diff --git a/previews/PR1153/.documenter-siteinfo.json b/previews/PR1153/.documenter-siteinfo.json new file mode 100644 index 0000000000..dbf3ad6e54 --- /dev/null +++ b/previews/PR1153/.documenter-siteinfo.json @@ -0,0 +1 @@ +{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-11-27T07:15:01","documenter_version":"1.5.0"}} \ No newline at end of file diff --git a/previews/PR1153/Boundaries/BoundaryFilePreparation/index.html b/previews/PR1153/Boundaries/BoundaryFilePreparation/index.html new file mode 100644 index 0000000000..fb2b979f07 --- /dev/null +++ b/previews/PR1153/Boundaries/BoundaryFilePreparation/index.html @@ -0,0 +1,60 @@ + +Preparation · Harmonie wiki
GitHub

Preparation of initial and boundary files

Introduction

HARMONIE can be coupled with external models as IFS, ARPEGE, HIRLAM. Internally it is possible to nest the different ALADIN/ALARO/AROME with some restrictions. In the following we describe the host initial and boundary files are generated depending on different configurations. Boundary file preparation basically includes two parts: forecast file fetching and boundary file generation.

The ECFLOW tasks for initial and boundary preparation

Boundary strategies

There are a number of ways to chose which forecast lengths you use as boundaries. The strategy is determined by BDSTRATEGY in ecf/config_exp.h and there are a number of strategies implemented.

  • available : Search for available files in BDDIR adn try to keep forecast consistency. This is ment to be used operationally since it will at least keep your run going, but with old boundaries, if no new boundaries are available.
  • simulate_operational : Mimic the behaviour of the operational runs using ECMWF 6h old boundaries.
  • same_forecast : Use all boundaries from the same forecast, start from analysis
  • analysis_only : Use only analyses as boundaries. Note that BDINT cannot be shorter than the frequency of the analyses.
  • latest : Use the latest possible boundary with the shortest forecast length
  • RCR_operational : Mimic the behaviour of the RCR runs, ie
  • 12h old boundaries at 00 and 12 and
  • 06h old boundaries at 06 and 18
  • jb_ensemble : Same as same_forecast but used for JB-statistics generation. With this you should export JB_ENS_MEMBER=some_number
  • eps_ec : ECMWF EPS members (on reduced Gaussian grid). It is only meaningful with ENSMSEL non-empty, i.e., ENSSIZE > 0

All the strategies are defined in scr/Boundary_strategy.pl. The script generates a file bdstrategy in your working directory that could look like:

 Boundary strategy
+
+       DTG: 2011090618
+        LL: 36
+     BDINT: 3
+   BDCYCLE: 6
+  STRATEGY: simulate_operational
+     BDDIR: /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/@YYYY@/@MM@/@DD@/@HH@
+HOST_MODEL: ifs
+INT_BDFILE: /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC@NNN@
+
+# The output bdstrategy file has the format of 
+# NNN|YYYYMMDDHH INT_BDFILE BDFILE BDFILE_REQUEST_METHOD 
+# where 
+# NNN        is the input hour
+# YYYYMMDDHH is the valid hour for this boundary
+# INT_BDFILE is the final boundary file
+# BDFILE                is the input boundary file
+# BDFILE_REQUEST_METHOD is the method to the request BDFILE from e.g. MARS, ECFS or via scp
+
+SURFEX_INI| /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/SURFXINI.lfi 
+000|2011090618 /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC000 /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/2011/09/06/12/fc20110906_12+006 MARS_umbrella -d 20110906 -h 12 -l 6 -t
+003|2011090621 /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC001 /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/2011/09/06/12/fc20110906_12+009 MARS_umbrella -d 20110906 -h 12 -l 9 -t
+...

Meaning that the if the boundary file is not found under BDDIR the command MARS_umbrella -d YYYYMMDD -h HH -l LLL -t BDDIR will be executed. A local interpretation could be to search for external data if your file is not on BDDIR. Like the example from SMHI:

 Boundary strategy
+
+       DTG: 2011090112
+        LL: 24
+     BDINT: 3
+   BDCYCLE: 06
+  STRATEGY: latest
+     BDDIR: /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/@YYYY@/@MM@/@DD@/@HH@
+HOST_MODEL: hir
+INT_BDFILE: /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC@NNN@
+ EXT_BDDIR: smhi_file:/data/arkiv/field/f_archive/hirlam/G05_60lev/@YYYY@@MM@/G05_@YYYY@@MM@@DD@@HH@00+@LLL@H00M
+EXT_ACCESS: scp
+
+# The output bdstrategy file has the format of 
+# NNN|YYYYMMDDHH INT_BDFILE BDFILE BDFILE_REQUEST_METHOD 
+# where 
+# NNN        is the input hour
+# YYYYMMDDHH is the valid hour for this boundary
+# INT_BDFILE is the final boundary file
+# BDFILE                is the input boundary file
+# BDFILE_REQUEST_METHOD is the method to the request BDFILE from e.g. MARS, ECFS or via scp
+
+# hh_offset is 0 ; DTG is  
+SURFEX_INI| /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/SURFXINI.lfi 
+000|2011090112 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC000 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/2011/09/01/12/fc20110901_12+000 scp smhi:/data/arkiv/field/f_archive/hirlam/G05_60lev/201109/G05_201109011200+000H00M 
+003|2011090115 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC001 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/2011/09/01/12/fc20110901_12+003 scp smhi:/data/arkiv/field/f_archive/hirlam/G05_60lev/201109/G05_201109011200+003H00M

In this example an scp from smhi will be executed if the expected file is not in BDDIR. There are a few environment variables that one can play with in sms/confi_exp.h that deals with the initial and boundary files

  • HOST_MODEL : Tells the origin of your boundary data * ifs : ecmwf data * hir : hirlam data * ald : Output from aladin physics, this also covers arpege data after fullpos processing. * ala : Output from alaro physics * aro : Output from arome physics
  • BDINT : Interval of boundaries in hours
  • BDLIB : Name of the forcing experiment. Set
    • ECMWF to use MARS data
    • RCRa to use RCRa data from ECFS
    • Other HARMONIE/HIRLAM experiment
  • BDDIR : The path to the boundary file. In the default location BDDIR=$HM_DATA/${BDLIB}/archive/@YYYY@/@MM@/@DD@/@HH@ the file retrieved from e.g. MARS will be stored in a separate directory. On could also consider to configure this so that all the retrieved files are located in your working directory $WRK. Locally this points to the directory where you have all your common boundary HIRLAM or ECMWF files.
  • INT_BDFILE : is the full path of the interpolated boundary files. The default setting is to let the boundary file be removed by directing it to $WRK.
  • INT_SINI_FILE : The full path of the initial surfex file.

There are a few optional environment variables that could be used that are not visible in config_exp.h

  • EXT_BDDIR : External location of boundary data. If not set rules are depending on HOST_MODEL
  • EXT_ACCESS : Method for accessing external data. If not set rules are depending on HOST_MODEL
  • BDCYCLE : Assimilation cycle interval of forcing data, default is 6h.

More about this can be bounds in the Boundary_strategy.pl script.

The bdstrategy file is parsed by the script ExtractBD.

  • scr/ExtractBD Checks if data are on BDDIR otherwise copy from EXT_BDDIR. The operation performed can be different depending on HOST and HOST_MODEL. IFS data at ECMWF are extracted from MARS, RCR data are copied from ECFS.
    • Input parameters: Forecast hour
    • Executables: none.

In case data should be retrieved from MARS there is also a stage step. When calling MARS with the stage command we ask MARS to make sure data are on disk. In HARMONIE we ask for all data for one day of r forecasts ( normally four cycles ) at the time.

Near real time aerosols

The use of near real time aerosols require the presence of aerosol fields in the boundary files.

  • BDAERO : Origin of the aerosol fields
    • none : no aerosols (default configuration)
    • cams : aerosol from CAMS.

A bdstrategy_cams file is generated. After the data is retrieved, the files are merge with the files from the HOST_MODEL to get the final boundary conditions files.

Initial and Boundary file generation

To be able to start the model we need the variables defining the model state.

  • T,U,V,PS in spectral space
  • Q in gridpoint or spectral space

Optional:

  • $Q_l$, $Q_i$, $Q_r$, $Q_g$, $Q_s$, $Q_h$
  • TKE

For the surface we need the different state variables for the different tiles. The scheme selected determines the variables.

Boundary files (coupling files) for HARMONIE are prepared in two different ways depending on the nesting procedure defined by HOST_MODEL.

Using gl

If you use data from HIRLAM or ECMWF gl will be called to generate boundaries. The generation can be summarized in the following steps:

  • Setup geometry and what kind of fields to read depending on HOST_MODEL
  • Read the necessary climate data from a climate file
  • Translate and interpolate the surface variables horizontally if the file is to be used as an initial file. All interpolation respects land sea mask properties. The soil water is not interpolated directly but interpolated using the Soil Wetness Index to preserve the properties of the soil between different models. The treatment of the surface fields is only done for the initial file.
  • Horizontal interpolation of upper air fields as well as restaggering of winds.
  • Vertical interpolation using the same method (etaeta) as in HIRLAM
    • Conserve boundary layer structure
    • Conserve integrated quantities
  • Output to an FA file ( partly in spectral space )

gl is called by the script scr/gl_bd where we make different choices depending on PHYSICS and HOST_MODEL

When starting a forecast there are options to whether e.g. cloud properties and TKE should be read from the initial/boundary file through NREQIN and NCOUPLING. At the moment these fields are read from the initial file but not coupled to. gl reads them if they are available in the input files and sets them to zero otherwise. For a Non-Hydrostatic run the non-hydrostatic pressure departure and the vertical divergence are demanded as an initial field. The pressure departure is by definition zero if you start from a non-hydrostatic mode and since the error done when disregarding the vertical divergence is small it is also set to zero in gl. There are also a choice in the forecast model to run with Q in gridpoint or in spectral space.

It's possible to use an input file without e.g. the uppermost levels. By setting LDEMAND_ALL_LEVELS=.FALSE. the missing levels will be ignored. This is used at some institutes to reduce the amount of data transferred for the operational runs.

Using fullpos

If you use data generated by HARMONIE you will use fullpos to generate boundaries and initial conditions. Here we will describe how it's implemented in HARMONIE but there are also good documentation on the gmapdoc site.

In HARMONIE it is done by the script scr/E927. It contains the following steps:

  • Fetcht climate files. Fullpos needs a climate file and the geometry definition for both the input and output domains.

  • Set different moist variables in the namelists depending if your run AROME or ALADIN/ALARO.

  • Check if input data has Q in gridpoint or spectral space.

  • Demand NH variables if we run NH.

  • Determine the number of levels in the input file and extract the correct levels from the definition in scr/Vertical_level.pl

  • Run fullpos

E927 is also called from 4DVAR when the resolution is changed between the inner and outer loops.

Generation of initial data for SURFEX

For SURFEX we have to fill the different tiles with correct information from the input data. This is called the PREP step in the SURFEX context. scr/Prep_ini_surfex creates an initial SURFEX file from an FA file if you run with SURFACE=surfex.

Read more about SURFEX

Reading SST/SIC information

It is possible to update sea-surface temperature (SST) and sea-ice concentration (SIC) from the LBC/coupling files. Since June 2018 and Cycle 45r1, ECMWF's IFS has used interactive ocean and sea ice components. It has been shown that use of these components "... can significantly improve SST predictions in Europe, and as a result, predictions of near-surface air temperature". The use of SST and SIC as surface boundary conditions has the potential to improve the quality of LAM NWP forecasts. See the ECMWF Newsletter article https://www.ecmwf.int/en/newsletter/156/news/effects-ocean-coupling-weather-forecasts describing examples of the coupling improved IFS forecasts in the seas near Europe.

The reading of these data is controlled by the SSTSIC_UPD switch in ecf/config_exp.h. With SSTSIC_UPD=no (default) SST/SIC are read at analysis time and not updated during the forecast. With SSTSIC_UPD=yes SST and SIC are read by the model from files created by the Interpol_sst_mll task in the Boundaries ecFlow family.

Data preparation

The ecf/Interpol_sst_mll.ecf task reads the bdstrategy file described above and calls the scr/Interpol_sst_mll script to "Interpolate SST/SIC from various sources to the model geometry for given MLL & INFILE". The script uses gl (with -sst3 option set) to carry out the interpolation.

Interpol_sst_mll inputDescription
-hCommnand-line option. Model forecast hour
-iCommnand-line option. Input file name
SST_SOURCESEnvironment variable. External SST source used to set gl namelist
EXT_SST_SIC_$LLLHard-coded. Output filename expected by the code (LLL is the forecast length).

The code

The reading of the SST/SIC input files (EXT_SST_SIC_$LLL) is controlled in the scripts by the SSTSIC_UPD environment variable. With it set to yes, the following NAMMCC namelist entries are set to .TRUE.:

&NAMMCC
+  LMCC01_MSE=.TRUE.,
+  LMCCECSST=.TRUE.,
+/

From src/arpifs/module/yommcc.F90:

! LMCC01_MSE = .T.   ===> THE CLIM.FIELD(S) ARE READ IN LBC FILE AND USED IN SURFEX
+ :
+! LMCCECSST =.T. ===> SST FROM ECMWF (SST-ANA COMB with surf temp over seaice)
+!           =.F. ===> SST FROM SURFTEMPERATURE
diff --git a/previews/PR1153/Build/Build_with_cmake/index.html b/previews/PR1153/Build/Build_with_cmake/index.html new file mode 100644 index 0000000000..7d0f24681f --- /dev/null +++ b/previews/PR1153/Build/Build_with_cmake/index.html @@ -0,0 +1,103 @@ + +CMake · Harmonie wiki
GitHub

Build with CMake

Background

CMake is a build system generator supporting multiple build systems and programming languages, specifically Fortran is a first-class citizen there, allowing, for example, out-of-the-box handling of the inter-module dependencies. A build system generator there means that description of the build procedure written in the CMake-script language is used by the cmake tool to generate the actual build system, for example using Unix Makefiles or Ninja generator. Thus, all modifications should be performed on the CMake-script level and not within the generated build system as these changes will be overwritten when re-running cmake at some point.

Why providing yet another alternative for building HARMONIE-AROME? Well, makeup does a very good job building the system, however it's an in-house solution which has a number of limitations:

  • makeup is an in-house build system, so there are components that require more maintenance compared to a standardized build tool
  • makeup uses a considerable number of sequential steps, which increase the total build time
  • the configure step takes quite some time, although in some cases it can be skipped, but users have to remember when they must re-run configure and this dependency is not enforced by makeup
  • not all the dependencies are tracked by makeup, for example updating configure files does not trigger a re-build

In an attempt to fix these limitation of makeup, CMake was chosen as an alternative. CMake has a mature Fortran support and improves upon some shortcomings of makeup with little effort (well, it obviously has its own fair share of quirks, but that's a different story...). Additionally, using CMake allows us to enforce usage requirements and dependencies between different components of HARMONIE-AROME, for example, it's a good idea to ensure that SURFEX routines do not directly call cloud microphysics functions. Currently makeup does not enforce these boundaries and this task is left to the developers who implement the new code. Of course, something like this can also be implemented with makeup, but it would require considerable development efforts.

Getting started with CMake

Selecting the CMake-based build system when installing HARMONIE-AROME

If all the config files are available, building HARMONIE-AROME with CMake should be as simple as setting the BUILD_WITH variable when invoking Harmonie:

config-sh/Harmonie install BUILD_WITH=cmake

or alternatively, setting the desired option in ecf/config_exp.h.

Building HARMONIE-AROME with CMake from the command line

Sometimes calling Harmonie install is not the best choice and one might want to compile the code from the command line. In this case compilation of HARMONIE-AROME with CMake consists of three individual steps:

  1. compiling the auxiliary libraries (gribex and such)
  2. compiling the main code of HARMONIE-AROME
  3. optionally, compile some additional tools (for example, gl)

1. Compiling the auxiliary libraries

This step is rather straightforward, assuming that HARMONIE-AROME code is located under the path stored in the HM_LIB environment variable one can adapt the following snippet to compile all the required libraries:

CMAKE_FLAGS="-DCONFIG_FILE=<path to your JSON config>"
+INSTALL_DIR="<directory where the auxiliary libraries should be installed>"
+
+AUX_LIBS='bufr_405 gribex_370 rgb_001 dummies_006/mpidummy'
+for project in $AUX_LIBS; do
+  echo "Compiling $project"
+  current_project_dir=$HM_LIB/util/auxlibs/$project
+  current_build_dir="build-`echo $project | sed 's|/|-|g'`"
+
+  mkdir -p $current_build_dir && cd $current_build_dir
+
+  # CMake build type can be changed to Debug, if needed
+  cmake $current_project_dir -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR $CMAKE_FLAGS
+  # Here -j tells CMake how many parallel compilation processes to use
+  cmake --build . --target install -j16
+
+  cd ..
+done

If a specific config file is not there, you can try your luck with using generic config files provided for different compiler types. To do so, just drop the -DCONFIG_FILE from the list of CMake command line arguments and CMake will try to load a suitable configuration file, if available.

