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0008535"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:170 a owl:Class ; rdfs:comment "Replication, recombination and repair"@en ; rdfs:label "L"@en ; @@ -332426,18 +332438,6 @@ bo:170 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "170"@en . - - a owl:Class ; - rdfs:comment "The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.;"@en ; - rdfs:label "respiratory chain complex IV assembly"@en , "cytochrome c oxidase complex assembly"@en , "cytochrome c oxidase biogenesis"@en , "GO:0008535"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008535"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:18738 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "lactosylceramide 4-alpha-galactosyltransferase [EC:2.4.1.228]"@en ; rdfs:label "A4GALT"@en ; @@ -332722,15 +332722,15 @@ bo:16016 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "GO:0003991"@en , "N-acetylglutamic 5-phosphotransferase"@en , "acetylglutamate phosphokinase"@en , "acetylglutamate kinase"@en , "N-acetylglutamate phosphokinase"@en , "N-acetylglutamate 5-phosphotransferase"@en , "N-acetylglutamate kinase"@en , "ATP:N-acetyl-L-glutamate 5-phosphotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.2.8"^^xsd:string ; + owl:hasValue "ACETYLGLUTKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003991"^^xsd:string ; + owl:hasValue "2.7.2.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETYLGLUTKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0003991"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -332784,6 +332784,18 @@ bo:16104 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00501"@en ; tawny:name "16104"@en . +bo:25777 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.99.6"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.99.6"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25777"@en . + bo:10467 a owl:NamedIndividual , sybio:Protein , bo:1319 ; rdfs:comment "BSU32280;putative phosphatidylglycerophosphatase A"@en , "Uncharacterized protein yutG"@en ; rdfs:label "yutG"@en , "YutG"@en , "BSU32280"@en ; @@ -332802,18 +332814,6 @@ bo:10467 a owl:NamedIndividual , sybio:Protein , bo:1319 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10467"@en . -bo:25777 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.99.6"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.99.6"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25777"@en . - bo:5193 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yppQ_terminator"@en ; sybio:NA "AAAAACAGGCCTGCCTAATGGATAGACAGGCTTGTTTTTATGCCTTTTT"^^xsd:string ; @@ -332826,6 +332826,15 @@ bo:5193 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5192 ; tawny:name "5193"@en . +bo:25865 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "unclear reaction - reversible"@en ; + rdfs:label "cpd:C11691 <=> cpd:C11691"@en , "C11691 <=> C09244"@en ; + sybio:accession "RN:R05853"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25865"@en . + bo:10555 a sybio:Protein , bo:1816 , owl:NamedIndividual ; rdfs:comment "BSU36310;single-strand DNA-binding protein"@en , "Single-stranded DNA-binding protein ssbB"@en ; rdfs:label "SsbB"@en , "YwpH"@en , "ssbB"@en , "BSU36310"@en ; @@ -332844,15 +332853,6 @@ bo:10555 a sybio:Protein , bo:1816 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10555"@en . -bo:25865 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "unclear reaction - reversible"@en ; - rdfs:label "cpd:C11691 <=> cpd:C11691"@en , "C11691 <=> C09244"@en ; - sybio:accession "RN:R05853"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25865"@en . - bo:5281 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ypuE-ribDEAHT_terminator2"@en ; sybio:NA "ATTAAGCAGAGGCTGTGATCAGTCTCTGCTTTTTTTTCTGCGTT"^^xsd:string ; @@ -333147,23 +333147,6 @@ bo:30184 a sybio:CDS , owl:NamedIndividual ; "50.0"@en ; tawny:name "30184"@en . -bo:11384 a owl:NamedIndividual , sybio:Protein , bo:548 ; - rdfs:comment "KipI antagonist"@en , "putative hydrolase subunit antagonist of KipI;BSU04090;"@en ; - rdfs:label "kipA"@en , "KipA"@en , "BSU04090"@en ; - sybio:AA "MKVLKPGLLTTVQDIGRTGYQKYGVLASGAMDTVSLRIANLLIGNGENEAGLEITMMGPGPSFHFSKQTLIAVTGADFTLRINDEEAPLWKPVLIKENSTVSFGPCKLGSRAYLAAAGGIEVPAVMESKSTYVRGSIGGLHGRALQKEDELNIGEMSALSQTILSRLSSQLGKQGFAAPKWSVSRGRFLPLKKNPVIRVLEGKQFAFFTEESKTRFYEEAFRVTPQSDRMGYRLKGEPLELKAPLEMVSEAVSFGTVQVPPDGNPIILLADRQTTGGYPRIAHIISADLPIVSQIMPGEHVQFEPVSLQEAEALAVEREQHIKELKTRMKMEWLT"@en ; - sybio:accession "BSU04090"^^xsd:string , "Q7WY77"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:28654 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "36697.94"^^xsd:string ; - sybio:pI "7.749229"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:relatedTo bo:26431 , bo:26510 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11384"@en . - bo:26694 a owl:NamedIndividual , bo:486 , bo:487 , sybio:Protein ; rdfs:comment "Cephalosporin C deacetylase;derived protein"@en , "BSU03180;S-deacylase;"@en ; rdfs:label "BSU03180"@en , "Cah"@en , "cah"@en ; @@ -333183,24 +333166,22 @@ bo:26694 a owl:NamedIndividual , bo:486 , bo:487 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "26694"@en . -bo:11472 a sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Putative spore germination protein yfkR"@en , "putative spore germination protein;BSU07780"@en ; - rdfs:label "BSU07780"@en , "YfkR"@en , "yfkR"@en ; - sybio:AA "MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEMIRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVISTVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH"@en ; - sybio:accession "O35028"^^xsd:string , "BSU07780"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; +bo:11384 a owl:NamedIndividual , sybio:Protein , bo:548 ; + rdfs:comment "KipI antagonist"@en , "putative hydrolase subunit antagonist of KipI;BSU04090;"@en ; + rdfs:label "kipA"@en , "KipA"@en , "BSU04090"@en ; + sybio:AA "MKVLKPGLLTTVQDIGRTGYQKYGVLASGAMDTVSLRIANLLIGNGENEAGLEITMMGPGPSFHFSKQTLIAVTGADFTLRINDEEAPLWKPVLIKENSTVSFGPCKLGSRAYLAAAGGIEVPAVMESKSTYVRGSIGGLHGRALQKEDELNIGEMSALSQTILSRLSSQLGKQGFAAPKWSVSRGRFLPLKKNPVIRVLEGKQFAFFTEESKTRFYEEAFRVTPQSDRMGYRLKGEPLELKAPLEMVSEAVSFGTVQVPPDGNPIILLADRQTTGGYPRIAHIISADLPIVSQIMPGEHVQFEPVSLQEAEALAVEREQHIKELKTRMKMEWLT"@en ; + sybio:accession "BSU04090"^^xsd:string , "Q7WY77"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32150 ; + sybio:encodedBy bo:28654 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.9 : Germination"^^xsd:string ; sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "42794.735"^^xsd:string ; - sybio:pI "9.333885"^^xsd:string ; - sybio:productType "pf : putative factor"^^xsd:string ; - sybio:relatedTo bo:6901 , bo:11093 , bo:7039 , bo:11314 , bo:9099 , bo:9559 , bo:6924 , bo:11509 , bo:11399 , bo:11128 , bo:9558 , bo:6913 , bo:9590 , bo:9591 , bo:10271 , bo:9417 , bo:9760 , bo:9541 , bo:9536 , bo:9370 , bo:9557 , bo:9644 , bo:10977 ; + sybio:molecularWeight "36697.94"^^xsd:string ; + sybio:pI "7.749229"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:relatedTo bo:26431 , bo:26510 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11472"@en . + tawny:name "11384"@en . a owl:Class ; @@ -333208,19 +333189,19 @@ bo:11472 a sybio:Protein , owl:NamedIndividual ; rdfs:label "enterobactin biosynthesis"@en , "enterobactin synthetase"@en , "enterobactin synthesis"@en , "enterochelin biosynthesis"@en , "enterobactin biosynthetic process peptide modification"@en , "enterobactin biosynthetic process"@en , "GO:0009239"@en , "enterobactin biosynthetic process peptide formation"@en , "enterobactin anabolism"@en , "enterochelin biosynthetic process"@en , "enterobactin formation"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031192"^^xsd:string ; + owl:hasValue "GO:0009239"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ENTBACSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0031191"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0031191"^^xsd:string ; + owl:hasValue "ENTBACSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009239"^^xsd:string ; + owl:hasValue "GO:0031192"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -333271,16 +333252,24 @@ bo:26782 a sybio:Protein , owl:NamedIndividual , bo:1808 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26782"@en . -bo:11560 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00053"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00053"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11560"@en . +bo:11472 a sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Putative spore germination protein yfkR"@en , "putative spore germination protein;BSU07780"@en ; + rdfs:label "BSU07780"@en , "YfkR"@en , "yfkR"@en ; + sybio:AA "MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQYRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSHRRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEMIRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFKKDRLMDIFKDEHMTAALMLLNQARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGKLSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVISTVHRLQKLKADPAGFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH"@en ; + sybio:accession "O35028"^^xsd:string , "BSU07780"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32150 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.9 : Germination"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "42794.735"^^xsd:string ; + sybio:pI "9.333885"^^xsd:string ; + sybio:productType "pf : putative factor"^^xsd:string ; + sybio:relatedTo bo:6901 , bo:11093 , bo:7039 , bo:11314 , bo:9099 , bo:9559 , bo:6924 , bo:11509 , bo:11399 , bo:11128 , bo:9558 , bo:6913 , bo:9590 , bo:9591 , bo:10271 , bo:9417 , bo:9760 , bo:9541 , bo:9536 , bo:9370 , bo:9557 , bo:9644 , bo:10977 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11472"@en . bo:30360 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU29870"@en ; @@ -333307,6 +333296,17 @@ bo:30360 a owl:NamedIndividual , sybio:CDS ; "24.0"@en ; tawny:name "30360"@en . +bo:11560 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00053"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00053"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11560"@en . + bo:26870 a owl:NamedIndividual , sybio:Protein , bo:1912 ; rdfs:comment "BSU40420;adenylosuccinate synthetase"@en , "derived protein;Adenylosuccinate synthetase"@en ; rdfs:label "BSU40420"@en , "purA"@en , "PurA"@en ; @@ -333348,11 +333348,11 @@ bo:19618 a owl:NamedIndividual , owl:Class , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.19-RXN"^^xsd:string ; + owl:hasValue "2.5.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.19"^^xsd:string ; + owl:hasValue "2.5.1.19-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -333382,18 +333382,18 @@ bo:24061 a sybio:Reaction , owl:NamedIndividual ; a owl:Class , owl:NamedIndividual , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor."@en ; - rdfs:label "NADH diaphorase"@en , "diphosphopyrinase"@en , "NADH dehydrogenase"@en , "NADH:cytochrome c oxidoreductase"@en , "beta-NADH dehydrogenase dinucleotide"@en , "NADH hydrogenase"@en , "type 1 dehydrogenase"@en , "diaphorase"@en , "diphosphopyridine diaphorase"@en , "DPNH diaphorase"@en , "NADH-menadione oxidoreductase"@en , "NADH2 dehydrogenase"@en , "reduced diphosphopyridine nucleotide diaphorase"@en , "NADH oxidoreductase"@en , "GO:0003954"@en , "dihydrocodehydrogenase I dehydrogenase"@en , "oxidoreductase"@en , "dihydronicotinamide adenine dinucleotide dehydrogenase"@en , "type I dehydrogenase"@en , "NADH:acceptor oxidoreductase"@en , "cytochrome c reductase"@en ; + rdfs:label "NADH diaphorase"@en , "diphosphopyrinase"@en , "NADH dehydrogenase"@en , "NADH:cytochrome c oxidoreductase"@en , "beta-NADH dehydrogenase dinucleotide"@en , "NADH hydrogenase"@en , "type 1 dehydrogenase"@en , "diphosphopyridine diaphorase"@en , "diaphorase"@en , "DPNH diaphorase"@en , "NADH-menadione oxidoreductase"@en , "NADH2 dehydrogenase"@en , "reduced diphosphopyridine nucleotide diaphorase"@en , "NADH oxidoreductase"@en , "GO:0003954"@en , "dihydrocodehydrogenase I dehydrogenase"@en , "oxidoreductase"@en , "dihydronicotinamide adenine dinucleotide dehydrogenase"@en , "type I dehydrogenase"@en , "NADH:acceptor oxidoreductase"@en , "cytochrome c reductase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NADH-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.6.99.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003954"^^xsd:string ; + owl:hasValue "NADH-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.99.3"^^xsd:string ; + owl:hasValue "GO:0003954"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -333598,11 +333598,11 @@ bo:32956 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004783"^^xsd:string ; + owl:hasValue "1.8.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.1.2"^^xsd:string ; + owl:hasValue "GO:0004783"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -333960,14 +333960,14 @@ bo:24024 a owl:NamedIndividual , sybio:Reaction ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.;"@en ; - rdfs:label "untwisting enzyme"@en , "GO:0003917"@en , "swivelase"@en , "type I DNA topoisomerase"@en , "nicking-closing enzyme"@en , "DNA topoisomerase type I"@en , "relaxing enzyme"@en , "DNA topoisomerase I"@en , "deoxyribonucleate topoisomerase"@en , "omega-protein"@en , "topoisomerase"@en , "type I topoisomerase"@en ; + rdfs:label "GO:0003917"@en , "swivelase"@en , "type I DNA topoisomerase"@en , "nicking-closing enzyme"@en , "DNA topoisomerase type I"@en , "relaxing enzyme"@en , "DNA topoisomerase I"@en , "deoxyribonucleate topoisomerase"@en , "omega-protein"@en , "topoisomerase"@en , "type I topoisomerase"@en , "untwisting enzyme"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.99.1.2"^^xsd:string ; + owl:hasValue "GO:0003917"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003917"^^xsd:string ; + owl:hasValue "5.99.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -334250,7 +334250,7 @@ bo:32919 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13473 \"propionyl-CoA carboxylase activity\""^^xsd:string ; + owl:hasValue "PROPIONYL-COA-CARBOXY-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -334258,7 +334258,7 @@ bo:32919 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PROPIONYL-COA-CARBOXY-RXN"^^xsd:string ; + owl:hasValue "13473 \"propionyl-CoA carboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -334270,11 +334270,11 @@ bo:32919 a sybio:CDS , owl:NamedIndividual ; rdfs:label "6 2 3-butanediyltransferase"@en , "riboflavine synthase"@en , "riboflavin synthase"@en , "light riboflavin synthase"@en , "heavy riboflavin synthase"@en , "GO:0004746"@en , "riboflavine synthetase"@en , "riboflavin synthetase"@en , "vitamin B2 synthase"@en , "lumazine synthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBOFLAVIN-SYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004746"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004746"^^xsd:string ; + owl:hasValue "RIBOFLAVIN-SYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -334294,11 +334294,11 @@ bo:32919 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRYPSYN-RXN"^^xsd:string ; + owl:hasValue "4.2.1.20"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.20"^^xsd:string ; + owl:hasValue "TRYPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -334485,11 +334485,11 @@ bo:9674 a bo:1504 , sybio:Protein , owl:NamedIndividual ; rdfs:label "cellular component unknown"@en , "cellular_component"@en , "GO:0005575"@en , "cellular component"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005575"^^xsd:string ; + owl:hasValue "GO:0008372"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008372"^^xsd:string ; + owl:hasValue "GO:0005575"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -334783,11 +334783,11 @@ bo:15865 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.5.1.11"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008953"^^xsd:string ; + owl:hasValue "COG3049"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3049"^^xsd:string ; + owl:hasValue "0008953"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -335332,16 +335332,6 @@ bo:15916 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796"@en ; tawny:name "15916"@en . -bo:16658 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "glutathione S-transferase [EC:2.5.1.18]"@en ; - rdfs:label "GST"@en , "E2.5.1.18"@en ; - sybio:accession "COG0625"^^xsd:string , "0004364"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16659 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00799+K04097"@en ; - tawny:name "16658"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the breakdown of glutamine, 2-amino-4-carbamoylbutanoic acid."@en ; @@ -335354,15 +335344,15 @@ bo:16658 a owl:NamedIndividual , sybio:KOGE ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16746 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "amylosucrase [EC:2.4.1.4]"@en ; - rdfs:label "E2.4.1.4"@en ; - sybio:accession "0047669"^^xsd:string ; +bo:16658 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "glutathione S-transferase [EC:2.5.1.18]"@en ; + rdfs:label "GST"@en , "E2.5.1.18"@en ; + sybio:accession "COG0625"^^xsd:string , "0004364"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16745 ; + sybio:encodes bo:16659 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05341"@en ; - tawny:name "16746"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00799+K04097"@en ; + tawny:name "16658"@en . a owl:Class ; @@ -335370,47 +335360,47 @@ bo:16746 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "fatty acid metabolism"@en , "fatty acid metabolic process"@en , "GO:0006631"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "589183 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "GO:0006631"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006631"^^xsd:string ; + owl:hasValue "539444 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "533950 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "458217 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Fatty_acid_metabolism"^^xsd:string ; + owl:hasValue "589183 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "76466 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "521604 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "539444 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "76466 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "512469 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "528801 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "575739 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "533950 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "458217 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "601486 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "497235 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "435828 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "477703 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "497235 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -335418,32 +335408,42 @@ bo:16746 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "549898 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "555052 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "521604 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "549898 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "435828 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "Fatty_acid_metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "528801 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "512469 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "601486 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "575739 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "555052 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; + owl:hasValue "477703 \"CYP4A11 omega-hydroxylates laurate\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16746 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "amylosucrase [EC:2.4.1.4]"@en ; + rdfs:label "E2.4.1.4"@en ; + sybio:accession "0047669"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16745 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05341"@en ; + tawny:name "16746"@en . + bo:28329 a owl:NamedIndividual , sybio:Shim ; rdfs:label "yqeZ_RBS_upstream"@en ; sybio:NA "AAGGCACTTATTATAAAAG"^^xsd:string ; @@ -335696,11 +335696,11 @@ bo:17575 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "ATOA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2057"^^xsd:string ; + owl:hasValue "0008775"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008775"^^xsd:string ; + owl:hasValue "COG2057"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -335755,16 +335755,6 @@ bo:686 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "686"@en . -bo:17663 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "succinyl-CoA synthetase beta subunit [EC:6.2.1.4 6.2.1.5]"@en ; - rdfs:label "LSC2"@en ; - sybio:accession "0004775"^^xsd:string , "0004776"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:17664 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01899+K01900"@en ; - tawny:name "17663"@en . - bo:29246 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU02300"@en ; rdfs:label "BSU02300"@en , "ybfN"@en ; @@ -335790,6 +335780,16 @@ bo:29246 a owl:NamedIndividual , sybio:CDS ; "10.0"@en ; tawny:name "29246"@en . +bo:17663 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "succinyl-CoA synthetase beta subunit [EC:6.2.1.4 6.2.1.5]"@en ; + rdfs:label "LSC2"@en ; + sybio:accession "0004775"^^xsd:string , "0004776"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:17664 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01899+K01900"@en ; + tawny:name "17663"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: propanoyl-CoA + H2O + oxaloacetate = (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate + CoA."@en ; @@ -335800,11 +335800,11 @@ bo:29246 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.3.5"^^xsd:string ; + owl:hasValue "2-METHYLCITRATE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2-METHYLCITRATE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "2.3.3.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -336022,255 +336022,255 @@ bo:23873 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "tRNA aminoacylation for protein translation"@en , "GO:0006418"@en , "tRNA charging"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600607 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "542323 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469900 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "599699 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552246 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "592585 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592584 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "547663 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006418"^^xsd:string ; + owl:hasValue "469898 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585827 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "379726 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592583 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "598147 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597341 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "448784 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536595 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "536596 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568464 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "526406 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448785 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "598149 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557865 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "448783 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487605 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "536595 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581674 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "597341 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599700 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "581675 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597340 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "585829 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598147 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "597343 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595396 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "487607 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526405 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "599700 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552248 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "531228 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542322 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "448785 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487607 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "602508 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585829 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "526407 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602508 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "542322 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448783 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "469900 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581675 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "600609 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526406 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "595396 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531225 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "557865 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536596 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "595397 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448784 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "568464 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517538 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "592583 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531228 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "585827 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "379726 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "507560 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547662 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "GO:0006418"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507562 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "598146 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469898 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "592584 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542323 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "552246 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557867 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "507562 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547661 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "585826 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599699 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "469899 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547663 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "600607 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598149 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "581674 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487606 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "487605 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "379724 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "517538 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568463 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "531226 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600609 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "552248 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552247 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "595398 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRNA-CHARGING-PWY"^^xsd:string ; + owl:hasValue "557867 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517540 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "568465 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568465 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "602511 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542321 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "517539 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592585 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "600606 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536597 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "599702 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597343 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "547661 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507561 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "379716 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "379716 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "568463 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599702 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "379724 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526407 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "507561 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598146 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "536597 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531226 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "597340 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600606 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "542321 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507560 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "517540 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602511 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "552247 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -336278,31 +336278,31 @@ bo:23873 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595398 \"Mitochondrial tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "557866 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595397 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "531225 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469899 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "602509 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517539 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "487606 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602509 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "547662 \"tRNA Aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585826 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; + owl:hasValue "526405 \"Cytosolic tRNA aminoacylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557866 \"tRNA Aminoacylation\""^^xsd:string ; + owl:hasValue "TRNA-CHARGING-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -336458,11 +336458,11 @@ bo:18580 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "FDFT1"@en , "E2.5.1.21"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1562"^^xsd:string ; + owl:hasValue "0004310"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004310"^^xsd:string ; + owl:hasValue "COG1562"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -337268,6 +337268,16 @@ bo:10096 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10096"@en . +bo:25494 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label " => "@en , "NAD+ oxidoreductase"@en , "C00376 + C00003 + C00001 <=> C00777 + C00004 + C00080"@en , "retinal"@en ; + sybio:accession "RN:R02123"^^xsd:string ; + sybio:catalyzingClass bo:25495 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25494"@en . + bo:10184 a sybio:Protein , bo:385 , owl:NamedIndividual ; rdfs:comment "Uncharacterized N-acetyltransferase yobR"@en , "putative acetyltransferase;BSU19060"@en ; rdfs:label "yobR"@en , "YobR"@en , "BSU19060"@en ; @@ -337286,15 +337296,16 @@ bo:10184 a sybio:Protein , bo:385 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10184"@en . -bo:25494 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label " => "@en , "NAD+ oxidoreductase"@en , "C00376 + C00003 + C00001 <=> C00777 + C00004 + C00080"@en , "retinal"@en ; - sybio:accession "RN:R02123"^^xsd:string ; - sybio:catalyzingClass bo:25495 ; +bo:25582 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "gl:G00001 <=> gl:G00001"@en , "G10610 + G00001 <=> G10619 + G00002"@en ; + sybio:accession "RN:R05970"^^xsd:string ; + sybio:catalyzedBy bo:18697 , bo:18694 ; + sybio:catalyzingClass bo:25583 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25494"@en . + tawny:name "25582"@en . bo:10272 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU23402;spore germinant protein;"@en , "Stage V sporulation protein AEB"@en ; @@ -337311,17 +337322,6 @@ bo:10272 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10272"@en . -bo:25582 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "gl:G00001 <=> gl:G00001"@en , "G10610 + G00001 <=> G10619 + G00002"@en ; - sybio:accession "RN:R05970"^^xsd:string ; - sybio:catalyzedBy bo:18697 , bo:18694 ; - sybio:catalyzingClass bo:25583 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25582"@en . - bo:6589 a owl:NamedIndividual , sybio:TF ; rdfs:comment "transcriptional regulator (DeoR family)"@en , "a negative regulator (presumably a repressor) which exists immediately upstream of the iol operon in the opposite direction"@en ; rdfs:label "BSU39770"@en , "IolR"@en ; @@ -337344,11 +337344,11 @@ bo:6589 a owl:NamedIndividual , sybio:TF ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008127"^^xsd:string ; + owl:hasValue "e0559"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0559"^^xsd:string ; + owl:hasValue "GO:0008127"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -337358,6 +337358,18 @@ bo:6589 a owl:NamedIndividual , sybio:TF ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:25670 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.174"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.174"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25670"@en . + bo:10360 a sybio:Protein , bo:929 , owl:NamedIndividual , bo:1532 ; rdfs:comment "BSU27540;putative enzyme of sulfur-containing coenzyme synthesis"@en , "Uncharacterized protein yrvM"@en ; rdfs:label "yrvM"@en , "YrvM"@en , "BSU27540"@en ; @@ -337375,18 +337387,6 @@ bo:10360 a sybio:Protein , bo:929 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "10360"@en . -bo:25670 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.174"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.174"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25670"@en . - bo:6677 a owl:NamedIndividual , sybio:TF ; rdfs:comment "two-component response regulator [YesM]"@en ; rdfs:label "BSU06960"@en , "YesN"@en ; @@ -337430,11 +337430,11 @@ bo:18418 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "TESB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1946"^^xsd:string ; + owl:hasValue "0016291"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016291"^^xsd:string ; + owl:hasValue "COG1946"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -337636,11 +337636,11 @@ bo:19159 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "xylan 1,4-beta-xylosidase"@en , "1 4-beta-D-xylan xylohydrolase"@en , "exo-1 4-beta-D-xylosidase"@en , "exo-1 4-xylosidase"@en , "beta-xylosidase"@en , "exo-1 4-beta-xylosidase"@en , "xylobiase"@en , "beta-D-xylopyranosidase"@en , "GO:0009044"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009044"^^xsd:string ; + owl:hasValue "3.2.1.37-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.37-RXN"^^xsd:string ; + owl:hasValue "GO:0009044"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -338203,25 +338203,6 @@ bo:26286 a sybio:Protein , owl:NamedIndividual , bo:432 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26286"@en . -bo:11064 a owl:NamedIndividual , sybio:Protein , bo:1777 ; - rdfs:comment "BSU35250;cell-division ABC transporter;"@en , "Cell division protein ftsX"@en ; - rdfs:label "FtsX"@en , "ftsX"@en , "BSU35250"@en ; - sybio:AA "MIKILGRHLRESFKSLGRNTWMTFASISAVTVTLILVGVFLVIMLNLNNMATNAEKQVEIKVLIDLTADQKAQDKLQNDIKELKGIQSVTFSSKEKELDQLVDSFGDSGKSLTMKDQENPLNDAFVVKTTDPHDTPNVAKKIEKMDHVYKVTYGKEEVSRLFKVVGVSRNIGIALIIGLVFTAMFLISNTIKITIFARRKEIEIMKLVGATNWFIRWPFFLEGLLLGVFGSVIPIALVLSTYQYVIGWVVPKVQGSFVSLLPYNPFVFQVSLVLIAIGAVIGVWGSLTSIRKFLRV"@en ; - sybio:accession "O34876"^^xsd:string , "BSU35250"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32283 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.7 : Cell division"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "33097.755"^^xsd:string ; - sybio:pI "9.578697"^^xsd:string ; - sybio:productType "cp : cell process"^^xsd:string ; - sybio:relatedTo bo:11065 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11064"@en . - bo:26374 a bo:661 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "L-threonine 3-dehydrogenase;derived protein"@en , "threonine 3-dehydrogenase;BSU16990"@en ; rdfs:label "tdh"@en , "BSU16990"@en , "Tdh"@en ; @@ -338242,23 +338223,24 @@ bo:26374 a bo:661 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26374"@en . -bo:11152 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Uncharacterized protein ywcB"@en , "putative phage protein (superinfection immunity);BSU38230"@en ; - rdfs:label "BSU38230"@en , "YwcB"@en , "ywcB"@en , "Ipa-32r"@en ; - sybio:AA "MYKADYKQIAATPSFQAFLKQKRAFIVPSAIFFFVFYFSLPVLTSYFTFLNAPAIGAVSWAWLFAIAQFAMTWILSTVYSRRAAHFDKYVSALKEDLKGEQT"@en ; - sybio:accession "BSU38230"^^xsd:string , "P39600"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; +bo:11064 a owl:NamedIndividual , sybio:Protein , bo:1777 ; + rdfs:comment "BSU35250;cell-division ABC transporter;"@en , "Cell division protein ftsX"@en ; + rdfs:label "FtsX"@en , "ftsX"@en , "BSU35250"@en ; + sybio:AA "MIKILGRHLRESFKSLGRNTWMTFASISAVTVTLILVGVFLVIMLNLNNMATNAEKQVEIKVLIDLTADQKAQDKLQNDIKELKGIQSVTFSSKEKELDQLVDSFGDSGKSLTMKDQENPLNDAFVVKTTDPHDTPNVAKKIEKMDHVYKVTYGKEEVSRLFKVVGVSRNIGIALIIGLVFTAMFLISNTIKITIFARRKEIEIMKLVGATNWFIRWPFFLEGLLLGVFGSVIPIALVLSTYQYVIGWVVPKVQGSFVSLLPYNPFVFQVSLVLIAIGAVIGVWGSLTSIRKFLRV"@en ; + sybio:accession "O34876"^^xsd:string , "BSU35250"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30640 ; + sybio:encodedBy bo:32283 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "11714.275"^^xsd:string ; - sybio:pI "9.645988"^^xsd:string ; - sybio:productType "h : extrachromosomal origin"^^xsd:string ; - sybio:relatedTo bo:11153 ; + sybio:hasRole "1.7 : Cell division"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "33097.755"^^xsd:string ; + sybio:pI "9.578697"^^xsd:string ; + sybio:productType "cp : cell process"^^xsd:string ; + sybio:relatedTo bo:11065 ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11152"@en . + tawny:name "11064"@en . bo:26462 a sybio:Protein , bo:268 , owl:NamedIndividual ; rdfs:comment "Anthranilate synthase component I;Anthranilate synthase;Anthranilate synthase component 1;derived protein"@en , "anthranilate synthase;BSU22680"@en ; @@ -338280,17 +338262,35 @@ bo:26462 a sybio:Protein , bo:268 , owl:NamedIndividual ; sybio:taxId "224308"@en ; tawny:name "26462"@en . +bo:11152 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Uncharacterized protein ywcB"@en , "putative phage protein (superinfection immunity);BSU38230"@en ; + rdfs:label "BSU38230"@en , "YwcB"@en , "ywcB"@en , "Ipa-32r"@en ; + sybio:AA "MYKADYKQIAATPSFQAFLKQKRAFIVPSAIFFFVFYFSLPVLTSYFTFLNAPAIGAVSWAWLFAIAQFAMTWILSTVYSRRAAHFDKYVSALKEDLKGEQT"@en ; + sybio:accession "BSU38230"^^xsd:string , "P39600"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30640 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "11714.275"^^xsd:string ; + sybio:pI "9.645988"^^xsd:string ; + sybio:productType "h : extrachromosomal origin"^^xsd:string ; + sybio:relatedTo bo:11153 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11152"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: S-adenosyl-L-methionine + DNA adenine = S-adenosyl-L-homocysteine + DNA 6-methylaminopurine.;"@en ; rdfs:label "site-specific DNA-methyltransferase (adenine-specific)"@en , "modification methylase"@en , "restriction-modification system"@en , "DNA adenine methylase"@en , "N-6 adenine-specific DNA methylase"@en , "GO:0009007"@en , "EcoRI methylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.72"^^xsd:string ; + owl:hasValue "2.1.1.72-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.72-RXN"^^xsd:string ; + owl:hasValue "2.1.1.72"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -338435,7 +338435,7 @@ bo:31807 a sybio:CDS , owl:NamedIndividual ; rdfs:label "glutaminylpeptide gamma-glutamyltransferase"@en , "tissue transglutaminase"@en , "R-glutaminyl-peptide:amine gamma-glutamyl transferase"@en , "factor XIIIa"@en , "fibrin stabilizing factor"@en , "fibrinoligase"@en , "protein-glutamine gamma-glutamyltransferase"@en , "protein-glutamine:amine gamma-glutamyltransferase"@en , "TGase"@en , "polyamine transglutaminase"@en , "GO:0003810"@en , "transglutaminase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003810"^^xsd:string ; + owl:hasValue "2.3.2.13-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -338443,7 +338443,7 @@ bo:31807 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.2.13-RXN"^^xsd:string ; + owl:hasValue "GO:0003810"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -338598,11 +338598,11 @@ bo:13836 a owl:NamedIndividual , sybio:Compound ; rdfs:label "P-protein"@en , "glycine:lipoylprotein oxidoreductase"@en , "glycine decarboxylase"@en , "glycine:H-protein-lipoyllysine oxidoreductase"@en , "glycine-cleavage complex"@en , "glycine-cleavage complex P-protein"@en , "protein P1"@en , "GO:0004375"@en , "glycine cleavage system P-protein"@en , "glycine dehydrogenase (decarboxylating)"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GCVP-RXN"^^xsd:string ; + owl:hasValue "GO:0004375"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004375"^^xsd:string ; + owl:hasValue "GCVP-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -338684,15 +338684,15 @@ bo:32812 a owl:NamedIndividual , sybio:CDS ; rdfs:label "flagellum"@en , "GO:0019861"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Flagellum"^^xsd:string ; + owl:hasValue "GO:0019861"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008223"^^xsd:string ; + owl:hasValue "Flagellum"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019861"^^xsd:string ; + owl:hasValue "GO:0008223"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -339187,15 +339187,15 @@ bo:2888 a owl:NamedIndividual , sybio:Promoter , sybio:Co rdfs:label "quinolinic phosphoribosyltransferase"@en , "nicotinate-nucleotide pyrophosphorylase"@en , "quinolinate phosphoribosyltransferase"@en , "QAPRTase"@en , "nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase"@en , "nicotinate-nucleotide diphosphorylase (carboxylating)"@en , "NAD pyrophosphorylase"@en , "quinolinic acid phosphoribosyltransferase"@en , "nicotinate mononucleotide pyrophosphorylase"@en , "GO:0004514"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "QUINOPRIBOTRANS-RXN"^^xsd:string ; + owl:hasValue "2.4.2.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12286 \"nicotinate-nucleotide diphosphorylase (carboxylating) activity\""^^xsd:string ; + owl:hasValue "QUINOPRIBOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.19"^^xsd:string ; + owl:hasValue "12286 \"nicotinate-nucleotide diphosphorylase (carboxylating) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -339241,15 +339241,15 @@ bo:15494 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTATHIONE-PEROXIDASE-RXN"^^xsd:string ; + owl:hasValue "GO:0016224"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016224"^^xsd:string ; + owl:hasValue "1.11.1.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.9"^^xsd:string ; + owl:hasValue "GLUTATHIONE-PEROXIDASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -339274,11 +339274,11 @@ bo:15670 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E2.6.1.18"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0161"^^xsd:string ; + owl:hasValue "0016223"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016223"^^xsd:string ; + owl:hasValue "COG0161"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -339645,11 +339645,11 @@ bo:15457 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "AGXT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004760"^^xsd:string ; + owl:hasValue "0008453"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008453"^^xsd:string ; + owl:hasValue "0004760"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -339709,19 +339709,6 @@ bo:15721 a owl:NamedIndividual , owl:Class , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00291"@en ; tawny:name "15721"@en . -bo:16375 a owl:Class , owl:NamedIndividual , sybio:KOEN ; - rdfs:comment "nitrile hydratase [EC:4.2.1.84]"@en ; - rdfs:label "E4.2.1.84"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018822"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01721"@en ; - tawny:name "16375"@en . - a sybio:BiologicalProcess , owl:NamedIndividual , owl:Class ; rdfs:comment "The cellular metabolic process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA."@en ; @@ -339732,201 +339719,204 @@ bo:16375 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "467477 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "526692 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536852 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "176298 \"Activation of claspin\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "485461 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "487512 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507473 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "472164 \"Activation of claspin\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "467450 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; + owl:hasValue "GO:0055133"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176101 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; + owl:hasValue "546964 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "433202 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; + owl:hasValue "507473 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531467 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "176187 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176187 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "446153 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "429125 \"Activation of claspin\""^^xsd:string ; + owl:hasValue "514771 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176318 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "485440 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176264 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "517816 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "490390 \"Activation of claspin\""^^xsd:string ; + owl:hasValue "176101 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "482185 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "433202 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176116 \"Recruitment and activation of Chk1\""^^xsd:string ; + owl:hasValue "467450 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "486163 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; + owl:hasValue "485461 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176175 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; + owl:hasValue "486163 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "446153 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "176116 \"Recruitment and activation of Chk1\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526692 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "541523 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542605 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "176264 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DNA_replication"^^xsd:string ; + owl:hasValue "448696 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470298 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "429125 \"Activation of claspin\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "485413 \"Recruitment and activation of Chk1\""^^xsd:string ; + owl:hasValue "547923 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "472164 \"Activation of claspin\""^^xsd:string ; + owl:hasValue "482185 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487512 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "485413 \"Recruitment and activation of Chk1\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "468344 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; + owl:hasValue "470298 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448696 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "176250 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "446123 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; + owl:hasValue "447074 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "463715 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "467477 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176298 \"Activation of claspin\""^^xsd:string ; + owl:hasValue "475516 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0055133"^^xsd:string ; + owl:hasValue "490390 \"Activation of claspin\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517816 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "516172 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "541523 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "502397 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "176250 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; + owl:hasValue "442012 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "447074 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; + owl:hasValue "468344 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "505179 \"Recruitment and activation of Chk1\""^^xsd:string ; + owl:hasValue "536852 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006260"^^xsd:string ; + owl:hasValue "463715 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "546964 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "176318 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "514771 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "DNA_replication"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "442012 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "GO:0006260"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "516172 \"Recruitment of the Rad9-Hus1-Rad1 complex to DNA\""^^xsd:string ; + owl:hasValue "505179 \"Recruitment and activation of Chk1\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "485440 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; + owl:hasValue "531467 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547923 \"Activation of ATR in response to replication stress\""^^xsd:string ; + owl:hasValue "542605 \"Activation of ATR in response to replication stress\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "475516 \"Binding of ATR-ATRIP to the RPA-ssDNA complex\""^^xsd:string ; + owl:hasValue "446069 \"Recruitment and activation of Chk1\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "446069 \"Recruitment and activation of Chk1\""^^xsd:string ; + owl:hasValue "176175 \"Stalling of DNA replication fork and RPA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "502397 \"Loading of claspin onto DNA during replication origin firing\""^^xsd:string ; + owl:hasValue "446123 \"Recruitment of Rad17-RFC complex to DNA\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16463 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; - rdfs:label "CLOL"@en ; - sybio:accession "Q8GHC3"^^xsd:string ; +bo:16375 a owl:Class , owl:NamedIndividual , sybio:KOEN ; + rdfs:comment "nitrile hydratase [EC:4.2.1.84]"@en ; + rdfs:label "E4.2.1.84"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0018822"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16464 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; - tawny:name "16463"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01721"@en ; + tawny:name "16375"@en . bo:28046 a sybio:Shim , owl:NamedIndividual ; rdfs:label "ydbS_RBS_upstream"@en ; @@ -339938,6 +339928,16 @@ bo:28046 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28045 ; tawny:name "28046"@en . +bo:16463 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; + rdfs:label "CLOL"@en ; + sybio:accession "Q8GHC3"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16464 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; + tawny:name "16463"@en . + bo:16551 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "diacylglycerol cholinephosphotransferase [EC:2.7.8.2]"@en ; rdfs:label "CHPT1"@en , "CPT1"@en ; @@ -339958,6 +339958,16 @@ bo:28134 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31395 ; tawny:name "28134"@en . +bo:28222 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yhcY_RBS"@en ; + sybio:NA "TGCCGGAGTGAGAAAC"^^xsd:string ; + sybio:begin "1008652"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1008667"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31854 ; + tawny:name "28222"@en . + bo:22497 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "3-(2,3-dihydroxyphenyl)propionate 1,2-dioxygenase, MhpB - irreversible"@en ; rdfs:label "cpd:C12623 => cpd:C12623"@en , "C12623 + C00007 <=> C12624"@en ; @@ -339969,16 +339979,6 @@ bo:22497 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11610 ; tawny:name "22497"@en . -bo:28222 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yhcY_RBS"@en ; - sybio:NA "TGCCGGAGTGAGAAAC"^^xsd:string ; - sybio:begin "1008652"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1008667"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31854 ; - tawny:name "28222"@en . - bo:9229 a sybio:Protein , bo:373 , owl:NamedIndividual ; rdfs:comment "BSU10330;putative iron(III) dicitrate-binding lipoprotein;"@en , "Putative ABC transporter substrate-binding lipoprotein yhfQ"@en ; rdfs:label "yhfQ"@en , "BSU10330"@en , "YhfQ"@en ; @@ -340207,27 +340207,27 @@ bo:17380 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01663"@en ; tawny:name "17380"@en . -bo:491 a owl:Class ; - rdfs:label "COG2508"@en ; - rdfs:subClassOf bo:210 , bo:201 , sybio:COG ; +bo:1223 a owl:Class ; + rdfs:label "COG2209"@en ; + rdfs:subClassOf bo:275 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2508"^^xsd:string ; + owl:hasValue "COG2209"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "491"@en . + tawny:name "1223"@en . -bo:1223 a owl:Class ; - rdfs:label "COG2209"@en ; - rdfs:subClassOf bo:275 , sybio:COG ; +bo:491 a owl:Class ; + rdfs:label "COG2508"@en ; + rdfs:subClassOf bo:210 , bo:201 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2209"^^xsd:string ; + owl:hasValue "COG2508"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1223"@en . + tawny:name "491"@en . bo:29051 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU28250"@en , "isopropylmalate isomerase small subunit (EC:4.2.1.33);"@en ; @@ -340272,7 +340272,7 @@ bo:15508 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E1.5.99.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0404"^^xsd:string ; + owl:hasValue "0008480"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -340280,7 +340280,7 @@ bo:15508 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008480"^^xsd:string ; + owl:hasValue "COG0404"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -340332,15 +340332,6 @@ bo:4685 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yfkA,yfkB,yfkC"@en ; tawny:name "4685"@en . -bo:16338 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "ROOTY/SUPERROOT1 [EC:4.4.1.-]"@en ; - rdfs:label "RTY"@en , "SUR1"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16337 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11819"@en ; - tawny:name "16338"@en . - a owl:Class ; rdfs:comment "Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis."@en ; @@ -340353,18 +340344,14 @@ bo:16338 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16426 a sybio:KOEN , owl:NamedIndividual , owl:Class ; - rdfs:comment "novobiocin biosynthesis protein NovO"@en ; - rdfs:label "NOVO"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q9L9F3"^^xsd:string ; - owl:onProperty sybio:accession - ] ; +bo:16338 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "ROOTY/SUPERROOT1 [EC:4.4.1.-]"@en ; + rdfs:label "RTY"@en , "SUR1"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16337 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; - tawny:name "16426"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11819"@en ; + tawny:name "16338"@en . bo:4773 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "katA_terminator"@en ; @@ -340378,6 +340365,19 @@ bo:4773 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4772 ; tawny:name "4773"@en . +bo:16426 a sybio:KOEN , owl:NamedIndividual , owl:Class ; + rdfs:comment "novobiocin biosynthesis protein NovO"@en ; + rdfs:label "NOVO"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q9L9F3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12705"@en ; + tawny:name "16426"@en . + bo:28009 a sybio:RBS , owl:NamedIndividual ; rdfs:label "spoIVCA_RBS"@en ; sybio:NA "TTATAGGAAGGAGATTCAGG"^^xsd:string ; @@ -340388,14 +340388,6 @@ bo:28009 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:30824 ; tawny:name "28009"@en . -bo:16514 a sybio:KOGE , owl:NamedIndividual ; - rdfs:label "E1.1.2.-"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16515 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05888"@en ; - tawny:name "16514"@en . - bo:4861 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yhxD_terminator"@en ; sybio:NA "TGAAAGGAGCTGCCCTGTTCGGTCAGCTCCTTCCTATTTTTCTAA"^^xsd:string ; @@ -340408,6 +340400,14 @@ bo:4861 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4860 ; tawny:name "4861"@en . +bo:16514 a sybio:KOGE , owl:NamedIndividual ; + rdfs:label "E1.1.2.-"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16515 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05888"@en ; + tawny:name "16514"@en . + bo:16602 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "adenylylsulfate reductase, subunit B [EC:1.8.99.2]"@en ; rdfs:label "APRB"@en ; @@ -340716,33 +340716,6 @@ bo:454 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "454"@en . -bo:17431 a owl:Class , owl:NamedIndividual , sybio:KOEN ; - rdfs:comment "acetyl-CoA hydrolase [EC:3.1.2.1]"@en ; - rdfs:label "E3.1.2.1"@en , "ACH1"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0427"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003986"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01067"@en ; - tawny:name "17431"@en . - -bo:23289 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "GDPglucose sugarphosphohydrolase"@en , "cpd:C00394 => cpd:C00394"@en , "C00394 + C00001 <=> C00144 + C00103"@en ; - sybio:accession "RN:R01233"^^xsd:string ; - sybio:catalyzingClass bo:20651 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11648 ; - tawny:name "23289"@en . - bo:29014 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "folyl-polyglutamate synthase (EC:6.3.2.17)"@en , "BSU28080"@en ; rdfs:label "BSU28080"@en , "folC"@en ; @@ -340770,6 +340743,33 @@ bo:29014 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu28080"@en ; tawny:name "29014"@en . +bo:17431 a owl:Class , owl:NamedIndividual , sybio:KOEN ; + rdfs:comment "acetyl-CoA hydrolase [EC:3.1.2.1]"@en ; + rdfs:label "E3.1.2.1"@en , "ACH1"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0427"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "0003986"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01067"@en ; + tawny:name "17431"@en . + +bo:23289 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "GDPglucose sugarphosphohydrolase"@en , "cpd:C00394 => cpd:C00394"@en , "C00394 + C00001 <=> C00144 + C00103"@en ; + sybio:accession "RN:R01233"^^xsd:string ; + sybio:catalyzingClass bo:20651 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11648 ; + tawny:name "23289"@en . + bo:542 a owl:Class ; rdfs:label "COG0561"@en ; rdfs:subClassOf bo:183 , sybio:COG ; @@ -340957,11 +340957,11 @@ bo:18172 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "COBN"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0051116"^^xsd:string ; + owl:hasValue "COG1429"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1429"^^xsd:string ; + owl:hasValue "0051116"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -341794,8 +341794,6 @@ bo:12673 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05600"@en ; tawny:name "12673"@en . -sybio:memberOf a owl:ObjectProperty . - bo:19052 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)[EC:2.5.1.55]"@en ; rdfs:label "KDSA"@en ; @@ -341806,6 +341804,8 @@ bo:19052 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01627"@en ; tawny:name "19052"@en . +sybio:memberOf a owl:ObjectProperty . + bo:31561 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU29730;"@en ; rdfs:label "BSU29730"@en , "motP"@en , "ytxD"@en ; @@ -342154,16 +342154,6 @@ bo:31348 a sybio:CDS , owl:NamedIndividual ; "32.0"@en ; tawny:name "31348"@en . -bo:27858 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "pbpX_RBS_upstream"@en ; - sybio:NA "ACGTGTGCAAAATGGAATTT"^^xsd:string ; - sybio:begin "1765819"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1765838"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27857 ; - tawny:name "27858"@en . - bo:12548 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C14H25N3O6S"@en ; rdfs:label "N-[L-5-Amino-5-carboxypentanoyl]-L-cysteinyl-D-valine"@en , "delta-(L-2-Aminoadipyl)-L-cysteinyl-D-valine"@en , "L-delta-(alpha-Aminoadipoyl)-L-cysteinyl-D-valine"@en , "ACV"@en , "C14H25N3O6S"@en ; @@ -342175,6 +342165,16 @@ bo:12548 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05556"@en ; tawny:name "12548"@en . +bo:27858 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "pbpX_RBS_upstream"@en ; + sybio:NA "ACGTGTGCAAAATGGAATTT"^^xsd:string ; + sybio:begin "1765819"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1765838"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27857 ; + tawny:name "27858"@en . + bo:7274 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "K1 delta 1 gene"@en ; rdfs:label "Q45626"@en ; @@ -342238,11 +342238,11 @@ bo:19015 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "XYLT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030158"^^xsd:string ; + owl:hasValue "GT14"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT14"^^xsd:string ; + owl:hasValue "0030158"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -343190,19 +343190,19 @@ bo:13516 a sybio:Compound , owl:NamedIndividual ; rdfs:label "arginosuccinate synthetase"@en , "argininosuccinate synthetase"@en , "argininosuccinic acid synthetase"@en , "GO:0004055"@en , "citrulline--aspartate ligase"@en , "argininosuccinate synthase"@en , "L-citrulline:L-aspartate ligase"@en , "arginine succinate synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ARGSUCCINSYN-RXN"^^xsd:string ; + owl:hasValue "6.3.4.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004055"^^xsd:string ; + owl:hasValue "7171 \"argininosuccinate synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7171 \"argininosuccinate synthase activity\""^^xsd:string ; + owl:hasValue "GO:0004055"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.5"^^xsd:string ; + owl:hasValue "ARGSUCCINSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -343275,15 +343275,15 @@ bo:13604 a owl:NamedIndividual , sybio:Compound ; rdfs:label "ATP:1 2-diacylglycerol 3-phosphotransferase"@en , "diacylglycerol:ATP kinase"@en , "DGK"@en , "DG kinase"@en , "1 2-diacylglycerol kinase"@en , "diacylglycerol kinase"@en , "CTP:diacylglycerol kinase"@en , "GO:0004143"@en , "sn-1 2-diacylglycerol kinase"@en , "arachidonoyl-specific diacylglycerol kinase"@en , "diglyceride kinase"@en , "ATP:diacylglycerol phosphotransferase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIACYLGLYKIN-RXN"^^xsd:string ; + owl:hasValue "2.7.1.107"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.107"^^xsd:string ; + owl:hasValue "GO:0004143"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004143"^^xsd:string ; + owl:hasValue "DIACYLGLYKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -343397,11 +343397,11 @@ bo:17896 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "PNTA"@en , "E1.6.1.2A"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008750"^^xsd:string ; + owl:hasValue "COG3288"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3288"^^xsd:string ; + owl:hasValue "0008750"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -343654,17 +343654,6 @@ bo:14521 a owl:NamedIndividual , sybio:Compound ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:21297 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C00361 <=> cpd:C00361"@en , "ATP"@en , "dGDP phosphotransferase"@en , "C00002 + C00361 <=> C00008 + C00286"@en ; - sybio:accession "RN:R01857"^^xsd:string ; - sybio:catalyzedBy bo:19826 ; - sybio:catalyzingClass bo:19827 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 , bo:11574 ; - tawny:name "21297"@en . - bo:27022 a sybio:MicroarrayExperiment , owl:NamedIndividual ; rdfs:comment "B.subtilis DegU regulon, degU inactivation"@en ; rdfs:label "ex0001760"@en ; @@ -343676,69 +343665,80 @@ bo:27022 a sybio:MicroarrayExperiment , owl:NamedIndividua sybio:targetExperiment "strain: WTF28 degU::cat, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; tawny:name "27022"@en . +bo:21297 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C00361 <=> cpd:C00361"@en , "ATP"@en , "dGDP phosphotransferase"@en , "C00002 + C00361 <=> C00008 + C00286"@en ; + sybio:accession "RN:R01857"^^xsd:string ; + sybio:catalyzedBy bo:19826 ; + sybio:catalyzingClass bo:19827 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 , bo:11574 ; + tawny:name "21297"@en . + a owl:Class ; rdfs:comment "A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell."@en ; rdfs:label "apoptosis"@en , "apoptotic program"@en , "type I programmed cell death"@en , "GO:0006915"@en , "signaling caspase"@en , "apoptotic programmed cell death"@en , "programmed cell death by apoptosis"@en , "apoptotic cell death"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469739 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "109581 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469808 \"Apoptosis\""^^xsd:string ; + owl:hasValue "GO:0008632"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487550 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "568771 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "109581 \"Apoptosis\""^^xsd:string ; + owl:hasValue "595585 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517491 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "448611 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449127 \"NRIF signals cell death from the nucleus\""^^xsd:string ; + owl:hasValue "517584 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536644 \"Apoptosis\""^^xsd:string ; + owl:hasValue "558146 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568771 \"Apoptosis\""^^xsd:string ; + owl:hasValue "581974 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469638 \"NADE modulates death signalling\""^^xsd:string ; + owl:hasValue "469808 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526360 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "592641 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006915"^^xsd:string ; + owl:hasValue "487550 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487920 \"NRIF signals cell death from the nucleus\""^^xsd:string ; + owl:hasValue "526360 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517584 \"Apoptosis\""^^xsd:string ; + owl:hasValue "205043 \"NRIF signals cell death from the nucleus\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547717 \"Apoptosis\""^^xsd:string ; + owl:hasValue "449127 \"NRIF signals cell death from the nucleus\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008632"^^xsd:string ; + owl:hasValue "517491 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -343746,88 +343746,94 @@ bo:27022 a sybio:MicroarrayExperiment , owl:NamedIndividua owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595585 \"Apoptosis\""^^xsd:string ; + owl:hasValue "552296 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552296 \"Apoptosis\""^^xsd:string ; + owl:hasValue "487666 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507506 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "193648 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558146 \"Apoptosis\""^^xsd:string ; + owl:hasValue "531265 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487666 \"Apoptosis\""^^xsd:string ; + owl:hasValue "205025 \"NADE modulates death signalling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542372 \"Apoptosis\""^^xsd:string ; + owl:hasValue "507462 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531265 \"Apoptosis\""^^xsd:string ; + owl:hasValue "GO:0006915"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "205043 \"NRIF signals cell death from the nucleus\""^^xsd:string ; + owl:hasValue "547717 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470237 \"NRIF signals cell death from the nucleus\""^^xsd:string ; + owl:hasValue "585866 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581974 \"Apoptosis\""^^xsd:string ; + owl:hasValue "536644 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Apoptosis"^^xsd:string ; + owl:hasValue "507506 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585866 \"Apoptosis\""^^xsd:string ; + owl:hasValue "Apoptosis"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448611 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "469638 \"NADE modulates death signalling\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592641 \"Apoptosis\""^^xsd:string ; + owl:hasValue "542372 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "205025 \"NADE modulates death signalling\""^^xsd:string ; + owl:hasValue "448685 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "193648 \"NRAGE signals death through JNK\""^^xsd:string ; + owl:hasValue "507977 \"NRIF signals cell death from the nucleus\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507462 \"Apoptosis\""^^xsd:string ; + owl:hasValue "487920 \"NRIF signals cell death from the nucleus\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526461 \"Apoptosis\""^^xsd:string ; + owl:hasValue "470237 \"NRIF signals cell death from the nucleus\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507977 \"NRIF signals cell death from the nucleus\""^^xsd:string ; + owl:hasValue "526461 \"Apoptosis\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448685 \"Apoptosis\""^^xsd:string ; + owl:hasValue "469739 \"NRAGE signals death through JNK\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27110 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigF_bofC"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27110"@en . + bo:21385 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "5-Hydroxyisourate amidohydrolase"@en , "cpd:C11821 => cpd:C11821"@en , "C11821 + C00001 <=> C12248"@en ; @@ -343838,12 +343844,6 @@ bo:21385 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 , bo:11574 ; tawny:name "21385"@en . -bo:27110 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigF_bofC"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27110"@en . - bo:21473 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "cpd:C00015 => cpd:C00015"@en , "AMP phosphotransferase;UTP"@en , "C00075 + C00020 <=> C00015 + C00008"@en , "AMP phosphotransferase"@en , "Uridine triphosphate"@en ; @@ -343865,15 +343865,15 @@ bo:21473 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.2.2"^^xsd:string ; + owl:hasValue "7065 \"N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7065 \"N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity\""^^xsd:string ; + owl:hasValue "GO:0004018"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004018"^^xsd:string ; + owl:hasValue "4.3.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -343899,11 +343899,11 @@ bo:21561 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CHORISMATEMUT-RXN"^^xsd:string ; + owl:hasValue "5.4.99.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.99.5"^^xsd:string ; + owl:hasValue "CHORISMATEMUT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -344332,11 +344332,11 @@ bo:18776 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "1-deoxy-D-xylulose-5-phosphate synthase"@en , "DXP-synthase"@en , "GO:0008661"@en , "DOXP synthase"@en , "1-deoxyxylulose-5-phosphate synthase"@en , "1-deoxy-D-xylulose-5-phosphate pyruvate-lyase"@en , "pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008661"^^xsd:string ; + owl:hasValue "DXS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DXS-RXN"^^xsd:string ; + owl:hasValue "GO:0008661"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -344463,7 +344463,7 @@ bo:15313 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "USHA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008253"^^xsd:string ; + owl:hasValue "COG0737"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -344471,7 +344471,7 @@ bo:15313 a sybio:KOEN , owl:NamedIndividual , owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0737"^^xsd:string ; + owl:hasValue "0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -344714,40 +344714,21 @@ bo:10593 a bo:1866 , bo:1797 , owl:NamedIndividual , sybio sybio:taxId "[224308, 1423]"@en ; tawny:name "10593"@en . -bo:10681 a bo:626 , bo:627 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "putative transcriptional regulator of efflux transporter;BSU05460"@en , "Uncharacterized HTH-type transcriptional regulator ydfL"@en ; - rdfs:label "YdfL"@en , "ydfL"@en , "BSU05460"@en ; - sybio:AA "MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVNEDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEVAGDSIEITLIDYGITNNLDNYVTEILLPIK"@en ; - sybio:accession "BSU05460"^^xsd:string , "P96690"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI"@en ; - sybio:encodedBy bo:30740 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "31782.355"^^xsd:string ; - sybio:pI "6.606026"^^xsd:string ; - sybio:productType "pr : putative regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10681"@en ; - owl:sameAs bo:2644 . - a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetate."@en ; rdfs:label "N-acetylglucosamine-6-phosphate deacetylase"@en , "acetylaminodeoxyglucosephosphate acetylhydrolase"@en , "N-acetyl-D-glucosamine-6-phosphate amidohydrolase"@en , "acetylglucosamine phosphate deacetylase"@en , "GO:0008448"@en , "2-acetamido-2-deoxy-D-glucose-6-phosphate amidohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.25"^^xsd:string ; + owl:hasValue "NAG6PDEACET-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAG6PDEACET-RXN"^^xsd:string ; + owl:hasValue "GO:0008448"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008448"^^xsd:string ; + owl:hasValue "3.5.1.25"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -344765,6 +344746,25 @@ bo:25991 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "25991"@en . +bo:10681 a bo:626 , bo:627 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "putative transcriptional regulator of efflux transporter;BSU05460"@en , "Uncharacterized HTH-type transcriptional regulator ydfL"@en ; + rdfs:label "YdfL"@en , "ydfL"@en , "BSU05460"@en ; + sybio:AA "MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVNEDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEVAGDSIEITLIDYGITNNLDNYVTEILLPIK"@en ; + sybio:accession "BSU05460"^^xsd:string , "P96690"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI"@en ; + sybio:encodedBy bo:30740 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "31782.355"^^xsd:string ; + sybio:pI "6.606026"^^xsd:string ; + sybio:productType "pr : putative regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10681"@en ; + owl:sameAs bo:2644 . + bo:17060 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "phosphatidylinositol 3-kinase [EC:2.7.1.137]"@en ; rdfs:label "PIK3C3"@en , "E2.7.1.137"@en , "VPS34"@en ; @@ -344807,11 +344807,11 @@ bo:18739 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "A4GALT"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050512"^^xsd:string ; + owl:hasValue "GT32"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT32"^^xsd:string ; + owl:hasValue "0050512"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -344866,7 +344866,7 @@ bo:18915 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "penicillinase I II"@en , "penicillin beta-lactamase"@en , "beta-lactamase I-III"@en , "GO:0008800"@en , "beta-lactamase"@en , "neutrapen"@en , "exopenicillinase"@en , "beta-lactamase A B C"@en , "beta-lactam hydrolase"@en , "penicillin amido-beta-lactamhydrolase"@en , "ampicillinase"@en , "cephalosporin-beta-lactamase"@en , "beta-lactamase AME I"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BETA-LACTAMASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008800"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -344874,7 +344874,7 @@ bo:18915 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008800"^^xsd:string ; + owl:hasValue "BETA-LACTAMASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -345065,22 +345065,22 @@ bo:16017 a owl:NamedIndividual , sybio:KOPR ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: N2-acetyl-L-ornithine + 2-oxoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate."@en ; - rdfs:label "acetylornithine delta-transaminase"@en , "acetylornithine aminotransferase"@en , "acetylornithine 5-aminotransferase"@en , "succinylornithine aminotransferase"@en , "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase"@en , "N2-acetylornithine 5-aminotransferase"@en , "N2-acetylornithine 5-transaminase"@en , "N2-acetyl-L-ornithine:2-oxoglutarate aminotransferase"@en , "acetylornithine transaminase"@en , "5-transaminase"@en , "N-acetylornithine-delta-transaminase"@en , "N-acetylornithine aminotransferase"@en , "ACOAT"@en , "GO:0003992"@en , "2-N-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase"@en ; + rdfs:label "acetylornithine 5-aminotransferase"@en , "succinylornithine aminotransferase"@en , "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase"@en , "N2-acetylornithine 5-aminotransferase"@en , "N2-acetylornithine 5-transaminase"@en , "N2-acetyl-L-ornithine:2-oxoglutarate aminotransferase"@en , "acetylornithine transaminase"@en , "5-transaminase"@en , "N-acetylornithine-delta-transaminase"@en , "N-acetylornithine aminotransferase"@en , "ACOAT"@en , "GO:0003992"@en , "acetylornithine delta-transaminase"@en , "2-N-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase"@en , "acetylornithine aminotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETYLORNTRANSAM-RXN"^^xsd:string ; + owl:hasValue "2.6.1.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047318"^^xsd:string ; + owl:hasValue "GO:0003992"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003992"^^xsd:string ; + owl:hasValue "GO:0047318"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.11"^^xsd:string ; + owl:hasValue "ACETYLORNTRANSAM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -345110,23 +345110,6 @@ bo:16105 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00501"@en ; tawny:name "16105"@en . -bo:10468 a sybio:Protein , owl:NamedIndividual , bo:1488 ; - rdfs:comment "putative p-nitrophenyl phosphatase;BSU32290"@en , "Uncharacterized hydrolase yutF"@en ; - rdfs:label "YutF"@en , "yutF"@en , "BSU32290"@en ; - sybio:AA "MKTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMATAQHIAQQKKDASVYVIGEEGIRQAIEENGLTFGGENADFVVVGIDRSITYEKFAVGCLAIRNGARFISTNGDIAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDMEKPTHAIDSLTEWIPYI"@en ; - sybio:accession "O32125"^^xsd:string , "BSU32290"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:30444 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "27955.665"^^xsd:string ; - sybio:pI "4.739708"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10468"@en . - bo:19920 a sybio:Enzyme , owl:NamedIndividual ; rdfs:comment "derived enzyme"@en ; rdfs:label "comEB"@en ; @@ -345149,6 +345132,23 @@ bo:25778 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25778"@en . +bo:10468 a sybio:Protein , owl:NamedIndividual , bo:1488 ; + rdfs:comment "putative p-nitrophenyl phosphatase;BSU32290"@en , "Uncharacterized hydrolase yutF"@en ; + rdfs:label "YutF"@en , "yutF"@en , "BSU32290"@en ; + sybio:AA "MKTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMATAQHIAQQKKDASVYVIGEEGIRQAIEENGLTFGGENADFVVVGIDRSITYEKFAVGCLAIRNGARFISTNGDIAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDMEKPTHAIDSLTEWIPYI"@en ; + sybio:accession "O32125"^^xsd:string , "BSU32290"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:30444 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "27955.665"^^xsd:string ; + sybio:pI "4.739708"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10468"@en . + bo:5194 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ypoP"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -345157,6 +345157,15 @@ bo:5194 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ypoP"@en ; tawny:name "5194"@en . +bo:25866 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "unclear reaction - reversible"@en ; + rdfs:label "cpd:C03677 <=> cpd:C03677"@en , "C03677 <=> C11691"@en ; + sybio:accession "RN:R05852"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25866"@en . + bo:10556 a sybio:Protein , bo:1817 , owl:NamedIndividual ; rdfs:comment "BSU36360;large conductance mechanosensitive channel protein"@en , "Large-conductance mechanosensitive channel"@en ; rdfs:label "BSU36360"@en , "MscL"@en , "mscL"@en , "YwpC"@en ; @@ -345176,15 +345185,6 @@ bo:10556 a sybio:Protein , bo:1817 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10556"@en . -bo:25866 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "unclear reaction - reversible"@en ; - rdfs:label "cpd:C03677 <=> cpd:C03677"@en , "C03677 <=> C11691"@en ; - sybio:accession "RN:R05852"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25866"@en . - bo:5282 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ypuD"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -345302,6 +345302,8 @@ bo:10820 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10820"@en . +sybio:terminates a owl:ObjectProperty . + bo:23057 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "general reaction - reversible"@en ; rdfs:label " <=> "@en , "C00726 + 2 C00001 <=> C00060 + C00014"@en , "Nitrile aminohydrolase"@en ; @@ -345313,8 +345315,6 @@ bo:23057 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 , bo:11734 , bo:11637 ; tawny:name "23057"@en . -sybio:terminates a owl:ObjectProperty . - bo:310 a owl:Class ; rdfs:label "COG0222"@en ; rdfs:subClassOf bo:194 , sybio:COG ; @@ -345469,25 +345469,6 @@ bo:11297 a bo:347 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11297"@en . -bo:11385 a owl:NamedIndividual , sybio:Protein , bo:550 ; - rdfs:comment "lysophopholipase;BSU04110"@en , "Spore germination lipase lipC"@en ; - rdfs:label "BSU04110"@en , "lipC"@en , "LipC"@en , "YcsK"@en ; - sybio:AA "MVLRYTALGDSLTTGRGSGLFSPGFVQRFGDMMEADLKTRTAINIFARSGLNTEEILGLLSYPYVQKCIRDADMITITGCGNDLIDSVLAYQTSKDETIFSRVSAHCHENFEKMIAKVAEIKGENPSPYAIRVFNLYNPFPEIDIAGKWITSFNSHLETLASAPHVKIADAYSIFKGKEQEYLSFDGVHPNSKGYQAMAEAVHKLGYKELSVS"@en ; - sybio:accession "BSU04110"^^xsd:string , "P42969"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30856 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "23604.96"^^xsd:string ; - sybio:pI "5.865181"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:9504 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11385"@en . - bo:30185 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU25010"@en ; rdfs:label "yqgE"@en , "BSU25010"@en ; @@ -345545,6 +345526,25 @@ bo:26695 a sybio:Protein , bo:380 , bo:536 , bo:535 , owl: sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:11385 a owl:NamedIndividual , sybio:Protein , bo:550 ; + rdfs:comment "lysophopholipase;BSU04110"@en , "Spore germination lipase lipC"@en ; + rdfs:label "BSU04110"@en , "lipC"@en , "LipC"@en , "YcsK"@en ; + sybio:AA "MVLRYTALGDSLTTGRGSGLFSPGFVQRFGDMMEADLKTRTAINIFARSGLNTEEILGLLSYPYVQKCIRDADMITITGCGNDLIDSVLAYQTSKDETIFSRVSAHCHENFEKMIAKVAEIKGENPSPYAIRVFNLYNPFPEIDIAGKWITSFNSHLETLASAPHVKIADAYSIFKGKEQEYLSFDGVHPNSKGYQAMAEAVHKLGYKELSVS"@en ; + sybio:accession "BSU04110"^^xsd:string , "P42969"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30856 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "23604.96"^^xsd:string ; + sybio:pI "5.865181"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:9504 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11385"@en . + bo:30273 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26540"@en ; rdfs:label "yrkE"@en , "BSU26540"@en ; @@ -345570,24 +345570,6 @@ bo:30273 a owl:NamedIndividual , sybio:CDS ; "20.0"@en ; tawny:name "30273"@en . -bo:11473 a bo:211 , bo:180 , sybio:Protein , owl:NamedIndividual , bo:209 , bo:196 ; - rdfs:comment "BSU10650;DNA ATP-dependent repair enzyme"@en , "Nuclease sbcCD subunit C"@en ; - rdfs:label "sbcC"@en , "BSU10650"@en , "YirY"@en , "SbcC"@en ; - sybio:AA "MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTFALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSLKGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKVLEQAEARLEAMRKNRDQAKERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADRTAFFQQKHEEYEAWRQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRGQNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAYEAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSHLEEDIKRTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFETAKFEWKRIKQDILSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDRAAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKLLKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGIDQFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQMHIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLTSLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSGRGTRVSLELM"@en ; - sybio:accession "O06714"^^xsd:string , "BSU10650"^^xsd:string ; - sybio:biologicalProcess "16.9 : Replicate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31014 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "128915.875"^^xsd:string ; - sybio:pI "5.462929"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11473"@en . - bo:26783 a owl:NamedIndividual , sybio:Protein , bo:567 , bo:1809 ; rdfs:comment "Acetolactate synthase;derived protein"@en , "BSU36010;alpha-acetolactate synthase"@en ; rdfs:label "BSU36010"@en , "alsS"@en , "AlsS"@en ; @@ -345606,21 +345588,23 @@ bo:26783 a owl:NamedIndividual , sybio:Protein , bo:567 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26783"@en . -bo:11561 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00061.png"@en ; - rdfs:label "Fatty acid biosynthesis"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00061"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11677 , bo:11720 , bo:11565 , bo:11549 ; - sybio:derivesFrom bo:11562 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00061"@en ; - tawny:name "11561"@en . +bo:11473 a bo:211 , bo:180 , sybio:Protein , owl:NamedIndividual , bo:209 , bo:196 ; + rdfs:comment "BSU10650;DNA ATP-dependent repair enzyme"@en , "Nuclease sbcCD subunit C"@en ; + rdfs:label "sbcC"@en , "BSU10650"@en , "YirY"@en , "SbcC"@en ; + sybio:AA "MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTFALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSLKGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKVLEQAEARLEAMRKNRDQAKERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADRTAFFQQKHEEYEAWRQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRGQNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAYEAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSHLEEDIKRTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFETAKFEWKRIKQDILSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDRAAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKLLKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGIDQFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQMHIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLTSLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSGRGTRVSLELM"@en ; + sybio:accession "O06714"^^xsd:string , "BSU10650"^^xsd:string ; + sybio:biologicalProcess "16.9 : Replicate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31014 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:hasRole "2.3 : Metabolism of nucleotides and nucleic acids"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "128915.875"^^xsd:string ; + sybio:pI "5.462929"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11473"@en . bo:30361 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU29890"@en ; @@ -345667,6 +345651,22 @@ bo:26871 a sybio:Protein , bo:1246 , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26871"@en . +bo:11561 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00061.png"@en ; + rdfs:label "Fatty acid biosynthesis"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00061"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11677 , bo:11720 , bo:11565 , bo:11549 ; + sybio:derivesFrom bo:11562 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00061"@en ; + tawny:name "11561"@en . + bo:19619 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "ctaA"@en ; @@ -345683,15 +345683,15 @@ bo:19619 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "GO:0003867"@en , "beta-alanine-oxoglutarate transaminase"@en , "4-aminobutyrate aminotransferase"@en , "beta-alanine aminotransferase"@en , "glutamate-succinic semialdehyde transaminase"@en , "4-aminobutyric acid aminotransferase"@en , "GABA aminotransferase"@en , "GABA transferase"@en , "GABA transaminase"@en , "4-aminobutyrate transaminase"@en , "gamma-aminobutyric acid transaminase"@en , "4-aminobutanoate transaminase"@en , "aminobutyrate transaminase"@en , "beta-alanine--oxoglutarate aminotransferase"@en , "gamma-aminobutyric transaminase"@en , "gamma-aminobutyrate aminotransaminase"@en , "gamma-amino-N-butyrate transaminase"@en , "gamma-aminobutyrate transaminase"@en , "gamma-aminobutyric acid aminotransferase"@en , "aminobutyrate aminotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.19"^^xsd:string ; + owl:hasValue "GABATRANSAM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003867"^^xsd:string ; + owl:hasValue "2.6.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GABATRANSAM-RXN"^^xsd:string ; + owl:hasValue "GO:0003867"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -345940,23 +345940,23 @@ bo:32957 a sybio:CDS , owl:NamedIndividual ; rdfs:label "iron superoxide oxidoreductase"@en , "Mn Fe superoxide dismutase"@en , "Cu Zn-SOD"@en , "Fe-SOD"@en , "superoxide dismutase II"@en , "cuprein"@en , "SOD-3"@en , "SOD-4"@en , "erythrocuprein"@en , "superoxide dismutase I"@en , "ferrisuperoxide dismutase"@en , "SOD"@en , "hepatocuprein"@en , "hemocuprein"@en , "manganese superoxide dismutase"@en , "superoxide dismutase"@en , "SODF"@en , "cytocuprein"@en , "SOD-1"@en , "SOD-2"@en , "superoxide:superoxide oxidoreductase"@en , "iron superoxide dismutase"@en , "nickel superoxide oxidoreductase"@en , "SODS"@en , "Cu-Zn superoxide dismutase"@en , "nickel superoxide dismutase"@en , "GO:0004784"@en , "Mn-SOD"@en , "manganese superoxide oxidoreductase"@en , "zinc superoxide oxidoreductase"@en , "copper zinc superoxide dismutase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004785"^^xsd:string ; + owl:hasValue "SUPEROX-DISMUT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016954"^^xsd:string ; + owl:hasValue "GO:0008383"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SUPEROX-DISMUT-RXN"^^xsd:string ; + owl:hasValue "GO:0004785"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008383"^^xsd:string ; + owl:hasValue "GO:0016954"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.15.1.1"^^xsd:string ; + owl:hasValue "GO:0008382"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -345964,7 +345964,7 @@ bo:32957 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008382"^^xsd:string ; + owl:hasValue "1.15.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -346322,10 +346322,6 @@ bo:24025 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2."@en ; rdfs:label "DNA-gyrase"@en , "DNA topoisomerase (ATP-hydrolyzing)"@en , "DNA topoisomerase IV"@en , "deoxyribonucleate topoisomerase"@en , "GO:0003918"@en , "topoisomerase"@en , "DNA topoisomerase"@en , "deoxyribonucleic topoisomerase"@en , "DNA gyrase"@en , "DNA topoisomerase type II"@en , "topoisomerase II"@en , "DNA topoisomerase II"@en , "type II DNA topoisomerase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.99.1.3"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0003918"^^xsd:string ; owl:onProperty sybio:accession @@ -346338,6 +346334,10 @@ bo:24025 a owl:NamedIndividual , sybio:Reaction ; owl:hasValue "Type_II_topoisomerase"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "5.99.1.3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -346582,11 +346582,11 @@ bo:12441 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GPPSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004659"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004659"^^xsd:string ; + owl:hasValue "GPPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -346598,15 +346598,15 @@ bo:12441 a owl:NamedIndividual , sybio:Compound ; rdfs:label "ATP:D-ribose 5-phosphotransferase"@en , "ribokinase"@en , "D-ribokinase"@en , "GO:0004747"@en , "deoxyribokinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004747"^^xsd:string ; + owl:hasValue "2.7.1.15"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.15"^^xsd:string ; + owl:hasValue "RIBOKIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBOKIN-RXN"^^xsd:string ; + owl:hasValue "GO:0004747"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -346671,11 +346671,11 @@ bo:15991 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "ASTE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009017"^^xsd:string ; + owl:hasValue "COG2988"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2988"^^xsd:string ; + owl:hasValue "0009017"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -346844,22 +346844,6 @@ bo:14949 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K02786+K02787+K02788"@en ; tawny:name "14949"@en . - - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; - rdfs:comment "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule."@en ; - rdfs:label "GO:0005488"@en , "binding"@en , "ligand"@en ; - rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Binding_(molecular)"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005488"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:9675 a owl:NamedIndividual , bo:1505 , bo:364 , sybio:Protein ; rdfs:comment "Branched-chain amino acid transport protein azlC"@en , "BSU26710;branched-chain amino acid transporter;"@en ; rdfs:label "YrdH"@en , "BSU26710"@en , "AzlC"@en , "azlC"@en ; @@ -346879,17 +346863,33 @@ bo:9675 a owl:NamedIndividual , bo:1505 , bo:364 , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "9675"@en . + + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; + rdfs:comment "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule."@en ; + rdfs:label "GO:0005488"@en , "binding"@en , "ligand"@en ; + rdfs:subClassOf , sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Binding_(molecular)"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0005488"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + a sybio:CellularComponent , owl:Class , owl:NamedIndividual ; rdfs:comment "The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite."@en ; rdfs:label "GO:0005576"@en , "extracellular"@en , "extracellular region"@en ; rdfs:subClassOf , sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005576"^^xsd:string ; + owl:hasValue "Extracellular"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Extracellular"^^xsd:string ; + owl:hasValue "GO:0005576"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -346962,11 +346962,11 @@ bo:31028 a sybio:CDS , owl:NamedIndividual ; rdfs:label "ribosomal RNA"@en , "GO:0005840"@en , "ribosome"@en ; rdfs:subClassOf , sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Ribosome"^^xsd:string ; + owl:hasValue "GO:0005840"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005840"^^xsd:string ; + owl:hasValue "Ribosome"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -347210,23 +347210,23 @@ bo:15954 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "protein amino acid O-linked glycosylation"@en , "GO:0006493"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0155"^^xsd:string ; + owl:hasValue "AA0154"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0157"^^xsd:string ; + owl:hasValue "AA0212"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0154"^^xsd:string ; + owl:hasValue "AA0155"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006493"^^xsd:string ; + owl:hasValue "AA0157"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0212"^^xsd:string ; + owl:hasValue "GO:0006493"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -348467,11 +348467,11 @@ bo:21153 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0019008"@en , "molybdopterin converting factor complex"@en , "molybdopterin synthase complex"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019008"^^xsd:string ; + owl:hasValue "GO:0019009"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019009"^^xsd:string ; + owl:hasValue "GO:0019008"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -348626,11 +348626,11 @@ bo:17539 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "TTDA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1951"^^xsd:string ; + owl:hasValue "0008730"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008730"^^xsd:string ; + owl:hasValue "COG1951"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -348923,19 +348923,19 @@ bo:18368 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "adenosine monophosphatase"@en , "AMP phosphatase"@en , "5'-mononucleotidase"@en , "adenosine 5'-phosphatase"@en , "AMP phosphohydrolase"@en , "5'-AMPase"@en , "snake venom 5'-nucleotidase"@en , "AMPase"@en , "5'-nucleotidase"@en , "uridine 5'-nucleotidase"@en , "GO:0008253"@en , "5'-AMP nucleotidase"@en , "UMPase"@en , "5'-ribonucleotide phosphohydrolase"@en , "5'-adenylic phosphatase"@en , "5' nucleotidase"@en , "thimidine monophosphate nucleotidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.5"^^xsd:string ; + owl:hasValue "23614 \"5'-nucleotidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5-NUCLEOTID-RXN"^^xsd:string ; + owl:hasValue "GO:0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008253"^^xsd:string ; + owl:hasValue "5-NUCLEOTID-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "23614 \"5'-nucleotidase activity\""^^xsd:string ; + owl:hasValue "3.1.3.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -349403,6 +349403,18 @@ bo:10097 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10097"@en . +bo:25495 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.2.1.36"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.2.1.36"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25495"@en . + bo:10185 a owl:NamedIndividual , bo:450 , sybio:Protein ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator yobS"@en , "BSU19070;putative transcriptional regulator"@en ; rdfs:label "YobS"@en , "BSU19070"@en , "yobS"@en ; @@ -349421,17 +349433,17 @@ bo:10185 a owl:NamedIndividual , bo:450 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10185"@en . -bo:25495 a sybio:EC , owl:Class , owl:NamedIndividual ; +bo:25583 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.2.1.36"@en ; + rdfs:label "2.4.1.141"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.36"^^xsd:string ; + owl:hasValue "2.4.1.141"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25495"@en . + tawny:name "25583"@en . bo:10273 a owl:NamedIndividual , sybio:Protein , bo:593 ; rdfs:comment "Tyrosine recombinase xerD"@en , "site-specific tyrosine recombinase for chromosome partitioning;BSU23510"@en ; @@ -349451,17 +349463,15 @@ bo:10273 a owl:NamedIndividual , sybio:Protein , bo:593 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10273"@en . -bo:25583 a sybio:EC , owl:NamedIndividual , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.141"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.141"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25583"@en . +bo:25671 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "N-acetyl-D-glucosamine-6-sulfate 6-sulfohydrolase"@en , "G09660 + C00001 <=> G02632 + C00059"@en , " <=> "@en ; + sybio:accession "RN:R07819"^^xsd:string ; + sybio:catalyzingClass bo:25637 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25671"@en . bo:10361 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yrvD"@en , "BSU27630;conserved hypothetical protein"@en ; @@ -349479,16 +349489,6 @@ bo:10361 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10361"@en . -bo:25671 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "N-acetyl-D-glucosamine-6-sulfate 6-sulfohydrolase"@en , "G09660 + C00001 <=> G02632 + C00059"@en , " <=> "@en ; - sybio:accession "RN:R07819"^^xsd:string ; - sybio:catalyzingClass bo:25637 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25671"@en . - bo:6678 a owl:NamedIndividual , sybio:TF ; rdfs:comment "transcriptional regulator (AraC/XylS family)"@en ; rdfs:label "YesS"@en , "BSU07010"@en ; @@ -349655,11 +349655,11 @@ bo:24805 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0000034"@en , "ADase"@en , "adenase"@en , "adenine aminohydrolase"@en , "adenine aminase"@en , "adenine deaminase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000034"^^xsd:string ; + owl:hasValue "ADENINE-DEAMINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENINE-DEAMINASE-RXN"^^xsd:string ; + owl:hasValue "GO:0000034"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -349719,15 +349719,15 @@ bo:11190 a bo:287 , sybio:Protein , owl:NamedIndividual ; rdfs:label "xylose isomerase"@en , "GO:0009045"@en , "D-xylose ketoisomerase"@en , "D-xylose aldose-ketose-isomerase"@en , "D-xylose isomerase"@en , "D-xylose ketol-isomerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.5"^^xsd:string ; + owl:hasValue "XYLISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009045"^^xsd:string ; + owl:hasValue "5.3.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "XYLISOM-RXN"^^xsd:string ; + owl:hasValue "GO:0009045"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -350326,25 +350326,6 @@ bo:26287 a owl:NamedIndividual , bo:463 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26287"@en . -bo:11065 a sybio:Protein , bo:356 , bo:353 , owl:NamedIndividual ; - rdfs:comment "Cell division ATP-binding protein ftsE"@en , "cell-division ABC transporter (ATP-binding protein);BSU35260"@en ; - rdfs:label "BSU35260"@en , "ftsE"@en , "FtsE"@en ; - sybio:AA "MIEMKEVYKAYPNGVKALNGISVTIHPGEFVYVVGPSGAGKSTFIKMIYREEKPTKGQILINHKDLATIKEKEIPFVRRKIGVVFQDFKLLPKLTVFENVAFALEVIGEQPSVIKKRVLEVLDLVQLKHKARQFPDQLSGGEQQRVSIARSIVNNPDVVIADEPTGNLDPDTSWEVMKTLEEINNRGTTVVMATHNKEIVNTMKKRVIAIEDGIIVRDESRGEYGSYD"@en ; - sybio:accession "O34814"^^xsd:string , "BSU35260"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30573 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "1.7 : Cell division"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "25618.595"^^xsd:string ; - sybio:pI "8.014549"^^xsd:string ; - sybio:productType "cp : cell process"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11065"@en . - bo:26375 a owl:NamedIndividual , bo:1205 , sybio:Protein ; rdfs:comment "2-amino-3-ketobutyrate CoA ligase (glycine acetyl transferase);BSU17000"@en , "Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase;derived protein"@en ; rdfs:label "kbl"@en , "Kbl"@en , "BSU17000"@en ; @@ -350364,24 +350345,24 @@ bo:26375 a owl:NamedIndividual , bo:1205 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26375"@en . -bo:11153 a owl:NamedIndividual , sybio:Protein , bo:490 ; - rdfs:comment "Uncharacterized symporter ywcA;"@en , "putative acetate Na+-dependent symporter;BSU38240"@en ; - rdfs:label "YwcA"@en , "ywcA"@en , "Ipa-31r"@en , "BSU38240"@en ; - sybio:AA "MNMTAFLLFLAIVGLTLIITYFAAKRTKTTSEFYTAGGGLTGVQNGLAIAGDYMSAASFLGIAGMIALYGFDGFFYSIGFLVAYLVVLYIVAEPLRNLGKYTMADMIAARFKEKKIRGVAALNTIAISTFYMIAQLVGAGALIKLLLGLDYTAAVLIVGVLMTIYVVFGGMIATSWVQIIKAVLLMAGTLVISIIVFSKFGFSLNTMFEQMKTATPLGADFLNPGNKYKVPLETLSLNLALVLGTAGLPHILIRFYTVKDAKTARTSVVSATWIIGVFYIMTVFLGFGAAAFVGFDAITAADQAGNMAAPLLAKALGGDFLFAFVSAIAFATILAVVTGLVLSAASAFAHDIYSQIIRKGEATEKEQMKAARWASVAVSVLSILLAIFAQSLNVAFLVALAFAVAASANLPLIVFTVFWKRFNASGALWGSLTGLISALVLVSMSPSVWDPAGGAIFTGDPLIPLSNPGIISIPLGFLGAWLGTVLSSDKTIDEDTFAEIQVKAHTGVHMEQE"@en ; - sybio:accession "P39599"^^xsd:string , "BSU38240"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; +bo:11065 a sybio:Protein , bo:356 , bo:353 , owl:NamedIndividual ; + rdfs:comment "Cell division ATP-binding protein ftsE"@en , "cell-division ABC transporter (ATP-binding protein);BSU35260"@en ; + rdfs:label "BSU35260"@en , "ftsE"@en , "FtsE"@en ; + sybio:AA "MIEMKEVYKAYPNGVKALNGISVTIHPGEFVYVVGPSGAGKSTFIKMIYREEKPTKGQILINHKDLATIKEKEIPFVRRKIGVVFQDFKLLPKLTVFENVAFALEVIGEQPSVIKKRVLEVLDLVQLKHKARQFPDQLSGGEQQRVSIARSIVNNPDVVIADEPTGNLDPDTSWEVMKTLEEINNRGTTVVMATHNKEIVNTMKKRVIAIEDGIIVRDESRGEYGSYD"@en ; + sybio:accession "O34814"^^xsd:string , "BSU35260"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30641 ; + sybio:encodedBy bo:30573 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "54240.99"^^xsd:string ; - sybio:pI "8.78701"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:hasFunction , , , ; + sybio:hasRole "1.7 : Cell division"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "25618.595"^^xsd:string ; + sybio:pI "8.014549"^^xsd:string ; + sybio:productType "cp : cell process"^^xsd:string ; sybio:taxId "[224308, 1423]"@en ; - tawny:name "11153"@en . + tawny:name "11065"@en . bo:26463 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Chorismate mutase;derived protein"@en , "BSU22690;chorismate mutase"@en ; @@ -350402,6 +350383,25 @@ bo:26463 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "224308"@en ; tawny:name "26463"@en . +bo:11153 a owl:NamedIndividual , sybio:Protein , bo:490 ; + rdfs:comment "Uncharacterized symporter ywcA;"@en , "putative acetate Na+-dependent symporter;BSU38240"@en ; + rdfs:label "YwcA"@en , "ywcA"@en , "Ipa-31r"@en , "BSU38240"@en ; + sybio:AA "MNMTAFLLFLAIVGLTLIITYFAAKRTKTTSEFYTAGGGLTGVQNGLAIAGDYMSAASFLGIAGMIALYGFDGFFYSIGFLVAYLVVLYIVAEPLRNLGKYTMADMIAARFKEKKIRGVAALNTIAISTFYMIAQLVGAGALIKLLLGLDYTAAVLIVGVLMTIYVVFGGMIATSWVQIIKAVLLMAGTLVISIIVFSKFGFSLNTMFEQMKTATPLGADFLNPGNKYKVPLETLSLNLALVLGTAGLPHILIRFYTVKDAKTARTSVVSATWIIGVFYIMTVFLGFGAAAFVGFDAITAADQAGNMAAPLLAKALGGDFLFAFVSAIAFATILAVVTGLVLSAASAFAHDIYSQIIRKGEATEKEQMKAARWASVAVSVLSILLAIFAQSLNVAFLVALAFAVAASANLPLIVFTVFWKRFNASGALWGSLTGLISALVLVSMSPSVWDPAGGAIFTGDPLIPLSNPGIISIPLGFLGAWLGTVLSSDKTIDEDTFAEIQVKAHTGVHMEQE"@en ; + sybio:accession "P39599"^^xsd:string , "BSU38240"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30641 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "54240.99"^^xsd:string ; + sybio:pI "8.78701"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11153"@en . + bo:30041 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21100"@en ; rdfs:label "yonG"@en , "BSU21100"@en ; @@ -350504,11 +350504,11 @@ sybio:dephosphorylatedBy rdfs:label "RNA binding"@en , "GO:0003723"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1805 \"RNA binding\""^^xsd:string ; + owl:hasValue "GO:0003723"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003723"^^xsd:string ; + owl:hasValue "1805 \"RNA binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -350766,11 +350766,11 @@ bo:32901 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004640"^^xsd:string ; + owl:hasValue "5.3.1.24"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.24"^^xsd:string ; + owl:hasValue "GO:0004640"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -351112,15 +351112,15 @@ bo:14842 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "multicopper ferroxidase iron transport mediator"@en , "zinc iron permease"@en , "GO:0005381"@en , "transmembrane iron ion permease"@en , "iron ion transmembrane transporter"@en , "transmembrane iron permease"@en , "iron transporter"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005381"^^xsd:string ; + owl:hasValue "GO:0005382"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005382"^^xsd:string ; + owl:hasValue "GO:0016033"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016033"^^xsd:string ; + owl:hasValue "GO:0005381"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -351220,15 +351220,15 @@ bo:21882 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "inorganic pyrophosphatase"@en , "inorganic diphosphatase"@en , "pyrophosphate phosphohydrolase"@en , "diphosphate phosphohydrolase"@en , "GO:0004427"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "INORGPYROPHOSPHAT-RXN"^^xsd:string ; + owl:hasValue "3.6.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004427"^^xsd:string ; + owl:hasValue "INORGPYROPHOSPHAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.1"^^xsd:string ; + owl:hasValue "GO:0004427"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -351269,11 +351269,11 @@ bo:21970 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "pyrophosphorylase"@en , "nicotinate mononucleotide adenylyltransferase"@en , "diphosphorylase"@en , "ATP:nicotinate-nucleotide adenylyltransferase"@en , "deamido-NAD+ pyrophosphorylase"@en , "NaMN-ATase"@en , "nicotinic acid mononucleotide adenylyltransferase"@en , "ATP:nicotinate-ribonucleotide adenylyltransferase"@en , "GO:0004515"@en , "deamidonicotinamide adenine dinucleotide pyrophosphorylase"@en , "nicotinate-nucleotide adenylyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NICONUCADENYLYLTRAN-RXN"^^xsd:string ; + owl:hasValue "GO:0004515"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004515"^^xsd:string ; + owl:hasValue "NICONUCADENYLYLTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -351289,11 +351289,11 @@ bo:21970 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0019825"@en , "oxygen binding"@en , "cytochrome P450"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019825"^^xsd:string ; + owl:hasValue "4477 \"oxygen binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4477 \"oxygen binding\""^^xsd:string ; + owl:hasValue "GO:0019825"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -351330,15 +351330,15 @@ bo:15583 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E2.1.1.13"@en , "METH"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0646"^^xsd:string ; + owl:hasValue "0008705"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008705"^^xsd:string ; + owl:hasValue "COG1410"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1410"^^xsd:string ; + owl:hasValue "COG0646"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -351699,18 +351699,18 @@ bo:21933 a sybio:Reaction , owl:NamedIndividual ; a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sugar(out) = protein histidine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport."@en ; - rdfs:label "protein-Np-phosphohistidine-sugar phosphotransferase"@en , "PEP-dependent phosphotransferase enzyme II"@en , "ribonucleic acid formation factor gene glC"@en , "enzyme IIl4ac"@en , "phosphotransfer-driven group translocator"@en , "phosphohistidinoprotein-hexose phosphoribosyltransferase"@en , "gene bglC RNA formation factors"@en , "protein-Npi-phosphohistidine:sugar N-pros-phosphotransferase"@en , "PEP--sugar phosphotransferase enzyme II"@en , "gene glC proteins"@en , "protein-N(PI)-phosphohistidine-sugar phosphotransferase"@en , "sucrose phosphotransferase system II"@en , "GO:0008982"@en , "PTS permease"@en , "phosphoenolpyruvate-sugar phosphotransferase enzyme II"@en , "group translocator"@en , "protein specific or class gene bglC"@en , "protein-Npi-phosphohistidine-sugar phosphotransferase"@en , "protein-Npi-phospho-L-histidine:sugar Npi-phosphotransferase"@en , "protein-Npi-phospho-L-histidine:sugar N-pros-phosphotransferase"@en , "phosphohistidinoprotein-hexose phosphotransferase"@en , "phosphoprotein factor-hexose phosophotransferase"@en , "enzyme II of the phosphotransferase system"@en , "PTS transporter"@en , "phosphotransferase phosphohistidinoprotein-hexose"@en ; + rdfs:label "protein-Np-phosphohistidine-sugar phosphotransferase"@en , "PEP-dependent phosphotransferase enzyme II"@en , "ribonucleic acid formation factor gene glC"@en , "enzyme IIl4ac"@en , "phosphohistidinoprotein-hexose phosphoribosyltransferase"@en , "phosphotransfer-driven group translocator"@en , "gene bglC RNA formation factors"@en , "protein-Npi-phosphohistidine:sugar N-pros-phosphotransferase"@en , "PEP--sugar phosphotransferase enzyme II"@en , "gene glC proteins"@en , "protein-N(PI)-phosphohistidine-sugar phosphotransferase"@en , "sucrose phosphotransferase system II"@en , "GO:0008982"@en , "PTS permease"@en , "phosphoenolpyruvate-sugar phosphotransferase enzyme II"@en , "group translocator"@en , "protein specific or class gene bglC"@en , "protein-Npi-phosphohistidine-sugar phosphotransferase"@en , "protein-Npi-phospho-L-histidine:sugar Npi-phosphotransferase"@en , "protein-Npi-phospho-L-histidine:sugar N-pros-phosphotransferase"@en , "phosphohistidinoprotein-hexose phosphotransferase"@en , "phosphoprotein factor-hexose phosophotransferase"@en , "enzyme II of the phosphotransferase system"@en , "PTS transporter"@en , "phosphotransferase phosphohistidinoprotein-hexose"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.69"^^xsd:string ; + owl:hasValue "GO:0015456"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015456"^^xsd:string ; + owl:hasValue "GO:0008982"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015455"^^xsd:string ; + owl:hasValue "2.7.1.69"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -351718,7 +351718,7 @@ bo:21933 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008982"^^xsd:string ; + owl:hasValue "GO:0015455"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -351779,23 +351779,13 @@ bo:15722 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00825+K05825"@en ; tawny:name "15722"@en . -bo:16376 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "nitrilase [EC:3.5.5.1]"@en ; - rdfs:label "E3.5.5.1"@en ; - sybio:accession "COG0388"^^xsd:string , "0000257"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16377 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01501"@en ; - tawny:name "16376"@en . - a owl:Class , sybio:BiologicalProcess , owl:NamedIndividual ; rdfs:comment "The process whereby new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands."@en ; rdfs:label "GO:0006261"@en , "DNA-dependent DNA replication"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006261"^^xsd:string ; + owl:hasValue "GO:0006263"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -351803,13 +351793,23 @@ bo:16376 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006263"^^xsd:string ; + owl:hasValue "GO:0006261"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:hasPart , , , , . +bo:16376 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "nitrilase [EC:3.5.5.1]"@en ; + rdfs:label "E3.5.5.1"@en ; + sybio:accession "COG0388"^^xsd:string , "0000257"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16377 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01501"@en ; + tawny:name "16376"@en . + bo:15810 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "histone-lysine N-methyltransferase SETD7 [EC:2.1.1.43]"@en ; rdfs:label "SETD7"@en ; @@ -351820,16 +351820,6 @@ bo:15810 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433"@en ; tawny:name "15810"@en . -bo:16464 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; - rdfs:label "CLOL"@en ; - sybio:accession "Q8GHC3"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16463 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; - tawny:name "16464"@en . - bo:28047 a owl:NamedIndividual , sybio:RBS ; rdfs:label "yeaA_RBS"@en ; sybio:NA "AACAAAAGGAGCTGCTTTTT"^^xsd:string ; @@ -351840,6 +351830,16 @@ bo:28047 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:30869 ; tawny:name "28047"@en . +bo:16464 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; + rdfs:label "CLOL"@en ; + sybio:accession "Q8GHC3"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16463 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; + tawny:name "16464"@en . + bo:16552 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "diacylglycerol cholinephosphotransferase [EC:2.7.8.2]"@en ; rdfs:label "CPT1"@en , "CHPT1"@en ; @@ -351863,6 +351863,16 @@ bo:28135 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28134 ; tawny:name "28135"@en . +bo:28223 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yraG_RBS"@en ; + sybio:NA "TAAAAGGAGGTTACATCAAT"^^xsd:string ; + sybio:begin "2752782"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "2752801"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31862 ; + tawny:name "28223"@en . + bo:16640 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "glutathione synthase [EC:6.3.2.3]"@en ; rdfs:label "GSHB"@en , "E6.3.2.3"@en ; @@ -351885,16 +351895,6 @@ bo:22498 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22498"@en . -bo:28223 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yraG_RBS"@en ; - sybio:NA "TAAAAGGAGGTTACATCAAT"^^xsd:string ; - sybio:begin "2752782"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2752801"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31862 ; - tawny:name "28223"@en . - bo:22586 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "hydroxybenzoquinone reductase - reversible"@en ; rdfs:label "NAD oxidoreductase"@en , "cpd:C07103 <=> cpd:C07103"@en , "1,2,4-trihydroxybenzene"@en , "C07103 + C00004 + C00080 <=> C02814 + C00003"@en ; @@ -352127,17 +352127,6 @@ bo:17381 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00048"@en ; tawny:name "17381"@en . -bo:492 a owl:Class ; - rdfs:label "COG3835"@en ; - rdfs:subClassOf bo:223 , bo:210 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3835"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "492"@en . - bo:1224 a owl:Class ; rdfs:label "COG3507"@en ; rdfs:subClassOf bo:365 , sybio:COG ; @@ -352149,16 +352138,16 @@ bo:1224 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1224"@en . -bo:580 a owl:Class ; - rdfs:label "COG3402"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:492 a owl:Class ; + rdfs:label "COG3835"@en ; + rdfs:subClassOf bo:223 , bo:210 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3402"^^xsd:string ; + owl:hasValue "COG3835"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "580"@en . + tawny:name "492"@en . bo:29052 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU15240"@en ; @@ -352199,6 +352188,17 @@ bo:1312 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1312"@en . +bo:580 a owl:Class ; + rdfs:label "COG3402"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG3402"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "580"@en . + bo:29140 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU30130"@en ; sybio:accession "BSU30130"^^xsd:string ; @@ -352284,6 +352284,14 @@ bo:4686 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4685 ; tawny:name "4686"@en . +bo:4774 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yhbF"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:32045 ; + sybio:operonGenes "yhbF"@en ; + tawny:name "4774"@en . + bo:16427 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "novobiocin biosynthesis protein NovJ"@en ; rdfs:label "NOVJ"@en ; @@ -352294,14 +352302,6 @@ bo:16427 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12703"@en ; tawny:name "16427"@en . -bo:4774 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yhbF"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:32045 ; - sybio:operonGenes "yhbF"@en ; - tawny:name "4774"@en . - bo:4862 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yhjCB"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -352310,14 +352310,6 @@ bo:4862 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yhjC,yhjB"@en ; tawny:name "4862"@en . -bo:16515 a sybio:KOPR , owl:NamedIndividual ; - rdfs:label "E1.1.2.-"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16514 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05888"@en ; - tawny:name "16515"@en . - a owl:Class ; rdfs:comment "The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically."@en ; @@ -352334,6 +352326,14 @@ bo:16515 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16515 a sybio:KOPR , owl:NamedIndividual ; + rdfs:label "E1.1.2.-"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16514 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05888"@en ; + tawny:name "16515"@en . + bo:16603 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "adenylylsulfate reductase, subunit B [EC:1.8.99.2]"@en ; rdfs:label "APRB"@en ; @@ -352587,11 +352587,11 @@ bo:17344 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E4.1.2.27"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008117"^^xsd:string ; + owl:hasValue "COG0076"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0076"^^xsd:string ; + owl:hasValue "0008117"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -352663,15 +352663,15 @@ bo:29015 a owl:NamedIndividual , sybio:CDS ; rdfs:label "isochorismatase"@en , "2 3-dihydroxy-2 3-dihydrobenzoate synthase"@en , "2 3 dihydro-2 3 dihydroxybenzoate synthase"@en , "GO:0008908"@en , "2 3-dihydroxy-2 3-dihydrobenzoic synthase"@en , "isochorismate pyruvate-hydrolase"@en , "2 3-dihydro-2 3-dihydroxybenzoate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ISOCHORMAT-RXN"^^xsd:string ; + owl:hasValue "GO:0008908"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008908"^^xsd:string ; + owl:hasValue "3.3.2.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.3.2.1"^^xsd:string ; + owl:hasValue "ISOCHORMAT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -353278,6 +353278,17 @@ bo:30469 a owl:NamedIndividual , sybio:CDS ; "244.0"@en ; tawny:name "30469"@en . +bo:11669 a owl:Class ; + rdfs:comment "Abstract referenced KO Pathway"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:MAP07034"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11669"@en . + bo:26979 a bo:498 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU12230;putative enzyme"@en , "Uncharacterized protein yjjA;derived protein"@en ; rdfs:label "YjjA"@en , "BSU12230"@en , "yjjA"@en ; @@ -353294,17 +353305,6 @@ bo:26979 a bo:498 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26979"@en . -bo:11669 a owl:Class ; - rdfs:comment "Abstract referenced KO Pathway"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:MAP07034"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11669"@en . - bo:18048 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "protochlorophyllide reductase [EC:1.3.1.33]"@en ; rdfs:label "E1.3.1.33"@en , "POR"@en ; @@ -354125,16 +354125,6 @@ bo:31349 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "31349"@en . -bo:27859 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "mrgA_RBS"@en ; - sybio:NA "CACAAGGAGGACGTTATCTT"^^xsd:string ; - sybio:begin "3383545"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3383564"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28857 ; - tawny:name "27859"@en . - bo:12549 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C15H18N2O8S"@en ; rdfs:label "C15H18N2O8S"@en , "7-Glutarylaminocephalosporanate"@en , "(7R)-7-(4-Carboxybutanamido)cephalosporanate"@en ; @@ -354146,6 +354136,16 @@ bo:12549 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C15666"@en ; tawny:name "12549"@en . +bo:27859 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "mrgA_RBS"@en ; + sybio:NA "CACAAGGAGGACGTTATCTT"^^xsd:string ; + sybio:begin "3383545"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3383564"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28857 ; + tawny:name "27859"@en . + bo:7275 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Surfactin synthetase"@en ; rdfs:label "Q45675"@en ; @@ -354681,7 +354681,7 @@ bo:13642 a sybio:Compound , owl:NamedIndividual ; rdfs:label "GO:0004181"@en , "metallocarboxypeptidase"@en ; rdfs:subClassOf sybio:MolecularFunction , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004181"^^xsd:string ; + owl:hasValue "8516 \"metallocarboxypeptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -354689,7 +354689,7 @@ bo:13642 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8516 \"metallocarboxypeptidase activity\""^^xsd:string ; + owl:hasValue "GO:0004181"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -354979,11 +354979,11 @@ bo:14471 a sybio:Compound , owl:NamedIndividual ; rdfs:label "Moco biosynthesis"@en , "molybdenum cofactor biosynthetic process"@en , "Mo-molybdopterin cofactor formation"@en , "Mo-molybdopterin cofactor biosynthetic process"@en , "Mo-molybdopterin cofactor biosynthesis"@en , "Mo-molybdopterin cofactor synthesis"@en , "Moco biosynthetic process"@en , "Mo-molybdopterin cofactor anabolism"@en , "GO:0006777"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5354"^^xsd:string ; + owl:hasValue "GO:0006777"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006777"^^xsd:string ; + owl:hasValue "PWY-5354"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -354995,95 +354995,95 @@ bo:14471 a sybio:Compound , owl:NamedIndividual ; rdfs:label "amino acid transport"@en , "GO:0006865"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470401 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "449281 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006865"^^xsd:string ; + owl:hasValue "581979 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526725 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "488079 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449281 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "602616 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006866"^^xsd:string ; + owl:hasValue "568776 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542637 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "517899 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547953 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "597449 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "586032 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "536887 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599782 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "352230 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508045 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "598213 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536887 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "547953 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598213 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "552527 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602616 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "542637 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488079 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "GO:0006866"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "352230 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "508045 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531498 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "526725 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597449 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "GO:0006865"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552527 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "470401 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517899 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "586032 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "558149 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "599782 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581979 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "592887 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592887 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "558149 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568776 \"Amino acid transport across the plasma membrane\""^^xsd:string ; + owl:hasValue "531498 \"Amino acid transport across the plasma membrane\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -355692,6 +355692,17 @@ bo:14610 a sybio:Compound , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27023 a sybio:MicroarrayExperiment , owl:NamedIndividual ; + rdfs:comment "B.subtilis DegU regulon, degU inactivation"@en ; + rdfs:label "ex0001761"@en ; + sybio:accession "ex0001761"^^xsd:string ; + sybio:controlExperiment "strain: ATCC 6051, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "17850253"^^xsd:string ; + sybio:targetExperiment "strain: WTF28 degU::cat, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; + tawny:name "27023"@en . + bo:21298 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "dGTP"@en , "cpd:C00361 => cpd:C00361"@en , "C00286 + C00022 <=> C00361 + C00074"@en , "pyruvate 2-O-phosphotransferase"@en ; @@ -355704,16 +355715,11 @@ bo:21298 a owl:NamedIndividual , sybio:Reaction ; sybio:sharesIntermediate bo:21145 ; tawny:name "21298"@en . -bo:27023 a sybio:MicroarrayExperiment , owl:NamedIndividual ; - rdfs:comment "B.subtilis DegU regulon, degU inactivation"@en ; - rdfs:label "ex0001761"@en ; - sybio:accession "ex0001761"^^xsd:string ; - sybio:controlExperiment "strain: ATCC 6051, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "17850253"^^xsd:string ; - sybio:targetExperiment "strain: WTF28 degU::cat, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; - tawny:name "27023"@en . +bo:27111 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigF_spoIVB"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27111"@en . bo:21386 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; @@ -355727,12 +355733,6 @@ bo:21386 a owl:Class , owl:NamedIndividual , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "21386"@en . -bo:27111 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigF_spoIVB"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27111"@en . - bo:21474 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.7.4.10"@en ; @@ -355755,15 +355755,15 @@ bo:21474 a sybio:EC , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004019"^^xsd:string ; + owl:hasValue "6.3.4.