2. Compiling the main code of HARMONIE-AROME

Following the procedure described in the previous step, one can use a similar approach to compile the main code (here, one of the generic configuration files is used, of course it can be replaced with a different one or dropped but it should be the same config file which was used to compile auxiliary libraries):

mkdir build && cd build
+# Configure and generate the build system
+cmake $HM_LIB/src \
+  -G Ninja # Use Ninja to build HARMONIE-AROME, drop to build with Makefiles
+  -DCMAKE_BUILD_TYPE=Release \
+  -DCONFIG_FILE=$HM_LIB/util/util/cmake/config.GNU.cmake \
+  -Dbufr_DIR=$INSTALL_DIR/lib/cmake/bufr \
+  -Dgribex_DIR=$INSTALL_DIR/lib/cmake/gribex \
+  -Drgb_DIR=$INSTALL_DIR/lib/cmake/rgb \
+  -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR
+
+# Build and install HARMONIE-AROME
+cmake --build . --target install -j16
Note

Obviously, when compiling from command line, additional command line arguments might be provided to CMake at the configure step as needed. However, a preferred solution is to use a configuration file to handle as much of the machine-specific details as possible.

3. Compiling the tools

The approach is the same as with the main code, however, you might want to add -Dharmonie_DIR=$INSTALL_DIR/lib/cmake/harmonie if the tool in question needs HARMONIE-AROME libraries for compilation.

Configuration files

Configuration files, similarly to makeup, are used to provide compilation flags, define external libraries to use when compiling the code et cetera. Thus, having a correct configuration file is one of the key elements of successful building HARMONIE-AROME. The CMake-based build system of HARMONIE-AROME uses configuration files written in JSON format. The JSON configuration files use the following naming convention: config.PLATFORM.COMPILER.json where PLATFORM is the name of your PC/HPC/OS and COMPILER is the compilier identification as specified by CMake in https://cmake.org/cmake/help/latest/variable/CMAKELANGCOMPILER_ID.html. JSON was chosen to make these files more declarative and, hopefully, easier to maintain and modify than plain CMake-script-based files would be.

The main config file, which is used to build auxiliary libraries and the main HARMONIE-AROME code should be placed under util/cmake/config directory. This file has a following top-level structure:

{
+  "build_tools":[],
+  "dependencies":[],
+  "programs":[],
+  "configure":{},
+  "compile":[],
+  "compile_single":[],
+  "compile_double":[],
+  "custom_compile":{},
+  "link":[]
+}

there all the sections except configure, custom_compile and link are mandatory. In the following a detailed description of all the config file section is provided.

The build_tools section

This section lists the external tools required for compiling HARMONIE-AROME, excluding compilers. Currently, this section should always contain the two following entries: FLEX and BISON, but in future this list might be extended. So, currently this section is always defined as:

"build_tools":["BISON", "FLEX"]

The dependencies section

This section provides a list of external (external here means "not found within the src directory of HARMONIE-AROME", so, for example, gribex is also an external library for CMake build) libraries required to compile and link HARMONIE-AROME code. Since finding a correct library can be a tricky task, this section allows a number of options for specifying external dependencies:

  • You can completely rely on CMake and delegate it all the work for finding a dependency. In this case, a dependency is added as a simple string to the dependencies section, for example:

    "dependencies":["OpenMP", "LAPACK"]

    This option is for packages like OpenMP which do not involve finding libraries located in unusual places as often happens when using environment modules.

  • You can still rely on CMake to find the package, but provide a bit of detail on how to find it. In this case a dependency is added as a JSON object of the following form (using the NetCDF library as an example):

    {
+  "pkg":"NetCDF",
+  "use_cmake_config":false,
+  "components":["C","Fortran"],
+  "hints":["$ENV{NETCDF_DIR}","$ENV{NETCDF_F_DIR}"],
+  "cmake":{"NETCDF_USE_DEFAULT_PATHS":true}
+}

    There the use_cmake_config field tells CMake which mechanism it should use to find the library in question. When use_cmake_config is set to true CMake will look for CMake configuration files installed with the library, which is a recommended option in modern CMake. Even though it's a recommended by the CMake authors option, not all the libraries provide CMake configuration files so just setting use_cmake_config to true does not work all the time (at least it works for the auxiliary libraries compiled with CMake). You might want to provide a -D<package name>_DIR=<path to CMake config files> as an argument to the cmake command when configuring the build if CMake fails to find a package.

    Another alternative is setting use_cmake_config to false, then CMake will try to find the required dependency using the hand-written scripts provided by the authors of CMake (or found under the util/cmake directory of HARMONIE-AROME). These scripts usually do quite some work trying to find a dependency and sometimes fail even if library is there, for example when it's located in a very unusual place or has an unexpected pkg-config name.

    When using "use_cmake_config":false one may add a components list, if only a language-specific version of the dependency is wanted. For example, having:

    {"pkg":"NetCDF", "use_cmake_config":false, "components":["C"]}

    CMake would not try to find the Fortran version of NetCDF library, which can be useful sometimes. Use this option of defining external dependencies for such libraries as MPI, which can have multiple vendors and subtle differences between libraries provided (for example CMake should be able to figure out the correct MPI libraries for both MPICH and Open-MPI).

    The hints list tells CMake which directories it should check when looking for a library.

    Note

    Elements of the hints list are simply added to the <PackageName>_ROOT CMake variable. If CMake's find_package(<PackageName>) does not use this variable providing hints would have no effect.

    Finally, the cmake section provides a key-value set of elements, which will be converted to corresponding CMake variables set before calling find_package(<PackageName>). Thus, it can be used to control the behaviour of find_package.

    Note

    Variables set in the cmake section are local to the current package and do not modify the global scope.

  • When nothing of the above works, you can provide all the flags manually. To do so, use the following form for a dependency entry:

    {
+  "pkg":"HDF5",
+  "raw_lib":{
+    "include":"$ENV{HDF5_DIR}/include",
+    "lib_directory":"$ENV{HDF5_DIR}/lib",
+    "lib":["-lhdf5hl_fortran", "-lhdf5_fortran", "-lhdf5_hl", "-lhdf5"]
+  }
+}

    where the raw_lib component provides all the needed include and link directories as well as the link libraries. If some some fields of the raw_lib object are unneeded they can be set to null:

    {"pkg":"rt", "raw_lib":{"include":null, "lib_directory":null, "lib":"-lrt"}}

    Note that all the members of the raw_lib object can be defined as lists:

    {
+  "pkg":"HDF5",
+  "raw_lib":{
+    "include":["$ENV{HDF5_DIR}/include","$ENV{HDF5_DIR}/include_fortran"],
+    "lib_directory":["$ENV{HDF5_DIR}/lib","$ENV{HDF5_DIR}/lib64"],
+    "lib":["-lhdf5hl_fortran", "-lhdf5_fortran", "-lhdf5_hl", "-lhdf5"]
+  }
+}

    When providing the required libraries in the lib section one can skip the -l prefix, thus having "lib":"-lrt" and "lib":"rt" would have the same effect.

  • Sometimes it can be useful to define a dummy library in CMake without actually looking for the library files, for example when compiling a tool which uses only a subset of HARMONIE-AROME libraries. When loading HARMONIE-AROME as a CMake package all the targets associated with external dependencies should be present, but some of these dependencies might be not needed for successful linking (or these are added implicitly by the programming environment and adding them for the second time in CMake won't make any difference). In this case you can use the following:

    {"pkg":"gribex",  "dummy":true}

The programs section

This section provides a list of HARMONIE-AROME programs to build (excluding MASTERODB which is always built by the CMake build system), for example:

"programs":["BATOR", "oulan", "ioassign", "LSMIX"]

CMake will try to find the corresponding Fortran source files and will complain if unable to do so. Currently it is not possible to explicitly tell CMake via JSON config which program should be compiled from which source file. If CMake is unable to figure out how to compile a program the CMake-code should be altered to tell it how to do so.

The configure section

This section provides various configure-time flags controlling the build system or selecting features. Currently in the main HARMONIE-AROME config file this section is defined as follows:

"configure":{
+    "use_flexfix":true
+  , "precision":"double"
+},

There the use_flexfix option controls the usage of the flexfix wrapper, set it to true to use the flexfix wrapper when generating lexers for the Blacklist and ODB compilers. Having use_flexfix as false results in using the flex tool directly. The precision option controls the floating point precision of the build, with possible values of double and single. This is a mandatory option, removing it would result in a CMake fatal error at the configure time.

The configure file for gl has the following options in the configure section:

"configure":{
+    "use_aladin":true
+  , "use_netcdf":true
+  , "check_preferlocalconcepts_bug":true
+}

Set use_aladin to true to compile with FA support (requires HARMONIE-AROME libraries). Set use_netcdf to true to enable NetCDF support in gl. Set check_preferlocalconcepts_bug to true to perform a configure-time auto-detection test checking whether the supplied eccodes version is affected by the preferLocalConcepts bug. This test can be skipped, although in such a case corresponding CPP definitions should be manually added to the config file if a 'bad' eccodes version is used.

Note

If an option is removed from the configure section it will be treated by CMake as set to false in case of boolean flags or empty string for string options.

Adding a new configure option

There's no predefined list of configure section members of CMake JSON config, any element found in this section will be available as CONFIG_<option name> from CMake code. For example having:

"configure":{
+    "use_flexfix":true
+  , "precision":"double"
+  , "new_flag":true
+},

would define the following variables available in CMake scripts (after call to the hm_get_json_configure_options function): CONFIG_USE_FLEXFIX, CONFIG_PRECISION and CONFIG_NEW_FLAG. How these newly introduced options are used when configuring the build is up to the developer.

The compile section

This section defines compiler flags and preprocessor definitions which should be used when compiling various components of HARMONIE-AROME. Generally this section should consists of a list of objects with the following structure where the first of these objects should always have the project name set to null:

{
+    "project":null
+  , "flags_fortran":{"any":[], "debug":[], "release":[]}
+  , "flags_c":[]
+  , "defs_fortran":[]
+  , "defs_c":[]
+  , "exclusive_defs":true
+  , "exclusive_flags":true
+},

Individual members of these objects are defined as follows:

  • project is the name of the CMake target for which the provided setting should be applied. CMake matches this field against the names of its targets, which means that having, for example, "project":"surf" would apply the compilation flags for all CMake targets named surf or with names starting with surf-, as in surf-module. When CMake finds a suitable project-specific section it will append project-specific compilation flags to the global compilation flags for the project in question (if not explicitly asked to not use global flags). If there's no suitable section with project-specific options, only the global options will be used.

    Note

    All compilation flags and preprocessor definitions should be set via JSON config and not through the native CMake variables.

  • flags_fortran define compiler flags to be used when compiling Fortran source files. Flags can be defined in three different ways: as a string (e.g., "flags_fortran":"-std=f2003"), as a list (e.g., "flags_fortran":["-std=f2003", "-Wall"]) or as an object. Providing the compiler flags as a JSON object allows for a fine-grained control applying different flags for different build configurations (the first two forms will apply the same flags for any build configuration). This object contains three subsections: any, debug and release. Compiler flags put under the any section will be used for any build type, while flags under debug and release will be used only when CMAKE_BUILD_TYPE is set to Debug or Release, respectively. Thus if having, for example, "flags_fortran":{"any":["-std=f2003"], "debug":["-O0"], "release":["-O2"]} Fortran sources will be compiled using -std=f2003 -O0 when CMAKE_BUILD_TYPE=Debug and -std=f2003 -O2 when CMAKE_BUILD_TYPE=Release.

    Note

    Technically, the compiler flags there are not limited to the debug and release configurations. CMake allows defining custom CMAKE_BUILD_TYPE and it will look for a correspondingly named element under the flags_fortran object. However, this feature is not used in the current version of CMake-based build system for HARMONIE-AROME

    Note

    Compiler flags there can be provided as a list (e.g., ["-Wall", "-Wextra"]) or as a plain string when there is only a single flag (e.g., "flags_fortran":"-O2") but never as a space-separated string with multiple compiler flags. Trying to do so will result in an error.

  • flags_c same as flags_fortran but for compiling C code.

  • defs_fortran defined in the same way as flags_fortran (allowing the same three forms: a string, a list or an object) but contains preprocessor definitions.

    Note

    Preprocessor definitions should be added without the -D prefix, for example: "defs_fortran":{"debug":"PRINT_MORE"} and not as defs_fortran":{"debug":"-DPRINT_MORE"}.

  • defs_c same as defs_fortran but for the C code.

  • exclusive_defs and exclusive_flags flags. In some situations it can be useful to ignore the global compilation flags defined by "project":null and use only project-specific flags or preprocessor definitions. To do so, add exclusive_defs and/or exclusive_flags to the project-specific element of the compile section, for example having:

      {
+      "project":null
+    , "flags_fortran":"-Wall"
+  },
+  {
+      "project":"gribex"
+    , "exclusive_defs":true
+    , "exclusive_flags":true
+    , "flags_fortran":"-O0"
+  },
+  {
+      "project":"surfex"
+    , "flags_fortran":"-O0"
+  }

    will result in having gribex to be always compiled with just -O0 without using any other flags or preprocessor definitions, but surfex will be compiled with -Wall -O0.

The compile_single and compile_double sections

These sections repeat the structure of the compile section. Compiler flags defined by these sections are appended to the flags defined in the compile section of the config based on the value of the value of the precision flag from the configure section.

Note

Do not add auto-double flags (e.g., GNU Fortran's -fdefault-real-8) there, they are handled differently.

The custom_compile section

Sometimes it might be desirable to add some specific compile flags for a single source file. This can be achieved by using the custom_compile section of JSON config as follows:

"custom_compile":{
+  "sufpf.F90":["-O0", "-Wextra"]
+},
Note

Unlike makeup, compilation flags found in the custom_compile are always appended to the list of compiler flags for the specified source file and there's no option to replace them.

Note

When using the Unix Makefiles generator, per-source compile flags are set on the target level. Thus, for example, adding (or updating) a custom compile flag for a source file within arpifs will result in recompilation of the whole arpifs project. The Ninja generator does not have such limitation, and only the source file in question will be recompiled (possibly triggering a recompilation cascade if other Fortran sources depend on it).

This section provides a list of linker flags to be used when linking HARMONIE-AROME executables, for example:

"link":["LINKER:-export-dynamic,--as-needed", "-rdynamic"]
Note

All flags that should be passed directly to ld can be grouped in strings of the following form "LINKER:-option1,-option2" and CMake will figure out how to pass them to the linker.

Using environment variables in JSON configuration files

Current version of CMake JSON config implemented in HARMONIE-AROME allows using environment variables as $ENV{VARIABLE} in the following contexts:

  • string-valued members of the configure section, e.g., "configure":{"precision":"$ENV{VARIABLE}"}
  • any elements of JSON config which allow a list of strings as one of the possible values, for example:
    • "link":["LINKER:-export-dynamic,--as-needed", "$ENV{VARIABLE}"] works since the link section expects a list of strings
    • "compile_double":[{"project":null, "defs_fortran":"$ENV{VARIABLE}"}] also works because defs_fortran allows a list of strings as an option
    • {"pkg":"$ENV{VARIABLE}","use_cmake_config":true} does not work because pkg is expected to provide a single string
Note

Currently CMake recognises only the first $ENV{VAR} when reading a JSON string. Thus, having "include":"$ENV{HDF5_DIR}/include" works as expected, but "include":"$ENV{HDF5_DIR}/$ENV{PRG_ENV}/include" would keep the second $ENV as it is. This is not CMake's limitation, but rather a technical detail of the current JSON config for HARMONIE-AROME, which can be changed in the future, if desired.

Note on the structure of the JSON configuration files

The structure of JSON-based configuration files is not automagically understood by CMake, there is some boilerplate code to be added to CMake scripts. Thus, the described structure of the CMake config file fully applies only to the main build. Other components of the system try to use the same structure of the config file, but some sections might be not handled correctly yet (for example, if a project does not use configure-time flags adding a configure section without modifying the CMake code would not have any effect and corresponding CMake variable won't be added).

Note on the auto-double flags

The compiler flags defining the preferred precision of the floating point variables in CMake build for HARMONIE-AROME are provided on the per-compiler and not per-config level. Thus, for each compiler type recognized by CMake a file named as FortranCompilerFlags.<compiler type>.cmake should be added to the util/cmake directory. This file should define the following CMake variables Fortran_DEFAULT_FLOAT_32, Fortran_DEFAULT_FLOAT_64, Fortran_DEFAULT_INT_32, Fortran_DEFAULT_INT_64 (some of them may be empty if a compiler does not provide corresponding flags). For example for the GNU compilers FortranCompilerFlags.GNU.cmake is defined as:

set(Fortran_DEFAULT_FLOAT_32 "")
+set(Fortran_DEFAULT_FLOAT_64 "-fdefault-double-8 -fdefault-real-8")
+
+set(Fortran_DEFAULT_INT_32   "")
+set(Fortran_DEFAULT_INT_64   "-fdefault-integer-8")

When running cmake configure, and depending on the build precision, a subset of these flags is added to the CMAKE_Fortran_FLAGS variable thus affecting all the Fortran targets. Currently, DEFAULT_INT variables are not used in CMake build, but are provided for consistency.

Note

When creating FortranCompilerFlags.<compiler type>.cmake, <compiler type> should follow the naming provided by CMAKE_Fortran_COMPILER_ID, for example, GNU for gfortran and Intel for ifort. See the CMake documentation for a list of all supported compiler vendors.

Note on generating different build systems with CMake

CMake is a build system generator and it can create different native build systems from the same CMakeLists.txt. The full list of supported generators is available in the CMake documentation, however in practice when building HARMONIE-AROME on a Linux machine (or on a UNIX-like one in general) there are two options: the Unix Makefiles generator and the Ninja generator:

  • Unix Makefiles generator produces a build system based on the standard makefiles and does not use "exotic" tools. This is a default generator for CMake running on Linux and it usually works pretty well. However, when building with Unix Makefiles, CMake relies on its own Fortran parsers to scan the source tree and determine the build dependencies. Thus, in some rare cases of heavy CPP usage in Fortran code CMake can get inter-module dependencies wrong. The Unix Makefiles build is not parallel by default but it can be controlled, as with any conventional makefile-based build, by passing the desired -j flags to make. Additionally, when invoking the build via cmake --build command, a -j (or --parallel) flag can be used for setting the number of parallel jobs in a build-system-agnostic way, see CMake documentation.

  • Ninja is a modern alternative to Make. Ninja is built with focus on speed and Ninja build is parallel by default, however, unlike Make, the build files for Ninja are very cumbersome to hand-write and they are usually machine-generated. When building Fortran code with CMake Ninja generator, an explicit preprocessing step is added, thus the inter-module dependencies should be always correct (or at least these corner cases where Unix Makefiles struggles to get correct dependencies are handled correctly by Ninja). In some cases using Ninja generator can reduce the build time due to better parallelization of the build, however since Ninja has a separate preprocessing step, it generates more output and, if the file system is a bottleneck, Ninja build can be slower than Unix Makefiles build. Using the Ninja generator in CMake requires the ninja tool to be available in the $PATH at the configure time.

Note

Specific CMake generator can be selected at the configure time by passing the correct -G <gen> flag to cmake. For example, cmake -G Ninja <...other CMake args...> or cmake -G "Unix Makefiles" <...other CMake args...>.

Practical considerations

When to re-run CMake configure in my experiment?

In principle, it should be enough to run CMake configure only once to generate the build system and after that any modification of the source code or configuration files should be detected by the build system triggering the required re-build steps. The only time, when CMake configure should be explicitly re-run is when you add a new source file to HARMONIE-AROME. The current implementation of the CMake build scans the file system looking for the source files to compile, so just putting a new file under, say, src/surfex/SURFEX/ and re-running the build isn't enough since this new file would be still unknown to the build system, thus the need of rerunning the configure step first.

I added some code and CMake build stopped working

Unlike makeup, CMake build for HARMONIE-AROME enforces inter-project boundaries and each project has an explicit list of its dependencies. For example, it is not possible to use modules from arpifs in surfex, but it is possible to use mse modules. If after a code modification CMake starts complaining about missing module files, then it means that this modification violates the project dependencies in the build. To fix this problem, please update your changeset to use only the available modules. If you believe that your modification is sound with respect to inter-project dependencies of HARMONIE-AROME and it's the CMake build which misses a dependency, please open a new GitHub issue explaining the problem.

Can I move/copy my build directory to another directory and re-use it?

No, it's generally a bad idea. CMake loves absolute paths and uses them in many parts of the generated build system, thus simply moving the build directory would break the build.

Something went wrong and CMake doesn't behave anymore, can I refresh the build without nuking the whole build directory?

You can try deleting just the CMakeCache.txt file from the build directory.

CMake picks a wrong compiler

Sometimes CMake selects a system default compiler instead of the compiler provided, for example, by loading a module. There are a few options available to force CMake to use a specific compiler, a straightforward one is to set the compiler via commonly-used environment variables (for example, export FC=ifort for a Fortran compiler). Another way, is to set the correct compilers in command-line arguments when configuring the CMake build (for example adding -DCMAKE_Fortran_COMPILER=ifort to the list of CMake arguments). CMake recognizes CMAKE_<LANG>_COMPILER passed from the command line where <LANG> can be Fortran, C or CXX.

Can I get more verbose output when compiling with CMake?

To get detailed information about individual steps and commands issued when compiling HARMONIE-AROME with CMake add -v to your build command:

cmake --build . --target install -v

Is there a way to visualise dependencies between individual targets of HARMONIE-AROME in CMake build?

Since all the inter-target dependencies are defined in CMake scripts it can be useful to have an option to produce a graphical overview of the dependency graph of HARMONIE-AROME without grepping all the CMakeLists.txt files. This can be achieved by adding the --graphviz=<output file name> to the list of CMake arguments, for example:

cmake $HM_LIB/src --graphviz=harmonie.dot

then the produced dependency graph can be visualized using the dot tool:

dot -Tx11 harmonie.dot

The full dependency graph may be very cluttered and take quite some time to render, so it might be a good idea to plot dependencies of a single target, for example:

dot -Tx11 harmonie.dot.surf-static

See the CMake documentation on graphviz for additional information about fine-tuning of the generated graphs.

I need more information about CMake, where do I find documentation?

CMake documentation portal is a great source of detailed information about the various aspects of the CMake build system.

diff --git a/previews/PR1153/Build/Build_with_makeup/index.html b/previews/PR1153/Build/Build_with_makeup/index.html new file mode 100644 index 0000000000..4fc807059f --- /dev/null +++ b/previews/PR1153/Build/Build_with_makeup/index.html @@ -0,0 +1,82 @@ + +Makeup · Harmonie wiki
GitHub

Building with MAKEUP

Background

Makeup is an alternative mechanism to build the HARMONIE system Instead of using GMKPACK to build the libraries and binaries, standard GNU make (gmake) procedures are used, making build of executables an easier task. Also parallel make comes for free, thus enhanced turn-around time for build process. Furthermore, rebuilds and change of compiler flags – either per project and/or per source files basis – are now trivial to do.

MAKEUP very quickly

The process of using the MAKEUP system in stand-alone fashion is described next.

Lets define two helper variables for the presentation purposes:

The variable $HARMONIE_SRC refers to the directory, where the AROME source code is situated. Another variable $HARMONIE_MAKEUP refers to the directory, where build configuration files and MAKEUP's scripts are located. 

#!sh
+# In ksh/bash
+export HARMONIE_SRC=/some/path/harmonie/src
+export HARMONIE_MAKEUP=/some/path/harmonie/util/makeup
+# In csh/tcsh
+setenv HARMONIE_SRC /some/path/harmonie/src
+setenv HARMONIE_MAKEUP /some/path/harmonie/util/makeup

Usually $HARMONIE_MAKEUP is $HARMONIE_SRC/../util/makeup , but it doesn't have to be (e.g. in FMI's production system the $HARMONIE_MAKEUP is situated on a separate disk than the source code $HARMONIE_SRC) – and MAKEUP can handle this now.

The process of building HARMONIE executable contains just a few steps:

  1. Goto directory $HARMONIE_MAKEUP and create/edit your configuration file (config.*). Beware of preferred naming convention:

    config.<MET-INSTITUTE>.<MACHINE-PLATFORM>.<COMPILER-NAME>.<FUNDAMENTAL-OPTIONS>.<OPTIONAL-OPTIONS>

  2. Run MAKEUP's configure script under $HARMONIE_SRC (for example):

    cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp

  3. If applicable, adjust environment settings before launching of make. e.g., on some platforms, one needs to remember loading adequate modules, such as for DMI Cray XT5,

    module swap PrgEnv-pgi PrgEnv-pathscale  # if pathscale is to be used
+module swap xt-mpt xt-mpt/3.5.0
+module swap xt-asyncpe/3.8 xt-asyncpe/3.4

  4. Goto $HARMONIE_SRC directory and type make (or gmake, if make is non-GNU make). Redirect output to a file & terminal:

    cd $HARMONIE_SRC
+gmake 2>&1 |  tee logfile  # ksh/bash
+gmake      |& tee logfile  # csh/tcsh

Using MAKEUP to build auxlibs (bufr, gribex, rgb)

You can now build EMOS- and related libraries by using the MAKEUP. All you need to know is what is your sources.<arch> that you would use to build this stuff anyway. Pass that generic name to the MAKEUP's configure through -E option and you're in business. An example for FMI's Cray:

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure -E sources.crayxt $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+gmake

This will create extra libs (so called MY_SYSLIBS) libbufr.a, libgribex.a and librgb.a and they will end up being linked into your executables, like MASTERODB.

Using MAKEUP to build also util/gl -tools

HARMONIE utility package GL as located in util/gl directory can also be built as part of MAKEUP process, if option -G is also given to the configure:

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure -G $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+gmake

Using MAKEUP to build also Oulan and/or Monitor -tools

HARMONIE utility package MONITOR and obs-preprocessor OULAN can also be build with MAKEUP. If you add option -B , then you will get Oulan and Monitor executables built, too. Or you can be more selective and oopt only for oulan with -b oulan, or just monitor -b monitor :

cd $HARMONIE_SRC
+# Request for building both oulan & monitor, too
+$HARMONIE_MAKEUP/configure -B $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+# .. or add oulan only :
+$HARMONIE_MAKEUP/configure -b oulan $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+# .. or add monitor only :
+$HARMONIE_MAKEUP/configure -b monitor $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+gmake

Building objects away from $HARMONIE_SRC-directory

If you do not want to pollute your source directories with objects and thus making it hard to recognize which files are under version handling system SVN and which ain't (... although SVN command svn -q st would tell ...), then use -P option. This will redirect compilations away from source code, under $HARMONIE_SRC/../makeup.ZZZ, where ZZZ is the suffix of your config-file, e.g. FMI.cray_xt5m.pathscale.mpi+openmp.

The operation sequence is as follows:

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure [options] -P $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+cd $HARMONIE_SRC/../makeup.FMI.cray_xt5m.pathscale.mpi+openmp/src
+gmake

The drawback with this approach is that whenever there is an update in the master source directories, you need to run lengthy configure in order to rsync the working directory up to date. We may need to introduce a separate command for this to avoid full rerun of configure.

You can also use lowercase -p option with argument pointing to a directory-root, where to compile:

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure [options] -p /working/path $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+cd /working/path/src
+gmake

Now, it is important to understand that this /working/path has no connection to version handling i.e. if you change something in your master copy (say : issue a svn up-command), then your working directory remains unaltered. To synchronize it, do the following:

cd /working/path/src
+gmake rsync

More details

Re-running configure

Afterwards you can rerun configure as many times as you wish. Please note that the very first time is always slowed (maybe 10 minutes) as interface blocks for arp/ and ald/ projects are generated.

Usually running configure many times is not necessary – not even when you have changed your config-file (!) – except when interface blocks needs to be updated/re-created (-c or -g options). For example, when subroutine/function call argument list has changed. Then the whole config+build sequence can be run under $HARMONIE_SRC as follows:

cd $HARMONIE_SRC
+# -c option: Check if *some* interface blocks need regeneration and regenerate
+$HARMONIE_MAKEUP/configure -c $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+# -g option: Force to regenerate interface blocks 
+# $HARMONIE_MAKEUP/configure -g $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+gmake

Changing the number of tasks for compilation

The number of tasks used for gmake-compilations is set by default to 8. See NPES parameter in $HARMONIE_MAKEUP/defaults.mk To change the default, you can have two choices:

  1. Add NPES to your config-file, for example set it to 2:
    NPES=2
  2. Invoke gmake with NPES parameter, e.g. set it to 10:
    gmake NPES=10

Inserting DRHOOK for Meso-projects

To insert DrHook profiling automatically for mpa/ and mse/ projects, reconfigure with -H option:

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure -H $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp

You can also pick and choose either mpa/ or mse/ projects with -h option (can be supplied several times):

cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure -h mpa $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+$HARMONIE_MAKEUP/configure -h mse $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+# The following are the same as if the option -H was used
+$HARMONIE_MAKEUP/configure -h mpa -h mse -h surfex $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp
+$HARMONIE_MAKEUP/configure -h mpa:mse:surfex $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp

In the future it may not be necessary to insert DrHook automagically, if the insertion has been done in the svn (version handling) level.

Speeding up compilations by use of RAM-disk

To further speedup compilation and if you have several GBytes of Linux RAM-disk (/dev/shm) available, do the following:

  1. Create your personal RAM-disk subdirectory and check available disk space

    mkdir /dev/shm/$USER
+df -kh /dev/shm/$USER

  2. Reconfigure with RAM-disk either by defining LIBDISK in your config-file or running

    cd $HARMONIE_SRC
+$HARMONIE_MAKEUP/configure -L /dev/shm/$USER $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp

  3. Also define TMPDIR to point to /dev/shm/$USER to allow compiler specific temporary files on RAM-disk

    # In ksh/bash-shells:
+export TMPDIR=/dev/shm/$USER
+gmake 2>&1 |  tee logfile
+# In csh/tcsh-shells:
+setenv TMPDIR /dev/shm/$USER
+gmake      |& tee logfile

Please note that the step-2 creates all libraries AND executablus under the directory pointed by the -L argument. Object files and modules still, however, are placed under corresponding source directories.

What if you run out of RAM-disk space ?

Sometimes you may find that the disk space becomes limited in /dev/shm/$USER. Then you have an option to supply LIBDISK parameter directly to gmake-command without need to reconfigure:

gmake LIBDISK=`pwd`

This usually increases the throughput time as creation of the AROME executable to disk rather than RAM-disk may be 5-10 times slower. But at least you won't run out of disk space.

The Observational DataBase (ODB) is a complicated beast for good reasons. Unlike any other project, which produce just one library per project, correct use of ODB in variational data assimilation requires several libraries.

The trick to manage this with MAKEUP is to create a bunch of symbolic links pointing to $HARMONIE_SRC/odb/ -project directory. There will be one (additional) library for each link. And then we choose carefully the correct subdirectories and source codes therein to be compiled for each library.