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.4.4"^^xsd:string ; + owl:hasValue "ADENYLOSUCCINATE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ADENYLOSUCCINATE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004019"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -355790,11 +355790,11 @@ bo:21562 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.3.5"^^xsd:string ; + owl:hasValue "CHORISMATE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CHORISMATE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "4.2.3.5"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -356612,6 +356612,16 @@ bo:10594 a bo:1867 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10594"@en . +bo:25992 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "P-450 reductase is flavoprotein and re-reduced by NADPHfollowing after R04759 - reversible"@en ; + rdfs:label "C00468 + C00058 + C03161 + C00001 <=> C05297 + C00007 + C03024"@en , "cpd:C00468 <=> cpd:C00468"@en , "Aromatase"@en ; + sybio:accession "RN:R02351"^^xsd:string ; + sybio:catalyzingClass bo:20984 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25992"@en . + bo:10682 a sybio:Protein , bo:450 , owl:NamedIndividual ; rdfs:comment "BSU05580;putative transcriptional regulator"@en , "Uncharacterized HTH-type transcriptional regulator ydgC"@en ; rdfs:label "ydgC"@en , "BSU05580"@en , "YdgC"@en ; @@ -356630,16 +356640,6 @@ bo:10682 a sybio:Protein , bo:450 , owl:NamedIndividual ; tawny:name "10682"@en ; owl:sameAs bo:2645 . -bo:25992 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "P-450 reductase is flavoprotein and re-reduced by NADPHfollowing after R04759 - reversible"@en ; - rdfs:label "C00468 + C00058 + C03161 + C00001 <=> C05297 + C00007 + C03024"@en , "cpd:C00468 <=> cpd:C00468"@en , "Aromatase"@en ; - sybio:accession "RN:R02351"^^xsd:string ; - sybio:catalyzingClass bo:20984 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25992"@en . - bo:17061 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "phosphatidylinositol 3-kinase [EC:2.7.1.137]"@en ; rdfs:label "E2.7.1.137"@en , "PIK3C3"@en , "VPS34"@en ; @@ -356756,11 +356756,11 @@ bo:18916 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008801"^^xsd:string ; + owl:hasValue "BETA-PHOSPHOGLUCOMUTASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BETA-PHOSPHOGLUCOMUTASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008801"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -356796,11 +356796,11 @@ bo:4278 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0000179"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000179"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -357012,6 +357012,15 @@ bo:5195 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:5194 ; tawny:name "5195"@en . +bo:25867 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "unclear reaction - reversible"@en ; + rdfs:label "C11691 <=> C09107"@en , "cpd:C11691 <=> cpd:C11691"@en ; + sybio:accession "RN:R05854"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25867"@en . + bo:10557 a sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized protein ywoF"@en , "BSU36460;putative pectate lyase"@en ; rdfs:label "ywoF"@en , "YwoF"@en , "BSU36460"@en ; @@ -357030,15 +357039,6 @@ bo:10557 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10557"@en . -bo:25867 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "unclear reaction - reversible"@en ; - rdfs:label "C11691 <=> C09107"@en , "cpd:C11691 <=> cpd:C11691"@en ; - sybio:accession "RN:R05854"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25867"@en . - bo:5283 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ypuD_terminator"@en ; sybio:NA "AAAAACATCACCTTTCGGATCGAAGGGTGATGTTTTGTTTTTCTCAA"^^xsd:string ; @@ -357388,6 +357388,25 @@ bo:30186 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30186"@en . +bo:26696 a owl:NamedIndividual , sybio:Protein , bo:570 ; + rdfs:comment "C4-dicarboxylate-binding protein dctB;derived protein"@en , "C4-dicarboxylate binding protein;BSU04440"@en ; + rdfs:label "DctB"@en , "YdbE"@en , "BSU04440"@en , "dctB"@en ; + sybio:AA "MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLAYWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELIRELLELRKDS"@en ; + sybio:accession "P96600"^^xsd:string , "BSU04440"^^xsd:string , "16077511"^^xsd:string , "938226"^^xsd:string ; + sybio:biologicalProcess "16.12 : Sense"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:28542 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:expressedBy bo:26237 ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , ; + sybio:molecularWeight "39860.495"^^xsd:string ; + sybio:pI "5.068153"^^xsd:string ; + sybio:productType "f : factor"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26696"@en . + bo:11386 a bo:553 , sybio:Protein , bo:552 , owl:NamedIndividual ; rdfs:comment "Penicillin-binding protein 3"@en , "penicillin-binding lipoprotein 3;BSU04140"@en ; rdfs:label "YcsM"@en , "BSU04140"@en , "YzsA"@en , "PbpC"@en , "pbpC"@en ; @@ -357408,25 +357427,6 @@ bo:11386 a bo:553 , sybio:Protein , bo:552 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "11386"@en . -bo:26696 a owl:NamedIndividual , sybio:Protein , bo:570 ; - rdfs:comment "C4-dicarboxylate-binding protein dctB;derived protein"@en , "C4-dicarboxylate binding protein;BSU04440"@en ; - rdfs:label "DctB"@en , "YdbE"@en , "BSU04440"@en , "dctB"@en ; - sybio:AA "MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLAYWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELIRELLELRKDS"@en ; - sybio:accession "P96600"^^xsd:string , "BSU04440"^^xsd:string , "16077511"^^xsd:string , "938226"^^xsd:string ; - sybio:biologicalProcess "16.12 : Sense"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:28542 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:expressedBy bo:26237 ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , ; - sybio:molecularWeight "39860.495"^^xsd:string ; - sybio:pI "5.068153"^^xsd:string ; - sybio:productType "f : factor"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26696"@en . - bo:30274 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26550"@en ; rdfs:label "BSU26550"@en , "yrkD"@en ; @@ -357452,6 +357452,24 @@ bo:30274 a owl:NamedIndividual , sybio:CDS ; "21.0"@en ; tawny:name "30274"@en . +bo:26784 a bo:1252 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Putative gamma-glutamyltransferase ywrD;derived protein"@en , "BSU36100;putative gamma-glutamyltransferase"@en ; + rdfs:label "ywrD"@en , "YwrD"@en , "BSU36100"@en ; + sybio:AA "MNKSVIGTKQMVVSPHYLASQAGNRILDKGGNAFDAAVAVSACLAVVYPHMTGLGGDSFWLTFHQETKAVKVYNGSGRSGKNVTRDVYKGKSAIPLRGIDSAITVPGMVDSWDAVLKEYGRLSLADVLEPARDYAQNGFPVSADQCRHTEKNIELLASTPYTADIFTRRGKAPVPGERFVQKELADSLNLIAEKGRSAFYEGDLAQRIVSHLQNNGSYMTIDDFKAHRGEWAAPVSSDYRGYSVYQAPPNSQGFTGLLTLNILENYDFTQIEHGSFEYYHVLVEALKKSFLDRDAVLTDPAFADIPLERLLDKRYAKQLAEEIGYLAIPAESRPVGSDTAYAAVIDADGNAVSFIQSLYFEFGSAVTAGDTGILLQNRGSFFSLDENHVNTLEPRKRTFHTLMPAMVCKGGKPKILYGTQGGEGQPQTQTAIITRMLDYGMHPQQAISEPRWVWGRTWGEEYEGLRVEGRFTDKTIQKLKDSGHLVEVVGDYDPLMGQAAAIKVDEEGFLQGGADPRGDGAAVGI"@en ; + sybio:accession "O05218"^^xsd:string , "BSU36100"^^xsd:string , "936884"^^xsd:string , "16080663"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32657 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:interactsWith bo:26403 ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "57484.45"^^xsd:string ; + sybio:pI "5.55201"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26784"@en . + bo:11474 a sybio:Protein , owl:NamedIndividual , bo:403 ; rdfs:comment "Sensor histidine kinase ykoH"@en , "BSU13260;two-component sensor histidine kinase [YkoG]"@en ; rdfs:label "YkoH"@en , "BSU13260"@en , "ykoH"@en ; @@ -357472,35 +357490,6 @@ bo:11474 a sybio:Protein , owl:NamedIndividual , bo:403 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11474"@en . -bo:26784 a bo:1252 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Putative gamma-glutamyltransferase ywrD;derived protein"@en , "BSU36100;putative gamma-glutamyltransferase"@en ; - rdfs:label "ywrD"@en , "YwrD"@en , "BSU36100"@en ; - sybio:AA "MNKSVIGTKQMVVSPHYLASQAGNRILDKGGNAFDAAVAVSACLAVVYPHMTGLGGDSFWLTFHQETKAVKVYNGSGRSGKNVTRDVYKGKSAIPLRGIDSAITVPGMVDSWDAVLKEYGRLSLADVLEPARDYAQNGFPVSADQCRHTEKNIELLASTPYTADIFTRRGKAPVPGERFVQKELADSLNLIAEKGRSAFYEGDLAQRIVSHLQNNGSYMTIDDFKAHRGEWAAPVSSDYRGYSVYQAPPNSQGFTGLLTLNILENYDFTQIEHGSFEYYHVLVEALKKSFLDRDAVLTDPAFADIPLERLLDKRYAKQLAEEIGYLAIPAESRPVGSDTAYAAVIDADGNAVSFIQSLYFEFGSAVTAGDTGILLQNRGSFFSLDENHVNTLEPRKRTFHTLMPAMVCKGGKPKILYGTQGGEGQPQTQTAIITRMLDYGMHPQQAISEPRWVWGRTWGEEYEGLRVEGRFTDKTIQKLKDSGHLVEVVGDYDPLMGQAAAIKVDEEGFLQGGADPRGDGAAVGI"@en ; - sybio:accession "O05218"^^xsd:string , "BSU36100"^^xsd:string , "936884"^^xsd:string , "16080663"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32657 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:interactsWith bo:26403 ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "57484.45"^^xsd:string ; - sybio:pI "5.55201"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26784"@en . - -bo:11562 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00061"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00061"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11562"@en . - bo:30362 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU29910"@en ; rdfs:label "ytzH"@en , "BSU29910"@en ; @@ -357548,20 +357537,16 @@ bo:26872 a owl:NamedIndividual , sybio:Protein , bo:1018 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26872"@en . -bo:11650 a owl:NamedIndividual , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00511.png"@en ; - rdfs:label "Other glycan degradation"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00511"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:derivesFrom bo:11651 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00511"@en ; - tawny:name "11650"@en . +bo:11562 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00061"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00061"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11562"@en . bo:30450 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32370"@en ; @@ -357588,6 +357573,21 @@ bo:30450 a sybio:CDS , owl:NamedIndividual ; "201.0"@en ; tawny:name "30450"@en . +bo:11650 a owl:NamedIndividual , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00511.png"@en ; + rdfs:label "Other glycan degradation"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00511"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:derivesFrom bo:11651 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00511"@en ; + tawny:name "11650"@en . + bo:26960 a sybio:Protein , owl:NamedIndividual , bo:484 ; rdfs:comment "NH(3)-dependent NAD(+) synthetase;derived protein"@en , "BSU03130;ammonium-dependent NAD+ synthetase"@en ; rdfs:label "Gsp-81"@en , "TscBGH"@en , "NadE"@en , "OutB"@en , "BSU03130"@en , "nadE"@en ; @@ -358117,19 +358117,19 @@ bo:24026 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "FAD synthetase"@en , "adenosine triphosphate-riboflavine mononucleotide transadenylase"@en , "FAD pyrophosphorylase"@en , "ATP:FMN adenylyltransferase"@en , "FMN adenylyltransferase"@en , "flavin adenine dinucleotide synthetase"@en , "adenosine triphosphate-riboflavin mononucleotide transadenylase"@en , "GO:0003919"@en , "riboflavine adenine dinucleotide adenylyltransferase"@en , "riboflavin adenine dinucleotide pyrophosphorylase"@en , "riboflavin mononucleotide adenylyltransferase"@en , "FAD diphosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.2"^^xsd:string ; + owl:hasValue "12494 \"FMN adenylyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12494 \"FMN adenylyltransferase activity\""^^xsd:string ; + owl:hasValue "2.7.7.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FADSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0003919"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003919"^^xsd:string ; + owl:hasValue "FADSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -358387,16 +358387,6 @@ bo:31330 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "31330"@en . -bo:27840 a sybio:Shim , owl:NamedIndividual ; - rdfs:label "cydA_RBS_upstream"@en ; - sybio:NA "A"^^xsd:string ; - sybio:begin "3979218"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3979218"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27839 ; - tawny:name "27840"@en . - bo:12530 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C5H14N2"@en ; rdfs:label "1,5-Diaminopentane"@en , "C5H14N2"@en , "Cadaverine"@en , "1,5-Pentanediamine"@en , "Pentamethylenediamine"@en ; @@ -358408,13 +358398,23 @@ bo:12530 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01672"@en ; tawny:name "12530"@en . +bo:27840 a sybio:Shim , owl:NamedIndividual ; + rdfs:label "cydA_RBS_upstream"@en ; + sybio:NA "A"^^xsd:string ; + sybio:begin "3979218"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3979218"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27839 ; + tawny:name "27840"@en . + a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin."@en ; rdfs:label "ribonucleoside diphosphate reductase"@en , "GO:0004748"@en , "ribonucleotide reductase"@en , "purine pyrimidine nucleoside diphosphate reduction"@en , "nucleoside diphosphate reductase"@en , "ribonucleoside-diphosphate reductase"@en , "RNR"@en , "ribonucleotide diphosphate reductase"@en , "2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"@en , "ribonucleoside 5'-diphosphate reductase"@en , "2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004748"^^xsd:string ; + owl:hasValue "RIBONUCLEOSIDE-DIP-REDUCTI-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -358422,7 +358422,7 @@ bo:12530 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBONUCLEOSIDE-DIP-REDUCTI-RXN"^^xsd:string ; + owl:hasValue "GO:0004748"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -359522,175 +359522,175 @@ bo:15918 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "protein folding"@en , "co-chaperone"@en , "chaperonin ATPase"@en , "beta-tubulin folding"@en , "non-chaperonin molecular chaperone ATPase"@en , "chaperonin-mediated tubulin folding"@en , "co-chaperonin"@en , "protein complex assembly multichaperone pathway"@en , "chaperone"@en , "GO:0006457"@en , "glycoprotein-specific chaperone"@en , "alpha-tubulin folding"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581613 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "557852 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595349 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "536535 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517425 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "568446 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487587 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "GO:0006457"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007024"^^xsd:string ; + owl:hasValue "585812 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585812 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "568411 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552207 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "390466 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507422 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "557798 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448770 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "487587 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448640 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "526394 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "390466 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "595349 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592510 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "517425 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568446 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "581613 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536535 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "595388 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547647 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "531205 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531207 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "GO:0007025"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552239 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "469768 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517525 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "487589 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542256 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "GO:0007024"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006457"^^xsd:string ; + owl:hasValue "531207 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568411 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "448770 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526394 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "507422 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "392033 \"Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding\""^^xsd:string ; + owl:hasValue "547647 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547600 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "Protein_folding"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531205 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "547600 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585814 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "GO:0007022"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592570 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "389960 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507545 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "592510 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007025"^^xsd:string ; + owl:hasValue "517525 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "389967 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "448640 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "389960 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "552239 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595388 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "389967 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007022"^^xsd:string ; + owl:hasValue "507545 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469885 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "592570 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536580 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "392033 \"Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542306 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "469885 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487589 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "585814 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557798 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "542306 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Protein_folding"^^xsd:string ; + owl:hasValue "581659 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526299 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "536580 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581659 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "552207 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469768 \"Chaperonin-mediated protein folding\""^^xsd:string ; + owl:hasValue "542256 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557852 \"Formation of tubulin folding intermediates by CCT/TriC\""^^xsd:string ; + owl:hasValue "526299 \"Chaperonin-mediated protein folding\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -359702,58 +359702,58 @@ bo:15918 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "glycine anabolism"@en , "GO:0006545"@en , "glycine formation"@en , "glycine biosynthetic process"@en , "glycine synthesis"@en , "glycine biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006545"^^xsd:string ; + owl:hasValue "GLYCINE-SYN2-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCINE-SYN2-PWY"^^xsd:string ; + owl:hasValue "GO:0006545"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16748 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "dextransucrase [EC:2.4.1.5]"@en ; - rdfs:label "E2.4.1.5"@en ; - sybio:accession "0047849"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16749 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00689"@en ; - tawny:name "16748"@en . - a sybio:BiologicalProcess , owl:NamedIndividual , owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes."@en ; - rdfs:label "fatty acid biosynthesis"@en , "fatty acid synthesis"@en , "fatty acid anabolism"@en , "GO:0006633"@en , "fatty acid biosynthetic process"@en , "fatty acid formation"@en ; + rdfs:label "fatty acid synthesis"@en , "fatty acid anabolism"@en , "GO:0006633"@en , "fatty acid biosynthetic process"@en , "fatty acid formation"@en , "fatty acid biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-4381"^^xsd:string ; + owl:hasValue "PWY-5156"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006633"^^xsd:string ; + owl:hasValue "FASYN-INITIAL-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FASYN-INITIAL-PWY"^^xsd:string ; + owl:hasValue "GO:0006633"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5156"^^xsd:string ; + owl:hasValue "PWY-4381"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Fatty_acid_synthesis"^^xsd:string ; + owl:hasValue "GO:0000037"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0000037"^^xsd:string ; + owl:hasValue "Fatty_acid_synthesis"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16748 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "dextransucrase [EC:2.4.1.5]"@en ; + rdfs:label "E2.4.1.5"@en ; + sybio:accession "0047849"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16749 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00689"@en ; + tawny:name "16748"@en . + bo:16836 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase[EC:2.6.1.-]"@en ; rdfs:label "ARNB"@en , "PMRH"@en ; @@ -359841,15 +359841,15 @@ bo:2198 a sybio:Protein , owl:NamedIndividual ; rdfs:label "acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase"@en , "glucosamine-1-phosphate N-acetyltransferase"@en , "acetyl-CoA:alpha-D-glucosamine-1-phosphate N-acetyltransferase"@en , "GO:0019134"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.157"^^xsd:string ; + owl:hasValue "GO:0019134"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019134"^^xsd:string ; + owl:hasValue "2.3.1.157-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.157-RXN"^^xsd:string ; + owl:hasValue "2.3.1.157"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -360325,31 +360325,31 @@ bo:23963 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0006508"@en , "proteolysis"@en , "ATP-dependent proteolysis"@en , "peptidolysis"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "159782 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "508017 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488060 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "449259 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470378 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "159782 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517878 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "GO:0006508"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006508"^^xsd:string ; + owl:hasValue "470378 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508017 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "488060 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449259 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; + owl:hasValue "517878 \"Removal of aminoterminal propeptides from gamma-carboxylated proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -360596,103 +360596,103 @@ bo:739 a owl:Class ; rdfs:label "GO:0032259"@en , "methylation"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542212 \"Methylation\""^^xsd:string ; + owl:hasValue "526665 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552526 \"Methylation\""^^xsd:string ; + owl:hasValue "517897 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Methylation"^^xsd:string ; + owl:hasValue "487423 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568775 \"Methylation\""^^xsd:string ; + owl:hasValue "598211 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547566 \"Methylation\""^^xsd:string ; + owl:hasValue "595589 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536886 \"Methylation\""^^xsd:string ; + owl:hasValue "156581 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "156581 \"Methylation\""^^xsd:string ; + owl:hasValue "507378 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581978 \"Methylation\""^^xsd:string ; + owl:hasValue "542212 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595589 \"Methylation\""^^xsd:string ; + owl:hasValue "531496 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "586029 \"Methylation\""^^xsd:string ; + owl:hasValue "536886 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448582 \"Methylation\""^^xsd:string ; + owl:hasValue "568775 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487423 \"Methylation\""^^xsd:string ; + owl:hasValue "GO:0032259"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517897 \"Methylation\""^^xsd:string ; + owl:hasValue "557763 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599770 \"Methylation\""^^xsd:string ; + owl:hasValue "602456 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592837 \"Methylation\""^^xsd:string ; + owl:hasValue "448582 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0032259"^^xsd:string ; + owl:hasValue "597447 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469711 \"Methylation\""^^xsd:string ; + owl:hasValue "Methylation"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598211 \"Methylation\""^^xsd:string ; + owl:hasValue "581978 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602456 \"Methylation\""^^xsd:string ; + owl:hasValue "599770 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600689 \"Methylation\""^^xsd:string ; + owl:hasValue "469711 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557763 \"Methylation\""^^xsd:string ; + owl:hasValue "552526 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526665 \"Methylation\""^^xsd:string ; + owl:hasValue "592837 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531496 \"Methylation\""^^xsd:string ; + owl:hasValue "586029 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597447 \"Methylation\""^^xsd:string ; + owl:hasValue "547566 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507378 \"Methylation\""^^xsd:string ; + owl:hasValue "600689 \"Methylation\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -361140,11 +361140,11 @@ bo:19198 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.4.1.159"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT1"^^xsd:string ; + owl:hasValue "0047230"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047230"^^xsd:string ; + owl:hasValue "GT1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -361158,39 +361158,39 @@ bo:19198 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "branched chain family amino acid breakdown"@en , "branched chain family amino acid catabolic process"@en , "GO:0009083"@en , "branched chain family amino acid degradation"@en , "branched chain family amino acid catabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547671 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "568363 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531120 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "70895 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70895 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "581565 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592461 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "487403 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597346 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "592461 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526243 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "469691 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557746 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "599707 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598192 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "536607 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542202 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "552158 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -361198,55 +361198,55 @@ bo:19198 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552158 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "531120 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600628 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "GO:0009083"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009083"^^xsd:string ; + owl:hasValue "547671 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595328 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "598192 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469691 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "600628 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517365 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "448562 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507355 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "542202 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448562 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "597346 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568363 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "595328 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536607 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "517365 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599707 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "507355 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487403 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "557746 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581565 \"Branched-chain amino acid catabolism\""^^xsd:string ; + owl:hasValue "526243 \"Branched-chain amino acid catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -361466,6 +361466,16 @@ bo:10098 a bo:1096 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10098"@en . +bo:25496 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C16337 + C00003 <=> C16338 + C00004 + C00080"@en , " <=> "@en ; + sybio:accession "RN:R07898"^^xsd:string ; + sybio:catalyzingClass bo:20945 , bo:20158 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25496"@en . + bo:10186 a owl:NamedIndividual , bo:605 , sybio:Protein ; rdfs:comment "Uncharacterized protein yobT"@en , "BSU19080;putative metal-dependent hydrolase"@en ; rdfs:label "YobT"@en , "BSU19080"@en , "yobT"@en ; @@ -361484,15 +361494,14 @@ bo:10186 a owl:NamedIndividual , bo:605 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10186"@en . -bo:25496 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "C16337 + C00003 <=> C16338 + C00004 + C00080"@en , " <=> "@en ; - sybio:accession "RN:R07898"^^xsd:string ; - sybio:catalyzingClass bo:20945 , bo:20158 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25496"@en . +bo:25584 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "oxidoreductionincomplete reaction - reversible"@en ; + rdfs:label "C06069 <=> C06070"@en , "cpd:C06069 <=> cpd:C06069"@en ; + sybio:accession "RN:R05089"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25584"@en . bo:10274 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized membrane protein yqzK"@en , "BSU23519;conserved hypothetical protein"@en ; @@ -361512,14 +361521,16 @@ bo:10274 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10274"@en . -bo:25584 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "oxidoreductionincomplete reaction - reversible"@en ; - rdfs:label "C06069 <=> C06070"@en , "cpd:C06069 <=> cpd:C06069"@en ; - sybio:accession "RN:R05089"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25584"@en . +bo:25672 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "G10612 + G00156 <=> G10619 + G00157"@en , "gl:G00156 <=> gl:G00156"@en ; + sybio:accession "RN:R05928"^^xsd:string ; + sybio:catalyzedBy bo:19012 , bo:19009 , bo:19006 , bo:19003 ; + sybio:catalyzingClass bo:25673 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25672"@en . bo:10362 a bo:1313 , owl:NamedIndividual , sybio:Protein , bo:249 , bo:888 ; rdfs:comment "BSU27670;putative putative translocase with flippase function for teichoic acid synthesis; involved in spore cortex synthesis (stage V sporulation);"@en , "Stage V sporulation protein B"@en ; @@ -361540,17 +361551,6 @@ bo:10362 a bo:1313 , owl:NamedIndividual , sybio:Protein , sybio:taxId "[224308, 1423]"@en ; tawny:name "10362"@en . -bo:25672 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "G10612 + G00156 <=> G10619 + G00157"@en , "gl:G00156 <=> gl:G00156"@en ; - sybio:accession "RN:R05928"^^xsd:string ; - sybio:catalyzedBy bo:19012 , bo:19009 , bo:19006 , bo:19003 ; - sybio:catalyzingClass bo:25673 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25672"@en . - bo:6679 a owl:NamedIndividual , sybio:TF ; rdfs:comment "transcriptional regulator;"@en ; rdfs:label "SacV"@en , "BSU04830"@en , "YdzC"@en ; @@ -361559,6 +361559,18 @@ bo:6679 a owl:NamedIndividual , sybio:TF ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "6679"@en . +bo:25760 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.115"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.115"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25760"@en . + bo:10450 a owl:NamedIndividual , bo:1177 , sybio:Protein ; rdfs:comment "Probable 3'-5' exonuclease kapD"@en , "BSU31470;putative exoribonuclease (3'-5');"@en ; rdfs:label "BSU31470"@en , "kapD"@en , "KapD"@en , "YugB"@en ; @@ -361578,18 +361590,6 @@ bo:10450 a owl:NamedIndividual , bo:1177 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10450"@en . -bo:25760 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.115"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.115"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25760"@en . - bo:6767 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU32190"@en ; rdfs:label "BSU32190"@en , "YuzB"@en ; @@ -362311,19 +362311,19 @@ bo:32851 a sybio:CDS , owl:NamedIndividual ; rdfs:label "OMPdcase"@en , "orotidine-5'-phosphate carboxy-lyase"@en , "orotate monophosphate decarboxylase"@en , "UMP synthase"@en , "orotodylate decarboxylase"@en , "OMP decarboxylase"@en , "ODCase"@en , "orotidylic decarboxylase"@en , "orotidine-5'-monophosphate decarboxylase"@en , "orotic decarboxylase"@en , "orotidine 5'-phosphate decarboxylase"@en , "orotidine phosphate decarboxylase"@en , "GO:0004590"@en , "orotidine monophosphate decarboxylase"@en , "OMP-DC"@en , "orotate decarboxylase"@en , "uridine 5'-monophosphate synthase"@en , "orotidylic acid decarboxylase"@en , "orotidine-5'-phosphate decarboxylase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.23"^^xsd:string ; + owl:hasValue "OROTPDECARB-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "OROTPDECARB-RXN"^^xsd:string ; + owl:hasValue "GO:0004590"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12548 \"orotidine-5'-phosphate decarboxylase activity\""^^xsd:string ; + owl:hasValue "4.1.1.23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004590"^^xsd:string ; + owl:hasValue "12548 \"orotidine-5'-phosphate decarboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -362350,6 +362350,26 @@ bo:26288 a owl:NamedIndividual , sybio:Protein , bo:853 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26288"@en . +bo:26376 a owl:NamedIndividual , bo:654 , sybio:Protein , bo:1135 ; + rdfs:comment "derived protein;Succinyl-CoA ligase [ADP-forming] subunit alpha"@en , "BSU16100;succinyl-CoA synthetase (alpha subunit)"@en ; + rdfs:label "sucD"@en , "SucD"@en , "BSU16100"@en ; + sybio:AA "MSVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGKKTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWVKANMTKPVVGFIGGKTAPPGKRMGHAGAIISGGKGTADEKIKTLNACGIEVAETPSVMGETLIKVLKEKNLFETCKTH"@en ; + sybio:accession "P80865"^^xsd:string , "937797"^^xsd:string , "16078673"^^xsd:string , "BSU16100"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28641 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "2.1.3 : TCA cycle"^^xsd:string ; + sybio:interactsWith bo:26344 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "31380.795"^^xsd:string ; + sybio:pI "5.664482"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26575 , bo:26574 , bo:26599 , bo:26419 , bo:26573 , bo:26418 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26376"@en . + bo:11066 a owl:NamedIndividual , sybio:Protein , bo:1778 ; rdfs:comment "peptide chain release factor 2;BSU35290;"@en , "Peptide chain release factor 2"@en ; rdfs:label "PrfB"@en , "BSU35290"@en , "prfB"@en ; @@ -362370,25 +362390,25 @@ bo:11066 a owl:NamedIndividual , sybio:Protein , bo:1778 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11066"@en . -bo:26376 a owl:NamedIndividual , bo:654 , sybio:Protein , bo:1135 ; - rdfs:comment "derived protein;Succinyl-CoA ligase [ADP-forming] subunit alpha"@en , "BSU16100;succinyl-CoA synthetase (alpha subunit)"@en ; - rdfs:label "sucD"@en , "SucD"@en , "BSU16100"@en ; - sybio:AA "MSVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGKKTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWVKANMTKPVVGFIGGKTAPPGKRMGHAGAIISGGKGTADEKIKTLNACGIEVAETPSVMGETLIKVLKEKNLFETCKTH"@en ; - sybio:accession "P80865"^^xsd:string , "937797"^^xsd:string , "16078673"^^xsd:string , "BSU16100"^^xsd:string ; +bo:26464 a bo:1361 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "3-dehydroquinate synthase;BSU22700;"@en , "3-dehydroquinate synthase;derived protein"@en ; + rdfs:label "AroB"@en , "aroB"@en , "BSU22700"@en ; + sybio:AA "MKTLHVQTASSSYPVFIGQGIRKKACELLTSLNRPLTRIMFVTDEEVDRLYGDEMLHLLQEKWPVKKVTVPSGEQAKSMDMYTKLQSEAIRFHMDRSSCIIAFGGGVVGDLAGFVAATFMRGIDFIQMPTTLLAHDSAVGGKVAVNHPLGKNLIGAFYQPKAVLYDTDFLRSLPEKELRSGMAEVIKHAFIYDRAFLEELLNIHSLRDITNDQLNDMIFKGISIKASVVQQDEKEEGIRAYLNFGHTLGHAVEAEYGYGQITHGDAVALGMQFALYISEKTVGCEMDRKRLVSWLKSLGYPSQIRKETETSVLLNRMMNDKKTRGGKIQFIVLNELGKVADHTFSRNELESWLNKWRLEETS"@en ; + sybio:accession "A3F3M8"^^xsd:string , "A2TEF8"^^xsd:string , "BSU22700"^^xsd:string , "A3F3H1"^^xsd:string , "P31102"^^xsd:string , "939001"^^xsd:string , "16079327"^^xsd:string ; sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28641 ; + sybio:encodedBy bo:32882 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "2.1.3 : TCA cycle"^^xsd:string ; - sybio:interactsWith bo:26344 ; + sybio:hasFunction , , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "31380.795"^^xsd:string ; - sybio:pI "5.664482"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "40815.395"^^xsd:string ; + sybio:pI "6.833748"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26575 , bo:26574 , bo:26599 , bo:26419 , bo:26573 , bo:26418 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26376"@en . + sybio:relatedTo bo:26528 , bo:26619 , bo:26476 , bo:26465 , bo:26512 ; + sybio:taxId "224308"@en ; + tawny:name "26464"@en . bo:11154 a sybio:Protein , bo:1594 , owl:NamedIndividual ; rdfs:comment "BSU38320;holin regulator of murein hydrolases"@en , "Holin-like protein cidA"@en ; @@ -362408,26 +362428,6 @@ bo:11154 a sybio:Protein , bo:1594 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11154"@en . -bo:26464 a bo:1361 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "3-dehydroquinate synthase;BSU22700;"@en , "3-dehydroquinate synthase;derived protein"@en ; - rdfs:label "AroB"@en , "aroB"@en , "BSU22700"@en ; - sybio:AA "MKTLHVQTASSSYPVFIGQGIRKKACELLTSLNRPLTRIMFVTDEEVDRLYGDEMLHLLQEKWPVKKVTVPSGEQAKSMDMYTKLQSEAIRFHMDRSSCIIAFGGGVVGDLAGFVAATFMRGIDFIQMPTTLLAHDSAVGGKVAVNHPLGKNLIGAFYQPKAVLYDTDFLRSLPEKELRSGMAEVIKHAFIYDRAFLEELLNIHSLRDITNDQLNDMIFKGISIKASVVQQDEKEEGIRAYLNFGHTLGHAVEAEYGYGQITHGDAVALGMQFALYISEKTVGCEMDRKRLVSWLKSLGYPSQIRKETETSVLLNRMMNDKKTRGGKIQFIVLNELGKVADHTFSRNELESWLNKWRLEETS"@en ; - sybio:accession "A3F3M8"^^xsd:string , "A2TEF8"^^xsd:string , "BSU22700"^^xsd:string , "A3F3H1"^^xsd:string , "P31102"^^xsd:string , "939001"^^xsd:string , "16079327"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32882 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "40815.395"^^xsd:string ; - sybio:pI "6.833748"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26528 , bo:26619 , bo:26476 , bo:26465 , bo:26512 ; - sybio:taxId "224308"@en ; - tawny:name "26464"@en . - bo:30042 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21110"@en ; rdfs:label "BSU21110"@en , "yonF"@en ; @@ -362755,15 +362755,15 @@ bo:32814 a owl:NamedIndividual , sybio:CDS ; rdfs:label "hydrolase activity, hydrolyzing O-glycosyl compounds"@en , "GO:0004553"@en , "O-glucosyl hydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.-"^^xsd:string ; + owl:hasValue "GO:0016800"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004553"^^xsd:string ; + owl:hasValue "3.2.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016800"^^xsd:string ; + owl:hasValue "GO:0004553"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -362801,19 +362801,19 @@ bo:32902 a sybio:CDS , owl:NamedIndividual ; rdfs:label "phosphoribosyl-aminoimidazole synthetase"@en , "AIR synthase"@en , "5'-aminoimidazole ribonucleotide synthetase"@en , "phosphoribosylaminoimidazole synthetase"@en , "AIRS"@en , "cyclo-ligase"@en , "AIR synthetase"@en , "GO:0004641"@en , "phosphoribosylformylglycinamidine cyclo-ligase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AIRS-RXN"^^xsd:string ; + owl:hasValue "GO:0004641"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13434 \"phosphoribosylformylglycinamidine cyclo-ligase activity\""^^xsd:string ; + owl:hasValue "6.3.3.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.3.1"^^xsd:string ; + owl:hasValue "13434 \"phosphoribosylformylglycinamidine cyclo-ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004641"^^xsd:string ; + owl:hasValue "AIRS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -363277,11 +363277,11 @@ bo:21971 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.11"^^xsd:string ; + owl:hasValue "12293 \"nicotinate phosphoribosyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12293 \"nicotinate phosphoribosyltransferase activity\""^^xsd:string ; + owl:hasValue "2.4.2.11"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -363309,11 +363309,11 @@ bo:2978 a sybio:Promoter , sybio:SigAPromoter , owl:Named rdfs:label "3'-phosphoadenylylsulfate reductase"@en , "PAPS sulfotransferase"@en , "phosphoadenylyl-sulfate reductase (thioredoxin)"@en , "PAPS reductase"@en , "phosphoadenosine-phosphosulfate reductase"@en , "PAdoPS reductase"@en , "adenosine 3' 5'-bisphosphate sulfite:thioredoxin-disulfide oxidoreductase"@en , "thioredoxin:3'-phospho-adenylylsulfate reductase"@en , "GO:0004604"@en , "adenosine 3' 5'-bisphosphate sulfite:oxidized-thioredoxin oxidoreductase"@en , "thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase"@en , "phosphoadenylyl-sulphate reductase"@en , "PAPS reductase thioredoxin-dependent"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004604"^^xsd:string ; + owl:hasValue "1.8.4.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.4.8"^^xsd:string ; + owl:hasValue "GO:0004604"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -363675,15 +363675,15 @@ bo:29090 a sybio:CDS , owl:NamedIndividual ; rdfs:label "MCP methyltransferase II"@en , "S-adenosyl-L-methionine:protein-L-glutamate O-methyltransferase"@en , "protein carboxylmethyltransferase II"@en , "GO:0008983"@en , "methyl-accepting chemotaxis protein O-methyltransferase"@en , "protein methylase II"@en , "protein carboxyl-O-methyltransferase"@en , "S-adenosylmethionine-glutamyl methyltransferase"@en , "protein O-methyltransferase"@en , "protein-glutamate O-methyltransferase"@en , "protein carboxymethylase"@en , "protein carboxyl-methylase"@en , "activity"@en , "protein carboxymethyltransferase"@en , "methyl-accepting chemotaxis protein methyltransferase II"@en , "S-adenosylmethionine:protein-carboxyl O-methyltransferase"@en , "MCP methyltransferase I"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0072"^^xsd:string ; + owl:hasValue "GO:0008983"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.80"^^xsd:string ; + owl:hasValue "AA0072"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008983"^^xsd:string ; + owl:hasValue "2.1.1.80"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -363776,62 +363776,49 @@ bo:15811 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433"@en ; tawny:name "15811"@en . -bo:16465 a owl:Class , owl:NamedIndividual , sybio:KOEN ; - rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; - rdfs:label "CLOL"@en ; - rdfs:subClassOf sybio:KOEN ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Q8GHC3"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; - tawny:name "16465"@en . - a sybio:BiologicalProcess , owl:Class , owl:NamedIndividual ; rdfs:comment "The cellular synthesis of either RNA on a template of DNA or DNA on a template of RNA."@en ; rdfs:label "cellular transcription"@en , "GO:0006350"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585958 \"Transcription\""^^xsd:string ; + owl:hasValue "74159 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487521 \"Transcription\""^^xsd:string ; + owl:hasValue "592524 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469764 \"Transcription\""^^xsd:string ; + owl:hasValue "547614 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448636 \"Transcription\""^^xsd:string ; + owl:hasValue "568425 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595359 \"Transcription\""^^xsd:string ; + owl:hasValue "557808 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557808 \"Transcription\""^^xsd:string ; + owl:hasValue "GO:0006350"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526339 \"Transcription\""^^xsd:string ; + owl:hasValue "487521 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507482 \"Transcription\""^^xsd:string ; + owl:hasValue "585958 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581627 \"Transcription\""^^xsd:string ; + owl:hasValue "507482 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006350"^^xsd:string ; + owl:hasValue "531172 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -363839,44 +363826,57 @@ bo:16465 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531172 \"Transcription\""^^xsd:string ; + owl:hasValue "542268 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "74159 \"Transcription\""^^xsd:string ; + owl:hasValue "448636 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536547 \"Transcription\""^^xsd:string ; + owl:hasValue "552218 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568425 \"Transcription\""^^xsd:string ; + owl:hasValue "526339 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542268 \"Transcription\""^^xsd:string ; + owl:hasValue "Transcription_(genetics)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592524 \"Transcription\""^^xsd:string ; + owl:hasValue "469764 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547614 \"Transcription\""^^xsd:string ; + owl:hasValue "595359 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Transcription_(genetics)"^^xsd:string ; + owl:hasValue "581627 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552218 \"Transcription\""^^xsd:string ; + owl:hasValue "536547 \"Transcription\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16465 a owl:Class , owl:NamedIndividual , sybio:KOEN ; + rdfs:comment "clorobiocin biosynthesis protein CloL"@en ; + rdfs:label "CLOL"@en ; + rdfs:subClassOf sybio:KOEN ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "Q8GHC3"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12715"@en ; + tawny:name "16465"@en . + bo:28048 a sybio:RBS , owl:NamedIndividual ; rdfs:label "ythP_RBS"@en ; sybio:NA "TTGGAGGTGAGTGAGTT"^^xsd:string ; @@ -363887,6 +363887,16 @@ bo:28048 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:30870 ; tawny:name "28048"@en . +bo:28136 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "spo0M_RBS"@en ; + sybio:NA "GAAAAAGGGGAAGATCTAAC"^^xsd:string ; + sybio:begin "954169"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "954150"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:31401 ; + tawny:name "28136"@en . + bo:16553 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "phosphonoacetaldehyde reductase"@en ; rdfs:label "FOMC"@en ; @@ -363897,15 +363907,15 @@ bo:16553 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12901"@en ; tawny:name "16553"@en . -bo:28136 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "spo0M_RBS"@en ; - sybio:NA "GAAAAAGGGGAAGATCTAAC"^^xsd:string ; - sybio:begin "954169"@en ; +bo:28224 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yrhH_RBS"@en ; + sybio:NA "ACCAAAAGCAGGTGTTTAAA"^^xsd:string ; + sybio:begin "2778439"@en ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "954150"@en ; + sybio:end "2778420"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31401 ; - tawny:name "28136"@en . + sybio:upstreamOf bo:31875 ; + tawny:name "28224"@en . bo:16641 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "glutathione synthase [EC:6.3.2.3]"@en ; @@ -363928,16 +363938,6 @@ bo:22499 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11610 ; tawny:name "22499"@en . -bo:28224 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yrhH_RBS"@en ; - sybio:NA "ACCAAAAGCAGGTGTTTAAA"^^xsd:string ; - sybio:begin "2778439"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "2778420"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:31875 ; - tawny:name "28224"@en . - bo:22587 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.6.5.7"@en ; @@ -364173,27 +364173,27 @@ bo:17382 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00048"@en ; tawny:name "17382"@en . -bo:493 a owl:Class ; - rdfs:label "COG3689"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:1225 a owl:Class ; + rdfs:label "COG2115"@en ; + rdfs:subClassOf bo:365 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3689"^^xsd:string ; + owl:hasValue "COG2115"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "493"@en . + tawny:name "1225"@en . -bo:1225 a owl:Class ; - rdfs:label "COG2115"@en ; - rdfs:subClassOf bo:365 , sybio:COG ; +bo:493 a owl:Class ; + rdfs:label "COG3689"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2115"^^xsd:string ; + owl:hasValue "COG3689"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1225"@en . + tawny:name "493"@en . bo:17470 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E1.13.11.-"@en ; @@ -364203,17 +364203,6 @@ bo:17470 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00465"@en ; tawny:name "17470"@en . -bo:581 a owl:Class ; - rdfs:label "COG3428"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3428"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "581"@en . - bo:29053 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU40710"@en ; rdfs:label "yybA"@en , "BSU40710"@en ; @@ -364250,6 +364239,17 @@ bo:1313 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1313"@en . +bo:581 a owl:Class ; + rdfs:label "COG3428"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG3428"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "581"@en . + bo:29141 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU30140"@en ; sybio:accession "BSU30140"^^xsd:string ; @@ -364346,27 +364346,17 @@ bo:4775 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4774 ; tawny:name "4775"@en . -bo:16428 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "novobiocin biosynthesis protein NovJ"@en ; - rdfs:label "NOVJ"@en ; - sybio:accession "Q9L9F8"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16427 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12703"@en ; - tawny:name "16428"@en . - a owl:Class ; rdfs:comment "Any process involved in a type of transpositional recombination which occurs via a DNA intermediate."@en ; rdfs:label "Tc3 transposition"@en , "cut-and-paste transposition"@en , "transposition, DNA-mediated"@en , "Tc1 mariner transposition"@en , "P-element excision"@en , "Class II transposition"@en , "DNA transposition"@en , "GO:0006313"@en , "P-element transposition"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006318"^^xsd:string ; + owl:hasValue "GO:0006313"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006313"^^xsd:string ; + owl:hasValue "GO:0006318"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -364376,6 +364366,16 @@ bo:16428 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16428 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "novobiocin biosynthesis protein NovJ"@en ; + rdfs:label "NOVJ"@en ; + sybio:accession "Q9L9F8"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16427 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12703"@en ; + tawny:name "16428"@en . + bo:4863 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yhjCB_terminator"@en ; sybio:NA "AAAAAGCAATCTGGACACCAGATTGCTTTTTCTTATTTACC"^^xsd:string ; @@ -364388,6 +364388,18 @@ bo:4863 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4862 ; tawny:name "4863"@en . + + a owl:Class ; + rdfs:comment "The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."@en ; + rdfs:label "RNA catabolism"@en , "GO:0006401"@en , "RNA degradation"@en , "RNA catabolic process"@en , "RNA breakdown"@en ; + rdfs:subClassOf , sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006401"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + a owl:Class ; rdfs:comment "The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis."@en ; @@ -364408,18 +364420,6 @@ bo:16516 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05888"@en ; tawny:name "16516"@en . - - a owl:Class ; - rdfs:comment "The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."@en ; - rdfs:label "RNA catabolism"@en , "GO:0006401"@en , "RNA degradation"@en , "RNA catabolic process"@en , "RNA breakdown"@en ; - rdfs:subClassOf , sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006401"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:16604 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47 4.4.1.9]"@en ; rdfs:label "ATCYSC1"@en ; @@ -364674,15 +364674,6 @@ bo:456 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "456"@en . -bo:17433 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "lactate 2-monooxygenase [EC:1.13.12.4]"@en ; - rdfs:label "E1.13.12.4"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:17432 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00467"@en ; - tawny:name "17433"@en . - bo:5780 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yunB_terminator"@en ; sybio:NA "AATAAGCCGCCTGTTGAAGAGGCGGCTTTTTGTTACTTCTT"^^xsd:string ; @@ -364695,6 +364686,15 @@ bo:5780 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:5779 ; tawny:name "5780"@en . +bo:17433 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "lactate 2-monooxygenase [EC:1.13.12.4]"@en ; + rdfs:label "E1.13.12.4"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:17432 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00467"@en ; + tawny:name "17433"@en . + bo:29016 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU23360"@en ; rdfs:label "BSU23360"@en , "ppiB"@en , "cypBS"@en ; @@ -364732,11 +364732,11 @@ bo:29016 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008909"^^xsd:string ; + owl:hasValue "ISOCHORSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ISOCHORSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0008909"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -366166,6 +366166,17 @@ bo:32480 a owl:NamedIndividual , sybio:CDS ; "1.0"@en ; tawny:name "32480"@en . +bo:13680 a owl:NamedIndividual , sybio:Compound ; + rdfs:comment "C8H10NO6P"@en ; + rdfs:label "C8H10NO6P"@en , "Pyridoxal 5'-phosphate"@en , "PLP"@en , "Pyridoxal 5-phosphate"@en , "Pyridoxal phosphate"@en ; + sybio:accession "54-47-7"^^xsd:string , "18405"^^xsd:string , "3320"^^xsd:string , "C00018"^^xsd:string , "B00005"^^xsd:string ; + sybio:consumedBy bo:24592 , bo:24585 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24585 , bo:24591 , bo:24569 , bo:24555 , bo:24589 , bo:24582 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00018"@en ; + tawny:name "13680"@en . + bo:28990 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU31750"@en , "nicotinate phosphoribosyltransferase (EC:2.4.2.11)"@en ; rdfs:label "BSU31750"@en , "pncB"@en , "yueK"@en ; @@ -366193,17 +366204,6 @@ bo:28990 a owl:NamedIndividual , sybio:CDS ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu31750"@en ; tawny:name "28990"@en . -bo:13680 a owl:NamedIndividual , sybio:Compound ; - rdfs:comment "C8H10NO6P"@en ; - rdfs:label "C8H10NO6P"@en , "Pyridoxal 5'-phosphate"@en , "PLP"@en , "Pyridoxal 5-phosphate"@en , "Pyridoxal phosphate"@en ; - sybio:accession "54-47-7"^^xsd:string , "18405"^^xsd:string , "3320"^^xsd:string , "C00018"^^xsd:string , "B00005"^^xsd:string ; - sybio:consumedBy bo:24592 , bo:24585 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24585 , bo:24591 , bo:24569 , bo:24555 , bo:24589 , bo:24582 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00018"@en ; - tawny:name "13680"@en . - bo:9997 a bo:872 , bo:420 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized membrane protein ykoX"@en , "putative integral inner membrane protein;BSU13430"@en ; rdfs:label "ykoX"@en , "BSU13430"@en , "YkoX"@en ; @@ -366288,16 +366288,6 @@ bo:31438 a owl:NamedIndividual , sybio:CDS ; "0.0"@en ; tawny:name "31438"@en . -bo:27948 a owl:NamedIndividual , sybio:Shim ; - rdfs:label "feuA_RBS_upstream"@en ; - sybio:NA "TAGTTATCAA"^^xsd:string ; - sybio:begin "183353"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "183344"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:27947 ; - tawny:name "27948"@en . - bo:12638 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C10H14N2O6"@en ; rdfs:label "C10H14N2O6"@en , "(1-Ribosylimidazole)-4-acetate"@en ; @@ -366308,6 +366298,16 @@ bo:12638 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05131"@en ; tawny:name "12638"@en . +bo:27948 a owl:NamedIndividual , sybio:Shim ; + rdfs:label "feuA_RBS_upstream"@en ; + sybio:NA "TAGTTATCAA"^^xsd:string ; + sybio:begin "183353"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "183344"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:27947 ; + tawny:name "27948"@en . + bo:19017 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "acetylgalactosaminyl-0-glycosyl-glycoproteinbeta-1,3-N-acetylglucosaminyltransferase [EC:2.4.1.147]"@en ; rdfs:label "B3GNT6"@en ; @@ -367140,6 +367140,17 @@ bo:32318 a sybio:CDS , owl:NamedIndividual ; "2.0"@en ; tawny:name "32318"@en . +bo:13518 a sybio:Compound , owl:NamedIndividual ; + rdfs:comment "C28H46N7O19P3S"@en ; + rdfs:label "Pimeloyl-CoA"@en , "C28H46N7O19P3S"@en , "6-Carboxyhexanoyl-CoA"@en ; + sybio:accession "15504"^^xsd:string , "B04761"^^xsd:string , "C01063"^^xsd:string , "4302"^^xsd:string ; + sybio:consumedBy bo:24254 , bo:24735 , bo:24730 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:producedBy bo:24730 , bo:24236 ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01063"@en ; + tawny:name "13518"@en . + bo:28828 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU14150"@en ; rdfs:label "BSU14150"@en , "ykuN"@en ; @@ -367169,17 +367180,6 @@ bo:28828 a owl:NamedIndividual , sybio:CDS ; "64.0"@en ; tawny:name "28828"@en . -bo:13518 a sybio:Compound , owl:NamedIndividual ; - rdfs:comment "C28H46N7O19P3S"@en ; - rdfs:label "Pimeloyl-CoA"@en , "C28H46N7O19P3S"@en , "6-Carboxyhexanoyl-CoA"@en ; - sybio:accession "15504"^^xsd:string , "B04761"^^xsd:string , "C01063"^^xsd:string , "4302"^^xsd:string ; - sybio:consumedBy bo:24254 , bo:24735 , bo:24730 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:producedBy bo:24730 , bo:24236 ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C01063"@en ; - tawny:name "13518"@en . - bo:32406 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU11640"@en ; rdfs:label "BSU11640"@en , "yjbQ"@en ; @@ -367246,18 +367246,18 @@ bo:13606 a sybio:Compound , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + an alkane-alpha,omega-diamine = CoA + an N-acetyldiamine."@en ; - rdfs:label "putrescine acetyltransferase"@en , "acetyl-coenzyme A-1 4-diaminobutane N-acetyltransferase"@en , "spermidine N1-acetyltransferase"@en , "spermidine spermine N1-acetyltransferase"@en , "diamine acetyltransferase"@en , "GO:0004145"@en , "putrescine enzyme"@en , "spermidine acetyltransferase"@en , "acetyl-CoA:alkane-alpha omega-diamine N-acetyltransferase"@en , "diamine N-acetyltransferase"@en , "spermine N-acetyltransferase"@en , "spermine"@en , "putrescine N-acetyltransferase"@en , "spermine acetyltransferase"@en , "spermidine"@en , "putrescine acetylase"@en ; + rdfs:label "putrescine acetyltransferase"@en , "acetyl-coenzyme A-1 4-diaminobutane N-acetyltransferase"@en , "spermidine N1-acetyltransferase"@en , "spermidine spermine N1-acetyltransferase"@en , "diamine acetyltransferase"@en , "GO:0004145"@en , "putrescine enzyme"@en , "spermidine acetyltransferase"@en , "acetyl-CoA:alkane-alpha omega-diamine N-acetyltransferase"@en , "diamine N-acetyltransferase"@en , "spermine N-acetyltransferase"@en , "spermine"@en , "putrescine N-acetyltransferase"@en , "spermidine"@en , "putrescine acetylase"@en , "spermine acetyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004145"^^xsd:string ; + owl:hasValue "2.3.1.57"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIAMACTRANS-RXN"^^xsd:string ; + owl:hasValue "GO:0004145"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.57"^^xsd:string ; + owl:hasValue "DIAMACTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -367406,11 +367406,11 @@ bo:17986 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MTRD"@en , "E2.1.1.86D"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4060"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4060"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -367668,6 +367668,17 @@ bo:14611 a owl:NamedIndividual , sybio:Compound ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:27024 a owl:NamedIndividual , sybio:MicroarrayExperiment ; + rdfs:comment "B.subtilis DegU regulon, degU inactivation"@en ; + rdfs:label "ex0001762"@en ; + sybio:accession "ex0001762"^^xsd:string ; + sybio:controlExperiment "strain: ATCC 6051, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "17850253"^^xsd:string ; + sybio:targetExperiment "strain: WTF28 degU::cat, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; + tawny:name "27024"@en . + bo:21299 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "C00559 + C00001 <=> C05512 + C00014"@en , "Deoxyadenosine aminohydrolase"@en , "cpd:C00559 <=> cpd:C00559"@en ; @@ -367679,16 +367690,11 @@ bo:21299 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 , bo:11574 ; tawny:name "21299"@en . -bo:27024 a owl:NamedIndividual , sybio:MicroarrayExperiment ; - rdfs:comment "B.subtilis DegU regulon, degU inactivation"@en ; - rdfs:label "ex0001762"@en ; - sybio:accession "ex0001762"^^xsd:string ; - sybio:controlExperiment "strain: ATCC 6051, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "17850253"^^xsd:string ; - sybio:targetExperiment "strain: WTF28 degU::cat, medium: 2x SG, Temperature: 37 degC,\nharvest point: T0"@en ; - tawny:name "27024"@en . +bo:27112 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigF_gerAA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27112"@en . bo:21387 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; @@ -367702,12 +367708,6 @@ bo:21387 a sybio:Reaction , owl:NamedIndividual ; sybio:sharesIntermediate bo:21583 , bo:21565 , bo:21121 , bo:11580 , bo:11574 , bo:11551 , bo:21631 , bo:21616 , bo:21632 , bo:21581 ; tawny:name "21387"@en . -bo:27112 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigF_gerAA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27112"@en . - bo:21475 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "phosphate alpha-D-ribosyltransferase"@en , "C00299 + C00009 <=> C00106 + C00620"@en , "cpd:C00299 <=> cpd:C00299"@en , "Uridine"@en ; @@ -367739,10 +367739,10 @@ bo:21563 a sybio:Reaction , owl:NamedIndividual ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group."@en ; - rdfs:label "citrate synthetase"@en , "condensing enzyme"@en , "synthase"@en , "acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing forming]"@en , "citrate condensing enzyme"@en , "oxalacetic transacetase"@en , "citrate (Si)-synthase"@en , "citrate oxaloacetate-lyase CoA-acetylating"@en , "oxaloacetate transacetase"@en , "GO:0004108"@en , "citric-condensing enzyme"@en , "citrate synthase"@en , "citric synthase"@en , "citrate oxaloacetate-lyase"@en , "citrogenase"@en ; + rdfs:label "citrate synthetase"@en , "condensing enzyme"@en , "synthase"@en , "acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing forming]"@en , "citrate condensing enzyme"@en , "oxalacetic transacetase"@en , "citrate (Si)-synthase"@en , "citrate oxaloacetate-lyase CoA-acetylating"@en , "GO:0004108"@en , "oxaloacetate transacetase"@en , "citric-condensing enzyme"@en , "citrate synthase"@en , "citric synthase"@en , "citrate oxaloacetate-lyase"@en , "citrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CITSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004108"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -367750,7 +367750,7 @@ bo:21563 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004108"^^xsd:string ; + owl:hasValue "CITSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -367991,24 +367991,6 @@ bo:29708 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "29708"@en . -bo:3399 a sybio:SigAPromoter , sybio:Promoter , owl:NamedIndividual , sybio:ConstitutiveSigAPromoter ; - rdfs:label "fnr"@en ; - sybio:NA "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGTTACAATAAACACACAACGTG"^^xsd:string ; - sybio:annotatedSequence "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGT{TACAAT}AAACAC/A/CAACGTG"@en ; - sybio:begin "3832304"@en ; - sybio:boundBy bo:2600 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3832249"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:originalAnnotatedSequence - "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGT{TACAAT}AAACAC/A/CAACGTGACTTTCTTCG"@en ; - sybio:partOf bo:27771 ; - sybio:pmid "8846791"^^xsd:string ; - sybio:tfbsEnd "+18"@en ; - sybio:tfbsStart "-48"^^xsd:string ; - sybio:upstreamOf bo:28282 , bo:32147 ; - tawny:name "3399"@en . - bo:9124 a sybio:Protein , owl:NamedIndividual , bo:829 ; rdfs:comment "BSU09510;negative regulator of the activity of sigma-M"@en , "Probable anti-sigma-M factor yhdL;"@en ; rdfs:label "yhdL"@en , "BSU09510"@en , "YhdL"@en ; @@ -368027,6 +368009,24 @@ bo:9124 a sybio:Protein , owl:NamedIndividual , bo:829 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9124"@en . +bo:3399 a sybio:SigAPromoter , sybio:Promoter , owl:NamedIndividual , sybio:ConstitutiveSigAPromoter ; + rdfs:label "fnr"@en ; + sybio:NA "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGTTACAATAAACACACAACGTG"^^xsd:string ; + sybio:annotatedSequence "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGT{TACAAT}AAACAC/A/CAACGTG"@en ; + sybio:begin "3832304"@en ; + sybio:boundBy bo:2600 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3832249"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:originalAnnotatedSequence + "TTAGTTTTTTCTCGATGGGTACAAATCAATTCACGT{TACAAT}AAACAC/A/CAACGTGACTTTCTTCG"@en ; + sybio:partOf bo:27771 ; + sybio:pmid "8846791"^^xsd:string ; + sybio:tfbsEnd "+18"@en ; + sybio:tfbsStart "-48"^^xsd:string ; + sybio:upstreamOf bo:28282 , bo:32147 ; + tawny:name "3399"@en . + bo:22480 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "Phenylacetate"@en , "CoA ligase"@en , "C00002 + C07086 + C00010 <=> C00020 + C00013 + C00582"@en , "cpd:C07086 => cpd:C07086"@en ; @@ -368194,7 +368194,7 @@ bo:21614 a sybio:Reaction , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 3'-phosphate.;"@en ; - rdfs:label "GO:0008663"@en , "2',3'-cyclic-nucleotide 2'-phosphodiesterase"@en , "2' 3'-cyclic nucleotide phosphohydrolase"@en , "2' 3'-cyclic AMP 2'-phosphohydrolase"@en , "cyclic 2' 3'-nucleotide phosphodiesterase"@en , "nucleoside-2' 3'-cyclic-phosphate 3'-nucleotidohydrolase"@en , "2' 3'-cyclic nucleotidase"@en , "cyclic 2' 3'-nucleotide 2'-phosphodiesterase"@en , "2':3'-cyclic nucleotide phosphodiesterase:3'-nucleotidase"@en , "2':3'-cyclic phosphodiesterase"@en , "cyclic phosphodiesterase:3'-nucleotidase"@en , "2' 3'-cyclic nucleoside monophosphate phosphodiesterase"@en , "ribonucleoside 2' 3'-cyclic phosphate diesterase"@en , "2' 3 '-cyclic AMP phosphodiesterase"@en ; + rdfs:label "GO:0008663"@en , "2',3'-cyclic-nucleotide 2'-phosphodiesterase"@en , "2' 3'-cyclic nucleotide phosphohydrolase"@en , "2' 3'-cyclic AMP 2'-phosphohydrolase"@en , "cyclic 2' 3'-nucleotide phosphodiesterase"@en , "nucleoside-2' 3'-cyclic-phosphate 3'-nucleotidohydrolase"@en , "2' 3'-cyclic nucleotidase"@en , "2':3'-cyclic nucleotide phosphodiesterase:3'-nucleotidase"@en , "cyclic 2' 3'-nucleotide 2'-phosphodiesterase"@en , "2':3'-cyclic phosphodiesterase"@en , "cyclic phosphodiesterase:3'-nucleotidase"@en , "2' 3'-cyclic nucleoside monophosphate phosphodiesterase"@en , "ribonucleoside 2' 3'-cyclic phosphate diesterase"@en , "2' 3 '-cyclic AMP phosphodiesterase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0008663"^^xsd:string ; @@ -368357,16 +368357,6 @@ bo:4492 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4491 ; tawny:name "4492"@en . -bo:16233 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "catechol 2,3-dioxygenase [EC:1.13.11.2]"@en ; - rdfs:label "E1.13.11.2"@en ; - sybio:accession "0018577"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16232 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00446"@en ; - tawny:name "16233"@en . - bo:4580 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ydiOP_terminator"@en ; sybio:NA "AGTATCGGAGCTGGATAAAACCAGCTCCGTTTTTTATCTTTAAT"^^xsd:string ; @@ -368379,6 +368369,16 @@ bo:4580 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4579 ; tawny:name "4580"@en . +bo:16233 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "catechol 2,3-dioxygenase [EC:1.13.11.2]"@en ; + rdfs:label "E1.13.11.2"@en ; + sybio:accession "0018577"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16232 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00446"@en ; + tawny:name "16233"@en . + bo:16321 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "arylformamidase [EC:3.5.1.9]"@en ; rdfs:label "AFMID"@en ; @@ -368582,6 +368582,16 @@ bo:10595 a owl:NamedIndividual , sybio:Protein , bo:367 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10595"@en . +bo:25993 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "NADP+ (see R02353) - orphan"@en ; + rdfs:label " => "@en , "Estradiol-17beta"@en , "NAD+ 17-oxidoreductase"@en , "C00951 + C00003 <=> C00468 + C00004 + C00080"@en ; + sybio:accession "RN:R02352"^^xsd:string ; + sybio:catalyzingClass bo:25972 , bo:25994 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25993"@en . + bo:10683 a bo:398 , sybio:Protein , owl:NamedIndividual , bo:409 ; rdfs:comment "BSU05640;putative transcriptional regulator (MarR family)"@en , "Uncharacterized HTH-type transcriptional regulator ydgG"@en ; rdfs:label "ydgG"@en , "BSU05640"@en , "YdgG"@en ; @@ -368602,16 +368612,6 @@ bo:10683 a bo:398 , sybio:Protein , owl:NamedIndividual , tawny:name "10683"@en ; owl:sameAs bo:6618 . -bo:25993 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "NADP+ (see R02353) - orphan"@en ; - rdfs:label " => "@en , "Estradiol-17beta"@en , "NAD+ 17-oxidoreductase"@en , "C00951 + C00003 <=> C00468 + C00004 + C00080"@en ; - sybio:accession "RN:R02352"^^xsd:string ; - sybio:catalyzingClass bo:25972 , bo:25994 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25993"@en . - bo:17062 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "phosphatidylinositol 3-kinase [EC:2.7.1.137]"@en ; rdfs:label "PIK3C3"@en , "E2.7.1.137"@en , "VPS34"@en ; @@ -368737,11 +368737,11 @@ bo:18917 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008802"^^xsd:string ; + owl:hasValue "1.2.