Specific ODB-libraries, their meaning & the source files included

LibraryDescriptionSource files
libodbODB core librarylib/ & aux/ : [a-z]*.F90 [a-z]*.c
module/ & pandor/module : *.F90
libodbportInterface between IFS (ARPEGE/ALADIN/AROME) & ODBcma2odb/ & bufr2odb/ : *.F90
– also contains BUFR2ODB routinespandor/extrtovs & pandor/fcq & pandor/mandalay : *.F90
libodbdummyODB-related dummieslib/ : [A-Z]*.F90 [A-Z]*.c
libodbmainODB tools, main programs (C & Fortran)tools/ : [A-Z]*.F90 *.c *.F
libPREODBERA40 database (not needed, but good for debugging)ddl.PREODB/*.sql , ddl.PREODB/*.ddl
libCCMACompressed Central Memory Array database (minimization)ddl.CCMA/*.sql , ddl.CCMA/*.ddl
libECMAExtended Central Memory Array database (obs. screening)ddl.ECMA/*.sql , ddl.ECMA/*.ddl
libECMASCRCarbon copy of ECMA for obs. load balancing between PEsddl.ECMASCR/*.sql , ddl.ECMASCR/*.ddl

From the file $HARMONIE_MAKEUP/configure you can also find how different files are nearly hand-picked for particular libraries. Search for block

 if [[ "$d" = @(odb|odbport|odbdummy|odbmain)]] ; then
+     case "$d" in
+              odb) case "$i" in
+                   lib|aux)              files=$(\ls -C1 [a-z]*.F90 [a-z]*.c 2>/dev/null) ;;
+                   module|pandor/module) files=$(\ls -C1 *.F90 2>/dev/null) ;;
+                   esac ;;
+          odbport) case "$i" in
+                   cma2odb|bufr2odb)                           files=$(\ls -C1 *.F90 2>/dev/null) ;;
+                   pandor/extrtovs|pandor/fcq|pandor/mandalay) files=$(\ls -C1 *.F90 2>/dev/null) ;;
+                   esac ;;
+         odbdummy) [[ "$i" != "lib"]] || files=$(\ls -C1 [A-Z]*.F90 [A-Z]*.c 2>/dev/null) ;;
+          odbmain) [[ "$i" != "tools"]] || files=$(\ls -C1 [A-Z]*.F90 *.c *.F 2>/dev/null) ;;
+     esac
+ elif [[ "$d" = @($case_odbs)]] ; then
+   [[ "$i" != "ddl.$d"]] || {
+       files=$(\ls -C1 *.ddl *.sql 2>/dev/null)
+       mkdepend=$CMDROOT/sfmakedepend_ODB
+   }
+ else
+  ...

Handling SQL-query and data layout files

For SQL-query compilations (ODB/SQL queries are translated into C-code for greater performance), odb98.x SQL-compiler executable is also built as a first thing in the MAKEUP process.

Queries and data definition layouts (DDL-files) are always under <database>/ddl.<database>/ directory.

Miscellaneous stuff

Selective compilation

It is very easy to deviate from the generic compilation options for certain source files or even projects. If you want to change compiler option (say) from -O3 to -O2 for routine src/arp/pp_obs/pppmer.F90, you can add the following lines at the end of your config-file:

pppmer.o: FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))

If you want to apply this to all pppmer*.F90-routines, then you need to enter the following "wildcard"-sequence:

pppme%.o: FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))

Note by the way that for some reason we need to use pppme%.o as the more natural (from Unix) pppmer%.o would choose only routines pppmertl.F90 and pppmerad.F90, not the routine pppmer.F90 at all!

Applying different compiler flags for project (say) arp only, then one can put the following at the end of config-file:

ifeq ($(PROJ),arp)
+%.o:  FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))
+endif

(Re-)building just one project

Sometime you could opt for rebuilding only (say) the xrd-project i.e. libxrd.a. This can be done as follows:

gmake PROJ=xrd

Cleaning up files

You can clean up by

gmake clean

... or selectively just the project arp:

gmake PROJ=arp clean

This clean does not wipe out makefiles i.e. you don't have to rerun configure after this.

Restoring and cleaning up the state of $HARMONIE_SRC

The following command you can run only once before issuing another configure command. It will remove all related object and executable files as well as generated makefiles, logfiles etc. stuff which was generated by MAKEUP's configure :

cd $HARMONIE_SRC
+gmake veryclean
+
+# .. or alternatively :
+$HARMONIE_MAKEUP/unconfigure

Ignoring errors

Sometimes it is useful to enforce compilations even if one or more routines fail to compile. In such cases recommended syntax is:

gmake -i
+
+# or not to mess up the output, use just one process for compilations
+
+gmake NPES=1 -i

Creating precompiled installation

If you want to provide precompiled libraries, objects, source code to other users so that they do not have to start compilation from scratch, then make a distribution or precompiled installation as follows:

gmake PRECOMPILED=/a/precompiled/rootdir precompiled

After this the stuff you just compiled ends up in directory /a/precompiled/rootdir with two subdirectories : src/ and util/. All executables are currently removed.

You can repeat this call, and it will just rsync the modified bits.

Update/check your interface blocks outside configure

The configure has options -c or -g to check up or enforce for (re-)creation of interface blocks of projects arp and ald. To avoid full and lengthy configure-run, you can just do the following:

gmake intfb
diff --git a/previews/PR1153/ClimateGeneration/ClimateGeneration/index.html b/previews/PR1153/ClimateGeneration/ClimateGeneration/index.html new file mode 100644 index 0000000000..18c1229cb2 --- /dev/null +++ b/previews/PR1153/ClimateGeneration/ClimateGeneration/index.html @@ -0,0 +1,6 @@ + +Climate Generation · Harmonie wiki
GitHub

Generation of climate and physiography files

Introduction

The generation of climate files includes two parts. The first part is the generation of climate files for the atmospheric model, the so called e923 configuration. The second part is the generation of the physiography information for SURFEX. In the following we describe how it is implemented in HARMONIE.

Input data for climate generation

The location of your input data for the climate generation is defined by the HM_CLDATA environment variable defined in the config-sh/config.yourhost. At ECMWF the climate data is stored on Atos here: hpc-login:/ec/res4/hpcperm/hlam/data/climate

Information on what data to download is available here. The input data contains physiography data, topography information and climatological values determined from a one year ARPEGE assimilation experiment with a resolution of T79. Climatological aerosol optical depths (tegen) or vertically integrated aerosol mass based on CAMS reanalysis 2003-2022 (camscms), can be included in the monthly climate files.

In the current version the option to use pre-generated climate files has been introduced to save time for quick experiments. To use pre-generated domains you need to set USE_REF_CLIMDIR=yes in Env_system. The regenerated domains location is defined in config_exp.h and in ECMWF are located in REF_CLIMDIR=ec:/hlam/harmonie_climdir/release-43h2.1.rc1/$DOMAIN/$ECOCLIMAP_VERSION.

Preparation of SURFEX physiography file

SURFEX needs information about the distribution of different available tiles like nature, sea, water and town. The nature tile also needs information about type of vegetation and soiltypes. The main input sources for this are found at SURFEX physiographic maps.

The data base for SURFEX-file preparation is located under HM_CLDATA/PGD

  • ecoclimats_v2.* : Landtypes
  • gtopo30.* : Topography
  • sand_fao.* : Soil type distribution
  • clay_fao.* : Soil type distribution

The generation of SURFEX physiography file (PGD.lfi) is done in scr/Prepare_pgd. The script creates the namelist OPTIONS.nam based on the DOMAIN settings in scr/Harmonie_domains.pm. Note that the SURFEX domain is only created over the C+I area. In the namelist we set which scheme that should be activated for each tile.

Tile
PHYSICSNatureSeaWaterTown
AROMEISBASEAFLXWATFLXTEB
ALAROISBASEAFLXWATFLXTown as rock

The program PGD produces one SURFEX physiography file PGD.lfi, which is stored in CLIMDIR directory.

To make sure we have the same topography input for the atmospheric part we call Prepare_pgd two times. One time to produce a PGD.lfi for SURFEX and a second time to produce a PGD.fa file that can be used as input for the climate generation described below. Note that for the atmosphere the topography will be spectrally filtered and the resulting topography will be imposed on SURFEX again.

Generation of non SURFEX monthly climate files

These files contain, among others, the surface elevation, land-sea mask, climatological aerosol and several near-surface variables for ALADIN/ALARO systems that may run without SURFEX. Climatological aerosol can be aerosol optical depth@550 nm - Tegen or CAMS, in the future also vertically integrated aerosol mass mixing ratios based on CAMS reanalysis.

scr/Climate is a script, which prepares climate file(s) for prefered forecast range. Climate files are produced for past, present and following month. The outline of Climate is as follows:

  • Check if climate files already exists.
  • Creation of namelists. The definition of domain and truncation values is taken from src/Harmonie_domains.pm.
  • Part 0: Read the PGD.fa file generated by SURFEX and write it to Neworog
  • Part 1: Filter Neworog to target grid with spectral smoothing to remove 2dx waves.
  • Part 2: generation of surface, soil and vegetation variables, without annual variation.
  • Part 3: creation of monthly climatological values and modification of albedo and emissivity according to the climatology of sea-ice limit.
  • Part 4: definition and modification of the vegetation and surface characteristics
  • Part 5: modification of fields created by step 2 and 4 over land from high resolution datasets (for each month)
  • Part 6: modification of climatological values

The result is climate files for the previous, current and next month. The files are named after their month like m01, m02 - m12 and stored in CLIMDIR.

Further reference e923

diff --git a/previews/PR1153/ClimateGeneration/DownloadInputData/index.html b/previews/PR1153/ClimateGeneration/DownloadInputData/index.html new file mode 100644 index 0000000000..5025d93605 --- /dev/null +++ b/previews/PR1153/ClimateGeneration/DownloadInputData/index.html @@ -0,0 +1,6 @@ + +Input Data · Harmonie wiki
GitHub

Download input data

Before you can start running HARMONIE experiments some input data (external from the code repository) needs to be available on your platform. The input data contains physiography data, topography information and climatological values determined from a one year ARPEGE assimilation experiment with a resolution of T79.

diff --git a/previews/PR1153/ClimateSimulations/ClimateSimulation/index.html b/previews/PR1153/ClimateSimulations/ClimateSimulation/index.html new file mode 100644 index 0000000000..235c2d9a16 --- /dev/null +++ b/previews/PR1153/ClimateSimulations/ClimateSimulation/index.html @@ -0,0 +1,6 @@ + +- · Harmonie wiki
GitHub
diff --git a/previews/PR1153/DataAssimilation/CHKEVO/index.html b/previews/PR1153/DataAssimilation/CHKEVO/index.html new file mode 100644 index 0000000000..dbb9561735 --- /dev/null +++ b/previews/PR1153/DataAssimilation/CHKEVO/index.html @@ -0,0 +1,23 @@ + +CHKEVO · Harmonie wiki
GitHub

ECHKEVO

Introduction

This page describes how to activate CHKEVO for diagnosing forecast model spin-up of pressure. This diagnostic is available in trunk from r16488. Yann Michel (MF) kindly suggested some of the changes required. The diagnostics are generated as part of a forecast model run up to 3 h or 6 h. A known problem is that the method fails when the first lateral boundary conditions are read by the model. The suggestion is to use BDINT=3 and forecast length 3 h. FULL-POS should also be deactivated in config_exp.h.

Preparations

It is assumed you already have a well defined experiment called your_exp. The following instructions are valid for a 3h diagnostic forecast.

NAMCHK namelist

  • Enable CHKEVO in the namelist (in the %arome entries):

    cd $HOME/hm_home/your_exp
+~hlam/Harmonie co nam/harmonie_namelists.pm

  • Edit NAMCHK:

    NAMCHK=>{
+'LECHKEVO' => '.TRUE.,',
+'LECHKTND' => '.TRUE.,',
+'LECHKPS' => '.TRUE.,',
+},

ecf/config_exp.h

  • Edit your ecf/config_exp.h as follows:

    POSTP="none"                          # Postprocessing by Fullpos (inline|offline|none).
+BDINT=3
+HH_LIST="00-21:3"                     # Which cycles to run, replaces FCINT
+LL_LIST="3"                           # Forecast lengths for the cycles [h], replaces LL, LLMAIN

  • Alternatively for a 6 h diagnostic forecast:

    POSTP="none"                          # Postprocessing by Fullpos (inline|offline|none).
+BDINT=6
+HH_LIST="00-18:6"                     # Which cycles to run, replaces FCINT
+LL_LIST="6"                           # Forecast lengths for the cycles [h], replaces LL, LLMAIN

Results

After running the forecast with CHKEVO activated the statistics of surface pressure tendencies are written to NODE.001_01 log file. This log file is included in the HM_Date_YYYYMMDDHH.html log file (written to $SCRATCH/hm_home/your_exp/archive/log on ECMWF). The results can be obtained by grepping the log file as follows:

grep "^ CHKEVO : " HM_Date_2013041118.html | tail -n +2

This gives the RMS and AVG of pressure tendency for each time step. (The first line is removed as the reading of the start file produces zeros):

 CHKEVO :   2.5683273661035013       0.42575646791552352     
+ CHKEVO :   2.5432078820872874       0.36700119757663685     
+ CHKEVO :   1.4402533781888094       0.23533175032737094     
+ CHKEVO :   1.3677546254375832       0.22965677860570116     
+ CHKEVO :   1.1506125378848564       0.20575065246468008     
+ CHKEVO :  0.98597708942270756       0.19299583141063531
+.....
  • The first column contains the string CHKEVO :
  • Second column contains the RMS of dps/dt averaged over the domain.
  • Second column contains the AVG of dps/dt averaged over the domain.

The RMS of dps/dt alone can be extracted with:

grep "^ CHKEVO : " HM_Date_2013041118.html | tail -n +2 | awk '{print $3}'
diff --git a/previews/PR1153/DataAssimilation/DFS/index.html b/previews/PR1153/DataAssimilation/DFS/index.html new file mode 100644 index 0000000000..545bd32aaa --- /dev/null +++ b/previews/PR1153/DataAssimilation/DFS/index.html @@ -0,0 +1,6 @@ + +DFS · Harmonie wiki
GitHub
diff --git a/previews/PR1153/DataAssimilation/DaAlgorithms/index.html b/previews/PR1153/DataAssimilation/DaAlgorithms/index.html new file mode 100644 index 0000000000..34a4b466c2 --- /dev/null +++ b/previews/PR1153/DataAssimilation/DaAlgorithms/index.html @@ -0,0 +1,82 @@ + +Algorithms · Harmonie wiki
GitHub

Data assimilation algorithms

3D-Var

The default upper-air data assimilation algorithm is three-dimensional variational assimilation (3D-Var). To use 3D-Var no changes to ecf/config_exp.h should be required assuming structure function data files are available for your domain. Structure function input is defined in scr/include.ass.

Settings

List of 3D-Var settings that the user should be concerned about.

4D-Var

With 43h2.2 four-dimensional variational assimilation (4D-Var) is available as a non-default option. In order to setup an experiment to use 4D-Var one should issue the following commands:

mkdir -p /path/to/home/hm_home/MY_EXP
+cd /path/to/home/hm_home/MY_EXP
+/path/to/Harmonie/config-sh/Harmonie setup -r /path/to/Harmonie -c AROME_4DVAR

To use 4D-Var no changes to ecf/config_exp.h should be required assuming suitable structure function data files are available for your domain (see also ILRES in the settings section). Structure function input is defined in scr/include.ass.

Settings

List of 4D-Var settings that the user should be concerned about.

With the following settings the working of the 4D-Var can be changed. Defaults values are given

NOUTERLOOP=2                            # number of 4DVAR outer loops
+ILRES=6,3                               # Resolution (in parts of full) of outer loops as compared to the forecast resolution. The domain NLATxNLON should have the property that for the settings of ILRES  both NLON/ILRES and NLAT/ILRES are of the form  5^c^ 3^d^ 2^e^, where c, d and e are integers >= 0 and e>=1.
+TSTEP4D=300,150                         # Timestep length (seconds) of outer loops TL+AD
+TSTEPTRAJ=300,300                       # How often the model state is saved for linearization
+NITER4D=10,15                           # Maximum number of inner loop iterations in 4D-Var outer loops
+NSIMU4D=15,20                           # Maximum number of cost function simulations in 4D-Var outer loops
+CH_RES_SPEC=yes                         # yes => change of resolution of the increment spectrally; no => by FULLPOS
+FORCE1=no                               # yes => tendency increment; no => analysis increment in loop 1
+FORCE2=no                               # yes => tendency increment; no => analysis increment in loop 2

Schematic work flow of 4D-Var

  • After the screening 4DVscreen for the default 3h observation window (2h before and 1h after the start of the main forecast),
  • 4DVprolog prepares the initial conditions at the appropriate resolution (ILRES settings) for the forecasts used in minimization. The input here is the background BGHR (ICMSHHARM+0001 fields of the former cycle supplemented with some surface fields).
  • Subsequently 4DVminim produces initially the low resolution at the beginning of the observation window (an_lowres_$loop), which is then (CH_RES_SPEC=yes in config_exp.h) transformed to the field at forecast resolution (an_hr_begwin).
  • This field is complemented in Blendhr with necessary surface fields and the resulting field (anb_hr_begwin) acts as the initial condition for the trajectory run 4DVtraj.
  • From the 2h forecast of 4DVtraj (ICMSHTRAJ+0002 fields) the main forecast is started.

Cloudingest - Cloud Initialization

The cloud initialization modifies temperature and humidity fields with help of MSGcloudYYYYMMDDHH.grib file, which contains 2-d fields of cloudtop-temperature [K], cloudmask [0-1] and cloudbase [m]. Pre cy46h the Cloudingest happened within MASTERODB in src/arpifs specifically in src/arpifs/phys_dmn/msginit.F90 routine. Since cy46h the Cloudingest uses pysurfex and gl to do the job.

Settings

Enable Cloudingest in ecf/config_exp.h:

USE_MSG=yes                              # Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes), expects MSGcloudYYYYMMDDHH.grib in $OBDIR

And in src/include.ass:

export CLOUD_BASE=1                # 1 and USE_MSG=true (ecf/config_exp.h) => msginit

to replace the cloudbase field in MSGcloudYYYYMMDDHH.grib with an OI interpolated field of SYNOP observations of CloudBaseHeights and postprocessed field of cloudbases of the first-guess file.

Ecflow and schematic work flow of Cloudingest

In case of 3DVar assimilation, the ecflow AnUA family should look like this:

And a schematic work-flow of tasks and files involved:

Incremental Analysis Updates - IAU

This is a modified and experimental version of the default implemented Forward-Facing Incremental Analysis Update, that is described elsewhere (and mainly controlled via namelist settings). This algoritm is using the same code but is changed in a few fundamental ways on the logistical plane. Instead of introducing the innovations gradually in the forecast from the analysis point (as in default 3Dvar) the analysis is done at "t=0" and then the forecast is started at an earlier point so that the center of the introductions of the innovations are located at the above mentioned analysis point.

This is done through shifting the forecast start to 1h before "t=0" and activating a namelist change in the forecast namelist:

NAMIAU=>{
+  'LIAU' => '.TRUE.,',
+  'TSTARTIAU' => '1800.0,',
+  'TSTOPIAU' => '5400.0,',
+  'ALPHAIAU' => '1.0,',

Hence the forecast is running freely for 30min and then starts adding the increments during 1h centered around the "t=0" point, during 1h. If these times are subject of change (for example if a larger window is desired, mind that you also need to have change what files are linked to various process such as the forecast so that the correct start files are linked to that process.

Settings

If you want to try this method, or want to test it in order to develop it further there is a few thing to keep in mind. Before doing anything else you have to modify the write up times in ecf/config_exp.h so that the model have access to the startfiles that it needs inorder to start.

From the DEFAULT:

    LL_LIST="12,3"                          # Forecast lengths for the cycles [h], replaces LL, LLMAIN
+    HWRITUPTIMES="00-21:3,24-60:6"          # History file output times
+    FULLFAFTIMES=$HWRITUPTIMES              # History FA file IO server gather times
+    PWRITUPTIMES="00-60:3"                  # Postprocessing times
+    PFFULLWFTIMES=$PWRITUPTIMES             # Postprocessing FA file IO server gathering times
+    VERITIMES="00-60:1"                     # Verification output times, changes PWRITUPTIMES/SFXSELTIMES
+    SFXSELTIMES=$PWRITUPTIMES               # Surfex select file output times

to:

    LL_LIST="12,6"                          # Forecast lengths for the cycles [h], replaces LL, LLMAIN
+    HWRITUPTIMES="00-06:1,06-21:3,24-60:6"  # History file output times
+    FULLFAFTIMES=$HWRITUPTIMES              # History FA file IO server gather times
+    PWRITUPTIMES="00-06:1,06-60:3"          # Postprocessing times
+    PFFULLWFTIMES=$PWRITUPTIMES             # Postprocessing FA file IO server gathering times
+    VERITIMES="00-60:1"                     # Verification output times, changes PWRITUPTIMES/SFXSELTIMES
+    SFXSELTIMES=$PWRITUPTIMES               # Surfex select file output times
+                                            # Only meaningful if SURFEX_LSELECT=yes
+    SFXSWFTIMES=$SFXSELTIMES                # SURFEX select FA file IO server gathering times
+    SWRITUPTIMES="00-06:1"                  # Surfex model state output times
+    SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times

  • Then run one cycle for at least 6h so that all the prerequesite files are generated before turning on IAUVAR.

  • Second thing, when the previous run has completed, is to set the IAUVAR ecf/config_exp.h to yes and keep running. It should be automatic to continue as usual. Make sure that you do not manually set LL to be shorter then 6h.

The surface assimilation is moved to the start of the forecast and hence it is only the upper air assimilation that is involved in the IAU.

Note

There is a difference between the first run with IAUVAR and all the following, due to the first run couples to a run done without IAU and the others couple to a run that has done IAU, so the files used as startfiles are different in valid times. To this effect the first run saves a semaphore file in the $SCRATCH/hm_home/exp_name/ directory for the following runs to react to! So if you need to rerun the first run, for some reason, that semaphore file (named is_iauvar) needs to be manually removed!!

Flow diagram of IAU (Magnus will help)

Variational Constraints (VC)

Balances among analysed meteorological variables in the data assimilation process can be effectively introduced by means of the well-known method of variational constraints (VC). In the case of the ALADIN-NH dynamics, its semi-implicit linear system for the non-hydrostatic fully compressible Euler equations (SI) appears as a convenient way of giving a precise definition to these constraints. An interesting feature of this method is the integration in the analysis of the vertical velocity field, which clearly must be important in convection permitting NWP. In this on-line doc resource only practical aspects on how to use this option will be mentioned, comprehensive information on this method can be found , for instance, in "Variational Constraints for Data Assimilation in ALADIN-NH Dynamics" Available from: https://www.researchgate.net/publication/326479446VariationalConstraintsforDataAssimilationinALADIN-NHDynamics.

The VC algorithm is activated by setting TRUE the LVARCONS switch in ecf/config_exp.h

# **** Assimilation ****
+LOOPS="no"
+ANAATMO=3DVAR                           # Atmospheric analysis (3DVAR|4DVAR|blending|none)
+LVARCONS='.TRUE.'                       # apply VC to analysis increments for a better balanced initial state
+IAUVAR=no
+

Obviously this will have any effect on the analysis only when 3DVAR is active and other initialization schemes (e.g. DFI) are off. The VC algorithm is applied after the 3DVAR minimization to the analysis increments. When any of the other options for ANAATMO are active, VC will not be applied. Application of DFI or other filters on the analysis will be redundant as VC is supposed to remove much of the noise in principle present in the t=0 dynamical fields: horizontal and vertical divergence, temperature, pressure departure and surface pressure. Note that vorticity is not part of the SI system, and therefore is not processed by VC.

The whole VC run configuration is controlled by means of a single the namelist NEMVARCONS to be found in nam/harmonie_namelists.pm . The default values are:


+%minimization=(
+...
+
+NEMVARCONS=>{
+'VCVERBOSELEV' => '0,',
+'LVCTESTID' => '.FALSE.,',
+'lVCPLOTGF' => '.FALSE.,',
+'LVCFHD' => '.TRUE.,',
+'LVCFT'  => '.TRUE.,',
+'LVCFPS' => '.TRUE.,',
+'LVCFGW' => '.FALSE.,',
+'VCWEIGHT' => '10.0,',
+'VCWEIGHTHD' => '-1.50,',
+'VCWEIGHTT' => '-1.50,',
+'VCWEIGHTPS' => '-1.50,',
+'VCWEIGHTGW' => '-1.50,',
+'LVCFGWSCALE' => '.TRUE.,',
+'VCLOGPS' => '0,',
+'VCTSTEP' => '60.0,',
+'VCPSREF' => '90000.0,',
+'VCTREF' => '350.0,',
+'VCTREFA' => '70.0,',
+},
+)
+

Modification of these values should be done in nam/harmonie_namelists.pm itself. To use effectively VC, the user has to be aware of only a subset of these parameters :

'VCVERBOSELEV' => '0,', # for more detailed printouts regarding VC , raise this value ( up to 4 )
+
+'VCWEIGHT' => '10.0,',  # Critical parameter of the algorithm. Gives the relative weight between increments to be
+                        # filtered and dynamical constraints. Values should be between 0.5 (zero not allowed !) and 10.
+                        # The higher the value, the less constrained is the analysis. This default value of 10
+                        # guarantees that final analysis increments are very close to 3DVAR increments.
+                        # In the many different tests done during validation and verification experiemnts,
+                        # a value of about 1.0 has given best results.
+
+'VCTSTEP' => '60.0,',     # These parameters correspond to the SI parameters and to the time step. Although the  
+'VCPSREF' => '90000.0,',  # SI in forecast mode is different from the SI used by VC ( in particular the numerical   
+'VCTREF' => '350.0,',     # method is different ) these values should agree with those used in forecast mode for  
+'VCTREFA' => '70.0,',     # optimal performance
+},
+

Maybe the only other information that is required to effectively use this VC algorithm, concerns the parameters :

'VCWEIGHTHD' => '-1.50,',
+'VCWEIGHTT' => '-1.50,',
+'VCWEIGHTPS' => '-1.50,',

They enable the flexibility of considering different weights for different 3DVAR analysis increments. When VC operates with a low VCWEIGHT value (strongly constrained mode), it can remove some overfitting to wind, temperature and/or surface pressure observations, and this may produce an apparent degradation in operational verification curves close to t=0. These three parameters permit adjust individually each variable. Note that negative values ( as in the default ) automatically reverts to the VCWEIGHT value.

diff --git a/previews/PR1153/DataAssimilation/DigitalFilterInitialization/index.html b/previews/PR1153/DataAssimilation/DigitalFilterInitialization/index.html new file mode 100644 index 0000000000..56f534df00 --- /dev/null +++ b/previews/PR1153/DataAssimilation/DigitalFilterInitialization/index.html @@ -0,0 +1,6 @@ + +Digital Filter Initialization · Harmonie wiki
GitHub

Digital Filter Initialization

Digital Filter Initialization (DFI) is documented by Météo France here. This wiki page is based on the "Version cycle 40t1" document available on the gmapdoc web page. By default HARMONIE does not use DFI.

DFI

The use (or not) of DFI is controlled by the variable DFI in ecf/config_exp.h. By default it is set to none.

  • idfi, incremental DFI
  • fdfi, full DFI
  • none - no initialization (default)

scr/Dfi is the script which calls the model in order to carry out DFI.

References

diff --git a/previews/PR1153/DataAssimilation/LSMIXandJk/index.html b/previews/PR1153/DataAssimilation/LSMIXandJk/index.html new file mode 100644 index 0000000000..dad53dbbdf --- /dev/null +++ b/previews/PR1153/DataAssimilation/LSMIXandJk/index.html @@ -0,0 +1,6 @@ + +LSMIX and Jk · Harmonie wiki
GitHub

Jk as a pre-mixing method

The 3D-Var cost function including the Jk term can be written:

\[J(x) = J_b + J_o + J_k = \frac{1}{2} (x - x_b)^{\rm T} B^{-1}(x - x_b) + \frac{1}{2} (y - Hx)^{\rm T}R^{-1}(y - Hx) + \frac{1}{2} (x - x_{LS})^{\rm T} V^{-1}(x - x_{LS})\]

Setting the gradient to zero, we have at the optimal $x$:

\[\nabla J = B^{-1}(x - x_b) - H^{\rm T}R^{-1}(y - Hx) + V^{-1}(x - x_{LS}) = 0 \]

or

\[\left[B^{-1} + V^{-1} + H^{\rm T}R^{-1}H\right] \left(x - x_b \right) = H^{\rm T}R^{-1}(y - Hx_b) + V^{-1}(x_{LS} - x_b). \]

Equivalent pre-mixed first guess

Assume now that $\widetilde{x_b}$ is some yet unknown, pre-mixed field depending on $x_b$ and $x_{LS}$ that we want to determine. By adding and subtracting identical terms to the gradient equation, we have

\[B^{-1}(x - x_b + \widetilde{x_b} - \widetilde{x_b}) - H^{\rm T}R^{-1}(y - Hx + H\widetilde{x_b} - H\widetilde{x_b}) + V^{-1}(x - x_{LS} + \widetilde{x_b} - \widetilde{x_b}) = 0,\]

which, when reorganized gives

\[\left[B^{-1} + V^{-1} + H^{\rm T}R^{-1}H \right] \left(x - \widetilde{x_b}\right) = H^{\rm T}R^{-1}(y - H\widetilde{x_b}) + B^{-1}(x_b - \widetilde{x_b}) + V^{-1}(x_{LS} - \widetilde{x_b}). \]

If the last two terms on the right hand side add up to zero, i.e.,

\[B^{-1}(x_b - \widetilde{x_b}) + V^{-1}(x_{LS} - \widetilde{x_b}) = 0, \]

which means that

\[\widetilde{x_b} = [B^{-1} + V^{-1}]^{-1} ( B^{-1} x_b + V^{-1} x_{LS} ), \]

then we see that by using this mixed first guess the Jk term can be omitted, provided we use a modified B-matrix with the property that

\[\widetilde{B}^{-1} = B^{-1} + V^{-1}. \]

By writing

\[B^{-1} + V^{-1} = B^{-1}(B + V)V^{-1} = V^{-1}(B + V)B^{-1} \]

we easily see by simply inverting that

\[\widetilde{B} = [B^{-1} + V^{-1}]^{-1} = B(B + V)^{-1}V = V(B + V)^{-1}B. \]

To conclude, a 3D-Var minimization with Jk is equivalent to a minimization without the Jk term, provided that one pre-mixes the two first guess fields according to

\[\widetilde{x_b} = [B^{-1} + V^{-1}]^{-1} ( B^{-1} x_b + V^{-1} x_{LS} ) = \widetilde{B}( B^{-1} x_b + V^{-1} x_{LS} ) = V(B + V)^{-1}x_b + B(B + V)^{-1}x_{LS} \]

and use the following covariance matrix for this mixed first guess:

\[\widetilde{B} = [B^{-1} + V^{-1}]^{-1} = B(B + V)^{-1}V = V(B + V)^{-1}B. \]

Whether this is implementable in practice is a different story, it just shows the theoretical equivalence, and how LSMIXBC should ideally be done if Jk is the right answer.

diff --git a/previews/PR1153/DataAssimilation/MTEN/index.html b/previews/PR1153/DataAssimilation/MTEN/index.html new file mode 100644 index 0000000000..d0e2ffb8ff --- /dev/null +++ b/previews/PR1153/DataAssimilation/MTEN/index.html @@ -0,0 +1,58 @@ + +MTEN · Harmonie wiki
GitHub

Moist Total Energy Norm (MTEN) diagnostic

MTEN shows the sensitivity of the forecast model to different observations withdrawn from the full analysis system. There are two ways of computing the MTEN diagnostic: A special branch was created in CY40 (see below) where the MTEN diagnostic can be requested. This approach uses Harmonie ensemble system to perform series of observation denial independent runs. This means that the following settings are used in msms/harmonie.pm

    'ENSBDMBR' => [ 0 ],
+    'ENSCTL'   => [ '000',  '001',  '002',  '003', '004', '005', '006', '007' ],
+    'AIRCRAFT_OBS' => [ 0, 1, 1, 1, 1, 1, 1, 1],
+    'BUOY_OBS'     => [ 1, 0, 1, 1, 1, 1, 1, 1],
+    'AMSUA_OBS'    => [ 1, 1, 0, 1, 1, 1, 1, 1],
+    'AMSUB_OBS'    => [ 1, 1, 1, 0, 1, 1, 1, 1],
+    'POL_OBS'      => [ 1, 1, 1, 1, 0, 1, 1, 1],
+    'HRW_OBS'      => [ 1, 1, 1, 1, 1, 0, 1, 1],
+    'TEMP_OBS'     => [ 1, 1, 1, 1, 1, 1, 0, 1],
+    'IASI_OBS'     => [ 1, 1, 1, 1, 1, 1, 1, 0],

In this particular example, we are interested in the impact of aircraft, Buoy, amsu-a, amsu-b/mhs, polar winds, high-resolution geowinds, radiosonde, and iasi observations. This setting is activated in config.exp with the following choice:

export  REFEXP DOMTEN
+export SYNOP_OBS=1             # All synop
+export AIRCRAFT_OBS=1          # AMDAR, AIREP, ACARS
+export BUOY_OBS=1              # Buoy
+export POL_OBS=1               # Satob polar winds
+export GEO_OBS=0               # Satob geo winds
+export HRW_OBS=1               # Satob HRWind
+export TEMP_OBS=1              # TEMP, TEMPSHIP
+export PILOT_OBS=1             # Pilot, Europrofiler
+export SEVIRI_OBS=0            # Seviri radiances
+export AMSUA_OBS=1             # AMSU-A
+export AMSUB_OBS=1             # AMSU-B, MHS
+export IASI_OBS=1              # IASI
+export PAOB_OBS=0              # PAOB not defined everywhere
+export SCATT_OBS=0             # Scatterometer data not defined everywhere
+export LIMB_OBS=0              # LIMB observations, GPS Radio Occultations
+export RADAR_OBS=0             # Radar
+export GNSS_OBS=0              # GNSS

Where REFEXP is the reference experiment (see below), and DOMTEN (yes,no) is activate the MTEN choice when fetching the First-guess and the VarBC files for the MTEN computation, as follows: in /scr/Fetch_assim_data:

if [ ${DOMTEN} = "yes" ]; then
+  HM_REFEXP=/sbt/harmonie/$REFEXP
+  adir=${ECFSLOC}:${HM_REFEXP}/$YY/$MM/$DD/$HH
+else
+  adir=$( ArchDir $HM_EXP $YY $MM $DD $HH )
+fi

in scr/FirstGuess (be careful this happens twice in the script)

if [ ${DOMTEN} = "yes" ]; then
+  HM_REFEXP=/sbt/harmonie/$REFEXP
+  adir=${ECFSLOC}:${HM_REFEXP}/$FGYY/$FGMM/$FGDD/$FGHH
+else
+  adir=$( ArchDir $HM_EXP $FGYY $FGMM $FGDD $FGHH )
+fi
  • The MTEN can be also computed using a deterministic system. In this case, you need to take care of the First-guess and the VarBC files, which should come from the reference experiment. You need to carefully set the choice of the observations to be tested in scr/include.ass. In this case, you need to adapt the above Fetch_assim_data and FirstGuess scripts accordingly.