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.8"^^xsd:string ; + owl:hasValue "GO:0008802"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -368837,11 +368837,11 @@ bo:4631 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0015930"@en , "glutamate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015930"^^xsd:string ; + owl:hasValue "1.4.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.4.-.-"^^xsd:string ; + owl:hasValue "GO:0015930"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -368911,7 +368911,7 @@ bo:16019 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACONITATEDEHYDR-RXN"^^xsd:string ; + owl:hasValue "GO:0003994"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -368919,7 +368919,7 @@ bo:16019 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003994"^^xsd:string ; + owl:hasValue "ACONITATEDEHYDR-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -368965,6 +368965,17 @@ bo:5196 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ypnP"@en ; tawny:name "5196"@en . +bo:25868 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "multi-step reactionpossibly intermediates (quinone methide and 4-hydroxybenzyl alcohol) - reversible"@en ; + rdfs:label "C01468 + 4 C00139 + C00001 <=> C00633 + 4 C00138"@en , "cpd:C00633 <=> cpd:C00633"@en , "acceptor oxidoreductase (methyl-hydroxylating)"@en , "4-cresol"@en ; + sybio:accession "RN:R02675"^^xsd:string ; + sybio:catalyzedBy bo:18658 ; + sybio:catalyzingClass bo:25869 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25868"@en . + bo:10558 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein ywoB;"@en , "putative integral inner membrane protein;BSU36500"@en ; rdfs:label "ywoB"@en , "BSU36500"@en , "YwoB"@en ; @@ -368981,17 +368992,6 @@ bo:10558 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10558"@en . -bo:25868 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "multi-step reactionpossibly intermediates (quinone methide and 4-hydroxybenzyl alcohol) - reversible"@en ; - rdfs:label "C01468 + 4 C00139 + C00001 <=> C00633 + 4 C00138"@en , "cpd:C00633 <=> cpd:C00633"@en , "acceptor oxidoreductase (methyl-hydroxylating)"@en , "4-cresol"@en ; - sybio:accession "RN:R02675"^^xsd:string ; - sybio:catalyzedBy bo:18658 ; - sybio:catalyzingClass bo:25869 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25868"@en . - bo:5284 a sybio:Operon , owl:NamedIndividual ; rdfs:label "sipS"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -369083,11 +369083,11 @@ bo:17113 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.7.1.82"@en , "EKI1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0510"^^xsd:string ; + owl:hasValue "0004305"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004305"^^xsd:string ; + owl:hasValue "COG0510"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -369375,6 +369375,19 @@ bo:30187 a owl:NamedIndividual , sybio:CDS ; "47.0"@en ; tawny:name "30187"@en . +bo:26697 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta;derived protein"@en ; + rdfs:label "yosP"@en , "BSU20040"@en ; + sybio:accession "50812253"^^xsd:string , "O30601"^^xsd:string , "939476"^^xsd:string , "BSU20040"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28643 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:interactsWith bo:26382 , bo:26381 ; + sybio:relatedTo bo:26698 , bo:6989 , bo:26467 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26697"@en . + bo:11387 a sybio:Protein , owl:NamedIndividual , bo:513 , bo:512 ; rdfs:comment "BSU04170;putative acyl-CoA ligase"@en , "Putative acyl--CoA ligase ydaB"@en ; rdfs:label "ydaB"@en , "BSU04170"@en , "YdaB"@en ; @@ -369392,19 +369405,6 @@ bo:11387 a sybio:Protein , owl:NamedIndividual , bo:513 , bo sybio:taxId "[224308, 1423]"@en ; tawny:name "11387"@en . -bo:26697 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta;derived protein"@en ; - rdfs:label "yosP"@en , "BSU20040"@en ; - sybio:accession "50812253"^^xsd:string , "O30601"^^xsd:string , "939476"^^xsd:string , "BSU20040"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28643 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:interactsWith bo:26382 , bo:26381 ; - sybio:relatedTo bo:26698 , bo:6989 , bo:26467 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26697"@en . - bo:30275 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26570;"@en ; rdfs:label "BSU26570"@en , "yrkB"@en ; @@ -369430,25 +369430,6 @@ bo:30275 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "30275"@en . -bo:11475 a sybio:Protein , owl:NamedIndividual , bo:485 ; - rdfs:comment "HTH-type transcriptional regulator ytlI"@en , "transcriptional regulator (LysR family);BSU29400;;"@en ; - rdfs:label "BSU29400"@en , "ytlI"@en , "YtlI"@en ; - sybio:AA "LELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFTSTAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG"@en ; - sybio:accession "BSU29400"^^xsd:string , "O35038"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; - sybio:encodedBy bo:32329 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "35213.235"^^xsd:string ; - sybio:pI "6.237953"^^xsd:string ; - sybio:productType "r : regulator"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11475"@en ; - owl:sameAs bo:6837 . - bo:26785 a sybio:Protein , owl:NamedIndividual , bo:1490 ; rdfs:comment "UDP-glucose dehydrogenase;BSU36230"@en , "UDP-glucose 6-dehydrogenase ywqF;derived protein"@en ; rdfs:label "BSU36230"@en , "ywqF"@en , "YwqF"@en ; @@ -369469,6 +369450,25 @@ bo:26785 a sybio:Protein , owl:NamedIndividual , bo:1490 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26785"@en . +bo:11475 a sybio:Protein , owl:NamedIndividual , bo:485 ; + rdfs:comment "HTH-type transcriptional regulator ytlI"@en , "transcriptional regulator (LysR family);BSU29400;;"@en ; + rdfs:label "BSU29400"@en , "ytlI"@en , "YtlI"@en ; + sybio:AA "LELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERGKSLQLTKAGKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENYYHPFFYDTLNVIVSDQHPLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRENIGISIFTSTAHSKPFNGTKVIPILNLDITPPIGLLTNQKEVHFDRATKDLIARITKRFQQRSKELEGTSDKTITG"@en ; + sybio:accession "BSU29400"^^xsd:string , "O35038"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:DBTBS:GOAEBI:String"@en ; + sybio:encodedBy bo:32329 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "3.5.2 : Transcription regulation"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "35213.235"^^xsd:string ; + sybio:pI "6.237953"^^xsd:string ; + sybio:productType "r : regulator"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11475"@en ; + owl:sameAs bo:6837 . + bo:30363 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU29920;"@en ; rdfs:label "ytmP"@en , "BSU29920"@en ; @@ -369494,22 +369494,6 @@ bo:30363 a owl:NamedIndividual , sybio:CDS ; "22.0"@en ; tawny:name "30363"@en . -bo:11563 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00062.png"@en ; - rdfs:label "Fatty acid elongation in mitochondria"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00062"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11565 , bo:11549 ; - sybio:derivesFrom bo:11564 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00062"@en ; - tawny:name "11563"@en . - bo:26873 a owl:NamedIndividual , sybio:Protein , bo:743 , bo:401 ; rdfs:comment "two-component response regulator;BSU07590"@en , "Transcriptional regulatory protein citT;derived protein"@en ; rdfs:label "BSU07590"@en , "citT"@en , "CitT"@en , "YflQ"@en ; @@ -369534,16 +369518,21 @@ bo:26873 a owl:NamedIndividual , sybio:Protein , bo:743 , tawny:name "26873"@en ; owl:sameAs bo:6630 . -bo:11651 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00511"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00511"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11651"@en . +bo:11563 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00062.png"@en ; + rdfs:label "Fatty acid elongation in mitochondria"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00062"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11565 , bo:11549 ; + sybio:derivesFrom bo:11564 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00062"@en ; + tawny:name "11563"@en . bo:30451 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32380"@en ; @@ -369593,6 +369582,17 @@ bo:26961 a bo:456 , sybio:Protein , owl:NamedIndividual , tawny:name "26961"@en ; owl:sameAs bo:6588 . +bo:11651 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00511"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00511"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11651"@en . + bo:18030 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "coenzyme F420 hydrogenase alpha subunit [EC:1.12.98.1]"@en ; rdfs:label "FRHA"@en , "E1.12.98.1A"@en ; @@ -369760,11 +369760,11 @@ bo:31192 a owl:NamedIndividual , sybio:CDS ; rdfs:label "hydrolase activity acting on carbon-nitrogen bonds in other compounds"@en , "GO:0016810"@en , "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.-.-"^^xsd:string ; + owl:hasValue "GO:0016810"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016810"^^xsd:string ; + owl:hasValue "3.5.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -370406,11 +370406,11 @@ bo:12531 a sybio:Compound , owl:NamedIndividual ; rdfs:label "phosphoribosyl diphosphate synthetase"@en , "ribophosphate pyrophosphokinase"@en , "ribose-phosphate pyrophosphokinase"@en , "ribose-5-phosphate pyrophosphokinase"@en , "phosphoribosyl-diphosphate synthetase"@en , "pyrophosphoribosylphosphate synthetase"@en , "phosphoribosyl pyrophosphate synthetase"@en , "ribose phosphate diphosphokinase"@en , "phosphoribosylpyrophosphate synthetase"@en , "ATP:D-ribose-5-phosphate diphosphotransferase"@en , "GO:0004749"@en , "PP-ribose P synthetase"@en , "5-phosphoribosyl-alpha-1-pyrophosphate synthetase"@en , "5-phosphoribosyl-1-pyrophosphate synthetase"@en , "ribose-phosphate diphosphokinase"@en , "5-phosphoribose pyrophosphorylase"@en , "phosphoribosylpyrophosphate synthase"@en , "PRPP synthetase"@en , "PPRibP synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PRPPSYN-RXN"^^xsd:string ; + owl:hasValue "14245 \"ribose phosphate diphosphokinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY0-662"^^xsd:string ; + owl:hasValue "GO:0004749"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -370418,11 +370418,11 @@ bo:12531 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14245 \"ribose phosphate diphosphokinase activity\""^^xsd:string ; + owl:hasValue "PWY0-662"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004749"^^xsd:string ; + owl:hasValue "PRPPSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -371398,7 +371398,7 @@ bo:29286 a sybio:CDS , owl:NamedIndividual ; rdfs:label "acid hydrolase"@en , "imidazolonepropionase"@en , "GO:0050480"@en , "imidazolone-5-propionate hydrolase"@en , "amidohydrolase"@en , "imidazolone propionic acid hydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.7"^^xsd:string ; + owl:hasValue "GO:0050480"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -371406,7 +371406,7 @@ bo:29286 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050480"^^xsd:string ; + owl:hasValue "3.5.2.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -371428,11 +371428,11 @@ bo:17791 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E1.2.99.2L"@en , "COXL"@en , "CUTL"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1529"^^xsd:string ; + owl:hasValue "0018492"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0018492"^^xsd:string ; + owl:hasValue "COG1529"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -371635,6 +371635,26 @@ bo:16837 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K07806"@en ; tawny:name "16837"@en . + + a owl:Class ; + rdfs:comment "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore.;"@en ; + rdfs:label "small molecule transport"@en , "GO:0006810"@en , "solute:solute exchange"@en , "transport"@en , "transport accessory protein"@en , "auxiliary transport protein"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0015460"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006810"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0015457"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:21192 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "5'-phosphoribosylglycinamideformyltransferase"@en , "cpd:C03838 => cpd:C03838"@en , "10-Formyltetrahydrofolate"@en , "C00234 + C03838 <=> C00101 + C04376"@en ; @@ -371657,26 +371677,6 @@ bo:16925 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122"@en ; tawny:name "16925"@en . - - a owl:Class ; - rdfs:comment "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore.;"@en ; - rdfs:label "small molecule transport"@en , "GO:0006810"@en , "solute:solute exchange"@en , "transport"@en , "transport accessory protein"@en , "auxiliary transport protein"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006810"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015460"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015457"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28508 a sybio:Shim , owl:NamedIndividual ; rdfs:label "purE_RBS_upstream"@en ; sybio:NA "CATATAATCTTGGGAATATGGCCCATAAGTTTCTACCCGGCAACCGTAAATTGCCGGACTATGCAGGAAAGTGATCGATAAAACTGACATGGATATATCGCAGAAGCGAACGACTGACGATACATGTACCATGCCCGGTTTGTATTGCTTCCTCATAAGTGCAATGCAGAGCGGGTATTTTTTATTTTCTGAAAACAAAAGC"^^xsd:string ; @@ -373020,6 +373020,17 @@ bo:10099 a owl:NamedIndividual , bo:605 , bo:1037 , bo:103 sybio:taxId "[224308, 1423]"@en ; tawny:name "10099"@en . +bo:25497 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "C16339 + C00024 <=> C00010 + C16338"@en , "cpd:C16339 <=> cpd:C16339"@en ; + sybio:accession "RN:R07899"^^xsd:string ; + sybio:catalyzedBy bo:15118 ; + sybio:catalyzingClass bo:20943 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25497"@en . + bo:10187 a owl:NamedIndividual , bo:1271 , sybio:Protein ; rdfs:comment "BSU19100;putative transcriptional regulator"@en , "Uncharacterized HTH-type transcriptional regulator yobV"@en ; rdfs:label "BSU19100"@en , "YobV"@en , "yobV"@en ; @@ -373039,16 +373050,16 @@ bo:10187 a owl:NamedIndividual , bo:1271 , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10187"@en . -bo:25497 a sybio:Reaction , owl:NamedIndividual ; +bo:25585 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; - rdfs:label "C16339 + C00024 <=> C00010 + C16338"@en , "cpd:C16339 <=> cpd:C16339"@en ; - sybio:accession "RN:R07899"^^xsd:string ; - sybio:catalyzedBy bo:15118 ; - sybio:catalyzingClass bo:20943 ; + rdfs:label "cpd:C00096 + gl:G00002 <=> cpd:C00096 + gl:G00002"@en , "G10614 + G00002 <=> G10620 + G00003"@en ; + sybio:accession "RN:R05972"^^xsd:string ; + sybio:catalyzedBy bo:18679 ; + sybio:catalyzingClass bo:25586 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25497"@en . + tawny:name "25585"@en . bo:10275 a bo:1399 , owl:NamedIndividual , bo:834 , sybio:Protein ; rdfs:comment "BSU23560;malate-H+/Na+-lactate antiporter"@en , "Malate-2H(+)/Na(+)-lactate antiporter"@en ; @@ -373069,17 +373080,6 @@ bo:10275 a bo:1399 , owl:NamedIndividual , bo:834 , sybio: sybio:taxId "[224308, 1423]"@en ; tawny:name "10275"@en . -bo:25585 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C00096 + gl:G00002 <=> cpd:C00096 + gl:G00002"@en , "G10614 + G00002 <=> G10620 + G00003"@en ; - sybio:accession "RN:R05972"^^xsd:string ; - sybio:catalyzedBy bo:18679 ; - sybio:catalyzingClass bo:25586 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25585"@en . - bo:16000 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "gamma-glutamylputrescine synthase [EC:6.3.1.11]"@en ; rdfs:label "PUUA"@en ; @@ -373097,6 +373097,18 @@ bo:16000 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09470"@en ; tawny:name "16000"@en . +bo:25673 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.135"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.135"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25673"@en . + bo:10363 a bo:630 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU27680;conserved hypothetical protein"@en , "UPF0702 transmembrane protein yrbG"@en ; rdfs:label "BSU27680"@en , "YrbG"@en , "yrbG"@en ; @@ -373114,17 +373126,16 @@ bo:10363 a bo:630 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10363"@en . -bo:25673 a owl:Class , owl:NamedIndividual , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.135"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.135"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25673"@en . +bo:25761 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "FUT3 - reversible"@en ; + rdfs:label "gl:G00042 <=> gl:G00042"@en , "G10615 + G00042 <=> G10620 + G00043"@en ; + sybio:accession "RN:R06162"^^xsd:string ; + sybio:catalyzedBy bo:18751 ; + sybio:catalyzingClass bo:25762 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25761"@en . bo:10451 a sybio:Protein , owl:NamedIndividual , bo:364 ; rdfs:comment "BSU31480;putative exporter;"@en , "Uncharacterized MFS-type transporter yuxJ"@en ; @@ -373145,17 +373156,6 @@ bo:10451 a sybio:Protein , owl:NamedIndividual , bo:364 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10451"@en . -bo:25761 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "FUT3 - reversible"@en ; - rdfs:label "gl:G00042 <=> gl:G00042"@en , "G10615 + G00042 <=> G10620 + G00043"@en ; - sybio:accession "RN:R06162"^^xsd:string ; - sybio:catalyzedBy bo:18751 ; - sybio:catalyzingClass bo:25762 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25761"@en . - bo:6768 a owl:NamedIndividual , sybio:Protein , bo:1696 ; rdfs:comment "putative sulfur oxido-reduction management enzyme;BSU32210"@en ; rdfs:label "YuzD"@en , "BSU32210"@en ; @@ -373366,6 +373366,25 @@ bo:30080 a owl:NamedIndividual , sybio:CDS ; "12.0"@en ; tawny:name "30080"@en . +bo:26590 a bo:1593 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Antiholin-like protein lrgB;derived protein"@en , "BSU28900;antiholin factor"@en ; + rdfs:label "lrgB"@en , "BSU28900"@en , "ysbB"@en , "YsbB"@en , "LrgB"@en ; + sybio:AA "MESTMSPYFGIVVSLAAFGIGTFLFKKTKGFFLFTPLFVAMVLGIAFLKIGGFSYADYNNGGEIIKFFLEPATIAFAIPLYKQRDKLKKYWWQIMASIIAGSICSVTIVYLLAKGIHLDSAVMKSMLPQAATTAIALPLSKGIGGISDITAFAVIFNAVIVYALGALFLKVFKVKNPISKGLALGTSGHALGVAVGIEMGEVEAAMASIAVVVVGVVTVLVIPVFVQLIGG"@en ; + sybio:accession "BSU28900"^^xsd:string , "P94516"^^xsd:string , "937418"^^xsd:string , "16079942"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28854 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "24396.29"^^xsd:string ; + sybio:pI "9.472099"^^xsd:string ; + sybio:partOf bo:20360 ; + sybio:productType "f : factor"^^xsd:string ; + sybio:relatedTo bo:26591 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26590"@en . + bo:11280 a bo:328 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "30S ribosomal protein S3"@en , "BSU01220;ribosomal protein S3 (BS3)"@en ; rdfs:label "rpsC"@en , "RpsC"@en , "BSU01220"@en ; @@ -373387,25 +373406,6 @@ bo:11280 a bo:328 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11280"@en . -bo:26590 a bo:1593 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Antiholin-like protein lrgB;derived protein"@en , "BSU28900;antiholin factor"@en ; - rdfs:label "lrgB"@en , "BSU28900"@en , "ysbB"@en , "YsbB"@en , "LrgB"@en ; - sybio:AA "MESTMSPYFGIVVSLAAFGIGTFLFKKTKGFFLFTPLFVAMVLGIAFLKIGGFSYADYNNGGEIIKFFLEPATIAFAIPLYKQRDKLKKYWWQIMASIIAGSICSVTIVYLLAKGIHLDSAVMKSMLPQAATTAIALPLSKGIGGISDITAFAVIFNAVIVYALGALFLKVFKVKNPISKGLALGTSGHALGVAVGIEMGEVEAAMASIAVVVVGVVTVLVIPVFVQLIGG"@en ; - sybio:accession "BSU28900"^^xsd:string , "P94516"^^xsd:string , "937418"^^xsd:string , "16079942"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28854 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "24396.29"^^xsd:string ; - sybio:pI "9.472099"^^xsd:string ; - sybio:partOf bo:20360 ; - sybio:productType "f : factor"^^xsd:string ; - sybio:relatedTo bo:26591 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26590"@en . - bo:31759 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU36740"@en ; rdfs:label "ywmC"@en , "BSU36740"@en ; @@ -373520,11 +373520,11 @@ bo:31935 a owl:NamedIndividual , sybio:CDS ; rdfs:label "molecular function unknown"@en , "molecular function"@en , "molecular_function"@en , "GO:0003674"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003674"^^xsd:string ; + owl:hasValue "GO:0005554"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005554"^^xsd:string ; + owl:hasValue "GO:0003674"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -373882,11 +373882,11 @@ bo:32852 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2OXOGLUTDECARB-RXN"^^xsd:string ; + owl:hasValue "1.2.4.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.4.2"^^xsd:string ; + owl:hasValue "2OXOGLUTDECARB-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -373938,6 +373938,26 @@ bo:32940 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu31400"@en ; tawny:name "32940"@en . +bo:26377 a bo:857 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "derived protein;Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG"@en , "acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase;BSU17150"@en ; + rdfs:label "PksG"@en , "pksG"@en , "BSU17150"@en ; + sybio:AA "MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAKPIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAGFQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGENPEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRVPGANYQDTFQYLAYHTPFGGMVKGAHRTMMRKVAKVKTSGIETDFLTRVKPGLNYCQRVGNIMGAALFLALASTIDQGRFDTPKRIGCFSYGSGCCSEFYSGITTPQGQERQRTFGIEKHLDRRYQLSMEEYELLFKGSGMVRFGTRNVKLDFEMIPGIMQSTQEKPRLFLEEISEFHRKYRWIS"@en ; + sybio:accession "50812233"^^xsd:string , "BSU17150"^^xsd:string , "P40830"^^xsd:string , "940121"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32844 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "46778.545"^^xsd:string ; + sybio:pI "5.302711"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26732 , bo:9396 , bo:26401 , bo:26414 , bo:26505 , bo:9397 , bo:9398 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26377"@en . + bo:11067 a bo:724 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Protein translocase subunit secA"@en , "BSU35300;translocase binding subunit (ATPase);"@en ; rdfs:label "SecA"@en , "Div-341"@en , "Ts-341"@en , "Div"@en , "BSU35300"@en , "secA"@en ; @@ -373958,25 +373978,24 @@ bo:11067 a bo:724 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11067"@en . -bo:26377 a bo:857 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "derived protein;Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG"@en , "acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase;BSU17150"@en ; - rdfs:label "PksG"@en , "pksG"@en , "BSU17150"@en ; - sybio:AA "MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAKPIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAGFQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGENPEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRVPGANYQDTFQYLAYHTPFGGMVKGAHRTMMRKVAKVKTSGIETDFLTRVKPGLNYCQRVGNIMGAALFLALASTIDQGRFDTPKRIGCFSYGSGCCSEFYSGITTPQGQERQRTFGIEKHLDRRYQLSMEEYELLFKGSGMVRFGTRNVKLDFEMIPGIMQSTQEKPRLFLEEISEFHRKYRWIS"@en ; - sybio:accession "50812233"^^xsd:string , "BSU17150"^^xsd:string , "P40830"^^xsd:string , "940121"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; +bo:26465 a owl:NamedIndividual , sybio:Protein , bo:1362 ; + rdfs:comment "derived protein;Chorismate synthase"@en , "chorismate synthase;BSU22710"@en ; + rdfs:label "BSU22710"@en , "AroF"@en , "aroF"@en ; + sybio:AA "MRYLTAGESHGPQLTTIIEGVPAGLYITEEDINFELARRQKGHGRGRRMQIEKDQAKIMSGVRHARTLGSPIALVVENNDWKHWTKIMGAAPITEDEEKEMKRQISRPRPGHADLNGAIKYNHRDMRNVLERSSARETTVRVAAGAVAKKILSELGIKVAGHVLQIGAVKAEKTEYTSIEDLQRVTEESPVRCYDEEAGKKMMAAIDEAKANGDSIGGIVEVIVEGMPVGVGSYVHYDRKLDSKLAAAVLSINAFKGVEFGIGFEAAGRNGSEVHDEIIWDEEKGYTRATNRLGGLEGGMTTGMPIVVRGVMKPIPTLYKPLKSVDIETKEPFSASIERSDSCAVPAASVVAEAAVAWEIANAVVEQFGLDQIDRIRENVENMRKLSREF"@en ; + sybio:accession "BSU22710"^^xsd:string , "A3F3M9"^^xsd:string , "255767489"^^xsd:string , "939000"^^xsd:string , "A3F3H2"^^xsd:string , "P31104"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32844 ; + sybio:encodedBy bo:32883 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "4.3 : Antibiotic production"^^xsd:string ; + sybio:hasFunction , ; + sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "46778.545"^^xsd:string ; - sybio:pI "5.302711"^^xsd:string ; + sybio:molecularWeight "42804.045"^^xsd:string ; + sybio:pI "6.083504"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26732 , bo:9396 , bo:26401 , bo:26414 , bo:26505 , bo:9397 , bo:9398 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26377"@en . + sybio:relatedTo bo:26712 , bo:26555 , bo:26646 , bo:26528 , bo:26619 , bo:26554 ; + sybio:taxId "224308"@en ; + tawny:name "26465"@en . bo:11155 a sybio:Protein , bo:1061 , owl:NamedIndividual ; rdfs:comment "Putative ribosomal RNA large subunit methyltransferase ywbD"@en , "putative AdoMet-dependent methyltransferase;BSU38360"@en ; @@ -373996,25 +374015,6 @@ bo:11155 a sybio:Protein , bo:1061 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11155"@en . -bo:26465 a owl:NamedIndividual , sybio:Protein , bo:1362 ; - rdfs:comment "derived protein;Chorismate synthase"@en , "chorismate synthase;BSU22710"@en ; - rdfs:label "BSU22710"@en , "AroF"@en , "aroF"@en ; - sybio:AA "MRYLTAGESHGPQLTTIIEGVPAGLYITEEDINFELARRQKGHGRGRRMQIEKDQAKIMSGVRHARTLGSPIALVVENNDWKHWTKIMGAAPITEDEEKEMKRQISRPRPGHADLNGAIKYNHRDMRNVLERSSARETTVRVAAGAVAKKILSELGIKVAGHVLQIGAVKAEKTEYTSIEDLQRVTEESPVRCYDEEAGKKMMAAIDEAKANGDSIGGIVEVIVEGMPVGVGSYVHYDRKLDSKLAAAVLSINAFKGVEFGIGFEAAGRNGSEVHDEIIWDEEKGYTRATNRLGGLEGGMTTGMPIVVRGVMKPIPTLYKPLKSVDIETKEPFSASIERSDSCAVPAASVVAEAAVAWEIANAVVEQFGLDQIDRIRENVENMRKLSREF"@en ; - sybio:accession "BSU22710"^^xsd:string , "A3F3M9"^^xsd:string , "255767489"^^xsd:string , "939000"^^xsd:string , "A3F3H2"^^xsd:string , "P31104"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32883 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "2.2 : Metabolism of amino acids and related molecules"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "42804.045"^^xsd:string ; - sybio:pI "6.083504"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26712 , bo:26555 , bo:26646 , bo:26528 , bo:26619 , bo:26554 ; - sybio:taxId "224308"@en ; - tawny:name "26465"@en . - bo:30043 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU21120"@en ; rdfs:label "BSU21120"@en , "yonE"@en ; @@ -374831,14 +374831,14 @@ bo:21972 a owl:NamedIndividual , sybio:Reaction ; a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+."@en ; - rdfs:label "GO:0004517"@en , "nitric oxide synthase"@en , "nitric-oxide synthetase"@en , "L-arginine NADPH:oxygen oxidoreductase"@en , "endothelium-derived relaxing factor synthase"@en , "NO synthase"@en , "nitric oxide synthetase"@en , "endothelium-derived relaxation factor-forming enzyme"@en , "NADPH-diaphorase"@en , "nitric-oxide synthase"@en ; + rdfs:label "GO:0004517"@en , "nitric oxide synthase"@en , "nitric-oxide synthetase"@en , "L-arginine NADPH:oxygen oxidoreductase"@en , "endothelium-derived relaxing factor synthase"@en , "nitric oxide synthetase"@en , "NO synthase"@en , "endothelium-derived relaxation factor-forming enzyme"@en , "NADPH-diaphorase"@en , "nitric-oxide synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "1.14.13.39"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NITRIC-OXIDE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "12296 \"nitric-oxide synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -374846,7 +374846,7 @@ bo:21972 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12296 \"nitric-oxide synthase activity\""^^xsd:string ; + owl:hasValue "NITRIC-OXIDE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -374948,11 +374948,11 @@ bo:16591 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.7.9.3"@en , "SELD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004756"^^xsd:string ; + owl:hasValue "COG0709"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0709"^^xsd:string ; + owl:hasValue "0004756"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -375045,11 +375045,11 @@ bo:14719 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "IDH3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0473"^^xsd:string ; + owl:hasValue "0004449"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004449"^^xsd:string ; + owl:hasValue "COG0473"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -375251,11 +375251,11 @@ bo:21935 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "CheB methylesterase"@en , "protein-L-glutamate-O5-methyl-ester acylhydrolase"@en , "GO:0008984"@en , "methyl-accepting chemotaxis protein methyl-esterase"@en , "protein-glutamate methylesterase"@en , "chemotaxis-specific methylesterase"@en , "protein-L-glutamate-5-O-methyl-ester acylhydrolase"@en , "methylesterase CheB"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0072"^^xsd:string ; + owl:hasValue "3.1.1.61"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.61"^^xsd:string ; + owl:hasValue "GO:0008984"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -375263,7 +375263,7 @@ bo:21935 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008984"^^xsd:string ; + owl:hasValue "AA0072"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -375333,11 +375333,11 @@ bo:16378 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E3.5.5.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0388"^^xsd:string ; + owl:hasValue "0000257"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000257"^^xsd:string ; + owl:hasValue "COG0388"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -375355,16 +375355,6 @@ bo:15812 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06101+K11419+K11420+K11421+K11422+K11423+K11424+K11425+K11427+K11428+K11429+K11431+K11433"@en ; tawny:name "15812"@en . -bo:16466 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "clorobiocin biosynthesis protein CloP"@en ; - rdfs:label "CLOP"@en ; - sybio:accession "Q8GHB3"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16467 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12718"@en ; - tawny:name "16466"@en . - a owl:NamedIndividual , owl:Class , sybio:BiologicalProcess ; rdfs:comment "The cellular synthesis of RNA on a template of DNA."@en ; @@ -375378,6 +375368,16 @@ bo:16466 a sybio:KOGE , owl:NamedIndividual ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:hasPart , . +bo:16466 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "clorobiocin biosynthesis protein CloP"@en ; + rdfs:label "CLOP"@en ; + sybio:accession "Q8GHB3"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16467 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12718"@en ; + tawny:name "16466"@en . + bo:28049 a owl:NamedIndividual , sybio:RBS ; rdfs:label "efeN_RBS"@en ; sybio:NA "AAAAGGAGTTTTGTAACATC"^^xsd:string ; @@ -375398,16 +375398,6 @@ bo:15900 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01750"@en ; tawny:name "15900"@en . -bo:16554 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "phosphonoacetaldehyde reductase"@en ; - rdfs:label "FOMC"@en ; - sybio:accession "P96075"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16553 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12901"@en ; - tawny:name "16554"@en . - bo:28137 a sybio:Shim , owl:NamedIndividual ; rdfs:label "spo0M_RBS_upstream"@en ; sybio:NA "CCTTCTTACGTATATCTGTTGAGAAAAAA"^^xsd:string ; @@ -375418,16 +375408,26 @@ bo:28137 a sybio:Shim , owl:NamedIndividual ; sybio:upstreamOf bo:28136 ; tawny:name "28137"@en . +bo:16554 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "phosphonoacetaldehyde reductase"@en ; + rdfs:label "FOMC"@en ; + sybio:accession "P96075"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16553 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12901"@en ; + tawny:name "16554"@en . + bo:16642 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "glutathione synthase [EC:6.3.2.3]"@en ; rdfs:label "E6.3.2.3"@en , "GSHB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004363"^^xsd:string ; + owl:hasValue "COG0189"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0189"^^xsd:string ; + owl:hasValue "0004363"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -375727,17 +375727,6 @@ bo:17471 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11949"@en ; tawny:name "17471"@en . -bo:1314 a owl:Class ; - rdfs:label "COG4698"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4698"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1314"@en . - bo:29054 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)"@en , "BSU18230"@en ; rdfs:label "BSU18230"@en , "yngG"@en ; @@ -375765,27 +375754,27 @@ bo:29054 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu18230"@en ; tawny:name "29054"@en . -bo:582 a owl:Class ; - rdfs:label "COG0705"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; +bo:1314 a owl:Class ; + rdfs:label "COG4698"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0705"^^xsd:string ; + owl:hasValue "COG4698"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "582"@en . + tawny:name "1314"@en . -bo:1402 a owl:Class ; - rdfs:label "COG2320"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:582 a owl:Class ; + rdfs:label "COG0705"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2320"^^xsd:string ; + owl:hasValue "COG0705"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1402"@en . + tawny:name "582"@en . bo:29142 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU33220"@en ; @@ -375802,6 +375791,17 @@ bo:29142 a owl:NamedIndividual , sybio:CDS ; "4.0"@en ; tawny:name "29142"@en . +bo:1402 a owl:Class ; + rdfs:label "COG2320"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG2320"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1402"@en . + bo:670 a owl:Class ; rdfs:label "COG1239"@en ; rdfs:subClassOf bo:168 , sybio:COG ; @@ -375935,16 +375935,6 @@ bo:4864 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "yhjD"@en ; tawny:name "4864"@en . -bo:16517 a owl:NamedIndividual , sybio:KOGE ; - rdfs:comment "taurine dioxygenase [EC:1.14.11.17]"@en ; - rdfs:label "E1.14.11.17"@en , "TAUD"@en ; - sybio:accession "0000908"^^xsd:string , "COG2175"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16518 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03119"@en ; - tawny:name "16517"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.;"@en ; @@ -375957,6 +375947,16 @@ bo:16517 a owl:NamedIndividual , sybio:KOGE ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16517 a owl:NamedIndividual , sybio:KOGE ; + rdfs:comment "taurine dioxygenase [EC:1.14.11.17]"@en ; + rdfs:label "E1.14.11.17"@en , "TAUD"@en ; + sybio:accession "0000908"^^xsd:string , "COG2175"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16518 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03119"@en ; + tawny:name "16517"@en . + bo:16605 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47 4.4.1.9]"@en ; rdfs:label "ATCYSC1"@en ; @@ -376180,6 +376180,14 @@ bo:457 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "457"@en . +bo:5781 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "pucH"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:33028 ; + sybio:operonGenes "pucH"@en ; + tawny:name "5781"@en . + bo:17434 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "lactate 2-monooxygenase [EC:1.13.12.4]"@en ; rdfs:label "E1.13.12.4"@en ; @@ -376189,14 +376197,6 @@ bo:17434 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00467"@en ; tawny:name "17434"@en . -bo:5781 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "pucH"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:33028 ; - sybio:operonGenes "pucH"@en ; - tawny:name "5781"@en . - bo:29017 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU16450"@en , "signal terminating phosphatase of CheR-mediated methylation of methyl-accepting chemotaxis proteins (MCPs)"@en ; rdfs:label "BSU16450"@en , "MCPs"@en , "cheC"@en , "signal terminating phosphatase of CheR-mediated methylation of methyl-accepting chemotaxis proteins"@en , "ylxJ"@en ; @@ -376257,11 +376257,11 @@ bo:545 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.1.8"^^xsd:string ; + owl:hasValue "2.8.1.8-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.8.1.8-RXN"^^xsd:string ; + owl:hasValue "2.8.1.8"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -376869,6 +376869,16 @@ bo:3111 a sybio:SigDPromoter , owl:NamedIndividual , sybi sybio:upstreamOf bo:31789 , bo:28210 ; tawny:name "3111"@en . +bo:25390 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "carotenoid epsilon-ring hydroxylase(LUT1) - reversible"@en ; + rdfs:label "C08590 <=> C08601"@en , "cpd:C08590 <=> cpd:C08590"@en ; + sybio:accession "RN:R07531"^^xsd:string ; + sybio:catalyzedBy bo:18502 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25390"@en . + bo:10080 a sybio:Protein , bo:625 , owl:NamedIndividual ; rdfs:comment "BSU05450;putative integral inner membrane protein;"@en , "Uncharacterized membrane protein ydfK"@en ; rdfs:label "YdfK"@en , "ydfK"@en , "BSU05450"@en ; @@ -376886,16 +376896,6 @@ bo:10080 a sybio:Protein , bo:625 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10080"@en . -bo:25390 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "carotenoid epsilon-ring hydroxylase(LUT1) - reversible"@en ; - rdfs:label "C08590 <=> C08601"@en , "cpd:C08590 <=> cpd:C08590"@en ; - sybio:accession "RN:R07531"^^xsd:string ; - sybio:catalyzedBy bo:18502 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25390"@en . - bo:6397 a sybio:Operon , owl:NamedIndividual ; rdfs:label "kinE-ogt"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -377819,16 +377819,6 @@ bo:31439 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "31439"@en . -bo:27949 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "yuaF_RBS"@en ; - sybio:NA "ATGAAGAAAGGATGAGGAAG"^^xsd:string ; - sybio:begin "3182559"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3182540"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30773 ; - tawny:name "27949"@en . - bo:12639 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "C15H23N5O14P2"@en ; rdfs:label "Phosphoribosyl-AMP"@en , "N1-(5-Phospho-D-ribosyl)-AMP"@en , "C15H23N5O14P2"@en , "1-(5-Phosphoribosyl)-AMP"@en ; @@ -377840,6 +377830,16 @@ bo:12639 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C02741"@en ; tawny:name "12639"@en . +bo:27949 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "yuaF_RBS"@en ; + sybio:NA "ATGAAGAAAGGATGAGGAAG"^^xsd:string ; + sybio:begin "3182559"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3182540"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30773 ; + tawny:name "27949"@en . + bo:19018 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "acetylgalactosaminyl-0-glycosyl-glycoproteinbeta-1,3-N-acetylglucosaminyltransferase [EC:2.4.1.147]"@en ; rdfs:label "B3GNT6"@en ; @@ -378769,7 +378769,7 @@ bo:13607 a sybio:Compound , owl:NamedIndividual ; rdfs:label "folic reductase"@en , "5 6 7 8-tetrahydrofolate:NADP+ oxidoreductase"@en , "tetrahydrofolate dehydrogenase"@en , "dihydrofolate reductase:thymidylate synthase"@en , "dihydrofolic acid reductase"@en , "NADPH-dihydrofolate reductase"@en , "DHFR"@en , "thymidylate synthetase-dihydrofolate reductase"@en , "dihydrofolate reduction"@en , "pteridine reductase:dihydrofolate reductase"@en , "7 8-dihydrofolate reductase"@en , "dihydrofolic reductase"@en , "GO:0004146"@en , "dihydrofolate reductase"@en , "folic acid reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DIHYDROFOLATEREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0004146"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -378777,7 +378777,7 @@ bo:13607 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004146"^^xsd:string ; + owl:hasValue "DIHYDROFOLATEREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -379183,6 +379183,12 @@ bo:27025 a sybio:MicroarrayExperiment , owl:NamedIndividua sybio:targetExperiment "strain YF316 trpC2 sigY::pMutin1, medium: M.M.+0.02%Glutamine\nharvest point: OD600=0.964, 13h after growth arrest"@en ; tawny:name "27025"@en . +bo:27113 a sybio:FFL , owl:NamedIndividual ; + rdfs:label "spoVT_sigF_sigG"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + tawny:name "27113"@en . + bo:21388 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "irreversible"@en ; rdfs:label "allantoate amidinohydrolase (decarboxylating)"@en , "cpd:C00499 => cpd:C00499"@en , "C00499 + C00001 <=> C02091 + C00014 + C00011"@en ; @@ -379195,12 +379201,6 @@ bo:21388 a owl:NamedIndividual , sybio:Reaction ; sybio:sharesIntermediate bo:21363 ; tawny:name "21388"@en . -bo:27113 a sybio:FFL , owl:NamedIndividual ; - rdfs:label "spoVT_sigF_sigG"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - tawny:name "27113"@en . - bo:21476 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.4.2.3"@en ; @@ -379237,15 +379237,15 @@ bo:21564 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0004109"@en , "coproporphyrinogen:oxygen oxidoreductase"@en , "coproporphyrinogen oxidase"@en , "coproporphyrinogenase"@en , "coproporphyrinogen-III oxidase"@en , "coprogen oxidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004109"^^xsd:string ; + owl:hasValue "8160 \"coproporphyrinogen oxidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.3.3"^^xsd:string ; + owl:hasValue "GO:0004109"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8160 \"coproporphyrinogen oxidase activity\""^^xsd:string ; + owl:hasValue "1.3.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -379661,7 +379661,7 @@ bo:21439 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "gamma-glutamyl carboxylase"@en , "GO:0008488"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.-"^^xsd:string ; + owl:hasValue "GO:0008488"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -379669,7 +379669,7 @@ bo:21439 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008488"^^xsd:string ; + owl:hasValue "4.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -379702,11 +379702,11 @@ bo:21615 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "2'-5' RNA ligase"@en , "GO:0008664"@en , "2'-5'-RNA ligase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008664"^^xsd:string ; + owl:hasValue "6.5.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.5.1.-"^^xsd:string ; + owl:hasValue "GO:0008664"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -379759,11 +379759,11 @@ bo:18867 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "FMN reductase"@en , "riboflavine mononucleotide reductase"@en , "oxidoreductase"@en , "flavine mononucleotide reductase"@en , "GO:0008752"@en , "riboflavin mononucleotide reductase"@en , "flavin mononucleotide reductase"@en , "SsuE"@en , "dehydrogenase"@en , "reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008752"^^xsd:string ; + owl:hasValue "FMNREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FMNREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0008752"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -379796,11 +379796,11 @@ bo:18955 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.1.52"^^xsd:string ; + owl:hasValue "GO:0008840"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008840"^^xsd:string ; + owl:hasValue "4.2.1.52"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -379871,6 +379871,14 @@ bo:4493 a sybio:Operon , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4581 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ydiRS-ydjA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:30989 , bo:30982 , bo:30988 ; + sybio:operonGenes "ydiR,ydiS,ydjA"@en ; + tawny:name "4581"@en . + bo:16234 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "catechol 2,3-dioxygenase [EC:1.13.11.2]"@en ; rdfs:label "E1.13.11.2"@en ; @@ -379884,14 +379892,6 @@ bo:16234 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00446"@en ; tawny:name "16234"@en . -bo:4581 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ydiRS-ydjA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:30989 , bo:30982 , bo:30988 ; - sybio:operonGenes "ydiR,ydiS,ydjA"@en ; - tawny:name "4581"@en . - bo:16322 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "tryptophan 5-monooxygenase [EC:1.14.16.4]"@en ; rdfs:label "E1.14.16.4"@en , "TPH"@en ; @@ -380103,6 +380103,18 @@ bo:10596 a sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10596"@en . +bo:25994 a owl:NamedIndividual , sybio:EC , owl:Class ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.1.1.51"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.1.1.51"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25994"@en . + bo:10684 a bo:436 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "putative transcriptional regulator (GntR family);BSU05700;"@en , "Uncharacterized HTH-type transcriptional regulator ydhC;"@en ; rdfs:label "BSU05700"@en , "YdhC"@en , "ydhC"@en ; @@ -380123,18 +380135,6 @@ bo:10684 a bo:436 , sybio:Protein , owl:NamedIndividual ; tawny:name "10684"@en ; owl:sameAs bo:6661 . -bo:25994 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.1.1.51"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.51"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25994"@en . - bo:17063 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56]"@en ; rdfs:label "E3.1.3.56"@en ; @@ -380307,11 +380307,11 @@ bo:4456 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "S-adenosyl-L-methionine:DNA-cytosine 4-N-methyltransferase"@en , "N4-cytosine-specific DNA methylase"@en , "modification methylase"@en , "S-adenosyl-L-methionine:DNA-cytosine N4-methyltransferase"@en , "restriction-modification system"@en , "m4C-forming MTase"@en , "DNA[cytosine-N4]methyltransferase"@en , "DNA methylase"@en , "GO:0015667"@en , "site-specific DNA-methyltransferase (cytosine-N4-specific)"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.113-RXN"^^xsd:string ; + owl:hasValue "GO:0015667"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015667"^^xsd:string ; + owl:hasValue "2.1.1.113-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -380413,31 +380413,31 @@ bo:19747 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "long-chain acyl coenzyme A dehydrogenase"@en , "acyl-CoA dehydrogenase"@en , "long-chain acyl-CoA dehydrogenase"@en , "medium-chain acyl-CoA dehydrogenase"@en , "fatty acyl coenzyme A dehydrogenase"@en , "acyl CoA dehydrogenase"@en , "GO:0003995"@en , "fatty-acyl-CoA dehydrogenase"@en , "acyl coenzyme A dehydrogenase"@en , "medium-chain acyl-coenzyme A dehydrogenase"@en , "general acyl CoA dehydrogenase"@en , "acyl-CoA:acceptor 2 3-oxidoreductase"@en , "acyl dehydrogenase"@en , "acyl-CoA reductase"@en , "2 3-oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.99.-"^^xsd:string ; + owl:hasValue "4266 \"acyl-CoA dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003995"^^xsd:string ; + owl:hasValue "1.3.99.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN"^^xsd:string ; + owl:hasValue "1.3.99.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACYLCOADEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0019109"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.99.3"^^xsd:string ; + owl:hasValue "GO:0003995"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4266 \"acyl-CoA dehydrogenase activity\""^^xsd:string ; + owl:hasValue "ACYLCOADEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019109"^^xsd:string ; + owl:hasValue "LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -380852,6 +380852,20 @@ bo:30188 a sybio:CDS , owl:NamedIndividual ; "36.0"@en ; tawny:name "30188"@en . +bo:26698 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Ribonucleoside-diphosphate reductase nrdEB subunit alpha;derived protein"@en ; + rdfs:label "BSU20060"@en , "nrdEB"@en , "SPbeta phage ribonucleoside-diphosphate reductase alpha subunit"@en ; + sybio:accession "BSU20060"^^xsd:string , "O31875"^^xsd:string , "50812254"^^xsd:string , "939475"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28750 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , ; + sybio:interactsWith bo:26381 , bo:26382 , bo:26697 ; + sybio:locatedIn ; + sybio:relatedTo bo:26467 , bo:6989 , bo:9495 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26698"@en . + bo:11388 a sybio:Protein , bo:561 , bo:560 , owl:NamedIndividual ; rdfs:comment "BSU04260;DNA topoisomerase III"@en , "DNA topoisomerase 3;"@en ; rdfs:label "topB"@en , "BSU04260"@en , "TopB"@en ; @@ -380872,20 +380886,6 @@ bo:11388 a sybio:Protein , bo:561 , bo:560 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "11388"@en . -bo:26698 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Ribonucleoside-diphosphate reductase nrdEB subunit alpha;derived protein"@en ; - rdfs:label "BSU20060"@en , "nrdEB"@en , "SPbeta phage ribonucleoside-diphosphate reductase alpha subunit"@en ; - sybio:accession "BSU20060"^^xsd:string , "O31875"^^xsd:string , "50812254"^^xsd:string , "939475"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28750 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , ; - sybio:interactsWith bo:26381 , bo:26382 , bo:26697 ; - sybio:locatedIn ; - sybio:relatedTo bo:26467 , bo:6989 , bo:9495 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26698"@en . - bo:30276 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26610"@en ; rdfs:label "yrkA"@en , "BSU26610"@en ; @@ -380911,26 +380911,6 @@ bo:30276 a owl:NamedIndividual , sybio:CDS ; "15.0"@en ; tawny:name "30276"@en . -bo:11476 a sybio:Protein , owl:NamedIndividual , bo:562 ; - rdfs:comment "BSU09120;putative diguanylate cyclase or phosphodiesterase;"@en , "Uncharacterized protein yhcK"@en ; - rdfs:label "BSU09120"@en , "yhcK"@en , "YhcK"@en ; - sybio:AA "LLKELFVNLTILITFNYLFTHLFKERLVHKKDSISFQAVKGLACGLLGVILMVFGFTYQHSIIDLRNIPIMIAALYGGWVSTATALAMITAGRLLITMNTSALYSVIIICIAAIPSLIVSRRKKVQLKHAFYLLIITNSLISFSFYFLIDLHSYELHLYFWIISIAGGMLSLYIIDHETNAHLLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNRVCFSEKKE"@en ; - sybio:accession "BSU09120"^^xsd:string , "P54595"^^xsd:string ; - sybio:biologicalProcess "16.3 : Control"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32204 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "5.2 : From other organisms"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "40672.94"^^xsd:string ; - sybio:pI "8.709358"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:relatedTo bo:6861 , bo:26780 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11476"@en . - bo:26786 a sybio:Protein , owl:NamedIndividual , bo:541 ; rdfs:comment "BSU36370;(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase"@en , "(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase;derived protein"@en ; rdfs:label "FabZ"@en , "YwpB"@en , "fabZ"@en , "BSU36370"@en , "3R"@en ; @@ -380951,6 +380931,26 @@ bo:26786 a sybio:Protein , owl:NamedIndividual , bo:541 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26786"@en . +bo:11476 a sybio:Protein , owl:NamedIndividual , bo:562 ; + rdfs:comment "BSU09120;putative diguanylate cyclase or phosphodiesterase;"@en , "Uncharacterized protein yhcK"@en ; + rdfs:label "BSU09120"@en , "yhcK"@en , "YhcK"@en ; + sybio:AA "LLKELFVNLTILITFNYLFTHLFKERLVHKKDSISFQAVKGLACGLLGVILMVFGFTYQHSIIDLRNIPIMIAALYGGWVSTATALAMITAGRLLITMNTSALYSVIIICIAAIPSLIVSRRKKVQLKHAFYLLIITNSLISFSFYFLIDLHSYELHLYFWIISIAGGMLSLYIIDHETNAHLLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNRVCFSEKKE"@en ; + sybio:accession "BSU09120"^^xsd:string , "P54595"^^xsd:string ; + sybio:biologicalProcess "16.3 : Control"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32204 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "5.2 : From other organisms"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "40672.94"^^xsd:string ; + sybio:pI "8.709358"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:relatedTo bo:6861 , bo:26780 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11476"@en . + bo:30364 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU29940"@en ; rdfs:label "ytlR"@en , "BSU29940"@en ; @@ -380976,17 +380976,6 @@ bo:30364 a sybio:CDS , owl:NamedIndividual ; "72.0"@en ; tawny:name "30364"@en . -bo:11564 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00062"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00062"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11564"@en . - bo:26874 a bo:175 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "DNA polymerase III subunit beta;;derived protein"@en , "BSU00020;DNA polymerase III (beta subunit)"@en ; rdfs:label "dnaN"@en , "BSU00020"@en , "DnaN"@en ; @@ -381006,6 +380995,17 @@ bo:26874 a bo:175 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26874"@en . +bo:11564 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00062"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00062"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11564"@en . + bo:6290 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "ppaC_terminator"@en ; sybio:NA "AAAAAGCATCCCGCGTCGGGATGCTTTTTCTTATTCACC"^^xsd:string ; @@ -381018,22 +381018,6 @@ bo:6290 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:6289 ; tawny:name "6290"@en . -bo:11652 a sybio:Pathway , owl:Class , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00520.png"@en ; - rdfs:label "Amino sugar and nucleotide sugar metabolism"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00520"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11555 , bo:11557 , bo:11553 , bo:11639 , bo:11559 , bo:11656 ; - sybio:derivesFrom bo:11653 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00520"@en ; - tawny:name "11652"@en . - bo:30452 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU32390"@en ; rdfs:label "BSU32390"@en , "yunF"@en ; @@ -381079,16 +381063,32 @@ bo:26962 a bo:1348 , sybio:Protein , owl:NamedIndividual , tawny:name "26962"@en ; owl:sameAs bo:6639 . +bo:11652 a sybio:Pathway , owl:Class , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00520.png"@en ; + rdfs:label "Amino sugar and nucleotide sugar metabolism"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00520"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11555 , bo:11557 , bo:11553 , bo:11639 , bo:11559 , bo:11656 ; + sybio:derivesFrom bo:11653 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00520"@en ; + tawny:name "11652"@en . + bo:18031 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "coenzyme F420 hydrogenase alpha subunit [EC:1.12.98.1]"@en ; rdfs:label "FRHA"@en , "E1.12.98.1A"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3259"^^xsd:string ; + owl:hasValue "0050454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050454"^^xsd:string ; + owl:hasValue "COG3259"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -381147,11 +381147,11 @@ bo:24065 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "reductase cytochrome c"@en , "NADP--cytochrome c reductase"@en , "FAD-cytochrome c reductase"@en , "NADPH-cytochrome P-450 oxidoreductase"@en , "POR"@en , "ferrihemoprotein P-450 reductase"@en , "NADPH--cytochrome P450 reductase"@en , "NADPH-cytochrome p-450 reductase"@en , "aldehyde reductase"@en , "CPR"@en , "NADPH:P-450 reductase"@en , "TPNH2 cytochrome c reductase"@en , "NADPH:P450 reductase"@en , "NADPH-hemoprotein reductase"@en , "cytochrome P450 reductase"@en , "NADPH--cytochrome c oxidoreductase"@en , "NADPH:ferrihemoprotein oxidoreductase"@en , "reduced nicotinamide adenine dinucleotide phosphate-cytochrome c reductase"@en , "NADPH--ferricytochrome c oxidoreductase"@en , "NADPH:hemoprotein oxidoreductase"@en , "NADPH-ferrihemoprotein reductase"@en , "NADPH:cytochrome P450 reductase"@en , "TPNH-cytochrome c reductase"@en , "NADP--cytochrome reductase"@en , "NADPH-dependent cytochrome c reductase"@en , "NADPH--ferrihemoprotein reductase"@en , "cytochrome P-450 reductase"@en , "GO:0003958"@en , "NADPH:cytochrome c reductase"@en , "dihydroxynicotinamide adenine dinucleotide phosphate-cytochrome c reductase"@en , "cytochrome c reductase"@en , "NADPH--cytochrome c reductase"@en , "NADPH--cytochrome P450 oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.2.4"^^xsd:string ; + owl:hasValue "GO:0003958"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003958"^^xsd:string ; + owl:hasValue "1.6.2.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -381263,11 +381263,11 @@ bo:31193 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0016811"@en , "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016811"^^xsd:string ; + owl:hasValue "3.5.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.-"^^xsd:string ; + owl:hasValue "GO:0016811"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -381642,11 +381642,11 @@ bo:14989 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "AGAA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1820"^^xsd:string ; + owl:hasValue "0008448"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008448"^^xsd:string ; + owl:hasValue "COG1820"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -381872,6 +381872,16 @@ bo:12532 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C00431"@en ; tawny:name "12532"@en . +bo:27930 a sybio:RBS , owl:NamedIndividual ; + rdfs:label "spoVS_RBS"@en ; + sybio:NA "AAAACTAAGGGGGAGCAGAA"^^xsd:string ; + sybio:begin "1769915"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "1769934"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:30697 ; + tawny:name "27930"@en . + bo:31420 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU24670"@en ; rdfs:label "comGG"@en , "BSU24670"@en ; @@ -381898,16 +381908,6 @@ bo:31420 a sybio:CDS , owl:NamedIndividual ; "2.0"@en ; tawny:name "31420"@en . -bo:27930 a sybio:RBS , owl:NamedIndividual ; - rdfs:label "spoVS_RBS"@en ; - sybio:NA "AAAACTAAGGGGGAGCAGAA"^^xsd:string ; - sybio:begin "1769915"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "1769934"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:30697 ; - tawny:name "27930"@en . - sybio:hasPositiveFeedback a owl:DatatypeProperty . @@ -381932,15 +381932,15 @@ bo:12620 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15141 \"L-tyrosine:2-oxoglutarate aminotransferase activity\""^^xsd:string ; + owl:hasValue "GO:0004838"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004838"^^xsd:string ; + owl:hasValue "2.6.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.5"^^xsd:string ; + owl:hasValue "15141 \"L-tyrosine:2-oxoglutarate aminotransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -381980,11 +381980,11 @@ bo:15994 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "ASTB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3724"^^xsd:string ; + owl:hasValue "0009015"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009015"^^xsd:string ; + owl:hasValue "COG3724"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -382459,11 +382459,11 @@ bo:16699 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT5"^^xsd:string ; + owl:hasValue "0004373"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004373"^^xsd:string ; + owl:hasValue "GT5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -382485,16 +382485,6 @@ bo:16787 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00885+K12409"@en ; tawny:name "16787"@en . -bo:16875 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "UDP-glucuronate 5'-epimerase [EC:5.1.3.12]"@en ; - rdfs:label "LPSL"@en , "E5.1.3.12"@en ; - sybio:accession "0050379"^^xsd:string , "COG0451"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16874 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01789"@en ; - tawny:name "16875"@en . - a owl:Class ; rdfs:comment "The chemical reactions and pathways involving folic acid and its derivatives."@en ; @@ -382507,6 +382497,16 @@ bo:16875 a owl:NamedIndividual , sybio:KOPR ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:16875 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "UDP-glucuronate 5'-epimerase [EC:5.1.3.12]"@en ; + rdfs:label "LPSL"@en , "E5.1.3.12"@en ; + sybio:accession "0050379"^^xsd:string , "COG0451"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16874 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01789"@en ; + tawny:name "16875"@en . + bo:28458 a owl:NamedIndividual , sybio:RBS ; rdfs:label "ackA_RBS"@en ; sybio:NA "AGTATAAAGGAGCGTCAATC"^^xsd:string ; @@ -383180,6 +383180,18 @@ bo:16838 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10011"@en ; tawny:name "16838"@en . + + a owl:Class ; + rdfs:comment "The directed movement of charged atoms or small charged molecules into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; + rdfs:label "ion transport"@en , "GO:0006811"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006811"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:21193 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "(S)-ureidoglycolate amidohydrolase (decarboxylating)"@en , "cpd:C00603 <=> cpd:C00603"@en , "C00603 + C00001 <=> C00048 + 2 C00014 + C00011"@en ; @@ -383201,18 +383213,6 @@ bo:16926 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122"@en ; tawny:name "16926"@en . - - a owl:Class ; - rdfs:comment "The directed movement of charged atoms or small charged molecules into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; - rdfs:label "ion transport"@en , "GO:0006811"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006811"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:28509 a sybio:RBS , owl:NamedIndividual ; rdfs:label "purT_RBS"@en ; sybio:NA "CAGATAGGAGGGGCAAAG"^^xsd:string ; @@ -383312,11 +383312,11 @@ bo:15070 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "FABB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0304"^^xsd:string ; + owl:hasValue "0004315"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004315"^^xsd:string ; + owl:hasValue "COG0304"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -383421,11 +383421,11 @@ bo:17755 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.5.1.15"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0190"^^xsd:string ; + owl:hasValue "0004487"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004487"^^xsd:string ; + owl:hasValue "COG0190"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -383439,11 +383439,11 @@ bo:17755 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "GO:0050532"@en , "2-phosphosulfolactate phosphatase"@en , "ComB phosphatase"@en , "2-phosphosulpholactate phosphatase"@en , "phosphohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050532"^^xsd:string ; + owl:hasValue "R229-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R229-RXN"^^xsd:string ; + owl:hasValue "GO:0050532"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -383919,15 +383919,15 @@ bo:5889 a sybio:Operon , owl:NamedIndividual ; rdfs:label "tartrate decarboxylase"@en , "GO:0050319"@en , "carboxy-lyase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.1.73"^^xsd:string ; + owl:hasValue "TARTRATE-DECARBOXYLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TARTRATE-DECARBOXYLASE-RXN"^^xsd:string ; + owl:hasValue "GO:0050319"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050319"^^xsd:string ; + owl:hasValue "4.1.1.73"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -384112,11 +384112,11 @@ bo:21119 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "methylase"@en , "methyltransferase"@en , "GO:0008168"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004480"^^xsd:string ; + owl:hasValue "GO:0008168"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.-"^^xsd:string ; + owl:hasValue "GO:0004480"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -384124,7 +384124,7 @@ bo:21119 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008168"^^xsd:string ; + owl:hasValue "2.1.