The MTEN diagnostic, similarly to DFS, is case sensitive, so it's better to male the computation with times and dates enough distant (by 5 days or more).

The MTEN can be computed the example below:

  for EXP in EXP1 EXP2;
+    for RANGE in 06 12 18 24 30 36 42 48;
+    do
+
+       YY=`echo $DTG | cut -c 1-4`
+       mm=`echo $DTG | cut -c 5-6`
+       dd=`echo $DTG | cut -c 7-8`
+       hh=`echo $DTG | cut -c 9-10`
+       # -- Get the FA files
+       # ===================
+       ecp ec:/$USER/harmonie/$REFEXP/$YY/$mm/$dd/$hh/ICMSHHARM+00$RANGE ./FAREF$RANGE
+       ecp ec:/$USER/harmonie/${EXP}/$YY/$mm/$dd/$hh/ICMSHHARM+00$RANGE ./${EXP}$RANGE
+       $MTEN_BIN/MTEN ./FAREF$RANGE ./${EXP}$RANGE
+
+    done
+  done
+

See (Storto and Randriamampianina, 2010) for more details.

diff --git a/previews/PR1153/DataAssimilation/NWECHKEVO/index.html b/previews/PR1153/DataAssimilation/NWECHKEVO/index.html new file mode 100644 index 0000000000..417f1cc2d5 --- /dev/null +++ b/previews/PR1153/DataAssimilation/NWECHKEVO/index.html @@ -0,0 +1,56 @@ + +NWECHKEVO · Harmonie wiki
GitHub

NWECHKEVO

Introduction

The new utility NWECHKEVO was introduced in order to make the generation of diagnostics for the study of spin-up in dynamics effects more efficient. The utility CHKEVO turned out to slow down the forecast run to unpractical times. NWECHKEVO produces timeseries for the variables log(Ps), horiz. vorticity, horiz. divergence, vertical divergence, pressure departure and temperature for the first 180 timesteps of integration at timestep resolution. These timeseries are produced at selected points within the domain and at all levels for the last upper-air five variables (HVor, HDiv, VDiv, PD and T).

Preparations. NAMCHK namelist

The user must select a list of points at which locations he wants the diagnostics to be generated. The coordinates are given in GPx and GPy coordinates, not geographical coordinates. These co-ordinates are then introduced in the namelist NAMCHK as in the following example 

NAMCHK=>{
+  'NGPCHK' => '17,',
+  'NXCHK(1:17)' => '263,335,447,525,606,390,420,540,644,333,509,329,388,480,266,259,271,',
+  'NYCHK(1:17)' => '462,472,469,398,388,406,325,284,300,293,243,215,167,178,358,279,200,',
+ },

NB: These points correspond to the locations of 17 different weather radars in the domain 

'IBERIAxxm_2.5'=>{
+      'TSTEP'  => '60',
+      'NLON'   => '800',
+      'NLAT'   => '648',
+      'LONC'   => '-4.5',
+      'LATC'   => '40.0',
+      'LON0'   => '-4.5',
+      'LAT0'   => '40.0',
+      'GSIZE'  => '2500.',
+   },

The default value for LNWECHKEVO is set to FALSE in suechk.F90. To enable this option, set LNWECHKEVO=.TRUE in ecf/config_exp.h. This isetting will be carried over to scr/Forecast at the time of namelist_forecast specification. NWECHKEVO takes priority over ECHKEVO, that is, when LNWECHKEVO=.TRUE., LECHKEVO is set to FALSE no matter what is specified at the namelist level ( awarning message will appear in the logs). This is so in order to avoid conflicts between the previous and the new utilities. If the user wants the previous method just activate LECHKEVO and make sure not to activate LNWECHKEVO.

Important Info

NWECHKEVO speeds up the generation of diagnostics by minimizing MPI overhead. During the set-up, it is determined which MPI-task processes each point igiven via NAMCHK. The internal arrays that contain this info are given a size such that no more than 10 points can be handled by each MPI-task. Therefore, when running with a small number of MPI-tasks it is possible that some of the points in NAMCHK are ignored. This situation however is very unlikely because the usual number of MPI-tasks is quite big. Nonetheless, the parameter NWJPGPCHK (in module YOMCHK) can be given a bigger value if necessary.

Modifications in scr/Forecast

For ease of use, NWECHKEVO dumps the results in text format to the standard output ( /NODE* files ). The size of these files remains managable unless the number of points in NAMCHK is very big. As the diagnostics are generated avoiding MPI comms., the standard output for all tasks must be activated by using the NOUTPUT parameter in NAMPAR0. This is reason why scr/Forecast must be modified.

Results

The results can be easily obtained by grepping out from the NODEs files. First , in order to know which NODE file contains a given point we can do on NODE.001_01

grep SETUPNEWECHKEVO NODE.001_01

obtaining a table like this

SETUPNEWECHKEVO: JPROC          120  ISETA=           8  ISETB=           8  ISETW=           8  ISETV=           8
+SETUPNEWECHKEVO: IGP=          13  (nychk,nxchk)=         167         388  CC in chunk=         1032
+SETUPNEWECHKEVO: JPROC          138  ISETA=           9  ISETB=          10  ISETW=           9  ISETV=          10
+SETUPNEWECHKEVO: IGP=          14  (nychk,nxchk)=         178         480  CC in chunk=          527

which indicates that GP number 13 (co-ordinates 167,388) on the NAMCHK is allocated to MPI-task 120. The point has ordinate number 1032 within the domain chunk assigned to this MPI-task. It outputs to NODE.008_08

Once we know the NODE file for this GP, we grep out again the results. For PS

grep NWECHKEVO:PS NODE.008_08

NWECHKEVO:PS 13 000   0.11505382282124E+02   0.99248519555856E+05
+NWECHKEVO:PS 13 001   0.11505380867601E+02   0.99248379166582E+05
+NWECHKEVO:PS 13 002   0.11505354069965E+02   0.99245719580317E+05
+NWECHKEVO:PS 13 003   0.11505387331977E+02   0.99249020747545E+05
+NWECHKEVO:PS 13 004   0.11505409155285E+02   0.99251186713122E+05
+NWECHKEVO:PS 13 005   0.11505330599600E+02   0.99243390274322E+05
+NWECHKEVO:PS 13 006   0.11505214514108E+02   0.99231870225232E+05
+NWECHKEVO:PS 13 007   0.11505186261496E+02   0.99229066705312E+05
+NWECHKEVO:PS 13 008   0.11505301938506E+02   0.99240545891039E+05
+NWECHKEVO:PS 13 009   0.11505222637195E+02   0.99232676297636E+05
+NWECHKEVO:PS 13 010   0.11505173119706E+02   0.99227762666337E+05

the second column is the GP number, the third the time step, the fourth is log(Ps) and the fith is fo Ps (Pa)

For the upper-air variables we do

grep 'NWECHKEVO:UA 13' NODE.008_08 

NWECHKEVO:UA 13 000 001   0.14364086697030E-04  -0.50805426278410E-05   0.22599560795742E+03   0.00000000000000E+00   0.80040376159261E-07
+NWECHKEVO:UA 13 000 002   0.33741231171738E-05   0.97134353537265E-05   0.21290057631960E+03   0.00000000000000E+00   0.29001061928223E-06
+NWECHKEVO:UA 13 000 003   0.69003223306262E-05  -0.10070828988605E-04   0.21384249855800E+03   0.00000000000000E+00   0.47109613483406E-06
+NWECHKEVO:UA 13 000 004  -0.30497765593290E-06   0.82334865627784E-05   0.21374844679188E+03   0.00000000000000E+00  -0.26145222191521E-06
+NWECHKEVO:UA 13 000 005   0.26070697062412E-04  -0.12291493034515E-04   0.21545103834209E+03   0.00000000000000E+00   0.39088530137662E-05
+NWECHKEVO:UA 13 000 006   0.15371311363862E-04   0.52048057489868E-05   0.21791733622236E+03   0.00000000000000E+00   0.81362351433664E-05
+NWECHKEVO:UA 13 000 007   0.51032970986510E-04  -0.13111824709755E-04   0.22004808804352E+03   0.00000000000000E+00   0.15756687491581E-04
+NWECHKEVO:UA 13 000 008  -0.19648225032526E-04  -0.10918787276801E-04   0.22163556827039E+03   0.00000000000000E+00   0.64289394144994E-05
+NWECHKEVO:UA 13 000 009  -0.17176145579185E-05   0.45899398495276E-04   0.22275608584458E+03   0.00000000000000E+00  -0.10037800019117E-04
+....
+NWECHKEVO:UA 13 000 056   0.13986028555310E-02  -0.66909930879866E-03   0.28628543762220E+03   0.00000000000000E+00   0.54829685721891E-03
+NWECHKEVO:UA 13 000 057   0.14038615170298E-02  -0.75779689206785E-03   0.28663735655175E+03   0.00000000000000E+00   0.59806781225837E-03
+NWECHKEVO:UA 13 000 058   0.13261896477891E-02  -0.74616001898282E-03   0.28698938510509E+03   0.00000000000000E+00   0.49588753382099E-03
+NWECHKEVO:UA 13 000 059   0.14489950905375E-02  -0.74227210464472E-03   0.28734520941903E+03   0.00000000000000E+00   0.27710629383431E-03
+NWECHKEVO:UA 13 000 060   0.17744491137974E-02  -0.61965914425958E-03   0.28761932093752E+03   0.00000000000000E+00   0.40814002634823E-03
+NWECHKEVO:UA 13 000 061   0.19899360944093E-02  -0.54623343124852E-03   0.28790566719217E+03   0.00000000000000E+00   0.47915020836391E-03
+NWECHKEVO:UA 13 000 062   0.23402553668209E-02  -0.78436980306753E-03   0.28827960078154E+03   0.00000000000000E+00   0.37896218758797E-03
+NWECHKEVO:UA 13 000 063   0.20467568555637E-02  -0.11207508904165E-02   0.28854880261461E+03   0.00000000000000E+00   0.46291124700252E-03
+NWECHKEVO:UA 13 000 064   0.16656728750091E-02  -0.10495856132860E-02   0.28883596008959E+03   0.00000000000000E+00   0.25911350987737E-03
+NWECHKEVO:UA 13 000 065   0.14631444722784E-02  -0.94533311737612E-03   0.28903858779818E+03   0.00000000000000E+00   0.64914638106075E-05

which gives at timestep 0 ( third col.) the profile (model level is fourth column) for HVor(s-1), Hdiv (s-1), T (K), PD (Pa for NPDVAR=2) and VD (units depend on NVDVAR definition)

Consecutive timesteps follow

NWECHKEVO:UA 13 001 001   0.14391950814966E-04  -0.10126750142077E-04   0.22601300427477E+03   0.26233794693211E-05   0.13011272170719E-05
+NWECHKEVO:UA 13 001 002   0.35975280461999E-05   0.30191811529161E-05   0.21293465156805E+03  -0.29989147375432E-04   0.10063954562282E-06
+NWECHKEVO:UA 13 001 003   0.79264193785264E-05  -0.15031046611816E-04   0.21385134119954E+03  -0.33856415073342E-04   0.42661347477312E-05
+NWECHKEVO:UA 13 001 004   0.21090675053822E-05   0.31713133370971E-05   0.21377935010403E+03  -0.40445121858208E-04  -0.54989449665528E-05
+NWECHKEVO:UA 13 001 005   0.30451493480920E-04  -0.18284403001908E-04   0.21545646796919E+03  -0.42130887042681E-04   0.14684047934687E-04
+....

up to timestep 180 (hard-coded,the first 3 hours if timestep 1 minute)

Plotting

The results are easily plotted with any graphs utility (e.g. gnuplot)

diff --git a/previews/PR1153/DataAssimilation/ObservationOperators/index.html b/previews/PR1153/DataAssimilation/ObservationOperators/index.html new file mode 100644 index 0000000000..7b303bc9b4 --- /dev/null +++ b/previews/PR1153/DataAssimilation/ObservationOperators/index.html @@ -0,0 +1,107 @@ + +HOP_DRIVER · Harmonie wiki
GitHub

Observation operators

This documentation summarises the observation operator in HARMONIE and the use of the HOP_DRIVER tool. The test harness, HOP_DRIVER, calls the observation operator and generates FG departures without calling any model code or initialising any model modules. Firstly, the IFS is used to dump a single-observation gom_plus to file from the 1st trajectory of an experiment. Dumping multiple observations would require a more complex and full-featured dump (good file format, multi-process parallel). For code refactoring HOP_DRIVER can be used to test changes to the observation operator of a particular observation type.

HARMONIE and HOP_DRIVER

The HOP_DRIVER program was first added to CY42R2 code. The tool was initially implemented to test refactoring of the IFS observation operator code src/arpifs/op_obs/hop.F90. Instructions on how to prepare the code and run HOP_DRIVER using HARMONIE are outlined below. Presentation made at [wiki:HirlamMeetings/ModelMeetings/ObOpWorkshop OOPS Observation Operator Workshop] may provide some useful background information.

Comments on the branch

  • Code changes were required in order to compile cy42r2bf.04 + mods (provided by MF/ECMWF) in the HARMONIE system: [14312], [14325], [14326], [14330], [14331], [14332], [14333], [14334].
  • Changes were made to makeup in order to compile HOP_DRIVER correctly: [14310], [14327], [14328], [14329], [14335], [14362], [14382], [14392].
  • Included in [14362] is a change to ODBSQLFLAGS which is set to ODBSQLFLAGS=-O3 -C -UCANARI -DECMWF $(ODBEXTRAFLAGS) in order to use ECMWF flavoured ODB used by HOP_DRIVER
  • On cca GNU compilers 4.9 are not fully supported, ie I had to build GRIB-API and NetCDF locally using gcc/gfortran 4.9 on cca
  • An environment variable, HOPDIR, is used to define the location of necessary input data for HOP_DRIVER
  • An environment variable, HOPCOMPILER, is used by the HOP_driver script to define the compiler used. This is used to compare results.