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -384350,11 +384350,11 @@ bo:24933 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "tryptophan formation"@en , "tryptophan synthesis"@en , "aromatic amino acid family biosynthetic process anthranilate pathway"@en , "tryptophan biosynthesis"@en , "GO:0000162"@en , "tryptophan anabolism"@en , "tryptophan biosynthetic process"@en ; rdfs:subClassOf , sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009096"^^xsd:string ; + owl:hasValue "TRPSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "TRPSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0009096"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -384594,24 +384594,6 @@ bo:19552 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "19552"@en . -bo:10188 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Protein csk22"@en , "mother cell-specific membrane sporulation protein;BSU19110"@en ; - rdfs:label "BSU19110"@en , "csk22"@en , "Csk22"@en , "YobW"@en ; - sybio:AA "MHLTLQSVYPAIIIIFFLYKKIKRSIGYQPLKPRWLFTRIILFSLFAFGLSIFSAIHPFLYGYLILGILGGWLLVFFAKKNISFEKRRGKIYFRTHIWVEVILLTLFLSRFLYRVTELYLTSPDLNRLGSYSQSIGTDPLTIGVCFLIAVYYIGFSSFIIKLSRNELEQHEYNKEKDILAR"@en ; - sybio:accession "P94497"^^xsd:string , "BSU19110"^^xsd:string ; - sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:31578 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasRole "1.8 : Sporulation"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "21294.66"^^xsd:string ; - sybio:pI "9.888664"^^xsd:string ; - sybio:productType "f : factor"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10188"@en . - bo:19640 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "pyrAB"@en ; @@ -384634,6 +384616,36 @@ bo:25498 a owl:NamedIndividual , sybio:Reaction ; sybio:memberOf bo:11749 ; tawny:name "25498"@en . +bo:10188 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Protein csk22"@en , "mother cell-specific membrane sporulation protein;BSU19110"@en ; + rdfs:label "BSU19110"@en , "csk22"@en , "Csk22"@en , "YobW"@en ; + sybio:AA "MHLTLQSVYPAIIIIFFLYKKIKRSIGYQPLKPRWLFTRIILFSLFAFGLSIFSAIHPFLYGYLILGILGGWLLVFFAKKNISFEKRRGKIYFRTHIWVEVILLTLFLSRFLYRVTELYLTSPDLNRLGSYSQSIGTDPLTIGVCFLIAVYYIGFSSFIIKLSRNELEQHEYNKEKDILAR"@en ; + sybio:accession "P94497"^^xsd:string , "BSU19110"^^xsd:string ; + sybio:biologicalProcess "16.13 : Shape"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:31578 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasRole "1.8 : Sporulation"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "21294.66"^^xsd:string ; + sybio:pI "9.888664"^^xsd:string ; + sybio:productType "f : factor"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10188"@en . + +bo:25586 a sybio:EC , owl:Class , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.142"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.142"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25586"@en . + bo:10276 a sybio:Protein , bo:459 , owl:NamedIndividual ; rdfs:comment "BSU23620;NADPH-dependent aldo-keto reductase"@en , "Uncharacterized oxidoreductase yqkF"@en ; rdfs:label "BSU23620"@en , "yqkF"@en , "YqkF"@en ; @@ -384652,18 +384664,6 @@ bo:10276 a sybio:Protein , bo:459 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10276"@en . -bo:25586 a sybio:EC , owl:Class , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.142"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.142"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25586"@en . - bo:16001 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "gamma-glutamylputrescine oxidase [EC:1.4.3.-]"@en ; rdfs:label "PUUB"@en , "ORDL"@en ; @@ -384674,6 +384674,16 @@ bo:16001 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09471"@en ; tawny:name "16001"@en . +bo:25674 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label " => "@en , "G13040 + C00001 <=> G09660 + C00191"@en ; + sybio:accession "RN:R07818"^^xsd:string ; + sybio:catalyzingClass bo:20564 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25674"@en . + bo:10364 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized membrane protein yrzS"@en , "BSU27729;conserved hypothetical protein"@en ; rdfs:label "YrzS"@en , "yrzS"@en , "BSU27729"@en ; @@ -384690,16 +384700,6 @@ bo:10364 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10364"@en . -bo:25674 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label " => "@en , "G13040 + C00001 <=> G09660 + C00191"@en ; - sybio:accession "RN:R07818"^^xsd:string ; - sybio:catalyzingClass bo:20564 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25674"@en . - bo:5090 a sybio:Operon , owl:NamedIndividual ; rdfs:label "xynPB"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -384708,6 +384708,18 @@ bo:5090 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "xynP,xynB"@en ; tawny:name "5090"@en . +bo:25762 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.4.1.65"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.1.65"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25762"@en . + bo:10452 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU31510;putative integral inner membrane protein"@en , "Uncharacterized membrane protein yufK;"@en ; rdfs:label "BSU31510"@en , "yufK"@en , "YufK"@en ; @@ -384724,18 +384736,6 @@ bo:10452 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10452"@en . -bo:25762 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.4.1.65"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.65"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25762"@en . - bo:6769 a bo:1701 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "conserved hypothetical protein;BSU32300"@en ; rdfs:label "YutE"@en , "BSU32300"@en ; @@ -384962,6 +384962,24 @@ bo:30081 a sybio:CDS , owl:NamedIndividual ; "56.0"@en ; tawny:name "30081"@en . +bo:26591 a owl:NamedIndividual , bo:1594 , sybio:Protein ; + rdfs:comment "Antiholin-like protein lrgA;;derived protein"@en , "BSU28910;antiholin factor"@en ; + rdfs:label "ysbA"@en , "LrgA"@en , "BSU28910"@en , "lrgA"@en , "YsbA"@en ; + sybio:AA "MSAKKVYGFLTQAFIFAVIMLVSNMIAAIVPIPIPASVVGLVLLFLLLCLKVIKLEQVETLGTSLTSLIGFLFVPSGISVMNSLGVMQQYGLQIVLVILLATIILLGATGLFSQLILSLSGKRKTEADMKTKTVQSPQNNNELVHH"@en ; + sybio:accession "937417"^^xsd:string , "16079943"^^xsd:string , "P94515"^^xsd:string , "BSU28910"^^xsd:string ; + sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:32917 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "15710.375"^^xsd:string ; + sybio:pI "9.466118"^^xsd:string ; + sybio:partOf bo:20360 ; + sybio:productType "f : factor"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26591"@en . + bo:11281 a sybio:Protein , bo:329 , owl:NamedIndividual ; rdfs:comment "ribosomal protein L16;BSU01230"@en , "50S ribosomal protein L16"@en ; rdfs:label "BSU01230"@en , "rplP"@en , "RplP"@en ; @@ -384983,24 +385001,6 @@ bo:11281 a sybio:Protein , bo:329 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11281"@en . -bo:26591 a owl:NamedIndividual , bo:1594 , sybio:Protein ; - rdfs:comment "Antiholin-like protein lrgA;;derived protein"@en , "BSU28910;antiholin factor"@en ; - rdfs:label "ysbA"@en , "LrgA"@en , "BSU28910"@en , "lrgA"@en , "YsbA"@en ; - sybio:AA "MSAKKVYGFLTQAFIFAVIMLVSNMIAAIVPIPIPASVVGLVLLFLLLCLKVIKLEQVETLGTSLTSLIGFLFVPSGISVMNSLGVMQQYGLQIVLVILLATIILLGATGLFSQLILSLSGKRKTEADMKTKTVQSPQNNNELVHH"@en ; - sybio:accession "937417"^^xsd:string , "16079943"^^xsd:string , "P94515"^^xsd:string , "BSU28910"^^xsd:string ; - sybio:biologicalProcess "16.6 : Maintain"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32917 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "15710.375"^^xsd:string ; - sybio:pI "9.466118"^^xsd:string ; - sybio:partOf bo:20360 ; - sybio:productType "f : factor"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26591"@en . - bo:19339 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "6.3.1.5"@en ; @@ -385427,11 +385427,11 @@ bo:32853 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PANTOATE-BETA-ALANINE-LIG-RXN"^^xsd:string ; + owl:hasValue "6.3.2.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.1"^^xsd:string ; + owl:hasValue "PANTOATE-BETA-ALANINE-LIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -385463,6 +385463,26 @@ bo:32941 a sybio:CDS , sybio:KinaseEncodingCDS , owl:NamedInd sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu31520"@en ; tawny:name "32941"@en . +bo:26378 a bo:297 , bo:225 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Cysteinyl-tRNA synthetase;derived protein"@en , "BSU00940;cysteinyl-tRNA synthetase"@en ; + rdfs:label "BSU00940"@en , "cysS"@en , "CysS"@en , "SnpA"@en ; + sybio:AA "MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVGALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSSTNLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDTAQGTRWKRGE"@en ; + sybio:accession "BSU00940"^^xsd:string , "Q06752"^^xsd:string , "936859"^^xsd:string , "16077162"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; + sybio:encodedBy bo:28533 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , , , ; + sybio:hasRole "3.7.2 : Aminoacyl-tRNA synthetases"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn ; + sybio:molecularWeight "53905.535"^^xsd:string ; + sybio:pI "5.223991"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:26622 , bo:26539 , bo:11354 , bo:26349 , bo:11137 , bo:26317 , bo:6881 , bo:26538 , bo:11261 , bo:6831 , bo:26448 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26378"@en . + bo:11068 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "flagellar assembly protein FliT involved in control of flagella expression;BSU35320"@en , "Flagellar protein fliT"@en ; rdfs:label "BSU35320"@en , "fliT"@en , "FliT"@en ; @@ -385482,25 +385502,24 @@ bo:11068 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11068"@en . -bo:26378 a bo:297 , bo:225 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Cysteinyl-tRNA synthetase;derived protein"@en , "BSU00940;cysteinyl-tRNA synthetase"@en ; - rdfs:label "BSU00940"@en , "cysS"@en , "CysS"@en , "SnpA"@en ; - sybio:AA "MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVGALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSSTNLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDTAQGTRWKRGE"@en ; - sybio:accession "BSU00940"^^xsd:string , "Q06752"^^xsd:string , "936859"^^xsd:string , "16077162"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; +bo:26466 a bo:1363 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "Methyl-accepting chemotaxis protein methyltransferase;Chemotaxis protein methyltransferase;derived protein"@en , "methyl-accepting chemotaxis proteins (MCPs) methyltransferase;BSU22720"@en ; + rdfs:label "CheR"@en , "BSU22720"@en , "MCPs"@en , "cheR"@en ; + sybio:AA "MDTYSVFTTKWKQLTGVDLTLYKEAQMKRRLTSLYEKKGFQSFKDFAAALEKDQALLNETLDRMTINVSEFYRNYKRWEVLETAILPLIKTSRPLKIWSAACSTGEEPYTLAMLLDQQKGLPGYQILATDIDEKALEKAKKGVYQERSLQEVPLSVKDRYFTQNANRSYEVKTEIKKNITFKKHNLLADRYEQDFDLIVCRNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQIFNPEKFGLVPADTFFYQKR"@en ; + sybio:accession "A3F3N0"^^xsd:string , "939003"^^xsd:string , "BSU22720"^^xsd:string , "A3F3H3"^^xsd:string , "P31105"^^xsd:string , "50812262"^^xsd:string ; + sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:28533 ; + sybio:encodedBy bo:32884 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , , , ; - sybio:hasRole "3.7.2 : Aminoacyl-tRNA synthetases"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn ; - sybio:molecularWeight "53905.535"^^xsd:string ; - sybio:pI "5.223991"^^xsd:string ; + sybio:hasFunction , , , ; + sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; + sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; + sybio:molecularWeight "29951.385"^^xsd:string ; + sybio:pI "9.021568"^^xsd:string ; sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26622 , bo:26539 , bo:11354 , bo:26349 , bo:11137 , bo:26317 , bo:6881 , bo:26538 , bo:11261 , bo:6831 , bo:26448 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26378"@en . + sybio:relatedTo bo:26700 , bo:26701 , bo:26702 , bo:26699 ; + sybio:taxId "224308"@en ; + tawny:name "26466"@en . bo:11156 a bo:379 , sybio:Protein , owl:NamedIndividual , bo:380 ; rdfs:comment "BSU38390;putative phosphotransferase system enzyme IIC permease component;"@en , "Putative permease IIC component ywbA"@en ; @@ -385523,25 +385542,6 @@ bo:11156 a bo:379 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "11156"@en . -bo:26466 a bo:1363 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "Methyl-accepting chemotaxis protein methyltransferase;Chemotaxis protein methyltransferase;derived protein"@en , "methyl-accepting chemotaxis proteins (MCPs) methyltransferase;BSU22720"@en ; - rdfs:label "CheR"@en , "BSU22720"@en , "MCPs"@en , "cheR"@en ; - sybio:AA "MDTYSVFTTKWKQLTGVDLTLYKEAQMKRRLTSLYEKKGFQSFKDFAAALEKDQALLNETLDRMTINVSEFYRNYKRWEVLETAILPLIKTSRPLKIWSAACSTGEEPYTLAMLLDQQKGLPGYQILATDIDEKALEKAKKGVYQERSLQEVPLSVKDRYFTQNANRSYEVKTEIKKNITFKKHNLLADRYEQDFDLIVCRNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQIFNPEKFGLVPADTFFYQKR"@en ; - sybio:accession "A3F3N0"^^xsd:string , "939003"^^xsd:string , "BSU22720"^^xsd:string , "A3F3H3"^^xsd:string , "P31105"^^xsd:string , "50812262"^^xsd:string ; - sybio:biologicalProcess "16.5 : Explore"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG:String"@en ; - sybio:encodedBy bo:32884 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "1.5 : Motility and chemotaxis"^^xsd:string ; - sybio:localisation "6 : Inner membrane-associated"^^xsd:string ; - sybio:molecularWeight "29951.385"^^xsd:string ; - sybio:pI "9.021568"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:26700 , bo:26701 , bo:26702 , bo:26699 ; - sybio:taxId "224308"@en ; - tawny:name "26466"@en . - bo:30044 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU21130"@en ; rdfs:label "BSU21130"@en , "yonD"@en ; @@ -385871,7 +385871,7 @@ bo:13928 a owl:NamedIndividual , sybio:Compound ; rdfs:label "long-chain-fatty-acid-CoA ligase"@en , "pristanoyl-CoA synthetase"@en , "long chain fatty acyl-CoA synthetase"@en , "lignoceroyl-CoA synthase"@en , "oleoyl-CoA synthetase"@en , "long-chain acyl-CoA synthetase"@en , "palmitoyl-CoA ligase"@en , "palmitoyl-CoA synthase"@en , "long-chain acyl CoA synthetase"@en , "fatty acid thiokinase"@en , "stearoyl-CoA synthetase"@en , "arachidonyl-CoA synthetase"@en , "long-chain fatty acyl coenzyme A synthetase"@en , "acyl-CoA synthetase"@en , "long-chain fatty acid activation"@en , "LCFA synthetase"@en , "ACS3"@en , "long-chain acyl-coenzyme A synthetase"@en , "long-chain acyl-CoA synthetase I"@en , "palmitoyl coenzyme A synthetase"@en , "long-chain fatty acid-CoA ligase"@en , "acyl-activating enzyme"@en , "GO:0004467"@en , "long-chain acyl-CoA synthetase II"@en , "long-chain-fatty-acyl-CoA synthetase"@en , "FAA1"@en , "thiokinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-5143"^^xsd:string ; + owl:hasValue "11544 \"long-chain-fatty-acid-CoA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -385879,19 +385879,19 @@ bo:13928 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.2.1.3"^^xsd:string ; + owl:hasValue "GO:0004467"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004467"^^xsd:string ; + owl:hasValue "PWY-5143"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACYLCOASYN-RXN"^^xsd:string ; + owl:hasValue "6.2.1.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11544 \"long-chain-fatty-acid-CoA ligase activity\""^^xsd:string ; + owl:hasValue "ACYLCOASYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -385959,15 +385959,15 @@ bo:32904 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13439 \"phosphoribosylaminoimidazolecarboxamide formyltransferase activity\""^^xsd:string ; + owl:hasValue "2.1.2.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.3"^^xsd:string ; + owl:hasValue "GO:0004643"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004643"^^xsd:string ; + owl:hasValue "13439 \"phosphoribosylaminoimidazolecarboxamide formyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -385978,10 +385978,6 @@ bo:32904 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate."@en ; rdfs:label "purine-nucleoside phosphorylase"@en , "inosine phosphorylase"@en , "purine-nucleoside:phosphate ribosyltransferase"@en , "PUNPII"@en , "purine ribonucleoside phosphorylase"@en , "purine nucleoside phosphorylase"@en , "purine deoxyribonucleoside phosphorylase"@en , "purine deoxynucleoside phosphorylase"@en , "PUNPI"@en , "GO:0004731"@en , "inosine-guanosine phosphorylase"@en , "PNPase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.1"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "PNP-RXN"^^xsd:string ; owl:onProperty sybio:accession @@ -385994,6 +385990,10 @@ bo:32904 a sybio:CDS , owl:NamedIndividual ; owl:hasValue "14201 \"purine-nucleoside phosphorylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.4.2.1"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -386375,11 +386375,11 @@ bo:12212 a sybio:Compound , owl:NamedIndividual ; rdfs:label "pectic acid transeliminase"@en , "polygalacturonate lyase"@en , "endo-alpha-1 4-polygalacturonic acid lyase"@en , "lyase"@en , "pectic lyase"@en , "polygalacturonic acid trans-eliminase"@en , "pectic acid lyase"@en , "GO:0030570"@en , "pectate transeliminase"@en , "endopectin methyltranseliminase"@en , "alpha-1 4-D-endopolygalacturonic acid lyase"@en , "polygalacturonic acid lyase"@en , "pectin trans-eliminase"@en , "PGA lyase"@en , "polygalacturonic transeliminase"@en , "pectate lyase"@en , "endogalacturonate transeliminase"@en , "PPase-N"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.2.2-RXN"^^xsd:string ; + owl:hasValue "GO:0030570"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030570"^^xsd:string ; + owl:hasValue "4.2.2.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -386522,11 +386522,11 @@ bo:15850 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "CEFF"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0045442"^^xsd:string ; + owl:hasValue "P42220"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P42220"^^xsd:string ; + owl:hasValue "0045442"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -386796,19 +386796,19 @@ bo:21848 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "P-pant transferase"@en , "CoA-[4'-phosphopantetheine]:apo-acyl-carrier-protein 4'-pantetheinephosphotransferase"@en , "holo-[peptidyl-carrier protein] synthase"@en , "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase"@en , "holo-acyl-carrier-protein synthase"@en , "holo-ACP synthase"@en , "acyl carrier protein synthase"@en , "ACPS"@en , "CoA:apo-acyl-carrier-protein pantetheinephosphotransferase"@en , "coenzyme A:fatty acid synthetase apoenzyme 4'-phosphopantetheine transferase"@en , "AcpS"@en , "4'-phosphopantetheinyl transferase"@en , "holosynthase"@en , "holo-[acyl-carrier-protein] synthase"@en , "acyl carrier protein synthetase"@en , "holo-ACP synthetase"@en , "PPTase"@en , "phosphopantetheinyltransferase"@en , "alphaaminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase"@en , "alpha-aminoadipate reductase phosphopantetheinyl transferase"@en , "GO:0008897"@en , "alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase"@en , "acyl carrier protein holoprotein synthetase"@en , "4'-phosphopantetheinyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "26486 \"holo-[acyl-carrier-protein] synthase activity\""^^xsd:string ; + owl:hasValue "HOLO-ACP-SYNTH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008897"^^xsd:string ; + owl:hasValue "2.7.8.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.7"^^xsd:string ; + owl:hasValue "26486 \"holo-[acyl-carrier-protein] synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOLO-ACP-SYNTH-RXN"^^xsd:string ; + owl:hasValue "GO:0008897"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -386951,6 +386951,19 @@ bo:16379 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01237"@en ; tawny:name "16379"@en . + + a owl:Class , owl:NamedIndividual ; + rdfs:comment "Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.;"@en ; + rdfs:label "RNA polymerase complex assembly at promoter"@en , "GO:0006352"@en , "transcription initiation"@en ; + rdfs:subClassOf , sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006352"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:partOf . + bo:15813 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43]"@en ; rdfs:label "SETMAR"@en ; @@ -386971,19 +386984,6 @@ bo:16467 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12718"@en ; tawny:name "16467"@en . - - a owl:Class , owl:NamedIndividual ; - rdfs:comment "Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.;"@en ; - rdfs:label "RNA polymerase complex assembly at promoter"@en , "GO:0006352"@en , "transcription initiation"@en ; - rdfs:subClassOf , sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006352"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:partOf . - bo:15901 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "ornithine cyclodeaminase [EC:4.3.1.12]"@en ; rdfs:label "E4.3.1.12"@en , "OCD"@en ; @@ -387024,6 +387024,14 @@ bo:28138 a sybio:RBS , owl:NamedIndividual ; sybio:upstreamOf bo:31422 ; tawny:name "28138"@en . +bo:4990 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "ykuNOP"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31124 , bo:31123 , bo:28828 ; + sybio:operonGenes "ykuN,ykuO,ykuP"@en ; + tawny:name "4990"@en . + bo:16643 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "glutamate--cysteine ligase [EC:6.3.2.2]"@en ; rdfs:label "GSHA"@en ; @@ -387034,14 +387042,6 @@ bo:16643 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; tawny:name "16643"@en . -bo:4990 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "ykuNOP"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31124 , bo:31123 , bo:28828 ; - sybio:operonGenes "ykuN,ykuO,ykuP"@en ; - tawny:name "4990"@en . - bo:28226 a owl:NamedIndividual , sybio:RBS ; rdfs:label "aprX_RBS"@en ; sybio:NA "TAGGAGGAAAATAC"^^xsd:string ; @@ -387316,17 +387316,6 @@ bo:17472 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11949"@en ; tawny:name "17472"@en . -bo:1315 a owl:Class ; - rdfs:label "COG1999"@en ; - rdfs:subClassOf bo:183 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1999"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1315"@en . - bo:29055 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU15280"@en ; rdfs:label "spoIIN"@en , "BSU15280"@en , "ftsA"@en ; @@ -387357,6 +387346,17 @@ bo:29055 a sybio:CDS , owl:NamedIndividual ; "2423.0"@en ; tawny:name "29055"@en . +bo:1315 a owl:Class ; + rdfs:label "COG1999"@en ; + rdfs:subClassOf bo:183 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1999"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1315"@en . + bo:583 a owl:Class ; rdfs:label "COG0736"@en ; rdfs:subClassOf bo:233 , sybio:COG ; @@ -387381,17 +387381,6 @@ bo:17560 a owl:Class , owl:NamedIndividual , sybio:KOEN ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115"@en ; tawny:name "17560"@en . -bo:1403 a owl:Class ; - rdfs:label "COG1072"@en ; - rdfs:subClassOf bo:168 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1072"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1403"@en . - bo:29143 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BG12382"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -387406,6 +387395,17 @@ bo:29143 a sybio:CDS , owl:NamedIndividual ; "31.0"@en ; tawny:name "29143"@en . +bo:1403 a owl:Class ; + rdfs:label "COG1072"@en ; + rdfs:subClassOf bo:168 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1072"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1403"@en . + bo:671 a owl:Class ; rdfs:label "COG1219"@en ; rdfs:subClassOf bo:173 , sybio:COG ; @@ -387467,11 +387467,11 @@ bo:23594 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"@en , "GO:0006139"@en , "cellular nucleobase nucleoside nucleotide and nucleic acid metabolism"@en , "nucleobase nucleoside nucleotide and nucleic acid metabolism"@en ; rdfs:subClassOf , , sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006139"^^xsd:string ; + owl:hasValue "GO:0055134"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0055134"^^xsd:string ; + owl:hasValue "GO:0006139"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -387520,6 +387520,14 @@ bo:4777 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4776 ; tawny:name "4777"@en . +bo:4865 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yhjE-sipV"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31383 , bo:31008 ; + sybio:operonGenes "yhjE,sipV"@en ; + tawny:name "4865"@en . + bo:16518 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "taurine dioxygenase [EC:1.14.11.17]"@en ; rdfs:label "TAUD"@en , "E1.14.11.17"@en ; @@ -387530,24 +387538,16 @@ bo:16518 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03119"@en ; tawny:name "16518"@en . -bo:4865 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yhjE-sipV"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31383 , bo:31008 ; - sybio:operonGenes "yhjE,sipV"@en ; - tawny:name "4865"@en . - bo:16606 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47 4.4.1.9]"@en ; rdfs:label "ATCYSC1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050017"^^xsd:string ; + owl:hasValue "0004124"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004124"^^xsd:string ; + owl:hasValue "0050017"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -388318,11 +388318,11 @@ bo:5657 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016868"^^xsd:string ; + owl:hasValue "GO:0016777"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016777"^^xsd:string ; + owl:hasValue "GO:0016868"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -388479,6 +388479,17 @@ bo:3200 a sybio:SigEPromoter , owl:NamedIndividual , sybi sybio:upstreamOf bo:32187 ; tawny:name "3200"@en . +bo:25391 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "NADPH (see R07215) - orphan"@en ; + rdfs:label " => "@en , "oxygen 5-oxidoreductase"@en , "C01189 + C00004 + C00080 + C00007 <=> C01164 + C00003 + 2 C00001"@en , "5alpha-cholest-7-en-3beta-ol, NADH"@en ; + sybio:accession "RN:R03310"^^xsd:string ; + sybio:catalyzedBy bo:19096 ; + sybio:catalyzingClass bo:25392 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25391"@en . + bo:10081 a bo:527 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "BSU05480;putative oxidoreductase"@en , "Putative NAD(P)H nitroreductase mhqN"@en ; rdfs:label "YdfN"@en , "MhqN"@en , "BSU05480"@en , "mhqN"@en ; @@ -388498,17 +388509,6 @@ bo:10081 a bo:527 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10081"@en . -bo:25391 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "NADPH (see R07215) - orphan"@en ; - rdfs:label " => "@en , "oxygen 5-oxidoreductase"@en , "C01189 + C00004 + C00080 + C00007 <=> C01164 + C00003 + 2 C00001"@en , "5alpha-cholest-7-en-3beta-ol, NADH"@en ; - sybio:accession "RN:R03310"^^xsd:string ; - sybio:catalyzedBy bo:19096 ; - sybio:catalyzingClass bo:25392 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25391"@en . - bo:6398 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "kinE-ogt_terminator"@en ; sybio:NA "TTAACAAAAAGAAACAAAAAAACCGCTGACTCGGCTCCAAATGAGCAAAGTCCAGCGGTTTTTTAATGCACCT"^^xsd:string ; @@ -388526,11 +388526,11 @@ bo:18139 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "COBK"@en , "CBIJ"@en , "E1.3.1.54"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2099"^^xsd:string ; + owl:hasValue "0016994"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0016994"^^xsd:string ; + owl:hasValue "COG2099"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -389492,11 +389492,11 @@ bo:12728 a owl:NamedIndividual , sybio:Compound ; rdfs:label "2 3-pyrocatechase"@en , "GO:0018577"@en , "catechol:oxygen 2 3-oxidoreductase"@en , "catechol 2 3-oxygenase"@en , "cato2ase"@en , "pyrocatechol 2 3-dioxygenase"@en , "metapyrocatechase"@en , "catechol 2,3-dioxygenase"@en , "catechol oxygenase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0156"^^xsd:string ; + owl:hasValue "1.13.11.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.13.11.2"^^xsd:string ; + owl:hasValue "e0156"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -389794,34 +389794,34 @@ bo:13557 a owl:NamedIndividual , sybio:Compound ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: 2 H2O2 = O2 + 2 H2O.;"@en ; - rdfs:label "haem catalase"@en , "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"@en , "equilase"@en , "caperase"@en , "catalase"@en , "manganese catalase"@en , "bacterial catalase-peroxidase"@en , "heme catalase"@en , "GO:0004096"@en , "optidase"@en , "catalase-peroxidase"@en , "catalase reaction"@en , "CAT"@en ; + rdfs:label "haem catalase"@en , "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"@en , "equilase"@en , "caperase"@en , "catalase"@en , "bacterial catalase-peroxidase"@en , "manganese catalase"@en , "GO:0004096"@en , "heme catalase"@en , "optidase"@en , "catalase-peroxidase"@en , "catalase reaction"@en , "CAT"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "GO:0016952"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016953"^^xsd:string ; + owl:hasValue "GO:0004096"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.11.1.6"^^xsd:string ; + owl:hasValue "CATAL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "76029 \"catalase activity\""^^xsd:string ; + owl:hasValue "e0834"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0834"^^xsd:string ; + owl:hasValue "GO:0016953"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CATAL-RXN"^^xsd:string ; + owl:hasValue "76029 \"catalase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004096"^^xsd:string ; + owl:hasValue "1.11.1.6"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -389976,15 +389976,15 @@ bo:13821 a sybio:Compound , owl:NamedIndividual ; rdfs:label "glucosamine-6-phosphate synthase"@en , "L-glutamine:D-fructose-6-phosphate isomerase"@en , "hexosephosphate aminotransferase"@en , "glucosamine--fructose-6-phosphate aminotransferase"@en , "D-fructose-6-phosphate amidotransferase"@en , "L-glutamine-D-fructose-6-phosphate amidotransferase"@en , "glucosamine 6-phosphate synthase"@en , "GO:0004360"@en , "glutamine-fructose-6-phosphate transaminase (isomerizing)"@en , "GlcN6P synthase"@en , "glucosamine-6-phosphate isomerase"@en , "glucosaminephosphate isomerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004360"^^xsd:string ; + owl:hasValue "L-GLN-FRUCT-6-P-AMINOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.16"^^xsd:string ; + owl:hasValue "GO:0004360"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "L-GLN-FRUCT-6-P-AMINOTRANS-RXN"^^xsd:string ; + owl:hasValue "2.6.1.16"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -390467,6 +390467,17 @@ bo:2785 a owl:NamedIndividual , sybio:ConstitutiveSigAPro sybio:upstreamOf bo:32726 ; tawny:name "2785"@en . +bo:26109 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C07214 <=> cpd:C07214"@en , "C07214 + C00006 + C00001 <=> C07215 + C00005 + C00080"@en ; + sybio:accession "RN:R05663"^^xsd:string ; + sybio:catalyzedBy bo:16237 ; + sybio:catalyzingClass bo:22645 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "26109"@en . + bo:2873 a sybio:SigAPromoter , sybio:ConstitutiveSigAPromoter , sybio:Promoter , owl:NamedIndividual ; rdfs:label "pssA-P1"@en ; sybio:NA "GCGTCTTGTCCTTTTTATGCGGGGGGATAAAATAGTAAGGAACATG"^^xsd:string ; @@ -390480,17 +390491,6 @@ bo:2873 a sybio:SigAPromoter , sybio:ConstitutiveSigAProm sybio:upstreamOf bo:33026 ; tawny:name "2873"@en . -bo:26109 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C07214 <=> cpd:C07214"@en , "C07214 + C00006 + C00001 <=> C07215 + C00005 + C00080"@en ; - sybio:accession "RN:R05663"^^xsd:string ; - sybio:catalyzedBy bo:16237 ; - sybio:catalyzingClass bo:22645 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "26109"@en . - bo:2961 a sybio:Promoter , sybio:ConstitutiveSigAPromoter , sybio:SigAPromoter , owl:NamedIndividual ; rdfs:label "yaaA-TR5"@en ; sybio:NA "CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGATATTTG"^^xsd:string ; @@ -391002,11 +391002,11 @@ bo:15442 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "DEOA"@en , "E2.4.2.4"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009032"^^xsd:string ; + owl:hasValue "COG0213"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0213"^^xsd:string ; + owl:hasValue "0009032"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -391113,22 +391113,6 @@ bo:22482 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11610 , bo:11749 ; tawny:name "22482"@en . -bo:3489 a sybio:Operator , sybio:NegativelyRegulatedOperator , owl:NamedIndividual ; - rdfs:comment "Negative"@en ; - rdfs:label "AbrB_comK"@en ; - sybio:NA "CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAAGGATGGAGGCCATAATATG"^^xsd:string ; - sybio:annotatedSequence "CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAAGGATGGAGGCCATAATATG"@en ; - sybio:begin "1116992"@en ; - sybio:boundBy bo:6849 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1117111"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:interactsWith bo:2737 ; - sybio:pmid "12586407,8083167"^^xsd:string ; - sybio:regulationType "Negative"^^xsd:string ; - sybio:sigmaFactor "SigA"^^xsd:string ; - tawny:name "3489"@en . - bo:9214 a owl:NamedIndividual , bo:769 , bo:353 , sybio:Protein ; rdfs:comment "Uncharacterized ABC transporter ATP-binding protein yknU"@en , "putative ABC transporter (ATP-binding protein);BSU14320"@en ; rdfs:label "BSU14320"@en , "yknU"@en , "YknU"@en ; @@ -391150,6 +391134,22 @@ bo:9214 a owl:NamedIndividual , bo:769 , bo:353 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "9214"@en . +bo:3489 a sybio:Operator , sybio:NegativelyRegulatedOperator , owl:NamedIndividual ; + rdfs:comment "Negative"@en ; + rdfs:label "AbrB_comK"@en ; + sybio:NA "CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAAGGATGGAGGCCATAATATG"^^xsd:string ; + sybio:annotatedSequence "CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAAGGATGGAGGCCATAATATG"@en ; + sybio:begin "1116992"@en ; + sybio:boundBy bo:6849 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1117111"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:interactsWith bo:2737 ; + sybio:pmid "12586407,8083167"^^xsd:string ; + sybio:regulationType "Negative"^^xsd:string ; + sybio:sigmaFactor "SigA"^^xsd:string ; + tawny:name "3489"@en . + bo:22570 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "4-Nitrophenyl phosphate phosphohydrolase"@en , "C03360 + C00001 <=> C00870 + C00009"@en , "cpd:C03360 => cpd:C03360"@en ; @@ -391399,16 +391399,6 @@ bo:4494 a sybio:Terminator , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16235 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]"@en ; - rdfs:label "E1.2.1.28"@en , "XYLC"@en ; - sybio:accession "0018479"^^xsd:string , "COG1012"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16236 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00141"@en ; - tawny:name "16235"@en . - bo:4582 a sybio:Operon , owl:NamedIndividual ; rdfs:label "ydjC"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -391417,15 +391407,15 @@ bo:4582 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "ydjC"@en ; tawny:name "4582"@en . -bo:16323 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "tryptophan 5-monooxygenase [EC:1.14.16.4]"@en ; - rdfs:label "TPH"@en , "E1.14.16.4"@en ; - sybio:accession "0004510"^^xsd:string ; +bo:16235 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]"@en ; + rdfs:label "E1.2.1.28"@en , "XYLC"@en ; + sybio:accession "0018479"^^xsd:string , "COG1012"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16322 ; + sybio:encodes bo:16236 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00502"@en ; - tawny:name "16323"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00141"@en ; + tawny:name "16235"@en . bo:4670 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yflE_terminator"@en ; @@ -391439,6 +391429,16 @@ bo:4670 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4669 ; tawny:name "4670"@en . +bo:16323 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "tryptophan 5-monooxygenase [EC:1.14.16.4]"@en ; + rdfs:label "TPH"@en , "E1.14.16.4"@en ; + sybio:accession "0004510"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16322 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00502"@en ; + tawny:name "16323"@en . + bo:16411 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "quinate dehydrogenase (pyrroloquinoline-quinone) [EC:1.1.99.25]"@en ; rdfs:label "E1.1.99.25"@en , "QUIA"@en ; @@ -391629,6 +391629,16 @@ bo:10597 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10597"@en . +bo:25995 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "NAD+ (see R02352) - reversible"@en ; + rdfs:label "cpd:C00468 <=> cpd:C00468"@en , "Estradiol-17beta"@en , "NADP+ 17-oxidoreductase"@en , "C00951 + C00006 <=> C00468 + C00005 + C00080"@en ; + sybio:accession "RN:R02353"^^xsd:string ; + sybio:catalyzingClass bo:25972 , bo:25994 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25995"@en . + bo:10685 a bo:428 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "transcriptional regulator (GntR family);BSU05850"@en , "HTH-type transcriptional regulator gmuR"@en ; rdfs:label "BSU05850"@en , "gmuR"@en , "GmuR"@en , "YdhQ"@en ; @@ -391649,16 +391659,6 @@ bo:10685 a bo:428 , sybio:Protein , owl:NamedIndividual ; tawny:name "10685"@en ; owl:sameAs bo:6621 . -bo:25995 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "NAD+ (see R02352) - reversible"@en ; - rdfs:label "cpd:C00468 <=> cpd:C00468"@en , "Estradiol-17beta"@en , "NADP+ 17-oxidoreductase"@en , "C00951 + C00006 <=> C00468 + C00005 + C00080"@en ; - sybio:accession "RN:R02353"^^xsd:string ; - sybio:catalyzingClass bo:25972 , bo:25994 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25995"@en . - bo:17064 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "inositol-1,4,5-trisphosphate 5-phosphatase [EC:3.1.3.56]"@en ; rdfs:label "E3.1.3.56"@en ; @@ -391762,11 +391762,11 @@ bo:23098 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "D-Ala-D-Ala synthetase"@en , "D-alanine:D-alanine ligase"@en , "alanine:alanine ligase"@en , "D-alanine-D-alanine ligase"@en , "GO:0008716"@en , "D-alanyl-D-alanine synthetase"@en , "D-alanylalanine synthetase"@en , "alanylalanine synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DALADALALIG-RXN"^^xsd:string ; + owl:hasValue "GO:0008716"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008716"^^xsd:string ; + owl:hasValue "DALADALALIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -392653,19 +392653,19 @@ bo:24066 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003959"^^xsd:string ; + owl:hasValue "1.6.99.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NADPH-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "GO:0016660"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016660"^^xsd:string ; + owl:hasValue "NADPH-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.6.99.1"^^xsd:string ; + owl:hasValue "GO:0003959"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -392792,11 +392792,11 @@ bo:31194 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2753 \"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides\""^^xsd:string ; + owl:hasValue "3.5.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.2.-"^^xsd:string ; + owl:hasValue "2753 \"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -392914,7 +392914,7 @@ bo:12570 a sybio:Compound , owl:NamedIndividual ; rdfs:label "thiaminokinase"@en , "thiamin pyrophosphotransferase"@en , "TPTase"@en , "GO:0004788"@en , "ATP:thiamin pyrophosphotransferase"@en , "thiamine diphosphokinase"@en , "thiamin:ATP pyrophosphotransferase"@en , "ATP:thiamine diphosphotransferase"@en , "thiamine pyrophosphokinase"@en , "thiamin diphosphokinase"@en , "thiamin pyrophosphokinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.6.2"^^xsd:string ; + owl:hasValue "THIAMIN-PYROPHOSPHOKINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -392922,7 +392922,7 @@ bo:12570 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THIAMIN-PYROPHOSPHOKINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.6.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -393509,11 +393509,11 @@ bo:19000 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "B4GALT7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0046525"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046525"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -394075,11 +394075,11 @@ bo:15958 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "oxidoreductase process"@en , "oxidation reduction"@en , "GO:0055114"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0055114"^^xsd:string ; + owl:hasValue "Redox"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Redox"^^xsd:string ; + owl:hasValue "GO:0055114"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -394100,11 +394100,11 @@ bo:16876 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E5.1.3.12"@en , "LPSL"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0451"^^xsd:string ; + owl:hasValue "0050379"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050379"^^xsd:string ; + owl:hasValue "COG0451"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -394411,7 +394411,7 @@ bo:13501 a owl:NamedIndividual , sybio:Compound ; rdfs:label "acetamidase"@en , "GO:0004040"@en , "acylamidase"@en , "N-acetylaminohydrolase"@en , "acylase"@en , "fatty acylamidase"@en , "amidase"@en , "amidohydrolase"@en , "acylamide amidohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004040"^^xsd:string ; + owl:hasValue "e0068"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -394419,11 +394419,11 @@ bo:13501 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0068"^^xsd:string ; + owl:hasValue "3.5.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.5.1.4"^^xsd:string ; + owl:hasValue "GO:0004040"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -394821,51 +394821,51 @@ bo:14330 a owl:NamedIndividual , sybio:Compound ; rdfs:label "histidine degradation"@en , "histidine breakdown"@en , "histidine catabolic process"@en , "histidine catabolism"@en , "GO:0006548"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592482 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "526266 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "70921 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "487432 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568707 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "448592 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487432 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "585948 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542549 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "469721 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469721 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "592482 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526266 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "GO:0006548"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006548"^^xsd:string ; + owl:hasValue "507389 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581910 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "542549 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585948 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "70921 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507389 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "581910 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448592 \"Histidine catabolism\""^^xsd:string ; + owl:hasValue "568707 \"Histidine catabolism\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -394880,6 +394880,22 @@ bo:16839 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10011"@en ; tawny:name "16839"@en . + + a owl:Class ; + rdfs:comment "The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; + rdfs:label "GO:0006812"@en , "cation transport"@en ; + rdfs:subClassOf sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006819"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006812"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:21194 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.5.3.19"@en ; @@ -394909,22 +394925,6 @@ bo:16927 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122"@en ; tawny:name "16927"@en . - - a owl:Class ; - rdfs:comment "The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; - rdfs:label "GO:0006812"@en , "cation transport"@en ; - rdfs:subClassOf sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006812"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006819"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:21282 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "C01260 + C00001 <=> 2 C00008"@en , "cpd:C01260 => cpd:C01260"@en , "P1,P4-bis(5'-adenosyl)-tetraphosphate nucleotidebisphosphohydrolase"@en ; @@ -395453,11 +395453,11 @@ bo:18673 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "ALG7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0472"^^xsd:string ; + owl:hasValue "0003975"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003975"^^xsd:string ; + owl:hasValue "COG0472"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -395584,11 +395584,11 @@ bo:17719 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AACS"@en , "ACSA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0365"^^xsd:string ; + owl:hasValue "0030729"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030729"^^xsd:string ; + owl:hasValue "COG0365"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -396206,6 +396206,16 @@ bo:19553 a owl:NamedIndividual , sybio:Enzyme ; tawny:name "19553"@en ; owl:sameAs bo:26244 . +bo:25499 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "orphan"@en ; + rdfs:label "C16337 <=> C16336 + C00001"@en , " => "@en ; + sybio:accession "RN:R07897"^^xsd:string ; + sybio:catalyzingClass bo:19485 , bo:20948 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25499"@en . + bo:19641 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "pyrD"@en ; @@ -396217,16 +396227,6 @@ bo:19641 a owl:NamedIndividual , sybio:Enzyme ; tawny:name "19641"@en ; owl:sameAs bo:26339 . -bo:25499 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "orphan"@en ; - rdfs:label "C16337 <=> C16336 + C00001"@en , " => "@en ; - sybio:accession "RN:R07897"^^xsd:string ; - sybio:catalyzingClass bo:19485 , bo:20948 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25499"@en . - bo:10189 a owl:NamedIndividual , sybio:Protein , bo:966 ; rdfs:comment "putative carboxypeptidase;BSU19170"@en , "Putative carboxypeptidase yocD"@en ; rdfs:label "YocD"@en , "BSU19170"@en , "yocD"@en ; @@ -396807,7 +396807,7 @@ bo:19604 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "alpha-isopropylmalate synthetase"@en , "alpha-IPM synthetase"@en , "2-isopropylmalate synthase"@en , "3-carboxy-3-hydroxy-4-methylpentanoate 3-methyl-2-oxobutanoate-lyase"@en , "isopropylmalate synthase"@en , "alpha-isopropylmalate synthase"@en , "acetyl-CoA:3-methyl-2-oxobutanoate C-acetyltransferase"@en , "GO:0003852"@en , "isopropylmalate synthetase"@en , "alpha-isopropylmalic synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.3.13"^^xsd:string ; + owl:hasValue "GO:0003852"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -396815,7 +396815,7 @@ bo:19604 a owl:NamedIndividual , sybio:Enzyme ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003852"^^xsd:string ; + owl:hasValue "2.3.3.13"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -397584,27 +397584,27 @@ bo:32817 a owl:NamedIndividual , sybio:CDS ; rdfs:label "alpha amylase"@en , "glycogenase"@en , "taka-amylase A"@en , "alpha-amylase"@en , "endoamylase"@en , "GO:0004556"@en , "1 4-alpha-D-glucan glucanohydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALPHA-AMYL-RXN"^^xsd:string ; + owl:hasValue "RXN-1823"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004556"^^xsd:string ; + owl:hasValue "3.2.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-1823"^^xsd:string ; + owl:hasValue "RXN-1825"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-1825"^^xsd:string ; + owl:hasValue "GO:0004556"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12418 \"alpha-amylase activity\""^^xsd:string ; + owl:hasValue "ALPHA-AMYL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.1"^^xsd:string ; + owl:hasValue "12418 \"alpha-amylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -397642,11 +397642,11 @@ bo:32905 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GAR formyltransferase"@en , "GART"@en , "2-amino-N-ribosylacetamide 5'-phosphate transformylase"@en , "5 10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase"@en , "5'-phosphoribosylglycinamide transformylase"@en , "GAR TFase"@en , "GAR transformylase"@en , "GO:0004644"@en , "10-formyltetrahydrofolate:5'-phosphoribosylglycinamide N-formyltransferase"@en , "glycinamide ribonucleotide transformylase"@en , "phosphoribosylglycinamide formyltransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004644"^^xsd:string ; + owl:hasValue "2.1.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.2.2"^^xsd:string ; + owl:hasValue "13440 \"phosphoribosylglycinamide formyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -397654,7 +397654,7 @@ bo:32905 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "13440 \"phosphoribosylglycinamide formyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0004644"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -397691,19 +397691,19 @@ bo:30008 a owl:NamedIndividual , sybio:CDS ; rdfs:label "glycine:tRNAGly ligase"@en , "glycine-tRNA ligase"@en , "glycyl-transfer ribonucleate synthetase"@en , "glycyl-tRNA synthetase"@en , "glycyl-transfer ribonucleic acid synthetase"@en , "glycyl translase"@en , "GO:0004820"@en , "glycyl-transfer RNA synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.14"^^xsd:string ; + owl:hasValue "GO:0004820"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLYCINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "15097 \"glycine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15097 \"glycine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GLYCINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004820"^^xsd:string ; + owl:hasValue "6.1.1.14"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -397829,11 +397829,11 @@ bo:14758 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E1.1.1.21"@en , "AKR1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004032"^^xsd:string ; + owl:hasValue "COG0656"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0656"^^xsd:string ; + owl:hasValue "0004032"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -398155,11 +398155,11 @@ bo:15763 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "LYSJ"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003942"^^xsd:string ; + owl:hasValue "COG4992"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4992"^^xsd:string ; + owl:hasValue "0003942"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -398491,7 +398491,7 @@ bo:21849 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "S-adenosylmethionine homocysteine transmethylase"@en , "methylmethionine:homocysteine methyltransferase"@en , "adenosylmethionine:homocysteine methyltransferase"@en , "S-adenosylmethionine-homocysteine transmethylase"@en , "L-homocysteine S-methyltransferase"@en , "S-adenosylmethionine:homocysteine methyltransferase"@en , "GO:0008898"@en , "S-adenosyl-L-methionine:L-homocysteine methyltransferase"@en , "homocysteine S-methyltransferase"@en , "adenosylmethionine transmethylase"@en , "homocysteine transmethylase"@en , "homocysteine methyltransferase"@en , "S-adenosyl-L-methionine:L-homocysteine S-methyltransferase"@en , "S-methylmethionine homocysteine transmethylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "2.1.1.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -398499,7 +398499,7 @@ bo:21849 a sybio:EC , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.10"^^xsd:string ; + owl:hasValue "HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -398590,6 +398590,14 @@ bo:1441 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1441"@en . +bo:91 a sybio:RNA , owl:NamedIndividual ; + rdfs:comment "SAM"@en ; + rdfs:label "BSU_misc_RNA_20"@en ; + sybio:accession "BSU_misc_RNA_20"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "91"@en . + a owl:Class ; rdfs:comment "The chemical reactions and pathways involving lactate, the anion of lactic acid."@en ; @@ -398602,14 +398610,6 @@ bo:1441 a owl:Class ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:91 a sybio:RNA , owl:NamedIndividual ; - rdfs:comment "SAM"@en ; - rdfs:label "BSU_misc_RNA_20"@en ; - sybio:accession "BSU_misc_RNA_20"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "91"@en . - bo:15638 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "short/branched chain acyl-CoA dehydrogenase [EC:1.3.99.12]"@en ; rdfs:label "ACADSB"@en ; @@ -398665,6 +398665,19 @@ bo:15726 a sybio:KOPR , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + + a owl:NamedIndividual , sybio:BiologicalProcess , owl:Class ; + rdfs:comment "The process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA."@en ; + rdfs:label "transcription termination"@en , "transcriptional complex disassembly"@en , "GO:0006353"@en ; + rdfs:subClassOf sybio:BiologicalProcess ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006353"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:partOf . + bo:15814 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43]"@en ; rdfs:label "SETMAR"@en ; @@ -398691,19 +398704,6 @@ bo:16468 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12718"@en ; tawny:name "16468"@en . - - a owl:NamedIndividual , sybio:BiologicalProcess , owl:Class ; - rdfs:comment "The process by which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA."@en ; - rdfs:label "transcription termination"@en , "transcriptional complex disassembly"@en , "GO:0006353"@en ; - rdfs:subClassOf sybio:BiologicalProcess ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006353"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:partOf . - bo:15902 a owl:NamedIndividual , sybio:KOGE ; rdfs:comment "proline dehydrogenase [EC:1.5.99.8]"@en ; rdfs:label "PUTA"@en , "E1.5.99.8"@en ; @@ -398734,6 +398734,14 @@ bo:28139 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31427 ; tawny:name "28139"@en . +bo:4991 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "rok"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28898 ; + sybio:operonGenes "rok"@en ; + tawny:name "4991"@en . + bo:16644 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "glutamate--cysteine ligase [EC:6.3.2.2]"@en ; rdfs:label "GSHA"@en ; @@ -398744,14 +398752,6 @@ bo:16644 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; tawny:name "16644"@en . -bo:4991 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "rok"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28898 ; - sybio:operonGenes "rok"@en ; - tawny:name "4991"@en . - bo:28227 a sybio:RBS , owl:NamedIndividual ; rdfs:label "yrvD_RBS"@en ; sybio:NA "GAAGTTTGGGGGAAAAGAGA"^^xsd:string ; @@ -399012,17 +399012,6 @@ bo:17473 a sybio:KOEN , owl:NamedIndividual , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11949"@en ; tawny:name "17473"@en . -bo:1316 a owl:Class ; - rdfs:label "COG1171"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1171"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1316"@en . - bo:29056 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU40780"@en ; rdfs:label "BSU40780"@en , "tetL"@en ; @@ -399050,6 +399039,17 @@ bo:29056 a sybio:CDS , owl:NamedIndividual ; "15.0"@en ; tawny:name "29056"@en . +bo:1316 a owl:Class ; + rdfs:label "COG1171"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG1171"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1316"@en . + bo:584 a owl:Class ; rdfs:label "COG2834"@en ; rdfs:subClassOf bo:189 , sybio:COG ; @@ -399071,17 +399071,6 @@ bo:17561 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115"@en ; tawny:name "17561"@en . -bo:1404 a owl:Class ; - rdfs:label "COG0572"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0572"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1404"@en . - bo:29144 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU20040"@en ; sybio:accession "BSU20040"^^xsd:string ; @@ -399097,6 +399086,17 @@ bo:29144 a sybio:CDS , owl:NamedIndividual ; "159.0"@en ; tawny:name "29144"@en . +bo:1404 a owl:Class ; + rdfs:label "COG0572"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0572"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1404"@en . + bo:672 a owl:Class ; rdfs:label "COG0714"@en ; rdfs:subClassOf bo:183 , sybio:COG ; @@ -399144,6 +399144,14 @@ bo:760 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "760"@en . +bo:54 a sybio:RNA , owl:NamedIndividual ; + rdfs:comment "transfer RNA-Glu"@en ; + rdfs:label "TrnS-Glu"@en , "BSU_tRNA_47"@en ; + sybio:accession "BSU_tRNA_47"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "54"@en . + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + 5-dehydro-2-deoxy-D-gluconate = ADP + 6-phospho-5-dehydro-2-deoxy-D-gluconate."@en ; @@ -399154,24 +399162,16 @@ bo:760 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.92"^^xsd:string ; + owl:hasValue "5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN"^^xsd:string ; + owl:hasValue "2.7.1.92"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:54 a sybio:RNA , owl:NamedIndividual ; - rdfs:comment "transfer RNA-Glu"@en ; - rdfs:label "TrnS-Glu"@en , "BSU_tRNA_47"@en ; - sybio:accession "BSU_tRNA_47"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "54"@en . - bo:23595 a sybio:EC , owl:NamedIndividual , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.1.3.66"@en ; @@ -399268,11 +399268,11 @@ bo:16519 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "TAUD"@en , "E1.14.11.17"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000908"^^xsd:string ; + owl:hasValue "COG2175"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2175"^^xsd:string ; + owl:hasValue "0000908"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -399558,11 +399558,11 @@ bo:17524 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E3.5.1.49"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004328"^^xsd:string ; + owl:hasValue "COG2421"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2421"^^xsd:string ; + owl:hasValue "0004328"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -400362,19 +400362,19 @@ bo:18228 a sybio:KOPR , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8669"^^xsd:string ; + owl:hasValue "GO:0033742"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008113"^^xsd:string ; + owl:hasValue "RXN-8669"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0033742"^^xsd:string ; + owl:hasValue "1.8.4.11"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.4.11"^^xsd:string ; + owl:hasValue "GO:0008113"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -400579,15 +400579,15 @@ bo:4030 a sybio:NegativelyRegulatedOperator , sybio:Opera rdfs:label "1 3-1 4-beta-D-glucan 4-glucanohydrolase"@en , "1 3;1 4-beta-glucan endohydrolase"@en , "mixed linkage beta-glucanase"@en , "4-glucanohydrolase"@en , "endo-beta-1 3-1 4 glucanase"@en , "GO:0042972"@en , "1 3;1 4-beta-glucan 4-glucanohydrolase"@en , "licheninase"@en , "beta-glucanase"@en , "lichenase"@en , "1 3-1 4-beta-glucan 4-glucanohydrolase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.73-RXN"^^xsd:string ; + owl:hasValue "3.2.1.73"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.73"^^xsd:string ; + owl:hasValue "GO:0042972"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042972"^^xsd:string ; + owl:hasValue "3.2.1.73-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -400669,11 +400669,11 @@ bo:19057 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "HTRB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008415"^^xsd:string ; + owl:hasValue "COG1560"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1560"^^xsd:string ; + owl:hasValue "0008415"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -400734,7 +400734,7 @@ bo:19145 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "ATP:thiamine-phosphate phosphotransferase"@en , "thiamin phosphate kinase"@en , "thiamine-phosphate kinase"@en , "thiamine-monophosphate kinase"@en , "thiamin monophosphokinase"@en , "thiamin monophosphatase"@en , "GO:0009030"@en , "thiamin-monophosphate kinase"@en , "thiamin-phosphate kinase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THI-P-KIN-RXN"^^xsd:string ; + owl:hasValue "GO:0009030"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -400742,7 +400742,7 @@ bo:19145 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009030"^^xsd:string ; + owl:hasValue "THI-P-KIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -401589,11 +401589,11 @@ bo:13646 a owl:NamedIndividual , sybio:Compound ; rdfs:label "serine-type carboxypeptidase"@en , "GO:0004185"@en , "serine carboxypeptidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.16.-"^^xsd:string ; + owl:hasValue "GO:0004185"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004185"^^xsd:string ; + owl:hasValue "3.4.16.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -402176,14 +402176,14 @@ bo:13609 a owl:NamedIndividual , sybio:Compound ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+."@en ; - rdfs:label "dihydrolipoyl dehydrogenase"@en , "oxidoreductase"@en , "lipoamide oxidoreductase"@en , "LDP-Glc"@en , "lipoate dehydrogenase"@en , "lipoic acid dehydrogenase"@en , "dihydrolipoamide:NAD+ oxidoreductase"@en , "dihydrolipoamide dehydrogenase"@en , "lipoamide reductase"@en , "lipoyl dehydrogenase"@en , "glycine-cleavage system L-protein"@en , "dihydrolipoamide reduction"@en , "dehydrolipoate dehydrogenase"@en , "L-protein"@en , "diaphorase"@en , "dihydrolipoic dehydrogenase"@en , "E3 component of alpha-ketoacid dehydrogenase complexes"@en , "dihydrolipoylprotein reduction"@en , "LDP-Val"@en , "lipoamide dehydrogenase"@en , "dihydrothioctic dehydrogenase"@en , "GO:0004148"@en ; + rdfs:label "dihydrolipoyl dehydrogenase"@en , "oxidoreductase"@en , "lipoamide oxidoreductase"@en , "LDP-Glc"@en , "lipoate dehydrogenase"@en , "lipoic acid dehydrogenase"@en , "dihydrolipoamide:NAD+ oxidoreductase"@en , "dihydrolipoamide dehydrogenase"@en , "lipoamide reductase"@en , "lipoyl dehydrogenase"@en , "glycine-cleavage system L-protein"@en , "dihydrolipoamide reduction"@en , "L-protein"@en , "dehydrolipoate dehydrogenase"@en , "diaphorase"@en , "dihydrolipoic dehydrogenase"@en , "E3 component of alpha-ketoacid dehydrogenase complexes"@en , "dihydrolipoylprotein reduction"@en , "LDP-Val"@en , "lipoamide dehydrogenase"@en , "dihydrothioctic dehydrogenase"@en , "GO:0004148"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8399 \"dihydrolipoyl dehydrogenase activity\""^^xsd:string ; + owl:hasValue "1.8.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.8.1.4"^^xsd:string ; + owl:hasValue "8399 \"dihydrolipoyl dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -402230,15 +402230,15 @@ bo:2698 a sybio:SigAPromoter , sybio:ConstitutiveSigAProm rdfs:label "ferredoxin-TPN reductase"@en , "NADPH:ferredoxin oxidoreductase"@en , "reduced nicotinamide adenine dinucleotide phosphate-adrenodoxin reductase"@en , "ferredoxin-nicotinamide adenine dinucleotide phosphate reductase"@en , "ferredoxin-NADP reductase"@en , "NADP:ferredoxin oxidoreductase"@en , "GO:0004324"@en , "ferredoxin-NADP+ reductase"@en , "ferredoxin-NADP oxidoreductase"@en , "ferredoxin:NADP+ oxidoreductase"@en , "ferredoxin-nicotinamide-adenine dinucleotide phosphate reductase"@en , "TPNH-ferredoxin reductase"@en , "ferredoxin-NADP-oxidoreductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004324"^^xsd:string ; + owl:hasValue "1.18.1.2-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.18.1.2-RXN"^^xsd:string ; + owl:hasValue "1.18.1.2"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.18.1.2"^^xsd:string ; + owl:hasValue "GO:0004324"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -402267,15 +402267,15 @@ bo:2786 a sybio:SigAPromoter , sybio:Promoter , owl:Named rdfs:label "GO:0004412"@en , "homoserine dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004412"^^xsd:string ; + owl:hasValue "1.1.1.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.3"^^xsd:string ; + owl:hasValue "HOMOSERDEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMOSERDEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0004412"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -402380,11 +402380,11 @@ bo:17989 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "MTRE"@en , "E2.1.1.86E"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG4059"^^xsd:string ; + owl:hasValue "0030269"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030269"^^xsd:string ; + owl:hasValue "COG4059"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -402637,11 +402637,11 @@ bo:27115 a sybio:FFL , owl:NamedIndividual ; rdfs:label "GO:0030163"@en , "protein degradation"@en , "pheromone catabolic process"@en , "pheromone catabolism"@en , "protein catabolic process"@en , "protein breakdown"@en , "protein catabolism"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030163"^^xsd:string ; + owl:hasValue "Protein_catabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Protein_catabolism"^^xsd:string ; + owl:hasValue "GO:0030163"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -402769,11 +402769,11 @@ bo:18994 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "LPXC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0774"^^xsd:string ; + owl:hasValue "0008759"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008759"^^xsd:string ; + owl:hasValue "COG0774"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -402799,6 +402799,8 @@ bo:2837 a sybio:InduciblePromoter , sybio:SigAPromoter , sybio:upstreamOf bo:31520 , bo:28156 ; tawny:name "2837"@en . +sybio:upstreamOf a owl:ObjectProperty . + bo:15267 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "nucleoside-triphosphate pyrophosphatase [EC:3.6.1.19]"@en ; rdfs:label "ITPA"@en ; @@ -402809,8 +402811,6 @@ bo:15267 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01519+K02428"@en ; tawny:name "15267"@en . -sybio:upstreamOf a owl:ObjectProperty . - bo:2925 a owl:NamedIndividual , sybio:SigAPromoter , sybio:RepressiblePromoter , sybio:Promoter ; rdfs:label "sigH"@en ; sybio:NA "TAGATTAAGTTGACGCTTTTTTGCCCAATACTGTATAATATTTCTATCTA"^^xsd:string ; @@ -402834,11 +402834,11 @@ bo:15355 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E3.5.4.4"@en , "ADA"@en , "ADD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004000"^^xsd:string ; + owl:hasValue "COG1816"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1816"^^xsd:string ; + owl:hasValue "0004000"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -403238,11 +403238,11 @@ bo:18957 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "methylthioadenosine methylthioribohydrolase"@en , "methylthioadenosine nucleosidase"@en , "S-methyl-5'-thioadenosine adeninehyrolase"@en , "MTA nucleosidase"@en , "GO:0008930"@en , "5'-methylthioadenosine nucleosidase"@en , "MeSAdo nucleosidase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.16"^^xsd:string ; + owl:hasValue "GO:0008930"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008930"^^xsd:string ; + owl:hasValue "3.2.2.16"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -403283,16 +403283,6 @@ bo:4495 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "gabR"@en ; tawny:name "4495"@en . -bo:16236 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]"@en ; - rdfs:label "XYLC"@en , "E1.2.1.28"@en ; - sybio:accession "COG1012"^^xsd:string , "0018479"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16235 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00141"@en ; - tawny:name "16236"@en . - bo:4583 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ydjC_terminator"@en ; sybio:NA "CGAAAGGCCAACTGCGACTTCAGTTGGCCTTTCCTATTTATAAT"^^xsd:string ; @@ -403305,13 +403295,23 @@ bo:4583 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4582 ; tawny:name "4583"@en . +bo:16236 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]"@en ; + rdfs:label "XYLC"@en , "E1.2.1.28"@en ; + sybio:accession "COG1012"^^xsd:string , "0018479"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16235 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00141"@en ; + tawny:name "16236"@en . + a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the reaction: endohydrolysis of 1,4-beta-D-xylosyl links in some glucuronoarabinoxylans."@en ; rdfs:label "glucuronoarabinoxylan 1 4-beta-D-xylanohydrolase"@en , "glucuronoxylan xylohydrolase"@en , "endoarabinoxylanase"@en , "GO:0033940"@en , "glucuronoxylanase"@en , "glucuronoxylan xylanohydrolase"@en , "feraxan endoxylanase"@en , "glucuronoarabinoxylan endo-1,4-beta-xylanase"@en , "feraxanase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.136"^^xsd:string ; + owl:hasValue "3.2.1.136-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -403319,12 +403319,20 @@ bo:4583 a sybio:Terminator , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.136-RXN"^^xsd:string ; + owl:hasValue "3.2.1.136"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4671 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yflA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31268 ; + sybio:operonGenes "yflA"@en ; + tawny:name "4671"@en . + a owl:Class ; rdfs:comment "The directed movement of glycerol-3-phosphate into, out of, within or between cells by means of some external agent such as a transporter or pore. Glycerol-3-phosphate is a phosphoric monoester of glycerol."@en ; @@ -403350,14 +403358,6 @@ bo:16324 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00502"@en ; tawny:name "16324"@en . -bo:4671 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yflA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31268 ; - sybio:operonGenes "yflA"@en ; - tawny:name "4671"@en . - bo:16412 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "quinate dehydrogenase [EC:1.1.1.24]"@en ; rdfs:label "QUIB"@en , "QA-3"@en ; @@ -403370,10 +403370,10 @@ bo:16412 a sybio:KOGE , owl:NamedIndividual ; a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring."@en ; - rdfs:label "3'-aminoglycoside acetyltransferase"@en , "acetyl-CoA:gentamicin-C N3'-acetyltransferase"@en , "gentamycin acetyltransferase I"@en , "aminoglycoside 3-N-acetyltransferase"@en , "activity"@en , "3-N-aminoglycoside acetyltransferase"@en , "gentamicin 3'-N-acetyltransferase"@en , "GO:0046353"@en , "aminoglycoside acetyltransferase"@en , "gentamicin acetyltransferase I"@en , "acetyl-CoA:2-deoxystreptamine-antibiotic N3'-acetyltransferase"@en , "gentamycin 3'-N-acetyltransferase"@en ; + rdfs:label "3'-aminoglycoside acetyltransferase"@en , "acetyl-CoA:gentamicin-C N3'-acetyltransferase"@en , "gentamycin acetyltransferase I"@en , "aminoglycoside 3-N-acetyltransferase"@en , "activity"@en , "gentamicin 3'-N-acetyltransferase"@en , "3-N-aminoglycoside acetyltransferase"@en , "GO:0046353"@en , "aminoglycoside acetyltransferase"@en , "gentamicin acetyltransferase I"@en , "acetyl-CoA:2-deoxystreptamine-antibiotic N3'-acetyltransferase"@en , "gentamycin 3'-N-acetyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GENTAMICIN-3-N-ACETYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0046353"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -403381,7 +403381,7 @@ bo:16412 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AMINOGLYCOSIDE-N3-ACETYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GENTAMICIN-3-N-ACETYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -403389,11 +403389,11 @@ bo:16412 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.81"^^xsd:string ; + owl:hasValue "AMINOGLYCOSIDE-N3-ACETYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046353"^^xsd:string ; + owl:hasValue "2.3.1.81"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -403883,7 +403883,7 @@ bo:4722 a sybio:Operon , owl:NamedIndividual ; rdfs:label "gluconate kinase"@en , "gluconokinase"@en , "GO:0046316"@en , "ATP:D-gluconate 6-phosphotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.12"^^xsd:string ; + owl:hasValue "GO:0046316"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -403891,7 +403891,7 @@ bo:4722 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0046316"^^xsd:string ; + owl:hasValue "2.7.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -404586,11 +404586,11 @@ bo:18121 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.1.1.131"@en , "CBIH"@en , "COBJ"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1010"^^xsd:string ; + owl:hasValue "0030789"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0030789"^^xsd:string ; + owl:hasValue "COG1010"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -404871,7 +404871,7 @@ bo:12571 a owl:NamedIndividual , sybio:Compound ; rdfs:label "thiamine monophosphate pyrophosphorylase"@en , "TMP diphosphorylase"@en , "thiamine-phosphate diphosphorylase"@en , "thiamine-phosphate synthase"@en , "thiamine-phosphate pyrophosphorylase"@en , "thiamin-phosphate pyrophosphorylase"@en , "2-methyl-4-aminopyrimidine-5-methenyltransferase"@en , "TMP-PPase"@en , "GO:0004789"@en , "TMP pyrophosphorylase"@en , "thiamine phosphate pyrophosphorylase"@en , "thiamin-phosphate diphosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.3"^^xsd:string ; + owl:hasValue "THI-P-SYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -404879,7 +404879,7 @@ bo:12571 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THI-P-SYN-RXN"^^xsd:string ; + owl:hasValue "2.5.1.3"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -406002,11 +406002,11 @@ bo:16789 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "NANK"@en , "E2.7.1.60"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1940"^^xsd:string ; + owl:hasValue "0009384"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009384"^^xsd:string ; + owl:hasValue "COG1940"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -406704,6 +406704,22 @@ bo:14331 a owl:NamedIndividual , sybio:Compound ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + + a owl:Class ; + rdfs:comment "The directed movement of potassium ions (K+) into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; + rdfs:label "sodium potassium transport"@en , "potassium ion transport"@en , "potassium ion conductance"@en , "potassium transport"@en , "K+ conductance"@en , "GO:0006813"@en , "low voltage-gated potassium channel auxiliary protein"@en , "low voltage-dependent potassium channel auxiliary protein"@en , "potassium conductance"@en ; + rdfs:subClassOf , sybio:BiologicalProcess , ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0015458"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0006813"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:21195 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "reversible"@en ; rdfs:label "C00131 + C00022 <=> C00206 + C00074"@en , "pyruvate 2-O-phosphotransferase"@en , "cpd:C00131 <=> cpd:C00131"@en , "dATP"@en ; @@ -406726,22 +406742,6 @@ bo:16928 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K06120+K06121+K06122"@en ; tawny:name "16928"@en . - - a owl:Class ; - rdfs:comment "The directed movement of potassium ions (K+) into, out of, within or between cells by means of some external agent such as a transporter or pore."@en ; - rdfs:label "sodium potassium transport"@en , "potassium ion transport"@en , "potassium ion conductance"@en , "potassium transport"@en , "K+ conductance"@en , "GO:0006813"@en , "low voltage-gated potassium channel auxiliary protein"@en , "low voltage-dependent potassium channel auxiliary protein"@en , "potassium conductance"@en ; - rdfs:subClassOf , sybio:BiologicalProcess , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015458"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006813"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:21283 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "3.6.1.41"@en ; @@ -406861,11 +406861,11 @@ bo:15160 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E2.1.1.95"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050342"^^xsd:string ; + owl:hasValue "COG0500"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0500"^^xsd:string ; + owl:hasValue "0050342"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -407347,11 +407347,11 @@ bo:15211 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E4.6.1.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2114"^^xsd:string ; + owl:hasValue "0004016"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004016"^^xsd:string ; + owl:hasValue "COG2114"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -408557,11 +408557,11 @@ bo:19605 a sybio:Enzyme , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.1.17-RXN"^^xsd:string ; + owl:hasValue "GO:0003941"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003941"^^xsd:string ; + owl:hasValue "4.3.1.17-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -408700,11 +408700,11 @@ bo:25903 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase"@en , "2-keto-3-deoxygluconate 5-dehydrogenase"@en , "2-keto-3-deoxygluconate dehydrogenase"@en , "2-dehydro-3-deoxy-D-gluconate:NAD+ 5-oxidoreductase"@en , "2-keto-3-deoxy-D-gluconate dehydrogenase"@en , "GO:0047001"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.127"^^xsd:string ; + owl:hasValue "1.1.1.127-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.127-RXN"^^xsd:string ; + owl:hasValue "1.1.1.127"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -408832,19 +408832,19 @@ sybio:fCDS a owl:DatatypeProperty . rdfs:label "pantothenic acid kinase"@en , "pantothenate kinase"@en , "ATP:pantothenate 4'-phosphotransferase"@en , "4'-phosphotransferase"@en , "D-pantothenate kinase"@en , "GO:0004594"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004594"^^xsd:string ; + owl:hasValue "PANTOTHENATE-KIN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12562 \"pantothenate kinase activity\""^^xsd:string ; + owl:hasValue "2.7.1.33"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PANTOTHENATE-KIN-RXN"^^xsd:string ; + owl:hasValue "12562 \"pantothenate kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.33"^^xsd:string ; + owl:hasValue "GO:0004594"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -409364,7 +409364,7 @@ bo:32818 a owl:NamedIndividual , sybio:CDS ; rdfs:label "melibiase"@en , "alpha-galactosidase A"@en , "alpha-D-galactosidase"@en , "alpha-D-galactoside galactohydrolase"@en , "GO:0004557"@en , "alpha-galactoside galactohydrolase"@en , "alpha-galactosidase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.22"^^xsd:string ; + owl:hasValue "ALPHAGALACTOSID-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -409372,7 +409372,7 @@ bo:32818 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ALPHAGALACTOSID-RXN"^^xsd:string ; + owl:hasValue "3.2.1.22"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -409410,11 +409410,11 @@ bo:32906 a owl:NamedIndividual , sybio:CDS ; rdfs:label "potato phosphorylase"@en , "starch phosphorylase"@en , "amylopectin phosphorylase"@en , "muscle phosphorylase a and b"@en , "muscle phosphorylase"@en , "amylophosphorylase"@en , "glucan phosphorylase"@en , "glucosan phosphorylase"@en , "1 4-alpha-glucan phosphorylase"@en , "phosphorylase"@en , "granulose phosphorylase"@en , "myophosphorylase"@en , "alpha-glucan phosphorylase"@en , "GO:0004645"@en , "polyphosphorylase"@en , "1 4-alpha-D-glucan:phosphate alpha-D-glucosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.1.1"^^xsd:string ; + owl:hasValue "RXN-1826"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-1826"^^xsd:string ; + owl:hasValue "2.4.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -409455,7 +409455,7 @@ bo:30009 a owl:NamedIndividual , sybio:CDS ; rdfs:label "histidyl-tRNA synthetase"@en , "GO:0004821"@en , "histidyl-transfer ribonucleate synthetase"@en , "L-histidine:tRNAHis ligase"@en , "histidine translase"@en , "histidine-tRNA ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004821"^^xsd:string ; + owl:hasValue "15098 \"histidine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -409463,7 +409463,7 @@ bo:30009 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15098 \"histidine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004821"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -409938,11 +409938,11 @@ bo:16594 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "SELA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004125"^^xsd:string ; + owl:hasValue "COG1921"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1921"^^xsd:string ; + owl:hasValue "0004125"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -410144,11 +410144,11 @@ bo:3987 a owl:NamedIndividual , sybio:PositivelyRegulated rdfs:label "GO:0005525"@en , "GTP binding"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005525"^^xsd:string ; + owl:hasValue "12514 \"GTP binding\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12514 \"GTP binding\""^^xsd:string ; + owl:hasValue "GO:0005525"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -410241,15 +410241,15 @@ bo:1266 a owl:Class ; rdfs:label "homoserine O-transsuccinylase"@en , "succinyl-CoA:L-homoserine O-succinyltransferase"@en , "GO:0008899"@en , "homoserine O-succinyltransferase"@en , "homoserine succinyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.46"^^xsd:string ; + owl:hasValue "GO:0008899"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMSUCTRAN-RXN"^^xsd:string ; + owl:hasValue "2.3.1.46"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008899"^^xsd:string ; + owl:hasValue "HOMSUCTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -410299,11 +410299,11 @@ bo:29094 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0008987"@en , "quinolinate synthetase A"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "QUINOLINATE-SYNTHA-RXN"^^xsd:string ; + owl:hasValue "GO:0008987"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008987"^^xsd:string ; + owl:hasValue "QUINOLINATE-SYNTHA-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -410448,16 +410448,28 @@ bo:16557 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00968"@en ; tawny:name "16557"@en . +bo:4992 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "rok_terminator"@en ; + sybio:NA "AAAAACTGCTTGGCATCGCTCAAGCAGTTTTTTTATTGAGGT"^^xsd:string ; + sybio:annotatedSequence "AAAAA{left}CTGCTTGGC{/left}ATC{right}GCTCAAGCAG{/right}TTTTTTTATTGAGGT"@en ; + sybio:begin "1494371"@en ; + sybio:deltaGo "-13.0"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "1494412"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4991 ; + tawny:name "4992"@en . + bo:16645 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "glutamate--cysteine ligase [EC:6.3.2.2]"@en ; rdfs:label "GSHA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004357"^^xsd:string ; + owl:hasValue "COG2918"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2918"^^xsd:string ; + owl:hasValue "0004357"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -410465,18 +410477,6 @@ bo:16645 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; tawny:name "16645"@en . -bo:4992 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "rok_terminator"@en ; - sybio:NA "AAAAACTGCTTGGCATCGCTCAAGCAGTTTTTTTATTGAGGT"^^xsd:string ; - sybio:annotatedSequence "AAAAA{left}CTGCTTGGC{/left}ATC{right}GCTCAAGCAG{/right}TTTTTTTATTGAGGT"@en ; - sybio:begin "1494371"@en ; - sybio:deltaGo "-13.0"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "1494412"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4991 ; - tawny:name "4992"@en . - bo:28228 a owl:NamedIndividual , sybio:Shim ; rdfs:label "yrvD_RBS_upstream"@en ; sybio:NA "A"^^xsd:string ; @@ -410674,11 +410674,11 @@ bo:17386 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "DLD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0277"^^xsd:string ; + owl:hasValue "0008720"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008720"^^xsd:string ; + owl:hasValue "COG0277"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -410787,17 +410787,6 @@ bo:17562 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115"@en ; tawny:name "17562"@en . -bo:1405 a owl:Class ; - rdfs:label "COG3048"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3048"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1405"@en . - bo:29145 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BG12383"@en ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -410812,6 +410801,17 @@ bo:29145 a sybio:CDS , owl:NamedIndividual ; "20.0"@en ; tawny:name "29145"@en . +bo:1405 a owl:Class ; + rdfs:label "COG3048"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG3048"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1405"@en . + bo:673 a owl:Class ; rdfs:label "COG1721"@en ; rdfs:subClassOf bo:183 , sybio:COG ; @@ -411156,11 +411156,11 @@ bo:17437 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E1.2.2.2"@en , "POXB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0028"^^xsd:string ; + owl:hasValue "0008985"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008985"^^xsd:string ; + owl:hasValue "COG0028"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -411272,11 +411272,11 @@ bo:17701 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "E3.5.99.7"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2515"^^xsd:string ; + owl:hasValue "0008660"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008660"^^xsd:string ; + owl:hasValue "COG2515"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -411786,11 +411786,11 @@ bo:19095 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "carboxy-lyase"@en , "acetolactate decarboxylase"@en , "alpha-acetolactate decarboxylase"@en , "GO:0047605"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0047605"^^xsd:string ; + owl:hasValue "ACETOLACTATE-DECARBOXYLASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETOLACTATE-DECARBOXYLASE-RXN"^^xsd:string ; + owl:hasValue "GO:0047605"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -412823,11 +412823,11 @@ bo:13860 a sybio:Compound , owl:NamedIndividual ; rdfs:label "nucleobase transmembrane transporter"@en , "GO:0015205"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015392"^^xsd:string ; + owl:hasValue "GO:0015205"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015205"^^xsd:string ; + owl:hasValue "GO:0015392"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -413061,11 +413061,11 @@ bo:25407 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "naringenin-chalcone synthase"@en , "DOCS"@en , "chalcone synthase"@en , "chalcone synthetase"@en , "malonyl-CoA:4-coumaroyl-CoA malonyltransferase"@en , "flavonone synthase"@en , "CHS"@en , "GO:0016210"@en , "flavanone synthase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NARINGENIN-CHALCONE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "2.3.1.74"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.74"^^xsd:string ; + owl:hasValue "NARINGENIN-CHALCONE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -413342,7 +413342,7 @@ bo:13911 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11499 \"isocitrate dehydrogenase (NADP+) activity\""^^xsd:string ; + owl:hasValue "1.1.1.42"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -413350,7 +413350,7 @@ bo:13911 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.42"^^xsd:string ; + owl:hasValue "11499 \"isocitrate dehydrogenase (NADP+) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -413717,11 +413717,11 @@ bo:14740 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "KGUK"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047841"^^xsd:string ; + owl:hasValue "COG0524"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0524"^^xsd:string ; + owl:hasValue "0047841"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -413762,11 +413762,11 @@ bo:27241 a sybio:FFL , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.61"^^xsd:string ; + owl:hasValue "8404 \"dihydrolipoyllysine-residue succinyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8404 \"dihydrolipoyllysine-residue succinyltransferase activity\""^^xsd:string ; + owl:hasValue "2.3.1.61"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -413823,11 +413823,11 @@ bo:21780 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10394 \"ferrochelatase activity\""^^xsd:string ; + owl:hasValue "GO:0004325"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004325"^^xsd:string ; + owl:hasValue "10394 \"ferrochelatase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -413855,7 +413855,7 @@ bo:2787 a owl:NamedIndividual , sybio:ConstitutiveSigAPro rdfs:label "HSK"@en , "GO:0004413"@en , "ATP:L-homoserine O-phosphotransferase"@en , "homoserine kinase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004413"^^xsd:string ; + owl:hasValue "2.7.1.39"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -413863,7 +413863,7 @@ bo:2787 a owl:NamedIndividual , sybio:ConstitutiveSigAPro owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.39"^^xsd:string ; + owl:hasValue "GO:0004413"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -414326,7 +414326,7 @@ bo:18995 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "glucuronate isomerase"@en , "D-glucuronate ketol-isomerase"@en , "uronic isomerase"@en , "uronic acid isomerase"@en , "D-glucuronate isomerase"@en , "GO:0008880"@en , "D-glucuronate aldose-ketose-isomerase"@en , "uronate isomerase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008880"^^xsd:string ; + owl:hasValue "5.3.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -414334,7 +414334,7 @@ bo:18995 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.3.1.12"^^xsd:string ; + owl:hasValue "GO:0008880"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -414406,15 +414406,15 @@ bo:15532 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E4.2.1.22"@en , "CBS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0031"^^xsd:string ; + owl:hasValue "COG0517"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004122"^^xsd:string ; + owl:hasValue "COG0031"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0517"^^xsd:string ; + owl:hasValue "0004122"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -414519,11 +414519,11 @@ bo:28121 a sybio:RBS , owl:NamedIndividual ; rdfs:label "sensory transduction"@en , "sensory perception stimulus detection"@en , "sensory detection of stimulus"@en , "sensory perception sensory transduction of stimulus"@en , "GO:0050906"@en , "detection of stimulus involved in sensory perception"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Transduction_(physiology)"^^xsd:string ; + owl:hasValue "GO:0050906"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050906"^^xsd:string ; + owl:hasValue "Transduction_(physiology)"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -414591,21 +414591,6 @@ bo:22572 a sybio:EC , owl:NamedIndividual , owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "22572"@en . -bo:3579 a sybio:NegativelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; - rdfs:comment "Negative"@en ; - rdfs:label "CcpA_iolB"@en ; - sybio:NA "GAAATGAAAACGTTGTCATCGTT"^^xsd:string ; - sybio:annotatedSequence "GAAA{TGAAAACGTTGTCA}TCGTT"@en ; - sybio:begin "4082181"@en ; - sybio:boundBy bo:6807 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "4082159"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:partOf bo:32686 ; - sybio:pmid "10666464"^^xsd:string ; - sybio:regulationType "Negative"^^xsd:string ; - tawny:name "3579"@en . - bo:9304 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein yxlC"@en , "BSU38690;sigma-Y antisigma factor"@en ; rdfs:label "YxlC"@en , "BSU38690"@en , "yxlC"@en ; @@ -414625,6 +414610,21 @@ bo:9304 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9304"@en . +bo:3579 a sybio:NegativelyRegulatedOperator , owl:NamedIndividual , sybio:Operator ; + rdfs:comment "Negative"@en ; + rdfs:label "CcpA_iolB"@en ; + sybio:NA "GAAATGAAAACGTTGTCATCGTT"^^xsd:string ; + sybio:annotatedSequence "GAAA{TGAAAACGTTGTCA}TCGTT"@en ; + sybio:begin "4082181"@en ; + sybio:boundBy bo:6807 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "4082159"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:partOf bo:32686 ; + sybio:pmid "10666464"^^xsd:string ; + sybio:regulationType "Negative"^^xsd:string ; + tawny:name "3579"@en . + bo:22660 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "C02222 <=> C03676"@en , "cpd:C03676 => cpd:C03676"@en ; @@ -414762,11 +414762,11 @@ bo:1034 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.3.1.28"^^xsd:string ; + owl:hasValue "GO:0008667"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008667"^^xsd:string ; + owl:hasValue "1.3.1.28"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -414811,11 +414811,11 @@ bo:18958 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "OCH1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3774"^^xsd:string ; + owl:hasValue "0000009"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0000009"^^xsd:string ; + owl:hasValue "COG3774"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -414904,50 +414904,40 @@ bo:16237 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "mitochondrial electron transport, ubiquinol to cytochrome c"@en , "complex III"@en , "GO:0006122"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "478778 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "164651 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "498544 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "459631 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "522389 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "498544 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "513290 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "GO:0006122"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "164651 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "513290 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "459631 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "437520 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "437520 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; + owl:hasValue "478778 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006122"^^xsd:string ; + owl:hasValue "522389 \"Electron transfer from ubiquinol to cytochrome c of complex III\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:16325 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "tryptophanase [EC:4.1.99.1]"@en ; - rdfs:label "TNAA"@en , "E4.1.99.1"@en ; - sybio:accession "0009034"^^xsd:string , "COG3033"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16326 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01667"@en ; - tawny:name "16325"@en . - bo:4672 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yflA_terminator"@en ; sybio:NA "ATACATGGCTTTCGGGTCGATTTTTGAGTGTAAAA"^^xsd:string ; @@ -414960,14 +414950,15 @@ bo:4672 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4671 ; tawny:name "4672"@en . -bo:16413 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "quinate dehydrogenase [EC:1.1.1.24]"@en ; - rdfs:label "QA-3"@en , "QUIB"@en ; +bo:16325 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "tryptophanase [EC:4.1.99.1]"@en ; + rdfs:label "TNAA"@en , "E4.1.99.1"@en ; + sybio:accession "0009034"^^xsd:string , "COG3033"^^xsd:string ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16412 ; + sybio:encodes bo:16326 ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09484"@en ; - tawny:name "16413"@en . + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01667"@en ; + tawny:name "16325"@en . bo:4760 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "yfhS_terminator"@en ; @@ -414981,6 +414972,15 @@ bo:4760 a owl:NamedIndividual , sybio:Terminator ; sybio:terminates bo:4759 ; tawny:name "4760"@en . +bo:16413 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "quinate dehydrogenase [EC:1.1.1.24]"@en ; + rdfs:label "QA-3"@en , "QUIB"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16412 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09484"@en ; + tawny:name "16413"@en . + bo:16501 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "taurine-pyruvate aminotransferase [EC:2.6.1.77]"@en ; rdfs:label "E2.6.1.77"@en ; @@ -415019,15 +415019,15 @@ bo:22447 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "plastoquinol:oxidized-plastocyanin oxidoreductase"@en , "cytochrome b6f"@en , "plastoquinol plastocyanin oxidoreductase"@en , "GO:0009496"@en , "plastoquinol-plastocyanin reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.10.99.1"^^xsd:string ; + owl:hasValue "GO:0009496"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN"^^xsd:string ; + owl:hasValue "1.10.99.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009496"^^xsd:string ; + owl:hasValue "PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -415602,10 +415602,10 @@ bo:2002 a sybio:Protein , owl:NamedIndividual ; a sybio:MolecularFunction , owl:NamedIndividual , owl:Class ; rdfs:comment "Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate."@en ; - rdfs:label "acylphosphatase"@en , "acylphosphate phosphohydrolase"@en , "Ho 1-3"@en , "GP 1-3"@en , "1 3-diphosphoglycerate phosphatase"@en , "acetic phosphatase"@en , "acetylphosphatase"@en , "GO:0003998"@en ; + rdfs:label "acylphosphatase"@en , "acylphosphate phosphohydrolase"@en , "Ho 1-3"@en , "1 3-diphosphoglycerate phosphatase"@en , "GP 1-3"@en , "acetic phosphatase"@en , "acetylphosphatase"@en , "GO:0003998"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACYLPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "GO:0003998"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -415613,7 +415613,7 @@ bo:2002 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003998"^^xsd:string ; + owl:hasValue "ACYLPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -415819,11 +415819,11 @@ bo:10914 a sybio:Protein , owl:NamedIndividual , bo:1665 ; rdfs:label "pentosyltransferase"@en , "GO:0016763"@en , "transferase activity, transferring pentosyl groups"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1245 \"transferase activity, transferring pentosyl groups\""^^xsd:string ; + owl:hasValue "2.4.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.-"^^xsd:string ; + owl:hasValue "1245 \"transferase activity, transferring pentosyl groups\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -416085,11 +416085,11 @@ bo:18034 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E1.12.98.1B"@en , "FRHB"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1035"^^xsd:string ; + owl:hasValue "0050454"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050454"^^xsd:string ; + owl:hasValue "COG1035"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -417639,11 +417639,11 @@ bo:16966 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "DGAT1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050252"^^xsd:string ; + owl:hasValue "0004144"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004144"^^xsd:string ; + owl:hasValue "0050252"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -417873,11 +417873,11 @@ bo:13503 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "7143 \"amino-acid N-acetyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0004042"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004042"^^xsd:string ; + owl:hasValue "7143 \"amino-acid N-acetyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -418134,11 +418134,11 @@ bo:17971 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "E1.8.98.1D"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0051912"^^xsd:string ; + owl:hasValue "COG1150"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1150"^^xsd:string ; + owl:hasValue "0051912"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -418293,11 +418293,11 @@ bo:16929 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "sodium:solute transport"@en , "sodium channel auxiliary protein"@en , "GO:0006814"@en , "sodium transport"@en , "sodium ion transport"@en , "sodium:calcium exchange"@en , "sodium potassium transport"@en , "mitochondrial sodium calcium ion exchange"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006814"^^xsd:string ; + owl:hasValue "GO:0006834"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006834"^^xsd:string ; + owl:hasValue "GO:0006814"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -418748,18 +418748,18 @@ bo:18499 a owl:NamedIndividual , sybio:KOEN , owl:Class ; a owl:Class ; rdfs:comment "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information."@en ; - rdfs:label "chromosome organization and biogenesis"@en , "chromosome organisation"@en , "GO:0051276"@en , "maintenance of genome integrity"@en , "chromosome organization"@en , "nuclear genome maintenance"@en ; + rdfs:label "chromosome organization and biogenesis"@en , "chromosome organisation"@en , "GO:0051276"@en , "chromosome organization"@en , "maintenance of genome integrity"@en , "nuclear genome maintenance"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051276"^^xsd:string ; + owl:hasValue "GO:0051277"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007001"^^xsd:string ; + owl:hasValue "GO:0051276"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051277"^^xsd:string ; + owl:hasValue "GO:0007001"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -418827,11 +418827,11 @@ bo:18763 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "FUT6"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046920"^^xsd:string ; + owl:hasValue "GT10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT10"^^xsd:string ; + owl:hasValue "0046920"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -419356,11 +419356,11 @@ bo:22039 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:label "threonine biosynthesis"@en , "threonine biosynthetic process"@en , "threonine synthesis"@en , "GO:0009088"@en , "threonine formation"@en , "threonine anabolism"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THRESYN-PWY"^^xsd:string ; + owl:hasValue "HOMOSER-THRESYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "HOMOSER-THRESYN-PWY"^^xsd:string ; + owl:hasValue "THRESYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -419826,18 +419826,6 @@ bo:32893 a sybio:CDS , owl:NamedIndividual ; sybio:url "http://www.genome.jp/dbget-bin/www_bget?bsu+bsu23610"@en ; tawny:name "32893"@en . -bo:4315 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "spoVG_terminator"@en ; - sybio:NA "AGCAAGGACTGCTGAAAGGGCTGACATAAGCCTTTTGCCGGCGGTCCTTTTTTAATTCTGAT"^^xsd:string ; - sybio:annotatedSequence "AGCAA{left}GGACTGCTGAAAGGGCT{/left}GACATA{right}AGCCTTTTGCCGGCGGTCC{/right}TTTTTTAATTCTGAT"@en ; - sybio:begin "56173"@en ; - sybio:deltaGo "-28.1"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "56234"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4314 ; - tawny:name "4315"@en . - a owl:NamedIndividual , owl:Class , sybio:MolecularFunction ; rdfs:comment "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + teichoic acid(in) = ADP + phosphate + teichoic acid(out)."@en ; @@ -419848,16 +419836,28 @@ bo:4315 a owl:NamedIndividual , sybio:Terminator ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.40-RXN"^^xsd:string ; + owl:hasValue "3.6.3.40"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.40"^^xsd:string ; + owl:hasValue "3.6.3.40-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4315 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "spoVG_terminator"@en ; + sybio:NA "AGCAAGGACTGCTGAAAGGGCTGACATAAGCCTTTTGCCGGCGGTCCTTTTTTAATTCTGAT"^^xsd:string ; + sybio:annotatedSequence "AGCAA{left}GGACTGCTGAAAGGGCT{/left}GACATA{right}AGCCTTTTGCCGGCGGTCC{/right}TTTTTTAATTCTGAT"@en ; + sybio:begin "56173"@en ; + sybio:deltaGo "-28.1"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "56234"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4314 ; + tawny:name "4315"@en . + bo:32981 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)"@en , "BSU37100;"@en ; rdfs:label "lssF"@en , "rev-4"@en , "BSU37100"@en , "murAB"@en , "murZ"@en ; @@ -420138,11 +420138,11 @@ bo:31939 a owl:NamedIndividual , sybio:CDS ; rdfs:label "DNA helicase"@en , "GO:0003678"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003679"^^xsd:string ; + owl:hasValue "GO:0003678"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003678"^^xsd:string ; + owl:hasValue "GO:0003679"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -420193,11 +420193,11 @@ bo:19606 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.38"^^xsd:string ; + owl:hasValue "GO:0003942"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003942"^^xsd:string ; + owl:hasValue "1.2.1.38"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -420381,11 +420381,11 @@ bo:32856 a owl:NamedIndividual , sybio:CDS ; rdfs:label "3'-dephospho-CoA pyrophosphorylase"@en , "pantetheine phosphate adenylyltransferase"@en , "PPAT"@en , "dephospho-CoA diphosphorylase"@en , "pantetheine-phosphate adenylyltransferase"@en , "phosphopantetheine adenylyltransferase"@en , "ATP:pantetheine-4'-phosphate adenylyltransferase"@en , "dephospho-coenzyme A pyrophosphorylase"@en , "dephospho-CoA pyrophosphorylase"@en , "ATP:pantetheine-phosphate adenylyltransferase"@en , "GO:0004595"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PANTEPADENYLYLTRAN-RXN"^^xsd:string ; + owl:hasValue "2.7.7.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004595"^^xsd:string ; + owl:hasValue "PANTEPADENYLYLTRAN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -420393,7 +420393,7 @@ bo:32856 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.3"^^xsd:string ; + owl:hasValue "GO:0004595"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -420749,19 +420749,19 @@ bo:11511 a owl:NamedIndividual , sybio:Protein , bo:693 ; rdfs:label "GO:0003905"@en , "alkylated-DNA glycohydrolase"@en , "alkylbase DNA N-glycosylase"@en , "3-methyladenine DNA glycosylase II"@en , "deoxyribonucleate 3-methyladenine glycosidase II"@en , "AlkA"@en , "DNA-3-methyladenine glycosidase II"@en , "DNA glycosidase II"@en , "DNA-3-methyladenine glycosylase II"@en , "alkylbase DNA glycosidase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.21-RXN"^^xsd:string ; + owl:hasValue "3.2.2.21"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004036"^^xsd:string ; + owl:hasValue "GO:0003905"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.2.21"^^xsd:string ; + owl:hasValue "GO:0004036"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003905"^^xsd:string ; + owl:hasValue "3.2.2.21-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -421029,19 +421029,19 @@ bo:32907 a owl:NamedIndividual , sybio:CDS ; rdfs:label "isoleucine-tRNA synthetase"@en , "GO:0004822"@en , "isoleucine-tRNA ligase"@en , "isoleucyl-tRNA synthetase"@en , "isoleucyl-transfer ribonucleate synthetase"@en , "isoleucine translase"@en , "L-isoleucine:tRNAIle ligase"@en , "isoleucyl-transfer RNA synthetase"@en , "isoleucine-transfer RNA ligase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ISOLEUCINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "6.1.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15099 \"isoleucine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004822"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004822"^^xsd:string ; + owl:hasValue "ISOLEUCINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.5"^^xsd:string ; + owl:hasValue "15099 \"isoleucine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -421181,11 +421181,11 @@ bo:14848 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E2.4.1.-"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0438"^^xsd:string ; + owl:hasValue "COG0463"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0463"^^xsd:string ; + owl:hasValue "COG0438"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -421439,11 +421439,11 @@ bo:1480 a owl:Class ; rdfs:label "phosphatidylserine decarboxylase"@en , "phosphatidyl-L-serine carboxy-lyase"@en , "GO:0004609"@en , "PS decarboxylase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004609"^^xsd:string ; + owl:hasValue "PHOSPHASERDECARB-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PHOSPHASERDECARB-RXN"^^xsd:string ; + owl:hasValue "GO:0004609"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -421458,11 +421458,11 @@ bo:15589 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "AHCY"@en , "E3.3.1.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004013"^^xsd:string ; + owl:hasValue "COG0499"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0499"^^xsd:string ; + owl:hasValue "0004013"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -421498,11 +421498,11 @@ bo:15853 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050599"^^xsd:string ; + owl:hasValue "P11935"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P11935"^^xsd:string ; + owl:hasValue "0050599"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -421565,11 +421565,11 @@ bo:16771 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.2.1.28"@en , "TREA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1626"^^xsd:string ; + owl:hasValue "0004555"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004555"^^xsd:string ; + owl:hasValue "COG1626"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -421910,7 +421910,7 @@ bo:29095 a owl:NamedIndividual , sybio:CDS ; rdfs:label "ribonucleic acid-adenine methylase"@en , "rRNA (adenine-N6-)-methyltransferase"@en , "ribosomal ribonucleate adenine 6-methyltransferase"@en , "S-adenosyl-L-methionine:rRNA"@en , "ErmC 23S rRNA methyltransferase"@en , "GO:0008988"@en , "gene ksgA methyltransferase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RRNA-ADENINE-N6--METHYLTRANSFERASE-RXN"^^xsd:string ; + owl:hasValue "GO:0008988"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -421918,7 +421918,7 @@ bo:29095 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008988"^^xsd:string ; + owl:hasValue "RRNA-ADENINE-N6--METHYLTRANSFERASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -422310,11 +422310,11 @@ bo:17299 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "B4GALT6"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT7"^^xsd:string ; + owl:hasValue "0008489"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008489"^^xsd:string ; + owl:hasValue "GT7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -422438,17 +422438,6 @@ bo:17563 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K04112+K04113+K04114+K04115"@en ; tawny:name "17563"@en . -bo:1406 a owl:Class ; - rdfs:label "COG0031"@en ; - rdfs:subClassOf bo:187 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0031"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1406"@en . - bo:29146 a owl:NamedIndividual , sybio:CDS ; rdfs:label "BSU20060"@en ; sybio:accession "BSU20060"^^xsd:string ; @@ -422464,6 +422453,17 @@ bo:29146 a owl:NamedIndividual , sybio:CDS ; "16.0"@en ; tawny:name "29146"@en . +bo:1406 a owl:Class ; + rdfs:label "COG0031"@en ; + rdfs:subClassOf bo:187 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG0031"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "1406"@en . + bo:674 a owl:Class ; rdfs:label "COG1305"@en ; rdfs:subClassOf bo:187 , sybio:COG ; @@ -422829,11 +422829,11 @@ bo:2411 a sybio:Protein , owl:NamedIndividual ; rdfs:label "chromosome transmission"@en , "GO:0007059"@en , "chromosome segregation"@en , "chromosome division"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Chromosome_segregation"^^xsd:string ; + owl:hasValue "GO:0007059"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0007059"^^xsd:string ; + owl:hasValue "Chromosome_segregation"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -423186,11 +423186,11 @@ bo:18267 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "metabolic process resulting in cell growth"@en , "GO:0008152"@en , "metabolism resulting in cell growth"@en , "metabolism"@en , "metabolic process"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008152"^^xsd:string ; + owl:hasValue "Metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Metabolism"^^xsd:string ; + owl:hasValue "GO:0008152"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -423729,7 +423729,7 @@ bo:30739 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0051007"@en , "squalene:hopene cyclase"@en , "squalene mutase"@en , "squalene-hopene cyclase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051007"^^xsd:string ; + owl:hasValue "5.4.99.17"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -423737,7 +423737,7 @@ bo:30739 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.99.17"^^xsd:string ; + owl:hasValue "GO:0051007"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -423809,11 +423809,11 @@ bo:18406 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "ASPC"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0017"^^xsd:string ; + owl:hasValue "0050560"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050560"^^xsd:string ; + owl:hasValue "COG0017"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -424271,11 +424271,11 @@ bo:10223 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043891"^^xsd:string ; + owl:hasValue "GAPDHSYNEC-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GAPDHSYNEC-RXN"^^xsd:string ; + owl:hasValue "GO:0043891"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -424778,11 +424778,11 @@ bo:5000 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "ammonia ligase"@en , "GO:0016211"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.1.-"^^xsd:string ; + owl:hasValue "GO:0016211"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016211"^^xsd:string ; + owl:hasValue "6.3.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -424938,7 +424938,7 @@ bo:13824 a owl:NamedIndividual , sybio:Compound ; rdfs:label "glutathione synthetase"@en , "glutathione synthase"@en , "GSH synthetase"@en , "gamma-L-glutamyl-L-cysteine:glycine ligase"@en , "GO:0004363"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.2.3"^^xsd:string ; + owl:hasValue "GLUTATHIONE-SYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -424946,11 +424946,11 @@ bo:13824 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10524 \"glutathione synthase activity\""^^xsd:string ; + owl:hasValue "6.3.2.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTATHIONE-SYN-RXN"^^xsd:string ; + owl:hasValue "10524 \"glutathione synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -425382,19 +425382,19 @@ bo:14653 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "synthase"@en , "phosphosulfolactate synthase"@en , "GO:0043817"@en , "sulfo-lyase"@en , "PSL synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043817"^^xsd:string ; + owl:hasValue "4.4.1.19-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.19"^^xsd:string ; + owl:hasValue "R228-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R228-RXN"^^xsd:string ; + owl:hasValue "4.4.1.19"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.19-RXN"^^xsd:string ; + owl:hasValue "GO:0043817"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -425480,15 +425480,15 @@ bo:21781 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "tetrahydrofolate:L-glutamate gamma-ligase"@en , "tetrahydrofolylpolyglutamate synthase"@en , "tetrahydrofolyl-[gamma-Glu]n:L-glutamate gamma-ligase"@en , "GO:0004326"@en , "tetrahydropteroyl-[gamma-polyglutamate]:L-glutamate gamma-ligase"@en , "formyltetrahydropteroyldiglutamate synthetase"@en , "FPGS"@en , "tetrahydrofolate synthase"@en , "folylpolyglutamate synthase"@en , "folylpoly-gamma-glutamate synthase"@en , "synthetase"@en , "synthase"@en , "folylpolyglutamyl synthetase"@en , "folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase"@en , "folate polyglutamate synthetase"@en , "folylpolyglutamate synthetase"@en , "N10-formyltetrahydropteroyldiglutamate synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10396 \"tetrahydrofolylpolyglutamate synthase activity\""^^xsd:string ; + owl:hasValue "GO:0004326"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004326"^^xsd:string ; + owl:hasValue "FOLYLPOLYGLUTAMATESYNTH-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "FOLYLPOLYGLUTAMATESYNTH-RXN"^^xsd:string ; + owl:hasValue "10396 \"tetrahydrofolylpolyglutamate synthase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -425772,11 +425772,11 @@ bo:14704 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "SDH4"@en , "SDHD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2142"^^xsd:string ; + owl:hasValue "0008177"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008177"^^xsd:string ; + owl:hasValue "COG2142"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -425945,11 +425945,11 @@ bo:18996 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "GO:0008881"@en , "glutamate racemase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008881"^^xsd:string ; + owl:hasValue "5.1.1.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.1.1.3"^^xsd:string ; + owl:hasValue "GO:0008881"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -426340,11 +426340,11 @@ bo:1035 a owl:Class ; rdfs:label "GO:0008668"@en , "2 3-dihydroxybenzoate-AMP ligase"@en , "ATP:2 3-dihydroxybenzoate adenylyltransferase"@en , "(2,3-dihydroxybenzoyl)adenylate synthase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008668"^^xsd:string ; + owl:hasValue "DHBAMPLIG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DHBAMPLIG-RXN"^^xsd:string ; + owl:hasValue "GO:0008668"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -426393,7 +426393,7 @@ bo:1123 a owl:Class ; rdfs:label "2-succinylbenzoate:CoA ligase"@en , "o-succinylbenzoyl-CoA synthetase"@en , "o-succinylbenzoate-CoA ligase"@en , "GO:0008756"@en , "o-succinylbenzoate:CoA ligase"@en , "OSB-CoA synthetase"@en , "osb-CoA synthetase"@en , "o-succinylbenzoyl-coenzyme A synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008756"^^xsd:string ; + owl:hasValue "6.2.1.26"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -426401,7 +426401,7 @@ bo:1123 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.2.1.26"^^xsd:string ; + owl:hasValue "GO:0008756"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -426496,11 +426496,11 @@ bo:16238 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "GO:0006123"@en , "mitochondrial electron transport, cytochrome c to oxygen"@en , "complex IV"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "478751 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; + owl:hasValue "437492 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "437492 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; + owl:hasValue "GO:0006123"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -426508,16 +426508,24 @@ bo:16238 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006123"^^xsd:string ; + owl:hasValue "163214 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "163214 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; + owl:hasValue "478751 \"Electron transfer from reduced cytochrome c to molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4673 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "trePAR"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28608 , bo:28609 , bo:31131 ; + sybio:operonGenes "treP,treA,treR"@en ; + tawny:name "4673"@en . + bo:16326 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "tryptophanase [EC:4.1.99.1]"@en ; rdfs:label "E4.1.99.1"@en , "TNAA"@en ; @@ -426528,13 +426536,13 @@ bo:16326 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01667"@en ; tawny:name "16326"@en . -bo:4673 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "trePAR"@en ; +bo:4761 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "perR"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28608 , bo:28609 , bo:31131 ; - sybio:operonGenes "treP,treA,treR"@en ; - tawny:name "4673"@en . + sybio:hasPart bo:31221 ; + sybio:operonGenes "perR"@en ; + tawny:name "4761"@en . bo:16414 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:comment "quinate dehydrogenase [EC:1.1.1.24]"@en ; @@ -426545,14 +426553,6 @@ bo:16414 a owl:Class , sybio:KOEN , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K09484"@en ; tawny:name "16414"@en . -bo:4761 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "perR"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31221 ; - sybio:operonGenes "perR"@en ; - tawny:name "4761"@en . - bo:16502 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]"@en ; rdfs:label "E2.3.3.15"@en ; @@ -427007,11 +427007,11 @@ bo:23541 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.179-RXN"^^xsd:string ; + owl:hasValue "GO:0033817"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0033817"^^xsd:string ; + owl:hasValue "2.3.1.179-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -427173,11 +427173,11 @@ bo:18160 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "BTUR"@en , "E2.5.1.17"@en , "COBO"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008817"^^xsd:string ; + owl:hasValue "COG2109"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2109"^^xsd:string ; + owl:hasValue "0008817"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -427219,7 +427219,7 @@ bo:2003 a sybio:Protein , owl:NamedIndividual ; rdfs:label "AMP:diphosphate phospho-D-ribosyltransferase"@en , "APRT"@en , "AMP pyrophosphorylase"@en , "adenylic pyrophosphorylase"@en , "adenosine phosphoribosyltransferase"@en , "adenine phosphoribosyltransferase"@en , "transphosphoribosidase"@en , "adenylate pyrophosphorylase"@en , "AMP diphosphorylase"@en , "adenine phosphoribosylpyrophosphate transferase"@en , "GO:0003999"@en , "AMP-pyrophosphate phosphoribosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.4.2.7"^^xsd:string ; + owl:hasValue "GO:0003999"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -427231,7 +427231,7 @@ bo:2003 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003999"^^xsd:string ; + owl:hasValue "2.4.2.7"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -427744,11 +427744,11 @@ bo:18211 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "MVAK1"@en , "MVK"@en , "E2.7.1.36"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004496"^^xsd:string ; + owl:hasValue "COG1577"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1577"^^xsd:string ; + owl:hasValue "0004496"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -428326,11 +428326,11 @@ bo:9895 a owl:NamedIndividual , sybio:Protein ; rdfs:label "defense response to bacteria"@en , "defense response to bacterium"@en , "defence response to bacteria"@en , "antibacterial peptide"@en , "defence response to bacterium"@en , "GO:0042742"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042830"^^xsd:string ; + owl:hasValue "GO:0042742"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042742"^^xsd:string ; + owl:hasValue "GO:0042830"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -429238,7 +429238,7 @@ bo:16879 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CHS1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT2"^^xsd:string ; + owl:hasValue "COG1215"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -429246,7 +429246,7 @@ bo:16879 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1215"^^xsd:string ; + owl:hasValue "GT2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -430433,11 +430433,11 @@ bo:15301 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E3.1.3.5"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0737"^^xsd:string ; + owl:hasValue "0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008253"^^xsd:string ; + owl:hasValue "COG0737"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -430730,11 +430730,11 @@ bo:18727 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "B3GALT5"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "0008499"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008499"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -430768,7 +430768,7 @@ bo:18815 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "2-keto-4-hydroxyglutaric aldolase"@en , "4-hydroxy-2-oxoglutarate aldolase"@en , "4-hydroxy-2-ketoglutaric aldolase"@en , "2-keto-4-hydroxyglutarate aldolase"@en , "hydroxyketoglutaric aldolase"@en , "KHG-aldolase"@en , "2-keto-4-hydroxybutyrate aldolase"@en , "4-hydroxy-2-ketoglutarate aldolase"@en , "DL-4-hydroxy-2-ketoglutarate aldolase"@en , "4-hydroxy-2-oxoglutarate glyoxylate-lyase"@en , "GO:0008700"@en , "2-oxo-4-hydroxyglutarate aldolase"@en , "hydroxyketoglutarate aldolase"@en , "2-oxo-4-hydroxyglutaric aldolase"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008700"^^xsd:string ; + owl:hasValue "4OH2OXOGLUTARALDOL-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -430776,7 +430776,7 @@ bo:18815 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4OH2OXOGLUTARALDOL-RXN"^^xsd:string ; + owl:hasValue "GO:0008700"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -431596,11 +431596,11 @@ bo:30261 a owl:NamedIndividual , sybio:CDS ; rdfs:label "thiamin formation"@en , "GO:0009228"@en , "vitamin B1 biosynthetic process"@en , "thiamine biosynthetic process"@en , "thiamine biosynthesis"@en , "vitamin B1 biosynthesis"@en , "thiamin biosynthesis"@en , "thiamin biosynthetic process"@en , "thiamin synthesis"@en , "thiamin anabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THISYN-PWY"^^xsd:string ; + owl:hasValue "GO:0009228"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009228"^^xsd:string ; + owl:hasValue "THISYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -431834,11 +431834,11 @@ bo:5321 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "GO:0016620"@en , "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016620"^^xsd:string ; + owl:hasValue "1.2.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.-"^^xsd:string ; + owl:hasValue "GO:0016620"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -432327,15 +432327,15 @@ bo:11600 a sybio:Pathway , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0003906"@en , "micrococcus luteus UV endonuclease"@en , "AP lyase"@en , "AP site-DNA 5'-phosphomonoester-lyase"@en , "Phage-T4 UV endonuclease"@en , "phage-T4 UV endonuclease"@en , "5'-phosphomonoester-lyase"@en , "endonuclease VIII"@en , "AP endonuclease class I"@en , "DNA-(apurinic or apyrimidinic site) lyase"@en , "endodeoxyribonuclease"@en , "UV endonuclease"@en , "X-ray endonuclease III"@en , "deoxyribonuclease"@en , "Micrococcus luteus UV endonuclease"@en , "E. coli endonuclease III"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12450 \"DNA-(apurinic or apyrimidinic site) lyase activity\""^^xsd:string ; + owl:hasValue "4.2.99.18-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.99.18"^^xsd:string ; + owl:hasValue "12450 \"DNA-(apurinic or apyrimidinic site) lyase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.2.99.18-RXN"^^xsd:string ; + owl:hasValue "4.2.99.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -432420,11 +432420,11 @@ bo:14974 a owl:Class , owl:NamedIndividual , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016407"^^xsd:string ; + owl:hasValue "1621 \"acetyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1621 \"acetyltransferase activity\""^^xsd:string ; + owl:hasValue "GO:0016407"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -432594,11 +432594,11 @@ bo:32908 a sybio:CDS , owl:NamedIndividual ; rdfs:label "O-phosphoserine phosphohydrolase"@en , "GO:0004647"@en , "phosphoserine phosphatase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004647"^^xsd:string ; + owl:hasValue "3.1.3.3"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.3"^^xsd:string ; + owl:hasValue "GO:0004647"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -432614,15 +432614,15 @@ bo:32908 a sybio:CDS , owl:NamedIndividual ; rdfs:label "GO:0004735"@en , "NADPH-L-delta1-pyrroline carboxylic acid reductase"@en , "5-oxidoreductase"@en , "P5CR"@en , "1-pyrroline-5-carboxylate reductase"@en , "L-proline oxidase"@en , "pyrroline-5-carboxylate reductase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004735"^^xsd:string ; + owl:hasValue "14208 \"pyrroline-5-carboxylate reductase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14208 \"pyrroline-5-carboxylate reductase activity\""^^xsd:string ; + owl:hasValue "PYRROLINECARBREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PYRROLINECARBREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0004735"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -432642,15 +432642,15 @@ bo:32908 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.4"^^xsd:string ; + owl:hasValue "GO:0004823"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15100 \"leucine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "6.1.1.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004823"^^xsd:string ; + owl:hasValue "15100 \"leucine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -432716,39 +432716,39 @@ bo:6201 a sybio:Operon , owl:NamedIndividual ; rdfs:label "lipoprotein synthesis"@en , "lipoprotein formation"@en , "GO:0042158"@en , "lipoprotein anabolism"@en , "lipoprotein biosynthetic process"@en , "lipoprotein biosynthesis"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "453778 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; + owl:hasValue "442768 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "431225 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; + owl:hasValue "503010 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "492474 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; + owl:hasValue "453778 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "174587 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; + owl:hasValue "174741 \"ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "174786 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; + owl:hasValue "431225 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "510407 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; + owl:hasValue "492474 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "431239 \"ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron\""^^xsd:string ; + owl:hasValue "174786 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "482858 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; + owl:hasValue "174587 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "442768 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; + owl:hasValue "510407 \"ApoB-48 + 40 triacylglycerol + 60 phospholipid => ApoB-48:TG:PL complex\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -432756,15 +432756,15 @@ bo:6201 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "503010 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; + owl:hasValue "GO:0042158"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042158"^^xsd:string ; + owl:hasValue "431239 \"ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "174741 \"ApoB-48:TG:PL complex + 100 triacylglycerols + ApoA-I + ApoA-IV => nascent chylomicron\""^^xsd:string ; + owl:hasValue "482858 \"nascent chylomicron [endoplasmic reticulum lumen] => nascent chylomicron [extracellular]\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -432861,26 +432861,6 @@ bo:14849 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00976"@en ; tawny:name "14849"@en . - - a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; - rdfs:comment "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans)."@en ; - rdfs:label "calcium-translocating P-type ATPase"@en , "Ca2+-pumping ATPase"@en , "GO:0005388"@en , "ATPase"@en , "calcium ABC transporter"@en , "calcium transporting ATPase"@en , "plasma membrane Ca-ATPase"@en , "calcium efflux ATPase"@en , "reticulum Ca2+-ATPase"@en , "calcium pump"@en , "calcium-transporting ATPase"@en , "ATP phosphohydrolase"@en , "Ca2+-transporting ATPase"@en , "sarcoplasmic reticulum ATPase"@en ; - rdfs:subClassOf , sybio:MolecularFunction ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005388"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.8"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.8-RXN"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . - bo:9575 a bo:470 , owl:NamedIndividual , bo:507 , bo:799 , sybio:Protein ; rdfs:comment "BSU23970;High affinity arginine ABC transporter (permease)"@en , "Arginine transport system permease protein artQ"@en ; rdfs:label "artQ"@en , "YqiY"@en , "BSU23970"@en , "ArtQ"@en ; @@ -432901,6 +432881,26 @@ bo:9575 a bo:470 , owl:NamedIndividual , bo:507 , bo:799 sybio:taxId "[224308, 1423]"@en ; tawny:name "9575"@en . + + a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; + rdfs:comment "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans)."