HOPOBS: amsua

Currently there is only one observation type, AMSU-A (HOPOBS=amsua), available for testing with HOP_DRIVER. Alan Geer (ECMWF) has already carried out the refactoring of the HOP code related to AMSU-A observations. A single observation is provided in the ECMA and is used to test the refactoring of the HOP code. To carry out the testing of the amsua refactoring HOPOBS should be set to amsua in ecf/config_exp.h.

reportype@hdrobstype@hdrsensor@hdrstatid@hdrstalt@hdrdate@hdrtime@hdrdegrees(lat)degrees(lon)report_status@hdrdatum_status@bodyobsvalue@bodyvarno@bodyvertco_type@body
100773' 4'832800!20140131215914-29.59060.3113112173.281193
100773' 4'832800!20140131215914-29.59060.3113112158.861193
100773' 4'832800!20140131215914-29.59060.311313227.401193
100773' 4'832800!20140131215914-29.59060.311313260.821193
100773' 4'832800!20140131215914-29.59060.311311256.901193
100773' 4'832800!20140131215914-29.59060.311311239.601193
100773' 4'832800!20140131215914-29.59060.3113112NULL1193
100773' 4'832800!20140131215914-29.59060.311313217.691193
100773' 4'832800!20140131215914-29.59060.311311209.391193
100773' 4'832800!20140131215914-29.59060.311311214.051193
100773' 4'832800!20140131215914-29.59060.311311223.021193
100773' 4'832800!20140131215914-29.59060.311311234.421193
100773' 4'832800!20140131215914-29.59060.311311245.141193
100773' 4'832800!20140131215914-29.59060.311311257.181193
100773' 4'832800!20140131215914-29.59060.3113112227.911193

HOP_DRIVER

Using HOP_DRIVER

With LHOP_RESULTS=.TRUE. HOP_DRIVER will write results to a file called hop_results${MYPROC} for comparison between online and offline results. (The results file is opened by src/arpifs/var/taskob.F90. HOP_DRIVER results are written to hop_results${MYPROC} in src/arpifs/op_obs/hop.F90:

 :
+ :
+IF(LHOP_RESULTS) THEN
+!$OMP CRITICAL
+  ! Output for comparison between online and offline results:
+  WRITE(CFILENAME,'("hop_results",I4.4)') MYPROC
+  OPEN(NEWUNIT=IU,FILE=CFILENAME,POSITION='APPEND',ACTION='WRITE',FORM='FORMATTED')
+  DO JOBS = 1,KDLEN
+    DO JBODY=1,IMXBDY
+      IF (JBODY>ICMBDY(JOBS)) CYCLE
+      IBODY = ROBODY%MLNKH2B(JOBS)+(JBODY-1)
+      WRITE(IU,'(6I8,2F30.14)') MYPROC, KSET, JOBS, NINT(ROBHDR%DATA(JOBS,ROBHDR%SEQNO_AT_HDR)),&
+        & NINT(ROBODY%DATA(IBODY,ROBODY%VERTCO_REFERENCE_1_AT_BODY)), &
+        & NINT(ROBODY%DATA(IBODY,ROBODY%VARNO_AT_BODY)), ZHOFX(JOBS,JBODY), ZXPPB(JOBS,JBODY)
+
+    ENDDO
+  ENDDO
+  CLOSE(IU)
+!$OMP END CRITICAL
+ENDIF
+ :
+ :

The HOPdriver script (based a script provided by MF) sorts the contents of the `hopresults0001` file for comparison with some results made available by ECMWF/MF:

 :
+ :
+#
+# Check HOP_DRIVER results (available for gfotran and intel)
+#
+ln -s $HOPDIR/${HOPOBS}/results.$HOPCOMPILER .
+cat hop_results* | sort -k1,1n -k2,2n -k3,3n -k5,5n -k6,6n > results.driver
+echo
+cmp -s results.$HOPCOMPILER results.driver
+if [ $? -eq 0] ; then
+  echo "RESULTS ARE STRICTLY IDENTICAL TO THE REFERENCE FOR HOPCOMPILER=$HOPCOMPILER :-)"
+else
+  echo Compare exactly against the results dumped from hop:
+  echo "xxdiff results.$HOPCOMPILER results.driver &"
+  diff results.$HOPCOMPILER results.driver
+  exit 1
+fi
+ :
+ :

On cca you will find useful output from HOP_DRIVER in cca:$TEMP/hm_home/rfexp/archive/HOPDRIVEROUT:

fort.4
+NODE.001_01
+hop_results0001
+results.gfortran
+results.driver

The code

HOP_DRIVER is a short program written by Deborah Salmond (ECMWF) to test code changes made to the observation operator. The program src/arpifs/programs/hop_driver.F90 is summarised here.

  • The program sets up the model geometry and observations:
 :
+ :
+CALL GEOMETRY_SET(YRGEOMETRY)
+CALL MODEL_SET(YRMODEL)
+
+CALL IFS_INIT('gc7a')
+
+CALL SUINTDYN
+
+CALL SUGEOMETRY(YRGEOMETRY)        !From GEOMETRY_SETUP
+
+CALL SURIP(YRGEOMETRY%YRDIM)             !From MODEL_CREATE
+
+! Set up Observations, Sets
+CALL SUDIMO(YRGEOMETRY,NULOUT)     !From SU0YOMB
+CALL SUOAF              !From SU0YOMB
+CALL SUALOBS            !From SU0YOMB
+CALL SURINC             !From SU0YOMB
+CALL SETUP_TESTVAR      !From SU0YOMB
+CALL SUOBS(YRGEOMETRY)              !From CNT1
+CALL ECSET(-1,NOBTOT,0) !From OBSV
+CALL SUPHEC(YRGEOMETRY,NULOUT)
+
+! Setup varbc (from cnt1.F90) and read VARBC.cycle
+CALL YVARBC%SETUP_TRAJ
+ :
+ :
  • HOP_DRIVER then loops over the number of observation sets (NSETOT) and reads a GOM PLUS for each observation set. HRETR and HOP are then called:
 :
+ :
+DO ISET=1,NSETOT
+  IDLEN   = MLNSET(ISET)
+  IMXBDY = MAX(MMXBDY(ISET),1)
+
+  ALLOCATE(ZHOFX(IDLEN,IMXBDY))
+  ZHOFX=RMDI
+
+  ! READ GOM_PLUS FROM DUMP
+  CALL GOM_PLUS_READ_DUMP(YGP5,ISET)
+
+  IF(IDLEN /= YGP5%NDLEN) THEN
+    CALL ABOR1('Sets are incompatible')
+  ENDIF
+
+  :
+  :
+  :
+
+  CALL HRETR(YRGEOMETRY%YRDIMV,IDLEN,IMXBDY,ISET,1,YGP5,YVARBC)
+
+  CALL HOP(YRGEOMETRY%YRDIMV,YGP5,YVARBC,IDLEN,IMXBDY,ISET,1,LDOOPS=.TRUE.,PHOFX=ZHOFX)
+
+  !write(0,*)'ZHOFX',ZHOFX
+  DEALLOCATE(ZHOFX)
+
+  CALL GOM_PLUS_DESTROY(YGP5)
+
+ENDDO
+
+ :
+ :
diff --git a/previews/PR1153/DataAssimilation/Screening/index.html b/previews/PR1153/DataAssimilation/Screening/index.html new file mode 100644 index 0000000000..06b5bce760 --- /dev/null +++ b/previews/PR1153/DataAssimilation/Screening/index.html @@ -0,0 +1,6 @@ + +Screening · Harmonie wiki
GitHub

Screening

Introduction

Screening (configuration 002 of ARPEGE/IFS model) carries out quality control of observations.

A useful presentation (Martin Ridal) from the "Hirlam-B Training Week on HARMONIE system" training course is available here: MR_screenandminim.pdf. Most of the information on this page is based on his presentation.

Inputs

  • First guess (the same file with 5 different names):

    • ICMSHMIN1INIT
    • ICMSHMIN1IMIN
    • ICMRFMIN10000
    • ELSCFMIN1ALBC000
    • ELSCFMIN1ALBC

  • Input/output ODB directory structure

    • ${d_DB}/ECMA
    • ${d_DB}/ECMA.${base1}

  • Constants and statistics (MAY NEED TO BE UPDATED)

    • correl.dat
    • sigmab.dat
    • rszcoef_fmt
    • errgrib
    • rt_coef_atovs_newpred_ieee.dat
    • bcor_noaa.dat
    • chanspec_noaa.dat
    • rmtberr_noaa.dat
    • cstlim_noaa.dat

  • Namelist: See %screening in nam/harmonie_namelists.pm

Screening tasks

(Based on Martin Ridal's presentation).

  • Preliminary check of observations
    • Check of completeness of the reports
    • Check if station altitude is present
    • Check of the reporting practice for SYNOP & TEMP mass observations
  • Blacklisting: A blacklist is applied to discard observations of known poor quality and/or that cannot be properly handled by the data assimilation. A selection of variables for assimilation is done using the data selection part of the blacklist file and the information hard-coded in Arpege/Aladin (orographic rejection limit, land-sea rejection...). Decisions based on the blacklist are feedback to the CMA. Blacklisting is defined in src/bla/mf_blacklist.b
  • Background quality control: flags are assigned to observations – 1 => probably correct, 2 => probably incorrect, 3 => incorrect.
  • Vertical consistency of multilevel report:
    • The duplicated levels, in multi-level reports, are removed from the reports
    • If 4 consecutive layers are found to be of suspicious quality then these layers are rejected
  • Removal of duplicated reports
    • In case of co-located airep reports of the same observation types (time, position), some or all of the content of one of the reports is rejected
  • Redundancy check
    • performed for active reports that are co-located and originate from the same station
    • LAND SYNOP: the report closest to the centre of the screening time window with most active data is retained
    • SHIP SYNOP: redundant if the moving platforms are within a circle of 1^o^ radius src/arpifs/obs_preproc/sufglim.F90 RSHIDIS = 111000._JPRB
    • TEMP and PILOT: same stations are considered at the same time in the redundancy check
    • A SYNOP mass observation is redundant if there are any TEMP geopotential height observations (made in the same time and the same station) that are no more than 50hPa above the SYNOP mass observation
  • Thinning: High resolution data needs to be reduced to reduce correlated errors and reduce the amount of data

Output

The quality control information will be put into the input ECMA ODB(s) and a newly created CCMA to used by the 3DVAR minimization.

A valuable summary about screening decisions can be found in HM_Date_YYYYMMDDHH.html:

  • Look for “SCREENING STATISTICS” to get:
    • STATUS summary
    • EVENT summary
    • Number of variables, departures and missing departures
    • Diagnostic JO-table
    • CCMA ODB and updated ECMA ODB

Screening Events listed under "EVENT SUMMARY OF REPORTS:"

Description
1NO DATA IN THE REPORT
2ALL DATA REJECTED
3BAD REPORTING PRACTICE
4REJECTED DUE TO RDB FLAG
5ACTIVATED DUE TO RDB FLAG
6ACTIVATED BY WHITELIST
7HORIZONTAL POSITION OUT OF RANGE
8VERTICAL POSITION OUT OF RANGE
9TIME OUT OF RANGE
10REDUNDANT REPORT
11REPORT OVER LAND
12REPORT OVER SEA
13MISSING STATION ALTITUDE
14MODEL SUR. TOO FAR FROM STAT. ALT.
15REPORT REJECTED THROUGH THE NAMELIST
16FAILED QUALITY CONTROL
diff --git a/previews/PR1153/DataAssimilation/SingleObs/index.html b/previews/PR1153/DataAssimilation/SingleObs/index.html new file mode 100644 index 0000000000..0ff6babe21 --- /dev/null +++ b/previews/PR1153/DataAssimilation/SingleObs/index.html @@ -0,0 +1,16 @@ + +Single Obs · Harmonie wiki
GitHub

Single observation impact experiment

General

The results of single observation impact experiment provide useful information of the observation operator and error statistics. Among others, it is a useful tool for diagnosing background error statistics. The procedure described below is the recommended one and it has been tested on HARMONIE harmonie-43h21. The example below with the new system is for a AROME domain covering Denmark (DOMAIN=DKCOEXP). Three TEMP observation types have been implemented in scr/Create_singe_obs as deviations to the background:

  • A temperature increase of 1K
  • A wind speed increase of 1 m/s
  • A specific humidity reduction to 90% of the background.

Illustrative example of single observation impact experiment on ECMWF

  1. Folow instructions to create an experiment e.g. at ECMWF.

  2. Edit ecf/config_exp.h as follows:

    • set ANASURF=none,
    • set SINGLEOBS=yes,
    • set LSMIXBC=no,

  3. Edit scr/include.ass as follows:

    • set USEOBSOUL=1,

  4. Do a checkout of bator_lectures_mod.F90 

    ./Harmonie co src/odb/pandor/module/bator_lectures_mod.F90

    and change lines 296-300 to use the free format 

    296 READ (NULOBI,*,iostat=iret) &
+297           & ival1,iotp,ioch,zval1,zval2,cval,ival2,ival3,zval3,inbw,ival1,ival1,&
+298           & (ztval(:),j=1,inbw)
+299 
+300   !READ(NULOBI,*,iostat=iret) (ztval(:),j=1,inbw)

  5. In Env_submit set 

    34 if ( $job eq 'Forecast' or $job eq 'Dfi' or $job eq 'Listen2file' ) {
+35  $nprocx=16;
+36  $nprocy=31;
+37 } else {
+38  $nprocx=1;
+39  $nprocy=1;
+40 }

  6. Launch the single observation impact experiment:

    ./Harmonie start DTG=2012061003 DTGEND=2012061006

  7. The resulting analysis file be found as $SCRATCH/hm_home/<exp>/archive/2012/06/10/06/MXMIN1999+0000. You can now diagnose the 3D-VAR analysis increments of the sinob-experiment taking the difference between the analysis MXMIN1999+0000 (analysis) and the first guess, $SCRATCH/hm_home/<exp>/archive/2012/06/10/03/ICMSHHARM+0003. Plot horizontal and vertical cross-sections of temperature and other variables using your favorite software (EpyGram for example).

Note that you can change position of observation, observation error, variable to be observed etc. Investigate these options by taking a closer look at the script Create_single_obs.

Read more about radiance single observation experiments here. In ec:/smx/sinob_wiki_ml you will also find OBSOUL_amsua7, a file for generating a satellati radiance amsu a channel 7 single observation impact experiment.

diff --git a/previews/PR1153/DataAssimilation/StructureFunctions/index.html b/previews/PR1153/DataAssimilation/StructureFunctions/index.html new file mode 100644 index 0000000000..94b1efccf5 --- /dev/null +++ b/previews/PR1153/DataAssimilation/StructureFunctions/index.html @@ -0,0 +1,93 @@ + +Structure functions · Harmonie wiki
GitHub

Derivation of Structure Functions

General

For each new model domain, in order to carry out upper air data assimilation (3DVAR or 4DVAR) one needs to generate background error covariances (generally referred to as structure functions). The recommended procedure is to use a two step approach. In step one you generate background error statistics by downscaling (this is needed since you do not have have statistics for your domain setup for this forecast model version and physics options, so that you cannot run data-assimilation (unless you use statistics from old system possibly derived from a slighthly different domain and with a different model version, which is not recommended). In step 2 you then use the statistics derived in step 1 to generate the final background error statistics files by applying ensemble data assimilation within the HARMONIE-AROME modelling system.

In step 1 structure functions are generated from difference fields from ensemble members of HARMONIE-AROME forecast. These are obtained from downscaling of ECMWF EDA ensemble forecast. To alleviate spin-up issues, these phase 1 downscaled HARMONIE-AROME forecasts are run up to 6 hours, and differences are generated from these. Using the ECMWF LBC data, 6h HARMONIE ensemble forecasts are initiated from ECMWF 6h forecasts daily from 00 UTC and 12 UTC, with ECMWF forecasts as initial and lateral boundary conditions. To obtain stable statistics, it is recomended to run 4 ensembles for two chosen one-month episode (s). The episodes should sample different seasons. Therefore it is recommended to run for one winter month and one summer month, for example June 2016 and January 2017. These periods are chosen so as to benefit from the latest upgrade to ECMWF's EDA system. Thereby we sample both seasonal (January, July) and daily (00 UTC and 12 UTC) variations. After running of the ensembles the archived results (6h forecasts) are processed to generate structure functions by running a program called 'festat'. Festat will be run automatically within the SMS system when DTGEND is approached by an experiment and the statistics will be based on difference files generated by intermediate program femars and stored on ecfs in ec:/$uid/harmonie/$exp/femars (software to generate binary GRIB files of forecasts differences after each cycle). This will mean that if you start by running a one month experiment for January the structure functions generated when you reach DTGEND will be for January. When you use the same experiment name and launch also an experiment for July you will when you reach DTGEND have background error statistics based on both January and July differences files (since both of those are now found in ec:/$uid/harmonie/$exp/femars). These combined winter/summer background error statistics files from phase one are final product from step 1 and can are the intermediate background error statistics files to plug into the HARMONIE-AROME data assimilation of step 2. It should be mentioned that there is a possibility for the more advanced user to run festat off-line and with any combinations of January-July forecast difference files from ec:/$uid/harmonie/$exp/femars. That will be described in ore detail further below and is something you might want to do with forecasts difference files generated from step 2 to produce monthly background error statistics files by combining in different ways.