@en ; + rdfs:label "calcium-translocating P-type ATPase"@en , "Ca2+-pumping ATPase"@en , "GO:0005388"@en , "ATPase"@en , "calcium ABC transporter"@en , "plasma membrane Ca-ATPase"@en , "calcium transporting ATPase"@en , "calcium efflux ATPase"@en , "reticulum Ca2+-ATPase"@en , "calcium pump"@en , "calcium-transporting ATPase"@en , "ATP phosphohydrolase"@en , "Ca2+-transporting ATPase"@en , "sarcoplasmic reticulum ATPase"@en ; + rdfs:subClassOf , sybio:MolecularFunction ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.6.3.8-RXN"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.6.3.8"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0005388"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . + bo:14937 a owl:NamedIndividual , sybio:KOPR ; rdfs:comment "PTS system, galactitol-specific IIC component"@en ; rdfs:label "PTS-GAT-EIIC"@en , "GATC"@en ; @@ -433709,16 +433709,6 @@ bo:16559 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00993"@en ; tawny:name "16559"@en . -bo:16647 a sybio:KOPR , owl:NamedIndividual ; - rdfs:comment "glutamate--cysteine ligase catalytic subunit [EC:6.3.2.2]"@en ; - rdfs:label "GCLC"@en ; - sybio:accession "0004357"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:16646 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; - tawny:name "16647"@en . - bo:4994 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "yknT_terminator"@en ; sybio:NA "AAAAACTGCTTGAGCGATGCCAAGCAGTTTTTCTTTATATTT"^^xsd:string ; @@ -433731,16 +433721,26 @@ bo:4994 a sybio:Terminator , owl:NamedIndividual ; sybio:terminates bo:4993 ; tawny:name "4994"@en . +bo:16647 a sybio:KOPR , owl:NamedIndividual ; + rdfs:comment "glutamate--cysteine ligase catalytic subunit [EC:6.3.2.2]"@en ; + rdfs:label "GCLC"@en ; + sybio:accession "0004357"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:16646 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; + tawny:name "16647"@en . + bo:16735 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:comment "maltase-glucoamylase [EC:3.2.1.20 3.2.1.3]"@en ; rdfs:label "MGAM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004558"^^xsd:string ; + owl:hasValue "0004339"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004339"^^xsd:string ; + owl:hasValue "0004558"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -434530,11 +434530,11 @@ bo:17527 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "FHS"@en , "E6.3.4.3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2759"^^xsd:string ; + owl:hasValue "0004329"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004329"^^xsd:string ; + owl:hasValue "COG2759"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -435846,15 +435846,15 @@ bo:10224 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RXN-8636"^^xsd:string ; + owl:hasValue "1.1.1.283-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.283-RXN"^^xsd:string ; + owl:hasValue "1.1.1.283"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.283"^^xsd:string ; + owl:hasValue "RXN-8636"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -436597,11 +436597,11 @@ bo:13913 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "IPPISOM-RXN"^^xsd:string ; + owl:hasValue "GO:0004452"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004452"^^xsd:string ; + owl:hasValue "IPPISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -437507,11 +437507,11 @@ bo:18997 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "B3GALT6"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT31"^^xsd:string ; + owl:hasValue "0047220"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047220"^^xsd:string ; + owl:hasValue "GT31"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -437586,11 +437586,11 @@ bo:15622 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "E2.5.1.49"@en , "METY"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003961"^^xsd:string ; + owl:hasValue "COG2873"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2873"^^xsd:string ; + owl:hasValue "0003961"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -438030,11 +438030,11 @@ bo:15409 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "UDP"@en , "E2.4.2.3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004850"^^xsd:string ; + owl:hasValue "COG2820"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2820"^^xsd:string ; + owl:hasValue "0004850"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -438083,16 +438083,28 @@ bo:4586 a sybio:Operon , owl:NamedIndividual ; sybio:operonGenes "gutB,gutP"@en ; tawny:name "4586"@en . +bo:4674 a owl:NamedIndividual , sybio:Terminator ; + rdfs:label "trePAR_terminator"@en ; + sybio:NA "GAGAGGCGCCTGCCTGCGGCAGCGCGCTTTTTTGTTTGGTAT"^^xsd:string ; + sybio:annotatedSequence "GAGAG{left}GCGCCTGCC{/left}TGC{right}GGCAGCGCGC{/right}TTTTTTGTTTGGTAT"@en ; + sybio:begin "854273"@en ; + sybio:deltaGo "-16.8"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "854314"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:terminates bo:4673 ; + tawny:name "4674"@en . + bo:16327 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "tryptophanase [EC:4.1.99.1]"@en ; rdfs:label "E4.1.99.1"@en , "TNAA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3033"^^xsd:string ; + owl:hasValue "0009034"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009034"^^xsd:string ; + owl:hasValue "COG3033"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -438100,17 +438112,17 @@ bo:16327 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01667"@en ; tawny:name "16327"@en . -bo:4674 a owl:NamedIndividual , sybio:Terminator ; - rdfs:label "trePAR_terminator"@en ; - sybio:NA "GAGAGGCGCCTGCCTGCGGCAGCGCGCTTTTTTGTTTGGTAT"^^xsd:string ; - sybio:annotatedSequence "GAGAG{left}GCGCCTGCC{/left}TGC{right}GGCAGCGCGC{/right}TTTTTTGTTTGGTAT"@en ; - sybio:begin "854273"@en ; - sybio:deltaGo "-16.8"@en ; +bo:4762 a sybio:Terminator , owl:NamedIndividual ; + rdfs:label "perR_terminator"@en ; + sybio:NA "AAAAATAAGCTGACCGCACGAAACGGTCAGCTTATTTTATTTCGACATT"^^xsd:string ; + sybio:annotatedSequence "AAAAA{left}TAAGCTGACCG{/left}CACGAAA{right}CGGTCAGCTTA{/right}TTTTATTTCGACATT"@en ; + sybio:begin "944923"@en ; + sybio:deltaGo "-19.8"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "854314"@en ; + sybio:end "944971"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4673 ; - tawny:name "4674"@en . + sybio:terminates bo:4761 ; + tawny:name "4762"@en . bo:16415 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid synthase[EC:4.1.2.-]"@en ; @@ -438122,18 +438134,6 @@ bo:16415 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11645"@en ; tawny:name "16415"@en . -bo:4762 a sybio:Terminator , owl:NamedIndividual ; - rdfs:label "perR_terminator"@en ; - sybio:NA "AAAAATAAGCTGACCGCACGAAACGGTCAGCTTATTTTATTTCGACATT"^^xsd:string ; - sybio:annotatedSequence "AAAAA{left}TAAGCTGACCG{/left}CACGAAA{right}CGGTCAGCTTA{/right}TTTTATTTCGACATT"@en ; - sybio:begin "944923"@en ; - sybio:deltaGo "-19.8"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "944971"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:terminates bo:4761 ; - tawny:name "4762"@en . - bo:16503 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]"@en ; rdfs:label "E2.3.3.15"@en ; @@ -438560,7 +438560,7 @@ bo:23542 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:label "acetyl-CoA:malonyl-acyl-carrier-protein C-acyltransferase"@en , "KAS III"@en , "KASIII"@en , "FabH"@en , "3-ketoacyl-acyl carrier protein synthase III"@en , "beta-ketoacyl-ACP synthase III"@en , "beta-ketoacyl-acyl-carrier-protein synthase III"@en , "beta-ketoacyl-acyl carrier protein synthase III"@en , "beta-ketoacyl synthase III"@en , "3-oxoacyl:ACP synthase III"@en , "GO:0033818"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.3.1.180"^^xsd:string ; + owl:hasValue "GO:0033818"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -438568,7 +438568,7 @@ bo:23542 a owl:Class , owl:NamedIndividual , sybio:EC ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0033818"^^xsd:string ; + owl:hasValue "2.3.1.180"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -438679,11 +438679,11 @@ bo:18073 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "COBV"@en , "E2.7.8.26"@en , "COBS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008818"^^xsd:string ; + owl:hasValue "COG0368"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0368"^^xsd:string ; + owl:hasValue "0008818"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -438942,11 +438942,11 @@ bo:10916 a bo:462 , owl:NamedIndividual , sybio:Protein , owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016765"^^xsd:string ; + owl:hasValue "2.5.-.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.-.-"^^xsd:string ; + owl:hasValue "GO:0016765"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -440253,79 +440253,79 @@ bo:32078 a sybio:CDS , owl:NamedIndividual ; rdfs:label "retrograde transport Golgi to ER"@en , "GO:0006890"@en , "retrograde transport"@en , "retrograde transport Golgi to endoplasmic reticulum"@en , "retrograde vesicle-mediated transport, Golgi to ER"@en , "retrograde vesicle-mediated transport Golgi to endoplasmic reticulum"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585897 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "517560 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542338 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "507592 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507592 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "581697 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517560 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "542338 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581697 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "526426 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531243 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "547679 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536614 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "199983 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487633 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "552341 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592604 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "GO:0006890"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547679 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "487633 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526426 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "531243 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448814 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "536614 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557888 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "568486 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469930 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "595453 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006890"^^xsd:string ; + owl:hasValue "585897 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "199983 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "469930 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552341 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "557888 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568486 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "448814 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595453 \"Golgi to ER Retrograde Transport\""^^xsd:string ; + owl:hasValue "592604 \"Golgi to ER Retrograde Transport\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -440553,7 +440553,7 @@ bo:13542 a owl:NamedIndividual , sybio:Compound ; rdfs:label "hydrolase"@en , "diguanosinetetraphosphatase"@en , "diadenosine 5' 5'''-P1 P4-tetraphosphate hydrolase"@en , "dinucleosidetetraphosphatase"@en , "GO:0004081"@en , "diadenosine 5' asymmetrical hydrolase"@en , "Ap4Aase"@en , "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)"@en , "diadenosinetetraphosphatase"@en , "Ap4A hydrolase"@en , "diadenosine P1 P4-tetraphosphatase"@en , "activity"@en , "dinucleoside tetraphosphatase"@en , "P1 nucleotidohydrolase"@en , "1-P nucleotidohydrolase"@en , "diadenosine 5' 5'''-P1 P4-tetraphosphate asymmetrical hydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.17"^^xsd:string ; + owl:hasValue "3.6.1.17-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -440561,7 +440561,7 @@ bo:13542 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.17-RXN"^^xsd:string ; + owl:hasValue "3.6.1.17"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -441103,10 +441103,6 @@ bo:13505 a owl:NamedIndividual , sybio:Compound ; rdfs:comment "Catalysis of the reaction: 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O."@en ; rdfs:label "glutamine phosphoribosyldiphosphate amidotransferase"@en , "GO:0004044"@en , "5'-phosphoribosylpyrophosphate amidotransferase"@en , "phosphoribosyl pyrophosphate amidotransferase"@en , "phosphoribose pyrophosphate amidotransferase"@en , "glutamine ribosylpyrophosphate 5-phosphate amidotransferase"@en , "phosphoribosyldiphosphate 5-amidotransferase"@en , "glutamine 5-phosphoribosylpyrophosphate amidotransferase"@en , "5-phosphororibosyl-1-pyrophosphate amidotransferase"@en , "5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase"@en , "phosphoribosylpyrophosphate glutamyl amidotransferase"@en , "alpha-5-phosphoribosyl-1-pyrophosphate amidotransferase"@en , "5-phosphoribosyl-1-pyrophosphate amidotransferase"@en , "glutamine phosphoribosylpyrophosphate amidotransferase"@en , "amidophosphoribosyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004044"^^xsd:string ; - owl:onProperty sybio:accession - ] ; rdfs:subClassOf [ a owl:Restriction ; owl:hasValue "2.4.2.14"^^xsd:string ; owl:onProperty sybio:accession @@ -441119,6 +441115,10 @@ bo:13505 a owl:NamedIndividual , sybio:Compound ; owl:hasValue "PRPPAMIDOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "GO:0004044"^^xsd:string ; + owl:onProperty sybio:accession + ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . @@ -442451,6 +442451,16 @@ bo:18728 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03877+K07819+K07820"@en ; tawny:name "18728"@en . +bo:18816 a owl:NamedIndividual , sybio:KOPR ; + rdfs:comment "3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]"@en ; + rdfs:label "UBID"@en ; + sybio:accession "0008694"^^xsd:string , "COG0043"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodedBy bo:18815 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03182+K06186"@en ; + tawny:name "18816"@en . + bo:23083 a owl:NamedIndividual , owl:Class , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.4.1.63"@en ; @@ -442463,16 +442473,6 @@ bo:23083 a owl:NamedIndividual , owl:Class , sybio:EC ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "23083"@en . -bo:18816 a owl:NamedIndividual , sybio:KOPR ; - rdfs:comment "3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]"@en ; - rdfs:label "UBID"@en ; - sybio:accession "0008694"^^xsd:string , "COG0043"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodedBy bo:18815 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03182+K06186"@en ; - tawny:name "18816"@en . - bo:23171 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; rdfs:label "glutathione-disulfide oxidoreductase"@en , "cpd:C00127 <=> cpd:C00127"@en , "coenzyme A"@en , "C00010 + C00127 <=> C00920 + C00051"@en ; @@ -442671,11 +442671,11 @@ bo:16006 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "PUUD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2071"^^xsd:string ; + owl:hasValue "0033969"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0033969"^^xsd:string ; + owl:hasValue "COG2071"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -443338,11 +443338,11 @@ bo:19608 a owl:NamedIndividual , sybio:Enzyme ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-DEHYDROQUINATE-SYNTHASE-RXN"^^xsd:string ; + owl:hasValue "GO:0003856"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003856"^^xsd:string ; + owl:hasValue "3-DEHYDROQUINATE-SYNTHASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -444143,19 +444143,19 @@ bo:32909 a owl:NamedIndividual , sybio:CDS ; rdfs:label "phosphohydroxypyruvic--glutamic transaminase"@en , "hydroxypyruvic phosphate--glutamic transaminase"@en , "3-O-phospho-L-serine:2-oxoglutarate aminotransferase"@en , "3-phosphoserine aminotransferase"@en , "phosphoserine transaminase"@en , "phosphohydroxypyruvate transaminase"@en , "L-phosphoserine aminotransferase"@en , "3PHP transaminase"@en , "phosphoserine aminotransferase"@en , "PdxC"@en , "GO:0004648"@en , "PSAT"@en , "SerC"@en , "O-phospho-L-serine:2-oxoglutarate aminotransferase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PSERTRANSAM-RXN"^^xsd:string ; + owl:hasValue "GO:0004646"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004648"^^xsd:string ; + owl:hasValue "2.6.1.52"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.6.1.52"^^xsd:string ; + owl:hasValue "GO:0004648"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004646"^^xsd:string ; + owl:hasValue "PSERTRANSAM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -444167,11 +444167,11 @@ bo:32909 a owl:NamedIndividual , sybio:CDS ; rdfs:label "GO:0004736"@en , "pyruvate carboxylase"@en , "pyruvate:carbon-dioxide ligase"@en , "pyruvic carboxylase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004736"^^xsd:string ; + owl:hasValue "14209 \"pyruvate carboxylase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.4.1.1"^^xsd:string ; + owl:hasValue "GO:0004736"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -444179,7 +444179,7 @@ bo:32909 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14209 \"pyruvate carboxylase activity\""^^xsd:string ; + owl:hasValue "6.4.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -444191,19 +444191,19 @@ bo:32909 a owl:NamedIndividual , sybio:CDS ; rdfs:label "lysyl-tRNA synthetase"@en , "lysyl-transfer RNA synthetase"@en , "L-lysine-transfer RNA ligase"@en , "L-lysine:tRNALys ligase"@en , "GO:0004824"@en , "lysine-tRNA synthetase"@en , "lysine translase"@en , "lysyl-transfer ribonucleate synthetase"@en , "lysine-tRNA ligase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.6"^^xsd:string ; + owl:hasValue "15101 \"lysine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "LYSINE--TRNA-LIGASE-RXN"^^xsd:string ; + owl:hasValue "GO:0004824"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004824"^^xsd:string ; + owl:hasValue "6.1.1.6"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15101 \"lysine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "LYSINE--TRNA-LIGASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -444594,11 +444594,11 @@ bo:15679 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E5.4.99.2A"@en , "MCMA1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1884"^^xsd:string ; + owl:hasValue "0004494"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004494"^^xsd:string ; + owl:hasValue "COG1884"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -445221,6 +445221,14 @@ bo:15906 a owl:NamedIndividual , sybio:KOPR ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K10793+K10794+K10795+K10796"@en ; tawny:name "15906"@en . +bo:4995 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "yknWXYZ"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31128 , bo:31129 , bo:31395 , bo:31130 ; + sybio:operonGenes "yknW,yknX,yknY,yknZ"@en ; + tawny:name "4995"@en . + bo:16648 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:comment "glutamate--cysteine ligase catalytic subunit [EC:6.3.2.2]"@en ; rdfs:label "GCLC"@en ; @@ -445234,14 +445242,6 @@ bo:16648 a sybio:KOEN , owl:Class , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01919+K11204+K11205"@en ; tawny:name "16648"@en . -bo:4995 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "yknWXYZ"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31128 , bo:31129 , bo:31395 , bo:31130 ; - sybio:operonGenes "yknW,yknX,yknY,yknZ"@en ; - tawny:name "4995"@en . - bo:16736 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "glucan 1,3-beta-glucosidase [EC:3.2.1.58]"@en ; rdfs:label "E3.2.1.58"@en ; @@ -445338,11 +445338,11 @@ bo:16912 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "MURM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047206"^^xsd:string ; + owl:hasValue "COG2348"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2348"^^xsd:string ; + owl:hasValue "0047206"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -447845,11 +447845,11 @@ bo:1998 a sybio:Protein , owl:NamedIndividual ; rdfs:label "S-ribosylhomocysteinase"@en , "homocysteine-lyase 5-dihydroxypentan-2 3-dione-forming]"@en , "ribosylhomocysteinase"@en , "S-ribosylhomocysteine lyase"@en , "GO:0043768"@en , "LuxS"@en , "3.2.1.148"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.4.1.21"^^xsd:string ; + owl:hasValue "GO:0043768"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0043768"^^xsd:string ; + owl:hasValue "GO:0019138"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -447857,7 +447857,7 @@ bo:1998 a sybio:Protein , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019138"^^xsd:string ; + owl:hasValue "4.4.1.21"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -447908,11 +447908,11 @@ bo:5002 a owl:NamedIndividual , sybio:Terminator ; rdfs:label "kinase"@en , "phosphokinase"@en , "GO:0016301"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1423 \"kinase activity\""^^xsd:string ; + owl:hasValue "GO:0016301"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016301"^^xsd:string ; + owl:hasValue "1423 \"kinase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -448011,19 +448011,19 @@ bo:13826 a owl:NamedIndividual , sybio:Compound ; rdfs:label "dehydrogenase glyceraldehyde phosphate"@en , "GO:0004365"@en , "NAD-dependent glyceraldehyde-3-phosphate dehydrogenase"@en , "D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase"@en , "glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)"@en , "glyceraldehyde phosphate dehydrogenase"@en , "glyceraldehyde-3-P-dehydrogenase"@en , "triosephosphate dehydrogenase"@en , "phosphoglyceraldehyde dehydrogenase"@en , "NADH-glyceraldehyde phosphate dehydrogenase"@en , "NAD-dependent glyceraldehyde phosphate dehydrogenase"@en , "3-phosphoglyceraldehyde dehydrogenase"@en , "GAPDH"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "10530 \"glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity\""^^xsd:string ; + owl:hasValue "GO:0004365"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.2.1.12"^^xsd:string ; + owl:hasValue "GAPOXNPHOSPHN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GAPOXNPHOSPHN-RXN"^^xsd:string ; + owl:hasValue "10530 \"glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004365"^^xsd:string ; + owl:hasValue "1.2.1.12"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -448548,11 +448548,11 @@ bo:15484 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E5.1.1.13"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1794"^^xsd:string ; + owl:hasValue "0047689"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0047689"^^xsd:string ; + owl:hasValue "COG1794"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -448872,14 +448872,14 @@ bo:1162 a owl:Class ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+."@en ; - rdfs:label "nicotinamide adenine dinucleotide synthetase"@en , "NAD synthase"@en , "diphosphopyridine nucleotide synthetase"@en , "synthetase"@en , "NAD+ synthetase"@en , "deamido-NAD+:ammonia ligase"@en , "GO:0008795"@en , "NAD+ synthase"@en , "NAD synthetase"@en ; + rdfs:label "nicotinamide adenine dinucleotide synthetase"@en , "NAD synthase"@en , "diphosphopyridine nucleotide synthetase"@en , "NAD+ synthetase"@en , "synthetase"@en , "deamido-NAD+:ammonia ligase"@en , "GO:0008795"@en , "NAD+ synthase"@en , "NAD synthetase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "NAD-SYNTH-NH3-RXN"^^xsd:string ; + owl:hasValue "6.3.1.5"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.3.1.5"^^xsd:string ; + owl:hasValue "GO:0008749"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -448887,11 +448887,11 @@ bo:1162 a owl:Class ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016965"^^xsd:string ; + owl:hasValue "NAD-SYNTH-NH3-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008749"^^xsd:string ; + owl:hasValue "GO:0016965"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -448936,11 +448936,11 @@ bo:1250 a owl:Class ; rdfs:label "GO:0008883"@en , "L-glutamate-semialdehyde: NADP+ oxidoreductase"@en , "glutamyl-tRNA reductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008883"^^xsd:string ; + owl:hasValue "GLUTRNAREDUCT-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GLUTRNAREDUCT-RXN"^^xsd:string ; + owl:hasValue "GO:0008883"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -448956,11 +448956,11 @@ bo:1250 a owl:Class ; rdfs:label "redox signal response"@en , "response to redox state"@en , "GO:0051775"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006980"^^xsd:string ; + owl:hasValue "GO:0051775"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051775"^^xsd:string ; + owl:hasValue "GO:0006980"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -449429,15 +449429,15 @@ bo:1301 a owl:Class ; rdfs:label "succino AMP-lyase"@en , "adenylosuccinase"@en , "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming)"@en , "GO:0070626"@en , "adenylosuccinate lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.2.2"^^xsd:string ; + owl:hasValue "AICARSYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AICARSYN-RXN"^^xsd:string ; + owl:hasValue "GO:0070626"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0070626"^^xsd:string ; + owl:hasValue "4.3.2.2"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -449476,7 +449476,7 @@ bo:29041 a sybio:CDS , owl:NamedIndividual ; rdfs:label "phosphohydrolase"@en , "myo-inositol-phosphate phosphohydrolase"@en , "myo-inositol monophosphatase"@en , "inositol-phosphate phosphatase"@en , "inositol 1-phosphatase"@en , "inositol monophosphate phosphatase"@en , "activity"@en , "L-myo-inositol-1-phosphate phosphatase"@en , "inositol phosphatase"@en , "myo-inositol 1-phosphatase"@en , "GO:0008934"@en , "inositol-1(or 4)-monophosphatase"@en , "myo-inositol-1-phosphatase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "3.1.3.25"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -449484,7 +449484,7 @@ bo:29041 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.3.25"^^xsd:string ; + owl:hasValue "MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -449558,6 +449558,14 @@ bo:16328 a owl:NamedIndividual , sybio:KOGE ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . +bo:4763 a owl:NamedIndividual , sybio:Operon ; + rdfs:label "rrnD"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:28721 , bo:28720 , bo:28653 , bo:28725 , bo:28722 , bo:28726 , bo:28723 , bo:28710 , bo:28714 , bo:28724 , bo:28711 , bo:28715 , bo:28709 , bo:28712 , bo:28716 , bo:28717 , bo:28718 , bo:28713 , bo:28719 ; + sybio:operonGenes "rrnD-16S,rrnD-23S,rrnD-5S,trnD-Asn,trnD-Ser,trnD-Glu,trnD-Val,trnD-Met,trnD-Asp,trnD-Phe,trnD-Thr,trnD-Tyr,trnD-Trp,trnD-His,trnD-Gln,trnD-Gly,trnD-Cys,trnD-Leu1,trnD-Leu2"@en ; + tawny:name "4763"@en . + bo:16416 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid synthase[EC:4.1.2.-]"@en ; rdfs:label "K11645"@en ; @@ -449568,14 +449576,6 @@ bo:16416 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11645"@en ; tawny:name "16416"@en . -bo:4763 a owl:NamedIndividual , sybio:Operon ; - rdfs:label "rrnD"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:28721 , bo:28720 , bo:28653 , bo:28725 , bo:28722 , bo:28726 , bo:28723 , bo:28710 , bo:28714 , bo:28724 , bo:28711 , bo:28715 , bo:28709 , bo:28712 , bo:28716 , bo:28717 , bo:28718 , bo:28713 , bo:28719 ; - sybio:operonGenes "rrnD-16S,rrnD-23S,rrnD-5S,trnD-Asn,trnD-Ser,trnD-Glu,trnD-Val,trnD-Met,trnD-Asp,trnD-Phe,trnD-Thr,trnD-Tyr,trnD-Trp,trnD-His,trnD-Gln,trnD-Gly,trnD-Cys,trnD-Leu1,trnD-Leu2"@en ; - tawny:name "4763"@en . - bo:16504 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:comment "sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]"@en ; rdfs:label "E2.3.3.15"@en ; @@ -449862,11 +449862,11 @@ bo:444 a owl:Class ; rdfs:label "GO:0016891"@en , "endoribonuclease activity, producing 5'-phosphomonoesters"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.-"^^xsd:string ; + owl:hasValue "GO:0016891"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016891"^^xsd:string ; + owl:hasValue "3.1.26.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -450016,23 +450016,23 @@ bo:4726 a sybio:Operon , owl:NamedIndividual ; rdfs:label "coenzyme A biosynthetic process"@en , "CoA biosynthesis"@en , "coenzyme A biosynthesis"@en , "coenzyme A formation"@en , "coenzyme A synthesis"@en , "coenzyme A anabolism"@en , "GO:0015937"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PANTOSYN-PWY"^^xsd:string ; + owl:hasValue "COA-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0015937"^^xsd:string ; + owl:hasValue "GO:0006764"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-4221"^^xsd:string ; + owl:hasValue "PANTOSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006764"^^xsd:string ; + owl:hasValue "GO:0015937"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COA-PWY"^^xsd:string ; + owl:hasValue "PWY-4221"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -450472,22 +450472,6 @@ bo:30458 a sybio:CDS , owl:NamedIndividual ; "1034.0"@en ; tawny:name "30458"@en . -bo:11658 a owl:Class , sybio:Pathway , owl:NamedIndividual ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00550.png"@en ; - rdfs:label "Peptidoglycan biosynthesis"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00550"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11639 , bo:11644 , bo:11594 , bo:11652 ; - sybio:derivesFrom bo:11659 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00550"@en ; - tawny:name "11658"@en . - bo:26968 a owl:NamedIndividual , sybio:Protein , bo:1001 , bo:1002 ; rdfs:comment "BSU13620;acireductone dioxygenase (Ni2+ or Fe2+ -requiring)"@en , "Acireductone dioxygenase;derived protein"@en ; rdfs:label "BSU13620"@en , "mtnD"@en , "MtnD"@en , "Ni2+ or Fe2+-requiring"@en , "YkrZ"@en ; @@ -450505,6 +450489,22 @@ bo:26968 a owl:NamedIndividual , sybio:Protein , bo:1001 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26968"@en . +bo:11658 a owl:Class , sybio:Pathway , owl:NamedIndividual ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00550.png"@en ; + rdfs:label "Peptidoglycan biosynthesis"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00550"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11639 , bo:11644 , bo:11594 , bo:11652 ; + sybio:derivesFrom bo:11659 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00550"@en ; + tawny:name "11658"@en . + bo:18037 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:comment "coenzyme F420 hydrogenase delta subunit"@en ; rdfs:label "FRHD"@en , "E1.12.98.1D"@en ; @@ -450771,11 +450771,11 @@ bo:24423 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:label "3 tRNase"@en , "tRNA 3' endonuclease"@en , "ribonuclease Z"@en , "GO:0042781"@en , "tRNA 3 endonuclease"@en , "tRNase Z"@en , "RNase Z"@en , "3' tRNA processing endoribonuclease"@en , "tRNAse Z"@en , "3'-tRNA processing endoribonuclease"@en , "3' tRNase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042781"^^xsd:string ; + owl:hasValue "3.1.26.11-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.26.11-RXN"^^xsd:string ; + owl:hasValue "GO:0042781"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -451321,71 +451321,71 @@ bo:9897 a owl:NamedIndividual , sybio:Protein , bo:464 , rdfs:label "hydrogen peroxide degradation"@en , "detoxification of hydrogen peroxide"@en , "hydrogen peroxide breakdown"@en , "hydrogen peroxide removal"@en , "hydrogen peroxide catabolic process"@en , "H2O2 scavenging"@en , "H2O2 catabolic process"@en , "GO:0042744"@en , "hydrogen peroxide catabolism"@en , "detoxification of H2O2"@en , "hydrogen peroxide scavenging"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507308 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "517323 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547528 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "448515 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542168 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "526205 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599614 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "552119 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581528 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "536465 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531091 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "469645 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469645 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "487357 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "77102 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "531091 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0042744"^^xsd:string ; + owl:hasValue "592415 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517323 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "599614 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526205 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "GO:0042744"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568326 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "542168 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448515 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "581528 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552119 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "547528 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536465 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "507308 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487357 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "77102 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592415 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; + owl:hasValue "568326 \"Breakdown of hydrogen peroxide to water and molecular oxygen\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -451414,7 +451414,7 @@ bo:9985 a sybio:Protein , owl:NamedIndividual , bo:732 ; rdfs:label "inner endospore membrane"@en , "plasma membrane lipid bilayer"@en , "GO:0005886"@en , "juxtamembrane"@en , "plasmalemma"@en , "cell membrane"@en , "plasma membrane"@en , "bacterial inner membrane"@en , "cytoplasmic membrane"@en ; rdfs:subClassOf sybio:CellularComponent , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cell_membrane"^^xsd:string ; + owl:hasValue "GO:0005886"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -451422,7 +451422,7 @@ bo:9985 a sybio:Protein , owl:NamedIndividual , bo:732 ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005886"^^xsd:string ; + owl:hasValue "Cell_membrane"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -452038,15 +452038,15 @@ bo:13631 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DUTP-PYROP-RXN"^^xsd:string ; + owl:hasValue "3.6.1.23"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.23"^^xsd:string ; + owl:hasValue "8479 \"dUTP diphosphatase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "8479 \"dUTP diphosphatase activity\""^^xsd:string ; + owl:hasValue "DUTP-PYROP-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -452163,7 +452163,7 @@ bo:7315 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "1423"@en ; tawny:name "7315"@en . -bo:20671 a sybio:EC , owl:NamedIndividual , owl:Class ; +bo:20671 a sybio:EC , owl:Class , owl:NamedIndividual ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "2.7.1.52"@en ; rdfs:subClassOf sybio:EC ; @@ -452473,7 +452473,7 @@ bo:13506 a owl:NamedIndividual , sybio:Compound ; rdfs:label "aminoacyl-tRNA hydrolase"@en , "aminoacyl-tRNA hydrolase reaction"@en , "GO:0004045"@en , "aminoacyl-transfer ribonucleate hydrolase"@en , "N-substituted aminoacyl transfer RNA hydrolase"@en , "D-tyrosyl-tRNA hydrolase"@en , "aminoacyl-tRNA aminoacylhydrolase"@en , "peptidyl-tRNA hydrolase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0019851"^^xsd:string ; + owl:hasValue "GO:0004045"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -452485,11 +452485,11 @@ bo:13506 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004045"^^xsd:string ; + owl:hasValue "3.1.1.29"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.1.29"^^xsd:string ; + owl:hasValue "GO:0019851"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -452705,11 +452705,11 @@ bo:17974 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E1.8.98.1E"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0051912"^^xsd:string ; + owl:hasValue "COG1150"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1150"^^xsd:string ; + owl:hasValue "0051912"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -452955,7 +452955,7 @@ bo:27012 a sybio:MicroarrayExperiment , owl:NamedIndividua rdfs:label "L-malate dehydrogenase"@en , "malic acid dehydrogenase"@en , "NAD-malate dehydrogenase"@en , "NAD-dependent malic dehydrogenase"@en , "malate dehydrogenase"@en , "L-malate-NAD+ oxidoreductase"@en , "GO:0030060"@en , "oxidoreductase"@en , "NAD-dependent malate dehydrogenase"@en , "malic dehydrogenase"@en , "NAD-L-malate dehydrogenase"@en , "NAD-linked malate dehydrogenase"@en , "NAD-malic dehydrogenase"@en , "MDH"@en , "NAD-specific malate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "19541 \"L-malate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "GO:0030060"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -452963,7 +452963,7 @@ bo:27012 a sybio:MicroarrayExperiment , owl:NamedIndividua owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0030060"^^xsd:string ; + owl:hasValue "19541 \"L-malate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -453009,15 +453009,15 @@ bo:21463 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "Cu2+-exporting ATPase"@en , "copper exporting ATPase"@en , "ATPase"@en , "copper-exporting ATPase"@en , "copper-translocating P-type ATPase"@en , "cu2+-exporting ATPase"@en , "ATP phosphohydrolase"@en , "GO:0004008"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004008"^^xsd:string ; + owl:hasValue "3.6.3.4-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.4"^^xsd:string ; + owl:hasValue "GO:0004008"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.3.4-RXN"^^xsd:string ; + owl:hasValue "3.6.3.4"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -453278,6 +453278,21 @@ bo:9112 a bo:436 , bo:428 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "9112"@en . +bo:3475 a owl:NamedIndividual , sybio:SigAPromoter , sybio:Promoter , sybio:ConstitutiveSigAPromoter ; + rdfs:label "ytmI"@en ; + sybio:NA "AAGGTTTACTTTTTTTGATTAGTCAAAGATCAGAGTATGCTTTATAGTATAAACAATAAAAGCTTAGTAAACAAA"^^xsd:string ; + sybio:annotatedSequence "AAGGTTTACTTTTTTTGAT{TAGTCA}AAGATCAGAGTATGCTT{TATAGT}ATAAAC/AA/TAAAAGCTTAGTAAACAAA"@en ; + sybio:begin "3008896"@en ; + sybio:boundBy bo:2600 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3008822"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "16109943,15937167,15272571"^^xsd:string ; + sybio:tfbsEnd "+20"@en ; + sybio:tfbsStart "-55"^^xsd:string ; + sybio:upstreamOf bo:28946 ; + tawny:name "3475"@en . + bo:9200 a bo:1746 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "RNA polymerase sigma-54 factor"@en , "RNA polymerase sigma-54 factor (sigma-L);BSU34200"@en ; rdfs:label "sigL"@en , "SigL"@en , "BSU34200"@en ; @@ -453297,21 +453312,6 @@ bo:9200 a bo:1746 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9200"@en . -bo:3475 a owl:NamedIndividual , sybio:SigAPromoter , sybio:Promoter , sybio:ConstitutiveSigAPromoter ; - rdfs:label "ytmI"@en ; - sybio:NA "AAGGTTTACTTTTTTTGATTAGTCAAAGATCAGAGTATGCTTTATAGTATAAACAATAAAAGCTTAGTAAACAAA"^^xsd:string ; - sybio:annotatedSequence "AAGGTTTACTTTTTTTGAT{TAGTCA}AAGATCAGAGTATGCTT{TATAGT}ATAAAC/AA/TAAAAGCTTAGTAAACAAA"@en ; - sybio:begin "3008896"@en ; - sybio:boundBy bo:2600 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3008822"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "16109943,15937167,15272571"^^xsd:string ; - sybio:tfbsEnd "+20"@en ; - sybio:tfbsStart "-55"^^xsd:string ; - sybio:upstreamOf bo:28946 ; - tawny:name "3475"@en . - bo:3563 a sybio:NegativelyRegulatedOperator , sybio:Operator , owl:NamedIndividual ; rdfs:comment "Negative"@en ; rdfs:label "CcpA_cydA"@en ; @@ -453363,11 +453363,11 @@ bo:16081 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "polyisoprenoid biosynthetic process"@en , "isoprenoid biosynthetic process"@en , "isoprenoid formation"@en , "isoprenoid synthesis"@en , "isoprenoid biosynthesis"@en , "polyterpene biosynthesis"@en , "polyisoprenoid synthesis"@en , "GO:0008299"@en , "polyisoprenoid formation"@en , "polyisoprenoid anabolism"@en , "polyterpene biosynthetic process"@en , "polyisoprenoid biosynthesis"@en , "isoprenoid anabolism"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "POLYISOPRENSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0009241"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0009241"^^xsd:string ; + owl:hasValue "POLYISOPRENSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -453437,11 +453437,11 @@ bo:18766 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "SIAT10"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004513"^^xsd:string ; + owl:hasValue "GT29"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT29"^^xsd:string ; + owl:hasValue "0004513"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -453485,11 +453485,11 @@ bo:15127 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "E5.1.2.3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008692"^^xsd:string ; + owl:hasValue "COG1024"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1024"^^xsd:string ; + owl:hasValue "0008692"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -453874,17 +453874,6 @@ bo:18729 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03877+K07819+K07820"@en ; tawny:name "18729"@en . -bo:23084 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "irreversible"@en ; - rdfs:label "alpha-Aminopropiononitrile aminohydrolase"@en , "C05714 + 2 C00001 <=> C01401 + C00014"@en , "cpd:C05714 => cpd:C05714"@en ; - sybio:accession "RN:R03542"^^xsd:string ; - sybio:catalyzedBy bo:16609 , bo:16378 ; - sybio:catalyzingClass bo:22827 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11637 ; - tawny:name "23084"@en . - bo:18817 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]"@en ; rdfs:label "UBID"@en ; @@ -453902,6 +453891,17 @@ bo:18817 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K03182+K06186"@en ; tawny:name "18817"@en . +bo:23084 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "irreversible"@en ; + rdfs:label "alpha-Aminopropiononitrile aminohydrolase"@en , "C05714 + 2 C00001 <=> C01401 + C00014"@en , "cpd:C05714 => cpd:C05714"@en ; + sybio:accession "RN:R03542"^^xsd:string ; + sybio:catalyzedBy bo:16609 , bo:16378 ; + sybio:catalyzingClass bo:22827 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11637 ; + tawny:name "23084"@en . + bo:23172 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "Cys-Gly dipeptidase - irreversible"@en ; rdfs:label "C01419 + C00001 <=> C00097 + C00037"@en , "cpd:C01419 => cpd:C01419"@en , "L-cysteinylglycine dipeptidase"@en ; @@ -454512,27 +454512,6 @@ bo:30087 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "30087"@en . -bo:11287 a sybio:Protein , bo:335 , owl:NamedIndividual ; - rdfs:comment "30S ribosomal protein S14"@en , "ribosomal protein S14;BSU01290;"@en ; - rdfs:label "rpsN1"@en , "RpsNA"@en , "BSU01290"@en ; - sybio:AA "VAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW"@en ; - sybio:accession "P12878"^^xsd:string , "BSU01290"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29200 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11270 , bo:11269 , bo:11279 , bo:11278 , bo:11280 , bo:11273 , bo:11272 , bo:11283 , bo:11266 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "7213.39"^^xsd:string ; - sybio:pI "10.464699"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11289 , bo:11299 , bo:11290 , bo:11300 , bo:11288 , bo:11291 , bo:9765 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11287"@en . - bo:26597 a bo:1605 , sybio:Protein , owl:NamedIndividual , bo:1327 ; rdfs:comment "DNA polymerase I;;derived protein"@en , "DNA polymerase I;BSU29090"@en ; rdfs:label "PolA"@en , "BSU29090"@en , "polA"@en ; @@ -454554,6 +454533,27 @@ bo:26597 a bo:1605 , sybio:Protein , owl:NamedIndividual , sybio:taxId "[224308, 1423]"@en ; tawny:name "26597"@en . +bo:11287 a sybio:Protein , bo:335 , owl:NamedIndividual ; + rdfs:comment "30S ribosomal protein S14"@en , "ribosomal protein S14;BSU01290;"@en ; + rdfs:label "rpsN1"@en , "RpsNA"@en , "BSU01290"@en ; + sybio:AA "VAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW"@en ; + sybio:accession "P12878"^^xsd:string , "BSU01290"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29200 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11270 , bo:11269 , bo:11279 , bo:11278 , bo:11280 , bo:11273 , bo:11272 , bo:11283 , bo:11266 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "7213.39"^^xsd:string ; + sybio:pI "10.464699"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11289 , bo:11299 , bo:11290 , bo:11300 , bo:11288 , bo:11291 , bo:9765 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11287"@en . + bo:30175 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU24830"@en ; rdfs:label "BSU24830"@en , "yqgT"@en ; @@ -454579,6 +454579,24 @@ bo:30175 a owl:NamedIndividual , sybio:CDS ; "18.0"@en ; tawny:name "30175"@en . +bo:26685 a owl:NamedIndividual , sybio:Protein , bo:1753 ; + rdfs:comment "BSU34400;phenolic acid decarboxylase"@en , "Phenolic acid decarboxylase padC;derived protein"@en ; + rdfs:label "YveH"@en , "BSU34400"@en , "padC"@en , "PadC"@en , "Pad"@en ; + sybio:AA "MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKVSWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYPKYVVPEFAEITFLKNEGVDNEEVISKAPYEGMTDDIRAGRL"@en ; + sybio:accession "BSU34400"^^xsd:string , "16080493"^^xsd:string , "O07006"^^xsd:string , "938579"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32952 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "4.2 : Detoxification"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "19075.81"^^xsd:string ; + sybio:pI "5.042625"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26685"@en . + bo:11375 a owl:NamedIndividual , bo:372 , bo:465 , sybio:Protein ; rdfs:comment "BSU03800;putative iron-siderophore ABC transporter (permease)"@en , "Uncharacterized ABC transporter permease protein yclN;"@en ; rdfs:label "yclN"@en , "BSU03800"@en , "YclN"@en ; @@ -454600,24 +454618,6 @@ bo:11375 a owl:NamedIndividual , bo:372 , bo:465 , sybio:P sybio:taxId "[224308, 1423]"@en ; tawny:name "11375"@en . -bo:26685 a owl:NamedIndividual , sybio:Protein , bo:1753 ; - rdfs:comment "BSU34400;phenolic acid decarboxylase"@en , "Phenolic acid decarboxylase padC;derived protein"@en ; - rdfs:label "YveH"@en , "BSU34400"@en , "padC"@en , "PadC"@en , "Pad"@en ; - sybio:AA "MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKVSWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYPKYVVPEFAEITFLKNEGVDNEEVISKAPYEGMTDDIRAGRL"@en ; - sybio:accession "BSU34400"^^xsd:string , "16080493"^^xsd:string , "O07006"^^xsd:string , "938579"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32952 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "4.2 : Detoxification"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "19075.81"^^xsd:string ; - sybio:pI "5.042625"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26685"@en . - bo:30263 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU26400"@en ; rdfs:label "BSU26400"@en , "yrkS"@en ; @@ -454643,24 +454643,6 @@ bo:30263 a owl:NamedIndividual , sybio:CDS ; "2.0"@en ; tawny:name "30263"@en . -bo:11463 a bo:873 , bo:874 , bo:517 , bo:212 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "BSU10550;biosynthesis of neotrehalosadiamine (3,3'-diamino-3,3'-dideoxy-alpha,beta-trehalose); aminotransferase"@en , "NTD biosynthesis operon protein ntdA"@en ; - rdfs:label "ntdA"@en , "YhjL"@en , "BSU10550"@en , "NtdA"@en ; - sybio:AA "MQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQVLKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLKVIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV"@en ; - sybio:accession "O07566"^^xsd:string , "BSU10550"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31000 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , ; - sybio:hasRole "1.3 : Sensors (signal transduction)"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "50138.68"^^xsd:string ; - sybio:pI "5.996559"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11463"@en . - bo:26773 a sybio:Protein , owl:NamedIndividual , bo:401 ; rdfs:comment "BSU02450;two-component response regulator [GlnJ] for glutamine utilisation"@en , "Transcriptional regulatory protein glnL;derived protein"@en ; rdfs:label "YcbB"@en , "glnL"@en , "BSU02450"@en , "GlnL"@en , "YzgB"@en ; @@ -454683,6 +454665,24 @@ bo:26773 a sybio:Protein , owl:NamedIndividual , bo:401 ; tawny:name "26773"@en ; owl:sameAs bo:6610 . +bo:11463 a bo:873 , bo:874 , bo:517 , bo:212 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "BSU10550;biosynthesis of neotrehalosadiamine (3,3'-diamino-3,3'-dideoxy-alpha,beta-trehalose); aminotransferase"@en , "NTD biosynthesis operon protein ntdA"@en ; + rdfs:label "ntdA"@en , "YhjL"@en , "BSU10550"@en , "NtdA"@en ; + sybio:AA "MQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQVLKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLKVIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV"@en ; + sybio:accession "O07566"^^xsd:string , "BSU10550"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31000 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , ; + sybio:hasRole "1.3 : Sensors (signal transduction)"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "50138.68"^^xsd:string ; + sybio:pI "5.996559"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11463"@en . + bo:30351 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU29070"@en ; rdfs:label "BSU29070"@en , "ytaF"@en ; @@ -454720,22 +454720,6 @@ bo:30351 a sybio:CDS , owl:NamedIndividual ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:11551 a owl:NamedIndividual , sybio:Pathway , owl:Class ; - rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00030.png"@en ; - rdfs:label "Pentose phosphate pathway"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "BSU00030"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:adjacentTo bo:11620 , bo:11712 , bo:11605 , bo:11578 , bo:11546 , bo:11710 , bo:11553 , bo:11574 ; - sybio:derivesFrom bo:11552 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:taxId "224308"@en ; - sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00030"@en ; - tawny:name "11551"@en . - bo:26861 a bo:1905 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "Glycerate kinase;derived protein"@en , "glycerate kinase;BSU40040;"@en ; rdfs:label "GlxK"@en , "YxaA"@en , "BSU40040"@en , "glxK"@en ; @@ -454754,6 +454738,22 @@ bo:26861 a bo:1905 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26861"@en . +bo:11551 a owl:NamedIndividual , sybio:Pathway , owl:Class ; + rdfs:comment "http://www.genome.jp/kegg/pathway/bsu/bsu00030.png"@en ; + rdfs:label "Pentose phosphate pathway"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "BSU00030"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:adjacentTo bo:11620 , bo:11712 , bo:11605 , bo:11578 , bo:11546 , bo:11710 , bo:11553 , bo:11574 ; + sybio:derivesFrom bo:11552 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:taxId "224308"@en ; + sybio:url "http://www.genome.jp/kegg-bin/show_pathway?bsu00030"@en ; + tawny:name "11551"@en . + bo:19609 a owl:NamedIndividual , sybio:Enzyme ; rdfs:comment "derived enzyme"@en ; rdfs:label "pdhB"@en ; @@ -454770,23 +454770,23 @@ bo:19609 a owl:NamedIndividual , sybio:Enzyme ; rdfs:label "beta-hydroxyacylcoenzyme A dehydrogenase"@en , "L-3-hydroxyacyl coenzyme A dehydrogenase"@en , "L-3-hydroxyacyl CoA dehydrogenase"@en , "3-hydroxyacyl-CoA dehydrogenase"@en , "beta-ketoacyl-CoA reductase"@en , "beta-keto-reductase"@en , "beta-hydroxyacyl-coenzyme A synthetase"@en , "beta-hydroxyacyl dehydrogenase"@en , "beta-hydroxybutyrylcoenzyme A dehydrogenase"@en , "GO:0003857"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.35"^^xsd:string ; + owl:hasValue "11645 \"3-hydroxyacyl-CoA dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "OHACYL-COA-DEHYDROG-RXN"^^xsd:string ; + owl:hasValue "GO:0003857"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "e0664"^^xsd:string ; + owl:hasValue "1.1.1.35"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003857"^^xsd:string ; + owl:hasValue "OHACYL-COA-DEHYDROG-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11645 \"3-hydroxyacyl-CoA dehydrogenase activity\""^^xsd:string ; + owl:hasValue "e0664"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -455106,27 +455106,27 @@ bo:11338 a sybio:Protein , bo:403 , owl:NamedIndividual ; rdfs:label "GO:0017187"@en , "peptidyl-glutamic acid carboxylation"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449262 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; + owl:hasValue "GO:0017187"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "AA0032"^^xsd:string ; + owl:hasValue "449262 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508020 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; + owl:hasValue "449260 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "508018 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; + owl:hasValue "508020 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "449260 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; + owl:hasValue "508018 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470381 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; + owl:hasValue "470379 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -455134,27 +455134,27 @@ bo:11338 a sybio:Protein , bo:403 , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517881 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; + owl:hasValue "488061 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517879 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; + owl:hasValue "159740 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0017187"^^xsd:string ; + owl:hasValue "AA0032"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "159740 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; + owl:hasValue "517879 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "488061 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; + owl:hasValue "470381 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "470379 \"Gamma-carboxylation, transport, and amino-terminal cleavage of proteins\""^^xsd:string ; + owl:hasValue "517881 \"Gamma-carboxylation of protein precursors\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -455392,19 +455392,19 @@ bo:24015 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "methylated-DNA-[protein]-cysteine S-methyltransferase"@en , "methylated-DNA-protein-cysteine S-methyltransferase"@en , "DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase"@en , "O6-alkylguanine-DNA alkyltransferase"@en , "DNA-6-O-methylguanine:[protein]-L-cysteine S-methyltransferase"@en , "MGMT"@en , "GO:0003908"@en , "O-6-methylguanine-DNA-alkyltransferase"@en , "6-O-methylguanine-DNA methyltransferase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.63"^^xsd:string ; + owl:hasValue "12455 \"methylated-DNA-[protein]-cysteine S-methyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12455 \"methylated-DNA-[protein]-cysteine S-methyltransferase activity\""^^xsd:string ; + owl:hasValue "2.1.1.63"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003908"^^xsd:string ; + owl:hasValue "2.1.1.63-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.1.1.63-RXN"^^xsd:string ; + owl:hasValue "GO:0003908"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -455644,15 +455644,15 @@ bo:12431 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.10"^^xsd:string ; + owl:hasValue "15102 \"methionine-tRNA ligase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004825"^^xsd:string ; + owl:hasValue "6.1.1.10"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "15102 \"methionine-tRNA ligase activity\""^^xsd:string ; + owl:hasValue "GO:0004825"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -456103,11 +456103,11 @@ bo:15856 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "CEFE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0050599"^^xsd:string ; + owl:hasValue "P18548"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "P18548"^^xsd:string ; + owl:hasValue "0050599"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -456151,11 +456151,11 @@ bo:16686 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "tyrosine synthesis"@en , "tyrosine formation"@en , "tyrosine biosynthetic process"@en , "tyrosine biosynthesis"@en , "GO:0006571"@en , "tyrosine anabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PWY-3461"^^xsd:string ; + owl:hasValue "GO:0006571"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006571"^^xsd:string ; + owl:hasValue "PWY-3461"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -456573,15 +456573,15 @@ bo:29186 a owl:NamedIndividual , sybio:CDS ; rdfs:label "C55-isoprenyl diphosphatase"@en , "isoprenyl pyrophosphatase"@en , "pyrophosphatase"@en , "undecaprenyl-diphosphatase"@en , "GO:0050380"@en , "undecaprenyl-diphosphate phosphohydrolase"@en , "C55-isoprenyl pyrophosphatase"@en , "diphosphatase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.27"^^xsd:string ; + owl:hasValue "UNDECAPRENYL-DIPHOSPHATASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050380"^^xsd:string ; + owl:hasValue "3.6.1.27"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "UNDECAPRENYL-DIPHOSPHATASE-RXN"^^xsd:string ; + owl:hasValue "GO:0050380"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -456777,11 +456777,11 @@ bo:16649 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "cysteine metabolic process"@en , "GO:0006534"@en , "cysteine metabolism"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006534"^^xsd:string ; + owl:hasValue "Cysteine_metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cysteine_metabolism"^^xsd:string ; + owl:hasValue "GO:0006534"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -458284,6 +458284,18 @@ bo:31960 a owl:NamedIndividual , sybio:CDS ; "6.0"@en ; tawny:name "31960"@en . +bo:25397 a owl:NamedIndividual , owl:Class , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "3.8.1.8"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "3.8.1.8"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25397"@en . + bo:10087 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "Uncharacterized protein ydgD"@en , "conserved hypothetical protein;BSU05590"@en ; rdfs:label "ydgD"@en , "YdgD"@en , "BSU05590"@en ; @@ -458300,17 +458312,16 @@ bo:10087 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10087"@en . -bo:25397 a owl:NamedIndividual , owl:Class , sybio:EC ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.8.1.8"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.8.1.8"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25397"@en . +bo:25485 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C16480 <=> cpd:C16480"@en , "C16480 + C00003 <=> C16473 + C00004 + C00011 + C00080"@en , "NAD+oxidoreductase (decarboxylating)"@en , "4-fluorocyclohexadiene-cis,cis-1,2-diol-1-carboxylate"@en ; + sybio:accession "RN:R08113"^^xsd:string ; + sybio:catalyzedBy bo:16276 ; + sybio:catalyzingClass bo:22663 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25485"@en . bo:10175 a sybio:Protein , bo:1264 , owl:NamedIndividual ; rdfs:comment "putative integral inner membrane protein;BSU18750"@en , "Uncharacterized protein yoaT"@en ; @@ -458329,16 +458340,16 @@ bo:10175 a sybio:Protein , bo:1264 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10175"@en . -bo:25485 a sybio:Reaction , owl:NamedIndividual ; +bo:25573 a owl:NamedIndividual , sybio:Reaction ; rdfs:comment "reversible"@en ; - rdfs:label "cpd:C16480 <=> cpd:C16480"@en , "C16480 + C00003 <=> C16473 + C00004 + C00011 + C00080"@en , "NAD+oxidoreductase (decarboxylating)"@en , "4-fluorocyclohexadiene-cis,cis-1,2-diol-1-carboxylate"@en ; - sybio:accession "RN:R08113"^^xsd:string ; - sybio:catalyzedBy bo:16276 ; - sybio:catalyzingClass bo:22663 ; + rdfs:label "C00043 + C00110 <=> C00105 + G00001"@en , "dolichyl-phosphate N-acetyl-D-glucosaminephosphotransferase"@en , "cpd:C00110 <=> cpd:C00110"@en , "UDP-N-acetyl-D-glucosamine"@en ; + sybio:accession "RN:R05969"^^xsd:string ; + sybio:catalyzedBy bo:18673 ; + sybio:catalyzingClass bo:25574 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25485"@en . + tawny:name "25573"@en . bo:10263 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU22820"@en , "Uncharacterized protein yphE;"@en ; @@ -458356,16 +458367,15 @@ bo:10263 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10263"@en . -bo:25573 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "C00043 + C00110 <=> C00105 + G00001"@en , "dolichyl-phosphate N-acetyl-D-glucosaminephosphotransferase"@en , "cpd:C00110 <=> cpd:C00110"@en , "UDP-N-acetyl-D-glucosamine"@en ; - sybio:accession "RN:R05969"^^xsd:string ; - sybio:catalyzedBy bo:18673 ; - sybio:catalyzingClass bo:25574 ; +bo:25661 a sybio:Reaction , owl:NamedIndividual ; + rdfs:comment "orphan"@en ; + rdfs:label "G13035 + C00001 <=> G13036 + C06472"@en , " => "@en ; + sybio:accession "RN:R07813"^^xsd:string ; + sybio:catalyzingClass bo:25662 ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; sybio:memberOf bo:11749 ; - tawny:name "25573"@en . + tawny:name "25661"@en . bo:10351 a owl:NamedIndividual , sybio:Protein ; rdfs:comment "conserved hypothetical protein;BSU27150"@en , "Uncharacterized protein yrhK"@en ; @@ -458383,16 +458393,6 @@ bo:10351 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10351"@en . -bo:25661 a sybio:Reaction , owl:NamedIndividual ; - rdfs:comment "orphan"@en ; - rdfs:label "G13035 + C00001 <=> G13036 + C06472"@en , " => "@en ; - sybio:accession "RN:R07813"^^xsd:string ; - sybio:catalyzingClass bo:25662 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25661"@en . - bo:6668 a owl:NamedIndividual , sybio:TF ; rdfs:comment "putative transcriptional regulator (MarR family)"@en ; rdfs:label "YkoM"@en , "BSU13340"@en ; @@ -458563,23 +458563,6 @@ bo:11092 a sybio:Protein , owl:NamedIndividual , bo:1803 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11092"@en . -bo:11180 a bo:568 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "BSU39980;quercetin dioxygenase"@en , "Quercetin 2,3-dioxygenase"@en ; - rdfs:label "BSU39980"@en , "QodI"@en , "YxaG"@en , "qdoI"@en ; - sybio:AA "MKTLCTHSLPKEKMPYLLRSGEGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVADIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGLFEPFFRTLGDPYEGHIFPCEPQALRFDRILQNIEALDLKVMKP"@en ; - sybio:accession "P42106"^^xsd:string , "BSU39980"^^xsd:string ; - sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32211 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , , ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "37598.17"^^xsd:string ; - sybio:pI "5.399376"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11180"@en . - bo:26490 a sybio:Protein , bo:964 , owl:NamedIndividual ; rdfs:comment "Pyrroline-5-carboxylate reductase 2;derived protein"@en , "BSU23800;pyrroline-5-carboxylate reductase"@en ; rdfs:label "ProI"@en , "proI"@en , "YqjO"@en , "BSU23800"@en ; @@ -458601,6 +458584,23 @@ bo:26490 a sybio:Protein , bo:964 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26490"@en . +bo:11180 a bo:568 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "BSU39980;quercetin dioxygenase"@en , "Quercetin 2,3-dioxygenase"@en ; + rdfs:label "BSU39980"@en , "QodI"@en , "YxaG"@en , "qdoI"@en ; + sybio:AA "MKTLCTHSLPKEKMPYLLRSGEGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVADIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGLFEPFFRTLGDPYEGHIFPCEPQALRFDRILQNIEALDLKVMKP"@en ; + sybio:accession "P42106"^^xsd:string , "BSU39980"^^xsd:string ; + sybio:biologicalProcess "16.11 : Scavenge (Catabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32211 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , , ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "37598.17"^^xsd:string ; + sybio:pI "5.399376"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11180"@en . + bo:31659 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU33100"@en ; rdfs:label "BSU33100"@en , "yvqF"@en , "liaF"@en ; @@ -459205,25 +459205,6 @@ bo:26277 a sybio:Protein , bo:495 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26277"@en . -bo:11055 a owl:NamedIndividual , sybio:Protein , bo:364 ; - rdfs:comment "BSU35090;putative efflux transporter"@en , "Uncharacterized MFS-type transporter yvmA;"@en ; - rdfs:label "yvmA"@en , "YvmA"@en , "BSU35090"@en ; - sybio:AA "LAHTKSKAVLILYTVCFSAFFASLSQNIYSPILPIIKESFHVSTAMVNLSVSVFMIVTAIMQIILGAIIDFKGARIVLITGILATAAASIGCAVTTDFTLFLIFRMIQAAGSAALPLIAATTIGQLFTGNERGSAMGTYQMLLSVAPAIAPVLGGFIGGAAGYEGIFWILAAISIVLLVTNSITFPKDSPTESMQQAKGNVFAHYKSIFTNRTGNVILTLSFVLFFIYFAVIVYLPILLTEHYHIDVGIAGLLYLPLALSTIAGTFLFKRIQAKIGLHTLFIGSNVIAACSIILFAVTHSVSLVLMALTLALFGISMGVIPPLYSTMITNEFEHNRGSAIGMFNFIRYTGMAAGPMVSAYLLTMMPSAMSFSLLGLGFAALSFCLLPPMFSPQKRTKQKKHHM"@en ; - sybio:accession "BSU35090"^^xsd:string , "O34307"^^xsd:string ; - sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:30567 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; - sybio:localisation "5 : Inner membrane protein"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "43241.99"^^xsd:string ; - sybio:pI "9.494743"^^xsd:string ; - sybio:productType "pt : putative transporter"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11055"@en . - bo:26365 a owl:NamedIndividual , sybio:Protein , bo:1101 ; rdfs:comment "Precorrin-2 dehydrogenase;derived protein"@en , "BSU15630;Precorrin-2 dehydrogenase"@en ; rdfs:label "YlnF"@en , "BSU15630"@en , "SirC"@en , "sirC"@en ; @@ -459243,6 +459224,25 @@ bo:26365 a owl:NamedIndividual , sybio:Protein , bo:1101 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26365"@en . +bo:11055 a owl:NamedIndividual , sybio:Protein , bo:364 ; + rdfs:comment "BSU35090;putative efflux transporter"@en , "Uncharacterized MFS-type transporter yvmA;"@en ; + rdfs:label "yvmA"@en , "YvmA"@en , "BSU35090"@en ; + sybio:AA "LAHTKSKAVLILYTVCFSAFFASLSQNIYSPILPIIKESFHVSTAMVNLSVSVFMIVTAIMQIILGAIIDFKGARIVLITGILATAAASIGCAVTTDFTLFLIFRMIQAAGSAALPLIAATTIGQLFTGNERGSAMGTYQMLLSVAPAIAPVLGGFIGGAAGYEGIFWILAAISIVLLVTNSITFPKDSPTESMQQAKGNVFAHYKSIFTNRTGNVILTLSFVLFFIYFAVIVYLPILLTEHYHIDVGIAGLLYLPLALSTIAGTFLFKRIQAKIGLHTLFIGSNVIAACSIILFAVTHSVSLVLMALTLALFGISMGVIPPLYSTMITNEFEHNRGSAIGMFNFIRYTGMAAGPMVSAYLLTMMPSAMSFSLLGLGFAALSFCLLPPMFSPQKRTKQKKHHM"@en ; + sybio:accession "BSU35090"^^xsd:string , "O34307"^^xsd:string ; + sybio:biologicalProcess "16.1 : Circulate"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:30567 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:hasRole "1.2 : Transport/binding proteins and lipoproteins"^^xsd:string ; + sybio:localisation "5 : Inner membrane protein"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "43241.99"^^xsd:string ; + sybio:pI "9.494743"^^xsd:string ; + sybio:productType "pt : putative transporter"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11055"@en . + bo:26453 a bo:1351 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "derived protein;Dihydrodipicolinate reductase"@en , "BSU22490;dihydrodipicolinate reductase"@en ; rdfs:label "DapB"@en , "dapB"@en , "BSU22490"@en ; @@ -459701,11 +459701,11 @@ bo:20955 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "response to stimulus"@en , "physiological response to stimulus"@en , "GO:0050896"@en ; rdfs:subClassOf sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0050896"^^xsd:string ; + owl:hasValue "GO:0051869"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0051869"^^xsd:string ; + owl:hasValue "GO:0050896"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -459796,11 +459796,11 @@ bo:14656 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "GAPN"@en , "E1.2.1.9"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008886"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0008886"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -459843,11 +459843,11 @@ bo:14744 a sybio:KOGE , owl:NamedIndividual ; rdfs:label "isoleucine valine:sodium symporter"@en , "sodium amino acid transporter"@en , "glutamate aspartate:sodium symporter"@en , "sodium excitatory amino acid symporter"@en , "sodium:amino acid transporter"@en , "sodium excitatory amino acid cotransporter"@en , "GO:0005283"@en , "threonine serine:sodium symporter"@en , "sodium:amino acid symporter"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005283"^^xsd:string ; + owl:hasValue "GO:0005285"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005285"^^xsd:string ; + owl:hasValue "GO:0005283"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -459995,7 +459995,7 @@ bo:21872 a owl:Class , sybio:EC , owl:NamedIndividual ; rdfs:label "hydroxyethylthiazole kinase"@en , "kinase"@en , "GO:0004417"@en , "2-phosphotransferase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.1.50"^^xsd:string ; + owl:hasValue "THIAZOLSYN3-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -460003,7 +460003,7 @@ bo:21872 a owl:Class , sybio:EC , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "THIAZOLSYN3-RXN"^^xsd:string ; + owl:hasValue "2.7.1.50"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -460432,15 +460432,15 @@ bo:21923 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "hydroxymethylpyrimidine phosphokinase"@en , "ATP:4-amino-2-methyl-5-phosphomethylpyrimidine phosphotransferase"@en , "phosphomethylpyrimidine kinase"@en , "GO:0008972"@en ; rdfs:subClassOf , , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008972"^^xsd:string ; + owl:hasValue "PYRIMSYN3-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PYRIMSYN3-RXN"^^xsd:string ; + owl:hasValue "2.7.4.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.4.7"^^xsd:string ; + owl:hasValue "GO:0008972"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -460506,11 +460506,11 @@ bo:15712 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "LAT"@en , "E2.6.1.36"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0045484"^^xsd:string ; + owl:hasValue "COG0160"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0160"^^xsd:string ; + owl:hasValue "0045484"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -460712,11 +460712,11 @@ bo:16189 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E3.1.1.45"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0412"^^xsd:string ; + owl:hasValue "0008806"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008806"^^xsd:string ; + owl:hasValue "COG0412"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -460860,11 +460860,11 @@ bo:17371 a owl:Class , sybio:KOEN , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0281"^^xsd:string ; + owl:hasValue "0004473"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004473"^^xsd:string ; + owl:hasValue "COG0281"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -460931,11 +460931,11 @@ bo:29042 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.3.36"^^xsd:string ; + owl:hasValue "GO:0008935"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008935"^^xsd:string ; + owl:hasValue "4.1.3.36"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -461072,95 +461072,95 @@ bo:16417 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "GO:0006302"@en , "double-strand break repair"@en ; rdfs:subClassOf , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602588 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "552289 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598159 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "531250 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557905 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "600682 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552289 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "547695 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487647 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "557905 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73890 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "GO:0006302"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526443 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "585851 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592613 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "568506 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517589 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "595426 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585851 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "602588 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469737 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "448608 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595426 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "536624 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448608 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "592613 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547695 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "526443 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006302"^^xsd:string ; + owl:hasValue "598159 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507607 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "517589 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597361 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "469737 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536624 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "487647 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531250 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "542351 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568506 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "581717 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600682 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "597361 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542351 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "73890 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581717 \"Double-Strand Break Repair\""^^xsd:string ; + owl:hasValue "507607 \"Double-Strand Break Repair\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -461449,11 +461449,11 @@ bo:17422 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.1.2.3"@en , "LLDD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004460"^^xsd:string ; + owl:hasValue "COG1304"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1304"^^xsd:string ; + owl:hasValue "0004460"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -462389,11 +462389,11 @@ bo:5607 a sybio:Terminator , owl:NamedIndividual ; rdfs:label "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"@en , "GO:0016818"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.6.1.-"^^xsd:string ; + owl:hasValue "GO:0016818"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016818"^^xsd:string ; + owl:hasValue "3.6.1.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -462537,16 +462537,6 @@ bo:12664 a owl:NamedIndividual , sybio:Compound ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05594"@en ; tawny:name "12664"@en . -bo:7390 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Replication initiator protein Rep;Replication protein;Rep protein;Putative transmembrane protein;Rep"@en ; - rdfs:label "rep"@en ; - sybio:accession "Q0EDI3"^^xsd:string , "Q8RKI4"^^xsd:string , "Q8RKI1"^^xsd:string , "Q53555"^^xsd:string , "Q45504"^^xsd:string , "Q3YFI5"^^xsd:string , "Q45447"^^xsd:string , "Q5MCL7"^^xsd:string , "Q8RKI3"^^xsd:string , "Q8RKI2"^^xsd:string , "Q9X3Y9"^^xsd:string , "Q5MCL6"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction ; - sybio:locatedIn , ; - tawny:name "7390"@en . - bo:19043 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]"@en ; rdfs:label "LPXK"@en ; @@ -462557,6 +462547,16 @@ bo:19043 a sybio:KOGE , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00912"@en ; tawny:name "19043"@en . +bo:7390 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Replication initiator protein Rep;Replication protein;Rep protein;Putative transmembrane protein;Rep"@en ; + rdfs:label "rep"@en ; + sybio:accession "Q0EDI3"^^xsd:string , "Q8RKI4"^^xsd:string , "Q8RKI1"^^xsd:string , "Q53555"^^xsd:string , "Q45504"^^xsd:string , "Q3YFI5"^^xsd:string , "Q45447"^^xsd:string , "Q5MCL7"^^xsd:string , "Q8RKI3"^^xsd:string , "Q8RKI2"^^xsd:string , "Q9X3Y9"^^xsd:string , "Q5MCL6"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/GOAEBI"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction ; + sybio:locatedIn , ; + tawny:name "7390"@en . + bo:31552 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU29600"@en ; rdfs:label "braB"@en , "BSU29600"@en ; @@ -462918,99 +462918,99 @@ bo:26082 a sybio:Reaction , owl:NamedIndividual ; rdfs:label "GO:0005975"@en , "carbohydrate metabolic process"@en , "carbohydrate metabolism"@en ; rdfs:subClassOf sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "585745 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "Carbohydrate_metabolism"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531076 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "598076 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547511 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "552109 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "71387 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "GO:0005975"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536449 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "448487 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "598076 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "526186 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "487336 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "600550 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469617 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "557702 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "595291 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "602409 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448487 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "585745 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Carbohydrate_metabolism"^^xsd:string ; + owl:hasValue "507287 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526186 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "71387 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "600550 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "595291 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "552109 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "568311 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507287 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "469617 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005975"^^xsd:string ; + owl:hasValue "599604 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592407 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "542153 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "599604 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "547511 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581513 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "597267 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542153 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "531076 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "597267 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "487336 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568311 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "536449 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "602409 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "581513 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "557702 \"Metabolism of carbohydrates\""^^xsd:string ; + owl:hasValue "592407 \"Metabolism of carbohydrates\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -463158,11 +463158,11 @@ bo:19006 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "B3GAT2"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0015018"^^xsd:string ; + owl:hasValue "GT43"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT43"^^xsd:string ; + owl:hasValue "0015018"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -463895,11 +463895,11 @@ bo:14461 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.1.2.-"^^xsd:string ; + owl:hasValue "R10-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "R10-RXN"^^xsd:string ; + owl:hasValue "4.1.2.-"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -464093,7 +464093,7 @@ bo:2596 a sybio:TF , owl:NamedIndividual ; rdfs:label "metalloendopeptidase"@en , "metalloendoprotease"@en , "GO:0004222"@en , "metalloendoproteinase"@en ; rdfs:subClassOf , sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1791 \"metalloendopeptidase activity\""^^xsd:string ; + owl:hasValue "3.4.24.-"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -464101,7 +464101,7 @@ bo:2596 a sybio:TF , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.4.24.-"^^xsd:string ; + owl:hasValue "1791 \"metalloendopeptidase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -464228,11 +464228,11 @@ bo:17887 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "NNMT"@en , "E2.1.1.1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008112"^^xsd:string ; + owl:hasValue "COG0500"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0500"^^xsd:string ; + owl:hasValue "0008112"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -464613,11 +464613,11 @@ bo:18892 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "STT3"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008250"^^xsd:string ; + owl:hasValue "GT66"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004579"^^xsd:string ; + owl:hasValue "0008250"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -464625,7 +464625,7 @@ bo:18892 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT66"^^xsd:string ; + owl:hasValue "0004579"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -464810,6 +464810,21 @@ bo:9113 a bo:401 , bo:402 , sybio:Protein , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "9113"@en . +bo:3476 a sybio:Promoter , sybio:ConstitutiveSigAPromoter , sybio:SigAPromoter , owl:NamedIndividual ; + rdfs:label "ytlI"@en ; + sybio:NA "AAATATATAATTCCTATTTGTTTACTAAGCTTTTATTGTTTATACTATAAAGCATACTCTGATCTTTGACTAAT"^^xsd:string ; + sybio:annotatedSequence "AAATATATAATTCCTATTTG{TTTACT}AAGCTTTTATTGTTTA{TACTAT}AAAGCA/T/ACTCTGATCTTTGACTAAT"@en ; + sybio:begin "3008806"@en ; + sybio:boundBy bo:2600 ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:end "3008879"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:pmid "16109943"^^xsd:string ; + sybio:tfbsEnd "+20"@en ; + sybio:tfbsStart "-54"^^xsd:string ; + sybio:upstreamOf bo:32329 ; + tawny:name "3476"@en . + bo:9201 a sybio:Protein , bo:387 , owl:NamedIndividual ; rdfs:comment "RNA polymerase ECF (extracytoplasmic function)-type sigma factor (sigma(M));BSU09520"@en , "RNA polymerase sigma factor sigM"@en ; rdfs:label "BSU09520"@en , "sigM"@en , "YhdM"@en , "SigM"@en ; @@ -464828,21 +464843,6 @@ bo:9201 a sybio:Protein , bo:387 , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "9201"@en . -bo:3476 a sybio:Promoter , sybio:ConstitutiveSigAPromoter , sybio:SigAPromoter , owl:NamedIndividual ; - rdfs:label "ytlI"@en ; - sybio:NA "AAATATATAATTCCTATTTGTTTACTAAGCTTTTATTGTTTATACTATAAAGCATACTCTGATCTTTGACTAAT"^^xsd:string ; - sybio:annotatedSequence "AAATATATAATTCCTATTTG{TTTACT}AAGCTTTTATTGTTTA{TACTAT}AAAGCA/T/ACTCTGATCTTTGACTAAT"@en ; - sybio:begin "3008806"@en ; - sybio:boundBy bo:2600 ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:end "3008879"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:pmid "16109943"^^xsd:string ; - sybio:tfbsEnd "+20"@en ; - sybio:tfbsStart "-54"^^xsd:string ; - sybio:upstreamOf bo:32329 ; - tawny:name "3476"@en . - bo:3564 a sybio:Operator , owl:NamedIndividual , sybio:NegativelyRegulatedOperator ; rdfs:comment "Negative"@en ; rdfs:label "CcpA_dctP"@en ; @@ -464865,11 +464865,11 @@ bo:3564 a sybio:Operator , owl:NamedIndividual , sybio:Ne rdfs:label "receptor-associated protein"@en , "GO:0005102"@en , "receptor ligand"@en , "receptor binding"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005102"^^xsd:string ; + owl:hasValue "Ligand_(biochemistry)"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Ligand_(biochemistry)"^^xsd:string ; + owl:hasValue "GO:0005102"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -464963,11 +464963,11 @@ bo:18679 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "ALG1"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GT33"^^xsd:string ; + owl:hasValue "0004578"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004578"^^xsd:string ; + owl:hasValue "GT33"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -465028,7 +465028,7 @@ bo:18855 a owl:NamedIndividual , sybio:KOPR ; rdfs:label "L-rhamnose isomerase"@en , "L-rhamnose aldose-ketose-isomerase"@en , "rhamnose isomerase"@en , "GO:0008740"@en , "L-rhamnose ketol-isomerase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008740"^^xsd:string ; + owl:hasValue "RHAMNISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -465036,7 +465036,7 @@ bo:18855 a owl:NamedIndividual , sybio:KOPR ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RHAMNISOM-RXN"^^xsd:string ; + owl:hasValue "GO:0008740"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -465091,11 +465091,11 @@ bo:15304 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "SURE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0496"^^xsd:string ; + owl:hasValue "0008253"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008253"^^xsd:string ; + owl:hasValue "COG0496"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -465352,6 +465352,16 @@ bo:10496 a bo:1500 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10496"@en . +bo:25894 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "cpd:C05316 <=> cpd:C05316"@en , "12-hydroxydihydrochelirubine12-O-methyltransferase"@en , "C00019 + C05193 <=> C00021 + C05316 + C00080"@en , "S-Adenosyl-L-methionine"@en ; + sybio:accession "RN:R04705"^^xsd:string ; + sybio:catalyzingClass bo:25895 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25894"@en . + bo:10584 a bo:462 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Bacilysin biosynthesis oxidoreductase ywfH;"@en , "carrier protein reductase of bacilysin synthesis;BSU37680"@en ; rdfs:label "ywfH"@en , "BSU37680"@en , "Ipa-86r"@en , "YwfH"@en ; @@ -465369,15 +465379,17 @@ bo:10584 a bo:462 , sybio:Protein , owl:NamedIndividual ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10584"@en . -bo:25894 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "cpd:C05316 <=> cpd:C05316"@en , "12-hydroxydihydrochelirubine12-O-methyltransferase"@en , "C00019 + C05193 <=> C00021 + C05316 + C00080"@en , "S-Adenosyl-L-methionine"@en ; - sybio:accession "RN:R04705"^^xsd:string ; - sybio:catalyzingClass bo:25895 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25894"@en . +bo:25982 a owl:Class , sybio:EC , owl:NamedIndividual ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "1.14.11.19"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "1.14.11.19"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25982"@en . bo:10672 a bo:568 , bo:374 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "Uncharacterized HTH-type transcriptional regulator ydeC"@en , "BSU05150;putative transcriptional regulator (AraC/XylS family)"@en ; @@ -465399,18 +465411,6 @@ bo:10672 a bo:568 , bo:374 , sybio:Protein , owl:NamedIndi tawny:name "10672"@en ; owl:sameAs bo:6609 . -bo:25982 a owl:Class , sybio:EC , owl:NamedIndividual ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "1.14.11.19"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.14.11.19"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25982"@en . - bo:17051 a sybio:KOGE , owl:NamedIndividual ; rdfs:comment "inositol-polyphosphate multikinase [EC:2.7.1.151]"@en ; rdfs:label "E2.7.1.151"@en , "IPMK"@en ; @@ -465497,15 +465497,15 @@ bo:18818 a owl:NamedIndividual , sybio:KOGE ; rdfs:label "reductase"@en , "GO:0008703"@en , "aminodioxyphosphoribosylaminopyrimidine reductase"@en , "1'-oxidoreductase"@en , "5-amino-6-(5-phosphoribosylamino)uracil reductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBOFLAVINSYNREDUC-RXN"^^xsd:string ; + owl:hasValue "1.1.1.193"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008703"^^xsd:string ; + owl:hasValue "RIBOFLAVINSYNREDUC-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.193"^^xsd:string ; + owl:hasValue "GO:0008703"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -465674,10 +465674,10 @@ bo:24090 a owl:NamedIndividual , sybio:Reaction ; a owl:Class , sybio:MolecularFunction , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: UTP + alpha-D-glucose 1-phosphate = diphosphate + UDP-glucose."@en ; - rdfs:label "UTP:glucose-1-phosphate uridylyltransferase"@en , "uridine-diphosphate glucose pyrophosphorylase"@en , "uridine diphosphate-D-glucose pyrophosphorylase"@en , "UTP:alpha-D-glucose-1-phosphate uridylyltransferase"@en , "glucose-1-phosphate uridylyltransferase"@en , "UDPG pyrophosphorylase"@en , "UTP-glucose-1-phosphate uridylyltransferase"@en , "GO:0003983"@en , "uridine 5'-diphosphoglucose pyrophosphorylase"@en , "uridine diphosphoglucose pyrophosphorylase"@en , "UDP glucose pyrophosphorylase"@en , "UDPG phosphorylase"@en , "UDP-glucose diphosphorylase"@en , "UDP-glucose pyrophosphorylase"@en ; + rdfs:label "UTP:glucose-1-phosphate uridylyltransferase"@en , "uridine-diphosphate glucose pyrophosphorylase"@en , "uridine diphosphate-D-glucose pyrophosphorylase"@en , "UTP:alpha-D-glucose-1-phosphate uridylyltransferase"@en , "glucose-1-phosphate uridylyltransferase"@en , "UDPG pyrophosphorylase"@en , "UTP-glucose-1-phosphate uridylyltransferase"@en , "GO:0003983"@en , "uridine 5'-diphosphoglucose pyrophosphorylase"@en , "uridine diphosphoglucose pyrophosphorylase"@en , "UDP glucose pyrophosphorylase"@en , "UDPG phosphorylase"@en , "UDP-glucose pyrophosphorylase"@en , "UDP-glucose diphosphorylase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "12708 \"UTP:glucose-1-phosphate uridylyltransferase activity\""^^xsd:string ; + owl:hasValue "2.7.7.9"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -465685,11 +465685,11 @@ bo:24090 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.7.9"^^xsd:string ; + owl:hasValue "GO:0003983"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003983"^^xsd:string ; + owl:hasValue "12708 \"UTP:glucose-1-phosphate uridylyltransferase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -466089,27 +466089,6 @@ bo:30088 a sybio:CDS , owl:NamedIndividual ; "11.0"@en ; tawny:name "30088"@en . -bo:11288 a sybio:Protein , owl:NamedIndividual , bo:336 ; - rdfs:comment "30S ribosomal protein S8"@en , "ribosomal protein S8 (BS8);BSU01300"@en ; - rdfs:label "RpsH"@en , "BSU01300"@en , "rpsH"@en ; - sybio:AA "MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW"@en ; - sybio:accession "BSU01300"^^xsd:string , "P12879"^^xsd:string ; - sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:29201 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; - sybio:interactsWith bo:11283 , bo:11266 , bo:11270 , bo:11269 , bo:11279 , bo:11280 , bo:11287 , bo:11278 , bo:11273 , bo:11272 ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "14876.795"^^xsd:string ; - sybio:pI "9.864525"^^xsd:string ; - sybio:productType "s : structure"^^xsd:string ; - sybio:relatedTo bo:11290 , bo:9218 , bo:26794 , bo:11289 , bo:11301 , bo:11299 , bo:11300 , bo:11307 , bo:11293 , bo:11291 , bo:9360 , bo:9336 , bo:9165 , bo:26902 , bo:9471 , bo:11294 , bo:11292 , bo:26796 , bo:9361 , bo:9335 , bo:9765 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11288"@en . - bo:26598 a bo:403 , sybio:Protein , bo:571 , owl:NamedIndividual ; rdfs:comment "Alkaline phosphatase synthesis sensor protein phoR;Sensor protein;derived protein"@en , "two-component sensor histidine kinase;BSU29100"@en ; rdfs:label "BSU29100"@en , "phoR"@en , "PhoR"@en ; @@ -466131,6 +466110,27 @@ bo:26598 a bo:403 , sybio:Protein , bo:571 , owl:NamedIndi sybio:taxId "224308"@en ; tawny:name "26598"@en . +bo:11288 a sybio:Protein , owl:NamedIndividual , bo:336 ; + rdfs:comment "30S ribosomal protein S8"@en , "ribosomal protein S8 (BS8);BSU01300"@en ; + rdfs:label "RpsH"@en , "BSU01300"@en , "rpsH"@en ; + sybio:AA "MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW"@en ; + sybio:accession "BSU01300"^^xsd:string , "P12879"^^xsd:string ; + sybio:biologicalProcess "16.2 : Construct biomass (Anabolism)"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:29201 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:hasRole "3.7.1 : Ribosomal proteins"^^xsd:string ; + sybio:interactsWith bo:11283 , bo:11266 , bo:11270 , bo:11269 , bo:11279 , bo:11280 , bo:11287 , bo:11278 , bo:11273 , bo:11272 ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "14876.795"^^xsd:string ; + sybio:pI "9.864525"^^xsd:string ; + sybio:productType "s : structure"^^xsd:string ; + sybio:relatedTo bo:11290 , bo:9218 , bo:26794 , bo:11289 , bo:11301 , bo:11299 , bo:11300 , bo:11307 , bo:11293 , bo:11291 , bo:9360 , bo:9336 , bo:9165 , bo:26902 , bo:9471 , bo:11294 , bo:11292 , bo:26796 , bo:9361 , bo:9335 , bo:9765 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11288"@en . + bo:30176 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU24840"@en ; rdfs:label "BSU24840"@en , "yqgS"@en ; @@ -466156,6 +466156,24 @@ bo:30176 a sybio:CDS , owl:NamedIndividual ; "176.0"@en ; tawny:name "30176"@en . +bo:26686 a bo:1650 , owl:NamedIndividual , sybio:Protein ; + rdfs:comment "Putative carbonic anhydrase yvdA;derived protein"@en , "putative carbonic anhydrase;BSU34670"@en ; + rdfs:label "yvdA"@en , "YvdA"@en , "BSU34670"@en ; + sybio:AA "MNQMVSLTSILEHNQRFVSEKKYEPYKTTKFPSKKLVIVTCMDTRLTELLPQAMGLKNGDAKIVKNAGAIVSHPFGSVMRSILVAIYELQAEEVCIVGHHECGMSGLNASSILEKAKERGVEDSCLNLLTSAGLDLKTWLTGFHSVEESVSHSVNMIKNHPLLPKKVPVHGLVIHPETGKLDVVINGYETELINNHS"@en ; + sybio:accession "937999"^^xsd:string , "O06983"^^xsd:string , "16080520"^^xsd:string , "BSU34670"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; + sybio:encodedBy bo:32959 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "21713.25"^^xsd:string ; + sybio:pI "6.780556"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "26686"@en . + bo:11376 a sybio:Protein , bo:372 , bo:465 , owl:NamedIndividual ; rdfs:comment "Uncharacterized ABC transporter permease protein yclO"@en , "BSU03810;putative iron-siderophore ABC transporter (permease)"@en ; rdfs:label "YclO"@en , "BSU03810"@en , "yclO"@en ; @@ -466177,24 +466195,6 @@ bo:11376 a sybio:Protein , bo:372 , bo:465 , owl:NamedIndi sybio:taxId "[224308, 1423]"@en ; tawny:name "11376"@en . -bo:26686 a bo:1650 , owl:NamedIndividual , sybio:Protein ; - rdfs:comment "Putative carbonic anhydrase yvdA;derived protein"@en , "putative carbonic anhydrase;BSU34670"@en ; - rdfs:label "yvdA"@en , "YvdA"@en , "BSU34670"@en ; - sybio:AA "MNQMVSLTSILEHNQRFVSEKKYEPYKTTKFPSKKLVIVTCMDTRLTELLPQAMGLKNGDAKIVKNAGAIVSHPFGSVMRSILVAIYELQAEEVCIVGHHECGMSGLNASSILEKAKERGVEDSCLNLLTSAGLDLKTWLTGFHSVEESVSHSVNMIKNHPLLPKKVPVHGLVIHPETGKLDVVINGYETELINNHS"@en ; - sybio:accession "937999"^^xsd:string , "O06983"^^xsd:string , "16080520"^^xsd:string , "BSU34670"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:KEGG"@en ; - sybio:encodedBy bo:32959 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "2.1.1 : Specific pathways"^^xsd:string ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "21713.25"^^xsd:string ; - sybio:pI "6.780556"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "26686"@en . - bo:30264 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU26410"@en ; rdfs:label "yrkR"@en , "BSU26410"@en , "psiE"@en ; @@ -466220,23 +466220,6 @@ bo:30264 a sybio:CDS , owl:NamedIndividual ; "8.0"@en ; tawny:name "30264"@en . -bo:11464 a sybio:Protein , owl:NamedIndividual , bo:750 ; - rdfs:comment "Uncharacterized protein yflK"@en , "putative sulfur carrier;BSU07650"@en ; - rdfs:label "YflK"@en , "BSU07650"@en , "yflK"@en ; - sybio:AA "MKQERYSVLSLNLGKPQTLEYDGKKIETGIMKRPAKSAVMLYRENFEGDGQADLVNHGGPDKAVCVYPAEHYPFWEEFLSRPLSNAAFGENLTVAGLTEENVCIGDVFRLDEAVVQVSQPRQPCVKLAKKFGVKEMVLKVQQTGYTGFYFRVLEEGRVSPGANLELLSRGEKGISVQFANRINYHDAKNLTAIERILSEAALSESWRASFMKKKDRLLPVE"@en ; - sybio:accession "O34542"^^xsd:string , "BSU07650"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:31049 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "24833.46"^^xsd:string ; - sybio:pI "7.907845"^^xsd:string ; - sybio:productType "pc : putative carrier"^^xsd:string ; - sybio:relatedTo bo:9209 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11464"@en . - bo:26774 a bo:1244 , bo:239 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "BSU35670;UTP-glucose-1-phosphate uridylyltransferase"@en , "UTP--glucose-1-phosphate uridylyltransferase;derived protein"@en ; rdfs:label "BSU35670"@en , "GtaB"@en , "gtaB"@en ; @@ -466256,6 +466239,23 @@ bo:26774 a bo:1244 , bo:239 , sybio:Protein , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "26774"@en . +bo:11464 a sybio:Protein , owl:NamedIndividual , bo:750 ; + rdfs:comment "Uncharacterized protein yflK"@en , "putative sulfur carrier;BSU07650"@en ; + rdfs:label "YflK"@en , "BSU07650"@en , "yflK"@en ; + sybio:AA "MKQERYSVLSLNLGKPQTLEYDGKKIETGIMKRPAKSAVMLYRENFEGDGQADLVNHGGPDKAVCVYPAEHYPFWEEFLSRPLSNAAFGENLTVAGLTEENVCIGDVFRLDEAVVQVSQPRQPCVKLAKKFGVKEMVLKVQQTGYTGFYFRVLEEGRVSPGANLELLSRGEKGISVQFANRINYHDAKNLTAIERILSEAALSESWRASFMKKKDRLLPVE"@en ; + sybio:accession "O34542"^^xsd:string , "BSU07650"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:31049 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "24833.46"^^xsd:string ; + sybio:pI "7.907845"^^xsd:string ; + sybio:productType "pc : putative carrier"^^xsd:string ; + sybio:relatedTo bo:9209 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11464"@en . + bo:6190 a sybio:Operon , owl:NamedIndividual ; rdfs:label "yxiA"@en ; sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; @@ -466289,17 +466289,6 @@ bo:30352 a owl:NamedIndividual , sybio:CDS ; "193.0"@en ; tawny:name "30352"@en . -bo:11552 a sybio:Pathway , owl:NamedIndividual , owl:Class ; - rdfs:comment "Derived KO Pathway for path:bsu00030"@en ; - rdfs:subClassOf sybio:Pathway ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "PATH:KO00030"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "11552"@en . - bo:26862 a bo:1256 , sybio:Protein , bo:820 , owl:NamedIndividual ; rdfs:comment "derived protein;Gluconokinase;"@en , "BSU40060;gluconate kinase;"@en ; rdfs:label "GntK"@en , "gntK"@en , "BSU40060"@en ; @@ -466318,6 +466307,17 @@ bo:26862 a bo:1256 , sybio:Protein , bo:820 , owl:NamedInd sybio:taxId "[224308, 1423]"@en ; tawny:name "26862"@en . +bo:11552 a sybio:Pathway , owl:NamedIndividual , owl:Class ; + rdfs:comment "Derived KO Pathway for path:bsu00030"@en ; + rdfs:subClassOf sybio:Pathway ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "PATH:KO00030"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "11552"@en . + bo:30440 a owl:NamedIndividual , sybio:CDS ; rdfs:comment "BSU32220"@en ; rdfs:label "yutI"@en , "BSU32220"@en ; @@ -466380,19 +466380,19 @@ bo:11640 a sybio:Pathway , owl:NamedIndividual , owl:Class ; rdfs:label "GO:0003858"@en , "D-beta-hydroxybutyrate dehydrogenase"@en , "3-hydroxybutyrate dehydrogenase"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0003858"^^xsd:string ; + owl:hasValue "3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "11646 \"3-hydroxybutyrate dehydrogenase activity\""^^xsd:string ; + owl:hasValue "1.1.1.30"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.30"^^xsd:string ; + owl:hasValue "11646 \"3-hydroxybutyrate dehydrogenase activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "GO:0003858"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -466598,7 +466598,7 @@ bo:32948 a owl:NamedIndividual , sybio:CDS ; rdfs:label "succinate-CoA ligase (ADP-forming)"@en , "succinate thiokinase"@en , "A-STK"@en , "succinyl coenzyme A synthetase"@en , "succinyl-CoA synthetase"@en , "GO:0004775"@en , "succinate:CoA ligase"@en , "A-SCS"@en , "succinic thiokinase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "14321 \"succinate-CoA ligase (ADP-forming) activity\""^^xsd:string ; + owl:hasValue "GO:0004775"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -466606,11 +466606,11 @@ bo:32948 a owl:NamedIndividual , sybio:CDS ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "SUCCCOASYN-RXN"^^xsd:string ; + owl:hasValue "14321 \"succinate-CoA ligase (ADP-forming) activity\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004775"^^xsd:string ; + owl:hasValue "SUCCCOASYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -466901,11 +466901,11 @@ bo:11603 a owl:Class , sybio:Pathway , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GSAAMINOTRANS-RXN"^^xsd:string ; + owl:hasValue "5.4.3.8"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.3.8"^^xsd:string ; + owl:hasValue "GSAAMINOTRANS-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -466947,11 +466947,11 @@ bo:14977 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "LACD"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0009025"^^xsd:string ; + owl:hasValue "COG3684"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3684"^^xsd:string ; + owl:hasValue "0009025"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -467172,16 +467172,6 @@ bo:31320 a owl:NamedIndividual , sybio:CDS ; "9.0"@en ; tawny:name "31320"@en . -bo:27830 a owl:NamedIndividual , sybio:RBS ; - rdfs:label "yvyD_RBS"@en ; - sybio:NA "TAAAAGGGAGGCGTTCTTTG"^^xsd:string ; - sybio:begin "3631592"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; - sybio:end "3631573"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; - sybio:upstreamOf bo:28799 ; - tawny:name "27830"@en . - bo:12520 a sybio:Compound , owl:NamedIndividual ; rdfs:comment "C22H36N4O13"@en ; rdfs:label "Aerobactin"@en , "C22H36N4O13"@en ; @@ -467192,6 +467182,16 @@ bo:12520 a sybio:Compound , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?C05554"@en ; tawny:name "12520"@en . +bo:27830 a owl:NamedIndividual , sybio:RBS ; + rdfs:label "yvyD_RBS"@en ; + sybio:NA "TAAAAGGGAGGCGTTCTTTG"^^xsd:string ; + sybio:begin "3631592"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope"@en ; + sybio:end "3631573"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IEA"@en ; + sybio:upstreamOf bo:28799 ; + tawny:name "27830"@en . + a owl:NamedIndividual , sybio:MolecularFunction , owl:Class ; rdfs:comment "Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe)."@en ; @@ -467202,7 +467202,7 @@ bo:12520 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "6.1.1.20"^^xsd:string ; + owl:hasValue "GO:0004826"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -467210,7 +467210,7 @@ bo:12520 a sybio:Compound , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004826"^^xsd:string ; + owl:hasValue "6.1.1.20"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -467264,11 +467264,11 @@ bo:15982 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "ASTA"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3138"^^xsd:string ; + owl:hasValue "0008791"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008791"^^xsd:string ; + owl:hasValue "COG3138"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -467705,11 +467705,11 @@ bo:15857 a sybio:KOGE , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Post-transcriptional_modification"^^xsd:string ; + owl:hasValue "GO:0006394"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006394"^^xsd:string ; + owl:hasValue "Post-transcriptional_modification"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -467818,11 +467818,11 @@ bo:16951 a sybio:KOEN , owl:Class , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0046510"^^xsd:string ; + owl:hasValue "COG0438"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0438"^^xsd:string ; + owl:hasValue "0046510"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -468070,11 +468070,11 @@ bo:9717 a sybio:Protein , bo:1560 , owl:NamedIndividual ; rdfs:label "GO:0005618"@en , "cell wall"@en ; rdfs:subClassOf sybio:CellularComponent ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0005618"^^xsd:string ; + owl:hasValue "Cell_wall"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "Cell_wall"^^xsd:string ; + owl:hasValue "GO:0005618"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -468410,11 +468410,11 @@ bo:4997 a sybio:Operon , owl:NamedIndividual ; rdfs:label "GO:0006535"@en , "cysteine anabolism from serine"@en , "cysteine biosynthetic process from serine"@en , "cysteine synthesis from serine"@en , "cysteine formation from serine"@en ; rdfs:subClassOf sybio:BiologicalProcess , , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006535"^^xsd:string ; + owl:hasValue "CYSTSYN-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "CYSTSYN-PWY"^^xsd:string ; + owl:hasValue "GO:0006535"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -468425,11 +468425,11 @@ bo:16738 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E3.2.1.58"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004338"^^xsd:string ; + owl:hasValue "COG2730"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2730"^^xsd:string ; + owl:hasValue "0004338"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -468437,6 +468437,16 @@ bo:16738 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01210"@en ; tawny:name "16738"@en . +bo:16826 a sybio:KOGE , owl:NamedIndividual ; + rdfs:comment "N-acylglucosamine 2-epimerase [EC:5.1.3.8]"@en ; + rdfs:label "RENBP"@en ; + sybio:accession "0050121"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:encodes bo:16827 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01787"@en ; + tawny:name "16826"@en . + bo:21093 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "irreversible"@en ; rdfs:label "all-trans-nonaprenyl-diphosphate"@en , "cpd:C00544 + cpd:C04145 => cpd:C00544 + cpd:C04145"@en , "homogentisate nonaprenyltransferase(decarboxylating)"@en , "C00544 + C04145 <=> C17570 + C00013 + C00011"@en ; @@ -468448,16 +468458,6 @@ bo:21093 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11570 ; tawny:name "21093"@en . -bo:16826 a sybio:KOGE , owl:NamedIndividual ; - rdfs:comment "N-acylglucosamine 2-epimerase [EC:5.1.3.8]"@en ; - rdfs:label "RENBP"@en ; - sybio:accession "0050121"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:encodes bo:16827 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K01787"@en ; - tawny:name "16826"@en . - bo:28409 a owl:NamedIndividual , sybio:RBS ; rdfs:label "rpoE_RBS"@en ; sybio:NA "TAGAAAGGGAGTGTCCGACC"^^xsd:string ; @@ -468630,7 +468630,7 @@ bo:17479 a owl:NamedIndividual , owl:Class , sybio:KOEN ; rdfs:label "dehydrogenase ribitol 5-phosphate"@en , "ribitol-5-phosphate 2-dehydrogenase"@en , "GO:0050256"@en , "2-oxidoreductase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "RIBITOL-5-PHOSPHATE-2-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.1.1.137"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -468638,7 +468638,7 @@ bo:17479 a owl:NamedIndividual , owl:Class , sybio:KOEN ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.137"^^xsd:string ; + owl:hasValue "RIBITOL-5-PHOSPHATE-2-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -469641,11 +469641,11 @@ bo:19188 a sybio:KOPR , owl:NamedIndividual ; rdfs:label "aromatic amino acid family synthesis"@en , "aromatic amino acid family biosynthetic process shikimate pathway"@en , "GO:0009073"@en , "aromatic amino acid family biosynthetic process"@en , "aromatic amino acid family anabolism"@en , "aromatic amino acid family biosynthesis"@en , "aromatic amino acid family formation"@en ; rdfs:subClassOf , sybio:BiologicalProcess , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COMPLETE-ARO-PWY"^^xsd:string ; + owl:hasValue "GO:0016089"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0016089"^^xsd:string ; + owl:hasValue "COMPLETE-ARO-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -469869,23 +469869,6 @@ bo:31961 a owl:NamedIndividual , sybio:CDS ; "275.0"@en ; tawny:name "31961"@en . -bo:10088 a sybio:Protein , owl:NamedIndividual , bo:385 ; - rdfs:comment "Uncharacterized N-acetyltransferase ydgE"@en , "BSU05600;putative N-acetyltransferase"@en ; - rdfs:label "BSU05600"@en , "ydgE"@en , "YdgE"@en ; - sybio:AA "MAFTLEDMTEEEFEAFRGMSVQNFAKQNITSGTWTEKEAFEKSEQAYENMIPNGRDSSNHYFWNITNDQGERMGWLWLYADPLHPQKEAFIYSFGLYEAFRGKGLAQLALQTLDERARELGAERLALHVFAHNETAVYLYQKMGYAMTNIRMRKQLC"@en ; - sybio:accession "BSU05600"^^xsd:string , "P96703"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; - sybio:encodedBy bo:31982 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:molecularWeight "18373.03"^^xsd:string ; - sybio:pI "5.251228"^^xsd:string ; - sybio:productType "pe : putative enzyme"^^xsd:string ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "10088"@en . - bo:19540 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from gene annotation"@en ; rdfs:label "2.7.7.-"@en ; @@ -469909,6 +469892,33 @@ bo:25398 a sybio:Reaction , owl:NamedIndividual ; sybio:memberOf bo:11749 ; tawny:name "25398"@en . +bo:10088 a sybio:Protein , owl:NamedIndividual , bo:385 ; + rdfs:comment "Uncharacterized N-acetyltransferase ydgE"@en , "BSU05600;putative N-acetyltransferase"@en ; + rdfs:label "BSU05600"@en , "ydgE"@en , "YdgE"@en ; + sybio:AA "MAFTLEDMTEEEFEAFRGMSVQNFAKQNITSGTWTEKEAFEKSEQAYENMIPNGRDSSNHYFWNITNDQGERMGWLWLYADPLHPQKEAFIYSFGLYEAFRGKGLAQLALQTLDERARELGAERLALHVFAHNETAVYLYQKMGYAMTNIRMRKQLC"@en ; + sybio:accession "BSU05600"^^xsd:string , "P96703"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI"@en ; + sybio:encodedBy bo:31982 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:molecularWeight "18373.03"^^xsd:string ; + sybio:pI "5.251228"^^xsd:string ; + sybio:productType "pe : putative enzyme"^^xsd:string ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "10088"@en . + +bo:25486 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "reversible"@en ; + rdfs:label "all-trans-Retinal 11-cis-trans-isomerase"@en , "C00376 <=> C02110"@en , "cpd:C02110 <=> cpd:C02110"@en ; + sybio:accession "RN:R02126"^^xsd:string ; + sybio:catalyzingClass bo:25487 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11749 ; + tawny:name "25486"@en . + bo:10176 a owl:NamedIndividual , sybio:Protein , bo:412 ; rdfs:comment "BSU18770;cysteine and O-acetyl serine efflux permease"@en , "Uncharacterized transporter yoaV;"@en ; rdfs:label "yoaV"@en , "CyeA"@en , "YoaV"@en , "BSU18770"@en ; @@ -469927,15 +469937,17 @@ bo:10176 a owl:NamedIndividual , sybio:Protein , bo:412 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10176"@en . -bo:25486 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "reversible"@en ; - rdfs:label "all-trans-Retinal 11-cis-trans-isomerase"@en , "C00376 <=> C02110"@en , "cpd:C02110 <=> cpd:C02110"@en ; - sybio:accession "RN:R02126"^^xsd:string ; - sybio:catalyzingClass bo:25487 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11749 ; - tawny:name "25486"@en . +bo:25574 a owl:Class , owl:NamedIndividual , sybio:EC ; + rdfs:comment "parsed ec from reaction file"@en ; + rdfs:label "2.7.8.15"@en ; + rdfs:subClassOf sybio:EC ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "2.7.8.15"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "25574"@en . bo:10264 a sybio:Protein , owl:NamedIndividual , bo:1373 ; rdfs:comment "Protease prsW"@en , "BSU22940;protease required for RsiW anti-sigma(W) degradation;"@en ; @@ -469955,17 +469967,17 @@ bo:10264 a sybio:Protein , owl:NamedIndividual , bo:1373 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10264"@en . -bo:25574 a owl:Class , owl:NamedIndividual , sybio:EC ; +bo:25662 a owl:NamedIndividual , sybio:EC , owl:Class ; rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "2.7.8.15"@en ; + rdfs:label "3.2.1.76"@en ; rdfs:subClassOf sybio:EC ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.7.8.15"^^xsd:string ; + owl:hasValue "3.2.1.76"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25574"@en . + tawny:name "25662"@en . bo:10352 a bo:217 , owl:NamedIndividual , sybio:Protein ; rdfs:comment "putative methyltransferase;BSU27180;"@en , "Putative methyltransferase yrhH"@en ; @@ -469985,18 +469997,6 @@ bo:10352 a bo:217 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "10352"@en . -bo:25662 a owl:NamedIndividual , sybio:EC , owl:Class ; - rdfs:comment "parsed ec from reaction file"@en ; - rdfs:label "3.2.1.76"@en ; - rdfs:subClassOf sybio:EC ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.2.1.76"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "25662"@en . - bo:6669 a sybio:TF , owl:NamedIndividual ; rdfs:comment "putative transcriptional regulator (Lrp/AsnC family)"@en ; rdfs:label "YezC"@en , "BSU06540"@en ; @@ -470226,25 +470226,6 @@ bo:11093 a owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "11093"@en . -bo:11181 a bo:1024 , sybio:Protein , owl:NamedIndividual ; - rdfs:comment "alkyl hydroperoxide reductase (small subunit);BSU40090"@en , "Alkyl hydroperoxide reductase subunit C"@en ; - rdfs:label "BSU40090"@en , "ahpC"@en , "AhpC"@en ; - sybio:AA "MSLIGKEVLPFEAKAFKNGEFIDVTNEDLKGQWSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEKISKITYAMIGDPSQTISRNFDVLDEETGLADRGTFIIDPDGVIQTVEINAGGIGRDASNLVNKVKAAQYVRQNPGEVCPAKWEEGGETLTPSLDLVGKI"@en ; - sybio:accession "BSU40090"^^xsd:string , "P80239"^^xsd:string ; - sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32217 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasFunction , , , ; - sybio:hasRole "4.2 : Detoxification"^^xsd:string ; - sybio:localisation "2 : Cytoplasmic"^^xsd:string ; - sybio:molecularWeight "20626.31"^^xsd:string ; - sybio:pI "4.48069"^^xsd:string ; - sybio:productType "e : enzyme"^^xsd:string ; - sybio:relatedTo bo:11182 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11181"@en . - bo:26491 a owl:NamedIndividual , sybio:Protein , bo:1411 ; rdfs:comment "glucose-6-phosphate 1-dehydrogenase;BSU23850"@en , "Glucose-6-phosphate 1-dehydrogenase;derived protein"@en ; rdfs:label "Zwf"@en , "YqjJ"@en , "zwf"@en , "BSU23850"@en ; @@ -470264,13 +470245,32 @@ bo:26491 a owl:NamedIndividual , sybio:Protein , bo:1411 ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26491"@en . +bo:11181 a bo:1024 , sybio:Protein , owl:NamedIndividual ; + rdfs:comment "alkyl hydroperoxide reductase (small subunit);BSU40090"@en , "Alkyl hydroperoxide reductase subunit C"@en ; + rdfs:label "BSU40090"@en , "ahpC"@en , "AhpC"@en ; + sybio:AA "MSLIGKEVLPFEAKAFKNGEFIDVTNEDLKGQWSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEKISKITYAMIGDPSQTISRNFDVLDEETGLADRGTFIIDPDGVIQTVEINAGGIGRDASNLVNKVKAAQYVRQNPGEVCPAKWEEGGETLTPSLDLVGKI"@en ; + sybio:accession "BSU40090"^^xsd:string , "P80239"^^xsd:string ; + sybio:biologicalProcess "16.8 : Protect"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32217 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasFunction , , , ; + sybio:hasRole "4.2 : Detoxification"^^xsd:string ; + sybio:localisation "2 : Cytoplasmic"^^xsd:string ; + sybio:molecularWeight "20626.31"^^xsd:string ; + sybio:pI "4.48069"^^xsd:string ; + sybio:productType "e : enzyme"^^xsd:string ; + sybio:relatedTo bo:11182 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11181"@en . + a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates and 3' hydroxyls. Cleavage is dependent on the presence in the DNA of a specific recognition site; cleavage occurs at or very near this recognition site."@en ; rdfs:label "Type II site-specific deoxyribonuclease"@en , "Type II restriction enzyme"@en , "GO:0009036"@en ; rdfs:subClassOf sybio:MolecularFunction , ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.21.4-RXN"^^xsd:string ; + owl:hasValue "3.1.21.4"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -470278,7 +470278,7 @@ bo:26491 a owl:NamedIndividual , sybio:Protein , bo:1411 ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "3.1.21.4"^^xsd:string ; + owl:hasValue "3.1.21.4-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -470791,23 +470791,6 @@ bo:26278 a bo:188 , owl:NamedIndividual , sybio:Protein ; sybio:taxId "[224308, 1423]"@en ; tawny:name "26278"@en . -bo:11056 a owl:NamedIndividual , sybio:Protein ; - rdfs:comment "conserved hypothetical protein;BSU35130"@en , "Uncharacterized protein yvlA"@en ; - rdfs:label "BSU35130"@en , "YvlA"@en , "yvlA"@en ; - sybio:AA "LNRNQAIIASLCYFSVFIAPIIVPIVAYFVVNEKETKRHAIRSLISHIVPFVGWLFLFIALLGGAVAIDGDSLLPVFVIIGGAVIYFLVVIGIIIWNVIQGIKVLRAA"@en ; - sybio:accession "BSU35130"^^xsd:string , "O34322"^^xsd:string ; - sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; - sybio:encodedBy bo:32095 ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:localisation "1 : Unknown"^^xsd:string ; - sybio:locatedIn , , ; - sybio:molecularWeight "11802.825"^^xsd:string ; - sybio:pI "9.430977"^^xsd:string ; - sybio:productType "o : ORF of unknown function"^^xsd:string ; - sybio:relatedTo bo:11126 ; - sybio:taxId "[224308, 1423]"@en ; - tawny:name "11056"@en . - bo:26366 a sybio:Protein , owl:NamedIndividual , bo:1395 , bo:254 , bo:253 , bo:1189 ; rdfs:comment "purine nucleoside phosphorylase;BSU23490;;BSU16690;polynucleotide phosphorylase (PNPase)"@en , "Polyribonucleotide nucleotidyltransferase;Purine nucleoside phosphorylase 1;derived protein"@en ; rdfs:label "ComR"@en , "pupG"@en , "BSU23490"@en , "YqkO"@en , "BSU16690"@en , "Pnp"@en , "pnpA"@en , "punA"@en , "PupG"@en , "PunA"@en , "pnp"@en , "PnpA"@en ; @@ -470829,6 +470812,23 @@ bo:26366 a sybio:Protein , owl:NamedIndividual , bo:1395 , sybio:taxId "[224308, 1423]"@en ; tawny:name "26366"@en . +bo:11056 a owl:NamedIndividual , sybio:Protein ; + rdfs:comment "conserved hypothetical protein;BSU35130"@en , "Uncharacterized protein yvlA"@en ; + rdfs:label "BSU35130"@en , "YvlA"@en , "yvlA"@en ; + sybio:AA "LNRNQAIIASLCYFSVFIAPIIVPIVAYFVVNEKETKRHAIRSLISHIVPFVGWLFLFIALLGGAVAIDGDSLLPVFVIIGGAVIYFLVVIGIIIWNVIQGIKVLRAA"@en ; + sybio:accession "BSU35130"^^xsd:string , "O34322"^^xsd:string ; + sybio:elementOf "http://www.bacillondex.org/cv/BacilluScope:GOAEBI:String"@en ; + sybio:encodedBy bo:32095 ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:localisation "1 : Unknown"^^xsd:string ; + sybio:locatedIn , , ; + sybio:molecularWeight "11802.825"^^xsd:string ; + sybio:pI "9.430977"^^xsd:string ; + sybio:productType "o : ORF of unknown function"^^xsd:string ; + sybio:relatedTo bo:11126 ; + sybio:taxId "[224308, 1423]"@en ; + tawny:name "11056"@en . + bo:26454 a bo:1355 , sybio:Protein , owl:NamedIndividual ; rdfs:comment "3-phosphoshikimate 1-carboxyvinyltransferase;;derived protein"@en , "BSU22600;3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvoylshikimate-3-phosphate synthase)"@en ; rdfs:label "AroE"@en , "aroE"@en , "BSU22600"@en ; @@ -471118,14 +471118,14 @@ bo:13828 a sybio:Compound , owl:NamedIndividual ; a sybio:MolecularFunction , owl:Class , owl:NamedIndividual ; rdfs:comment "Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+."@en ; - rdfs:label "L-alpha-glycerophosphate dehydrogenase"@en , "NAD-L-glycerol-3-phosphate dehydrogenase"@en , "hydroglycerophosphate dehydrogenase"@en , "NADH-dihydroxyacetone phosphate reductase"@en , "glycerol-3-phosphate dehydrogenase"@en , "NAD-dependent glycerol-3-phosphate dehydrogenase"@en , "alpha-glycerol phosphate dehydrogenase"@en , "NAD-dependent glycerol phosphate dehydrogenase"@en , "GO:0004367"@en , "L-alpha-glycerol phosphate dehydrogenase"@en , "L-glycerol phosphate dehydrogenase"@en , "alpha-glycerophosphate dehydrogenase"@en , "NAD-alpha-glycerophosphate dehydrogenase"@en , "glycerophosphate dehydrogenase"@en , "glycerol-3-phosphate dehydrogenase (NAD+)"@en , "glycerol 1-phosphate dehydrogenase"@en , "NAD-linked glycerol 3-phosphate dehydrogenase"@en , "glycerol phosphate dehydrogenase"@en , "L-glycerophosphate dehydrogenase"@en ; + rdfs:label "L-alpha-glycerophosphate dehydrogenase"@en , "NAD-L-glycerol-3-phosphate dehydrogenase"@en , "hydroglycerophosphate dehydrogenase"@en , "NADH-dihydroxyacetone phosphate reductase"@en , "glycerol-3-phosphate dehydrogenase"@en , "NAD-dependent glycerol-3-phosphate dehydrogenase"@en , "alpha-glycerol phosphate dehydrogenase"@en , "NAD-dependent glycerol phosphate dehydrogenase"@en , "GO:0004367"@en , "L-alpha-glycerol phosphate dehydrogenase"@en , "L-glycerol phosphate dehydrogenase"@en , "alpha-glycerophosphate dehydrogenase"@en , "NAD-alpha-glycerophosphate dehydrogenase"@en , "glycerol-3-phosphate dehydrogenase (NAD+)"@en , "glycerophosphate dehydrogenase"@en , "glycerol 1-phosphate dehydrogenase"@en , "NAD-linked glycerol 3-phosphate dehydrogenase"@en , "glycerol phosphate dehydrogenase"@en , "L-glycerophosphate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004367"^^xsd:string ; + owl:hasValue "1.1.1.8-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.8-RXN"^^xsd:string ; + owl:hasValue "GO:0004367"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -471185,7 +471185,7 @@ bo:13916 a owl:NamedIndividual , sybio:Compound ; rdfs:label "2-hydroxy-3-keto acid reductoisomerase"@en , "GO:0004455"@en , "isomeroreductase"@en , "alpha-keto-beta-hydroxylacyl reductoisomerase"@en , "3-dihydroxy-3-methylbutanoate:NADP+ oxidoreductase"@en , "ketol acid reductoisomerase"@en , "reductoisomerase"@en , "acetohydroxy acid isomeroreductase"@en , "acetolactate reductoisomerase"@en , "ketol-acid reductoisomerase"@en , "acetohydroxy acid reductoisomerase"@en , "dihydroxyisovalerate dehydrogenase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.86"^^xsd:string ; + owl:hasValue "ACETOLACTREDUCTOISOM-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -471193,7 +471193,7 @@ bo:13916 a owl:NamedIndividual , sybio:Compound ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ACETOLACTREDUCTOISOM-RXN"^^xsd:string ; + owl:hasValue "1.1.1.86"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -471499,11 +471499,11 @@ bo:14833 a owl:Class , owl:NamedIndividual , sybio:KOEN ; rdfs:label "PTS-GUT-EIIB"@en , "SRLE"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3732"^^xsd:string ; + owl:hasValue "0008982"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0008982"^^xsd:string ; + owl:hasValue "COG3732"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -471655,21 +471655,21 @@ bo:21873 a sybio:Reaction , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "2.5.1.61"^^xsd:string ; + owl:hasValue "OHMETHYLBILANESYN-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0004418"^^xsd:string ; + owl:hasValue "2.5.1.61"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "OHMETHYLBILANESYN-RXN"^^xsd:string ; + owl:hasValue "GO:0004418"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en . -bo:21961 a owl:NamedIndividual , owl:Class , sybio:EC ; +bo:21961 a owl:Class , owl:NamedIndividual , sybio:EC ; rdfs:comment "parsed ec from reaction file"@en ; rdfs:label "1.5.1.7"@en ; rdfs:subClassOf sybio:EC ; @@ -471718,11 +471718,11 @@ bo:15574 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:label "E2.3.1.37"@en , "ALAS"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003870"^^xsd:string ; + owl:hasValue "COG0156"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0156"^^xsd:string ; + owl:hasValue "0003870"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -471766,11 +471766,11 @@ bo:16492 a sybio:KOEN , owl:Class , owl:NamedIndividual ; rdfs:label "E1.2.1.19"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG1012"^^xsd:string ; + owl:hasValue "0019145"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0019145"^^xsd:string ; + owl:hasValue "COG1012"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -472020,7 +472020,7 @@ bo:21748 a owl:NamedIndividual , sybio:Reaction ; rdfs:label "GO:0008797"@en , "L-aspartase"@en , "fumaric aminase"@en , "L-aspartate ammonia-lyase"@en , "aspartase"@en , "aspartate ammonia-lyase"@en ; rdfs:subClassOf sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "ASPARTASE-RXN"^^xsd:string ; + owl:hasValue "4.3.1.1"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -472028,7 +472028,7 @@ bo:21748 a owl:NamedIndividual , sybio:Reaction ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "4.3.1.1"^^xsd:string ; + owl:hasValue "ASPARTASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -472099,7 +472099,7 @@ bo:29080 a sybio:CDS , owl:NamedIndividual ; rdfs:label "phosphoribomutase"@en , "D-ribose 1 5-phosphomutase"@en , "GO:0008973"@en , "alpha-D-glucose-1 6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase"@en , "alpha-D-ribose 1 5-phosphomutase"@en , "deoxyribomutase"@en , "phosphodeoxyribomutase"@en , "phosphopentomutase"@en , "deoxyribose phosphomutase"@en ; rdfs:subClassOf , sybio:MolecularFunction ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0008973"^^xsd:string ; + owl:hasValue "5.4.2.7"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; @@ -472107,7 +472107,7 @@ bo:29080 a sybio:CDS , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "5.4.2.7"^^xsd:string ; + owl:hasValue "GO:0008973"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -472167,11 +472167,11 @@ bo:15625 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "CYSM"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0031"^^xsd:string ; + owl:hasValue "0004124"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0004124"^^xsd:string ; + owl:hasValue "COG0031"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; @@ -472202,11 +472202,11 @@ bo:16279 a owl:Class , sybio:KOEN , owl:NamedIndividual ; rdfs:label "purine nucleotide anabolism"@en , "purine nucleotide synthesis"@en , "purine nucleotide biosynthesis"@en , "GO:0006164"@en , "purine nucleotide formation"@en , "purine nucleotide biosynthetic process"@en ; rdfs:subClassOf , , sybio:BiologicalProcess ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "DENOVOPURINE2-PWY"^^xsd:string ; + owl:hasValue "GO:0006164"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006164"^^xsd:string ; + owl:hasValue "DENOVOPURINE2-PWY"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -472261,6 +472261,14 @@ bo:28038 a owl:NamedIndividual , sybio:Shim ; sybio:upstreamOf bo:28037 ; tawny:name "28038"@en . +bo:4890 a sybio:Operon , owl:NamedIndividual ; + rdfs:label "mecA"@en ; + sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:hasPart bo:31261 ; + sybio:operonGenes "mecA"@en ; + tawny:name "4890"@en . + bo:16543 a owl:NamedIndividual , sybio:KOEN , owl:Class ; rdfs:comment "phosphinothricin biosynthesis protein PhpF"@en ; rdfs:label "PHPF"@en ; @@ -472274,14 +472282,6 @@ bo:16543 a owl:NamedIndividual , sybio:KOEN , owl:Class ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K12908"@en ; tawny:name "16543"@en . -bo:4890 a sybio:Operon , owl:NamedIndividual ; - rdfs:label "mecA"@en ; - sybio:elementOf "http://www.bacillondex.org/cv/DBTBS"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:hasPart bo:31261 ; - sybio:operonGenes "mecA"@en ; - tawny:name "4890"@en . - bo:28126 a owl:NamedIndividual , sybio:Shim ; rdfs:label "motA_RBS_upstream"@en ; sybio:NA "AGCTAGTAA"^^xsd:string ; @@ -472302,16 +472302,6 @@ bo:16631 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K05597"@en ; tawny:name "16631"@en . -bo:22489 a owl:NamedIndividual , sybio:Reaction ; - rdfs:comment "multi-step reaction (ligating L-phenylalanine and [enzyme]-thiol,epimerizing and thioester-hydrolysing) - reversible"@en ; - rdfs:label "C00002 + C00079 + C00001 <=> C00020 + C00013 + C02265"@en , "L-Phenylalanine racemase (ATP-hydrolysing)"@en , "cpd:C00079 <=> cpd:C00079"@en ; - sybio:accession "RN:R00686"^^xsd:string ; - sybio:catalyzingClass bo:22490 ; - sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - sybio:memberOf bo:11610 ; - tawny:name "22489"@en . - bo:28214 a owl:NamedIndividual , sybio:RBS ; rdfs:label "dnaJ_RBS"@en ; sybio:NA "ATTCGGGAGAGTGAAGCGAG"^^xsd:string ; @@ -472322,6 +472312,16 @@ bo:28214 a owl:NamedIndividual , sybio:RBS ; sybio:upstreamOf bo:31805 ; tawny:name "28214"@en . +bo:22489 a owl:NamedIndividual , sybio:Reaction ; + rdfs:comment "multi-step reaction (ligating L-phenylalanine and [enzyme]-thiol,epimerizing and thioester-hydrolysing) - reversible"@en ; + rdfs:label "C00002 + C00079 + C00001 <=> C00020 + C00013 + C02265"@en , "L-Phenylalanine racemase (ATP-hydrolysing)"@en , "cpd:C00079 <=> cpd:C00079"@en ; + sybio:accession "RN:R00686"^^xsd:string ; + sybio:catalyzingClass bo:22490 ; + sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + sybio:memberOf bo:11610 ; + tawny:name "22489"@en . + bo:22577 a sybio:Reaction , owl:NamedIndividual ; rdfs:comment "spontaneous - reversible"@en ; rdfs:label "C06598 <=> C06602 + C01327"@en , "cpd:C06598 <=> cpd:C06598"@en ; @@ -472553,27 +472553,27 @@ bo:17372 a owl:NamedIndividual , sybio:KOGE ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K00116"@en ; tawny:name "17372"@en . -bo:483 a owl:Class ; - rdfs:label "COG3665"@en ; - rdfs:subClassOf bo:176 , sybio:COG ; +bo:1215 a owl:Class ; + rdfs:label "COG0208"@en ; + rdfs:subClassOf bo:185 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG3665"^^xsd:string ; + owl:hasValue "COG0208"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "483"@en . + tawny:name "1215"@en . -bo:1215 a owl:Class ; - rdfs:label "COG0208"@en ; - rdfs:subClassOf bo:185 , sybio:COG ; +bo:483 a owl:Class ; + rdfs:label "COG3665"@en ; + rdfs:subClassOf bo:176 , sybio:COG ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0208"^^xsd:string ; + owl:hasValue "COG3665"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "1215"@en . + tawny:name "483"@en . bo:17460 a sybio:KOPR , owl:NamedIndividual ; rdfs:comment "PAH dioxygenase small subunit [EC:1.13.11.-]"@en ; @@ -472584,17 +472584,6 @@ bo:17460 a sybio:KOPR , owl:NamedIndividual ; sybio:url "http://www.kegg.jp/dbget-bin/www_bget?K11943+K11944"@en ; tawny:name "17460"@en . -bo:571 a owl:Class ; - rdfs:label "COG2202"@en ; - rdfs:subClassOf bo:210 , sybio:COG ; - rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG2202"^^xsd:string ; - owl:onProperty sybio:accession - ] ; - sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; - sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; - tawny:name "571"@en . - bo:29043 a sybio:CDS , owl:NamedIndividual ; rdfs:comment "BSU40580"@en ; rdfs:label "BSU40580"@en , "yybN"@en ; @@ -472634,6 +472623,17 @@ bo:1303 a owl:Class ; sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; tawny:name "1303"@en . +bo:571 a owl:Class ; + rdfs:label "COG2202"@en ; + rdfs:subClassOf bo:210 , sybio:COG ; + rdfs:subClassOf [ a owl:Restriction ; + owl:hasValue "COG2202"^^xsd:string ; + owl:onProperty sybio:accession + ] ; + sybio:elementOf "http://www.bacillondex.org/cv/COG"@en ; + sybio:evidence "http://www.bacillondex.org/evidenceType/IMPD"@en ; + tawny:name "571"@en . + bo:29131 a sybio:CDS , owl:NamedIndividual ; rdfs:label "BSU16820"@en ; sybio:accession "BSU16820"^^xsd:string ; @@ -472744,59 +472744,59 @@ bo:16418 a owl:NamedIndividual , sybio:KOGE ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "469942 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "GO:0006303"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "547694 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "507606 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "526442 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "536623 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "592612 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "73889 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "536623 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "526442 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "517590 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "568507 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "581718 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "547694 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "448826 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "542350 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "542350 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "531249 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "531249 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "581718 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "73889 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "448826 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "507606 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "517590 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "568507 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; + owl:hasValue "592612 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "GO:0006303"^^xsd:string ; + owl:hasValue "469942 \"Nonhomologous End-joining (NHEJ)\""^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -473054,11 +473054,11 @@ bo:5682 a sybio:Operon , owl:NamedIndividual ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "MYO-INOSITOL-2-DEHYDROGENASE-RXN"^^xsd:string ; + owl:hasValue "1.1.1.18"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "1.1.1.18"^^xsd:string ; + owl:hasValue "MYO-INOSITOL-2-DEHYDROGENASE-RXN"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/GO:GOAEBI"@en ; @@ -473629,11 +473629,11 @@ bo:19081 a sybio:KOEN , owl:NamedIndividual , owl:Class ; rdfs:label "ERG6"@en , "SMT1"@en , "E2.1.1.41"@en ; rdfs:subClassOf sybio:KOEN ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "COG0500"^^xsd:string ; + owl:hasValue "0003838"^^xsd:string ; owl:onProperty sybio:accession ] ; rdfs:subClassOf [ a owl:Restriction ; - owl:hasValue "0003838"^^xsd:string ; + owl:hasValue "COG0500"^^xsd:string ; owl:onProperty sybio:accession ] ; sybio:elementOf "http://www.bacillondex.org/cv/KEGG"@en ;