In step 2 we run again two one-month ensemble experiments for the same Januar and July months again utilizing ECMWF EDA forecasts as lateral boundary conditions. Again you use 4 ensemble members. The important difference as compared to step 1 is that you now carry out ensemble-data assimilation also within the HARMONIE-AROME framework. You use the background error statistics from phase 1 and do the eda within a data assimilation cycle. This has the important advantage that you significantly reduce spinup caused by the HARMONIE-AROME model adjustments to ECMWF EDA starting initial states. Because of this we can in step 2 derive the statistics from +3h forecast difference (rather than +6 that is used in step 1).

Note that there are methods to circumvent step1 and to technically run 3/4DVAR using structure functions derived from another HARMONIE model domain. Such existing methods include aspects such as horizontal truncation or extrapolation of horizontal spectra and possibly vertical interpolation in between vertical level geometries. Since the recommended procedure is to use the two stp approach described above these alternative methods are not described in detail. Furthermore it should be noted that there are background error covariance related tuning coefficients REDNMC and REDZONE. Settings of values of these ae not covered here. If you have a new domain you will use the default value 0.6 for REDNMC and 100 for REDZONE which are considered apropiate values for the derivation of structure functions. If you re-derive your statistics for an existing domain you will use the REDNMC and REDZONE values as assigned in scr/include.ass.

There are various existing tools for investigating your newly derived structure functions and at the end of this page there are some documentation of existing tools and how to use them.

The procedure for generating structure functions from an ensemble of forecasts is described below for a AROME setup with 2.5 km horizontal resolution and 65 vertical levels. The experiment is run for a one mont winter-period of followed by a one month summer-period on the ECMWF computing system. Forecast differences are derived twice a day (00 forecasts from 12 UTC) from combinations of the four ensemble members. Besides the scientific recommendation to cover many different weather situations there is as well a matemathical constraint that the number of forecast difference files provided to festat needs to be larger than the number of vertical levels used in the forecast model integration. In the section below detailed instructions on how to generate the structure functions are given. The other sections deals with how to diagnose the structure functions recent and ongoing work and future development plans.

It is recommended for future coming enhancements regarding handling of B statistics and diagnostics of it to save all generated forecast difference files as well as stabal.cv, stabal.cvt and stabal.bal and generated .xy and .y files (.cvt .xy and .y for diagnotical puroposes):

Generating background error statistics (using 43h2.2)

The following instructions are valid for trunk and any 43h2.2 tags that have been created. These instructions will only work at ECMWF. If you do have a new domain (or are not sure) you should follow that route in step 1 below. New domain creation is described in ModelDomain which links to the useful Domain Creation Tool

STEP 1 Downscaling

  1. Create a new experiment on ECMWF:

    In case you do have an existing domain setup do:

    mkdir -p $HOME/hm_home/jbdownexp
+cd $HOME/hm_home/jbdownexp
+~hlam/Harmonie setup -c JBDSC -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1 -d DOMAIN # where domain is the    name of your domain

    In case you are creating structure functions for a new domain (or you are not sure):

    mkdir -p $HOME/hm_home/jbdownexp
+cd $HOME/hm_home/jbdownexp
+~hlam/Harmonie setup -c JBDSC -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1
+~hlam/Harmonie co scr/Harmonie_domains.pm

    Then edit scr/Harmonie_domains.pm and add your new domain definition.

  2. The ensemble that will be used to generate the structure functions needs to be defined in suites/harmonie.pm. An edited ensemble configuration file should define a four member ensemble that only varies the boundary memeber input (ENSBDMBR) as follows:

    %env = (
+#   'ANAATMO'  => { 0 => '3DVAR' },
+#   'HWRITUPTIMES' => { 0 => '00-21:3,24-60:6' },
+#   'SWRITUPTIMES' => { 0 => '00-06:3' },
+#   'HH_LIST' => { 0 => '00-21:3' },
+#   'LL_LIST' => { 0 => '36,3' },
+#   'LSMIXBC'  => { 0 => 'no' },
+#   'ANASURF'  => { 0 => 'CANARI_OI_MAIN' },
+   'ENSCTL'   => [ '001', '002', '003', '004'],
+#   'OBSMONITOR' => [ 'obstat'],
+# SLAFLAG: Forecast length to pick your perturbation end point from
+# SLAFDIFF: Hours difference to pick your perturbation start point from
+# SLAFLAG=24, SLAFDIFF=6 will use +24 - +18
+# SLAFDIFF=SLAFLAG will retain the original SLAF construction
+# SLAFK should be tuned so that all members have the same perturbation size
+   'ENSBDMBR' => [ 1,2,3,4],
+#   'SLAFLAG'  => [    0,    6,     6,    12,    12,  18,     18,   24,    24,    30,    30],
+#   'SLAFDIFF' => [    0,    6,     6,     6,     6,    6,     6,    6,     6,     6,     6],
+#   'SLAFK'    => ['0.0','1.75','-1.75','1.5','-1.5','1.2','-1.2','1.0','-1.0','0.9','-0.9'],
+# When using ECMWF ENS the members should be defined
+#   # 'ENSBDMBR' => [ 0, 1..10],
+
+### Normally NO NEED to change the settings below

  3. Run for two one-month (30 day) periods:

    cd $HOME/hm_home/jbdownexp
+~hlam/Harmonie start DTG=2016060100 DTGEND=2016070100
+#
+#~hlam/Harmonie start DTG=2017010100 DTGEND=2017013100

  4. Generate the statistics using festat standalone:

    • Place yourself at $TEMP on ECMWF

    • Copy Festat.standalone to $TEMP on ECMWF

    • Edit the script to reflect your user and experiment details (in particular copy femars data ec:/$uid/harmonie /jbdownexp/femars/ to your femars-directory on $TEMP)

      submit with

      qsub ./Festat.standalone

      you will get a log-file festat.log on $TEMP and results in directory festat_wrk. when the program has finished do:

      cd festat_wrk
+emkdir ec:/$uid/jbdata
+gzip stab_your_exp.cv
+gzip stab_your_exp.bal
+ecp stab_your_exp.cv.gz ec:/$uid/jbdata/.  (with your own filename and directory)
+ecp stab_your_exp.bal.gz ec:/$uid/jbdata/. (with your own filename and directory)

    (also create a tar.file with all *.xy *.y *.cv, *.bal and *.cvt and put on ecfs for future diagnostical purposes)

STEP 2 Generating background error statistics with EDA cycling (instructions under testing)

  1. Create a new experiment on ECMWF:

    In case you do have an existing domain setup do:

    mkdir -p $HOME/hm_home/jbedaexp
+cd $HOME/hm_home/jbedaexp
+~hlam/Harmonie setup -c AROME_JBEDA -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1 -d DOMAIN # where domain    is the name of your domain

    In case you are creating structure functions for a new domain (or you are not sure):

    mkdir -p $HOME/hm_home/jbedanexp
+cd $HOME/hm_home/jbedaexp
+~hlam/Harmonie setup -c AROME_JBEDA -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1
+~hlam/Harmonie co scr/Harmonie_domains.pm

    Then edit scr/Harmonie_domains.pm and add your new domain definition.

  2. The ensemble that will be used to generate the structure functions needs to be defined in suites/harmonie.pm. An edited ensemble configuration file should define a four member ensemble that only varies the boundary memeber input (ENSBDMBR) as follows:

    %env = (
+#   'ANAATMO'  => { 0 => '3DVAR' },
+#   'HWRITUPTIMES' => { 0 => '00-21:3,24-60:6' },
+#   'SWRITUPTIMES' => { 0 => '00-06:3' },
+#   'HH_LIST' => { 0 => '00-21:3' },
+#   'LL_LIST' => { 0 => '36,3' },
+#   'LSMIXBC'  => { 0 => 'no' },
+#   'ANASURF'  => { 0 => 'CANARI_OI_MAIN' },
+   'ENSCTL'   => [ '001', '002', '003', '004'],
+#   'OBSMONITOR' => [ 'obstat'],   
+# SLAFLAG: Forecast length to pick your perturbation end point from
+# SLAFDIFF: Hours difference to pick your perturbation start point from
+# SLAFLAG=24, SLAFDIFF=6 will use +24 - +18
+# SLAFDIFF=SLAFLAG will retain the original SLAF construction
+# SLAFK should be tuned so that all members have the same perturbation size
+   'ENSBDMBR' => [ 1,2,3,4],
+#   'SLAFLAG'  => [    0,    6,     6,    12,    12,  18,     18,   24,    24,    30,    30],
+#   'SLAFDIFF' => [    0,    6,     6,     6,     6,    6,     6,    6,     6,     6,     6],
+#   'SLAFK'    => ['0.0','1.75','-1.75','1.5','-1.5','1.2','-1.2','1.0','-1.0','0.9','-0.9'],
+# When using ECMWF ENS the members should be defined
+#   # 'ENSBDMBR' => [ 0, 1..10],
+
+### Normally NO NEED to change the settings below

  3. Link to your newly generated Jb statistics from STEP1 :

    Edit in $HOME/hm_home/jbedaexp/scr/include.ass as follows (example for DOMAIN=METCOOP25D): In the section for your relevant domain point to the structure function stored in STEP one as follows:

     elif [ "$DOMAIN" = YOUR DOMAIN]; then
+   JBDIR=${JBDIR-"ec:/hirlam/harmonie_jbdata"}
+   JBDIR=ec:/$uid/jbdata
+   f_JBCV=stabfiltn_your_exp.cv_jbconv.cv (without .gz)
+   f_JBBAL=stabfiltn_your_exp.bal_jbconv.bal (without.gz)

  4. Run for two one-month (30 day) periods:

    cd $HOME/hm_home/jbedaexp
+~hlam/Harmonie start DTG=2016060100 DTGEND=2016070100
+#
+#~hlam/Harmonie start DTG=2017010100 DTGEND=2017013100

  5. Generate the statistics using festat standalone:

    • Place yourself at $TEMP on ECMWF
    • Copy Festat.standalone to $TEMP at ECMWF
    • Edit the script to reflect your user and experiment details (in particular copy femars data ec:/$uid/harmonie/jbdownexp/femars/ to femars-directory on $TEMP)
    • Make sure you have removed old femars_wrk directory and only have forecast differences from you EDA experiment in your femars directory As well preferably name files differently than in STEP 1 downscaling. 
 submit with 
+
+ ```bash
+ qsub ./Festat.standalone
+ ```
+ 
+ you will get a log-file `festat.log` on `$TEMP` and results in directory `festat_wrk`
+ when the program has finished do:
+ 
+ ```bash
+ cd festat_wrk
+ emkdir ec:/smx/jbdata (with smx replaced with your own user id) 
+ gzip stab_your_eda_exp.cv
+ gzip stab_your_eda_exp.bal
+ ecp stab_your_eda_exp.cv.gz ec:/smx/jbdata/.  (with your own filename and directory)
+ ecp stab_your_eda_exp.bal.gz ec:/smx/jbdata/. (with your own filename and directory)
+ ```
+
+ also create a tar-file with all `*.xy`, `*.y`, `*.cv`, `*.bal` and `*.cvt` and put on ecfs for future diagnostical purposes) These new files are you final background error statistics to be diagnosed (compared with STEP 1 ones perhaps) and inserted to your data assimilation by modyfying `include.ass` (as in bullet 3 above) to point to your new files.

Diagnosis of background error statistics

  1. Diagnosis of background error statistics is a rather complicated task. To get an idea of what the correlations and covariances should look like take a look in the article: Berre, L., 2000: Estimation of synoptic and meso scale forecast error covariances in a limited area model. Mon. Wea. Rev., 128, 644-667. Software for investigating and graphically illustrate different aspects of the background error statistics has been developed and statistics generated for different domains has been investigated using the AccordDaTools package. With this software you can also compare your newly generated background error statistics with the one generated for other HARMONIE domains. This will give you and idea if your statistics seems reasonable. For diagnosing the newly derived background error statistics follow these instructions:

  2. Get the code and scripts:

    • Download and install AccordDaTools following instructions in the README
    • Don't forget to add the package tools directory to your PATH:
    • export PATH=/path/to/da_tools:$PATH

  3. Run Jb diagnostics script:

    • For example for a new domain using horizontal grid-spacing of 2500 m and (Harmonie) 65 vertical levels:
      jbdiagnose -b jb_data/stab_IRELAND25_064_480.bal -c jb_data/stab_IRELAND25_064_480.cv -g 2500 -l harmL65 -e jbdiag_IRELAND25_064
    • The output will be made written to jbdiag_IRELAND25_064

  1. The AccordDaTools package also provides two tools for plotting the data produced by jbdiagnose, plotjbbal and plotjbdiag. plotjbbal plots Jb balances for different parameters. plotjbdiag produces spectral density (spdens) and vertical correlation (vercor) diagnostic plots for your structure funtions. For example:

    • plotjbbal:

      plotjbbal -t stdv -p QQ -r jbdiag_ -e IRELAND25_064

    • plotjbdiag:

      plotjbdiag -l 50 -t vercor -p QQ -r jbdiag_ -e IRELAND25_064

Run 3DVAR/4DVAR with the new background error statistics

  1. create hm_home/jb_da. Then cd $HOME/hm_home/jb_da.

  2. create experiment by typing

    ~hlam/Harmonie setup -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1

  3. In scr/include.ass set JBDIR=ec:/$uid/jbdata (uid being your userid, in this example 'ec:/smx/jbdata') and f_JBCV is name of your .cv file in ec:/$uid/jbdata (without .gz) and f_JBBAL is 'name of your .bal file in ec:/$uid/jbdata (without .gz) (in this example, f_JBCV=stab_METCOOPD_65_20200601_360.cv, stab_METCOOPD_65_20200601_360.bal). Add these three lines instead of the three lines in include.ass that follows right after the elif statement: elif [ "$DOMAIN" = METCOOP25D]; then. If domain is other than METCOOP25D one has to look for the alternative name of the domain.

  4. From $HOME/hm_home/jb_da launch experiment by typing

    ~hlam/Harmonie start DTG=2021010100 DTGEND=2021010103

  5. The resulting analysis file be found under $TEMP/hm_home/jb_da/archive/2021/01/01/03 and it will be called MXMIN1999+0000 and on and ec:/$uid/harmonie/2021/01/01/03. To diagnose the 3D-VAR analysis increments of the jb_da-experiment, copy the files MXMIN1999+0000 (analysis) and ICMSHHARM+0003 (fg) to $SCRATCH. The first guess (background) file can be found on $TEMP/hm_home/jb_da/archive/2021/01/01/00 and ec:/$uid/harmonie/jb_da/2021/01/01/00. Convert from FA-file format to GRIB with the gl-software ($SCRATCH/hm_home/jb_da/bin/gl) by typing ./gl -p MXMIN1999+0000 and ./gl -p ICMSHANAL+0000. Then plot the difference between files file with your favorite software. Plot horizontal and vertical cross-sections of temperature and other variables using your favourite software (epygram for example).

  6. Now you have managed to insert the newly generated background error statistics to the assimilation system and managed to carry out a full scale data assimilation system and plot the analysis increments. The next natural step to further diagnose the background error statistics is to carry out a single observation impact experiment, utilizing your newly generated background error statistics. Note the variables REDNMC and REDZONE in include.ass. REDNMC is the scaling factor for the background error statistics (default value 0.6/0.9) for METCOOP25D/NEW_DOMAIN). REDZONE described how far from the lateral boundaries (in km) the observations need to be located to be assimilated (default value 150/100) for METCOOP25D/NEW_DOMAIN.

In-line Interpolation and Extrapolation of Jb-statistics

In case you do not have existing background error statistics derived for your domain there is a built technical possibility to use Jb-files from another domain derived with the same number of vertical levels. From this host Jb-files background error statistics are then interpolated or extrapolated to the current domain configuration. The assumption is then (which is in general questionable) that the statistics derived derived on the host domain is as well valid for the current domain. If the longest side of the host domain is shorter than the longest side of the current domain an extrapolation of background error covariance spectra is needed. Such extrapolation should be avoided over a wide range of wavenumbers. Therefore it is recommended that the longest side of the host Jb-file is as long or longer than the longest side of the current domain.The interpolation is invoked by in ecf/config_exp.h set JB_INTERPOL=yeś and JB_REF_DOMAIN=$HOST_JB, where $HOST_JB is for example METCOOP25B. These settings will activate runnning of script jbconv.sh (in case no Jb files present for current domain), called from Fetch_assim_data.

On-going work & future developments

Recent and on-going work as well as plans for future developments:

  • Ongoing-work regarding structure functions concerns investigations of effects on B statistics and data assimilation of the upper-level relaxation towards ecmwf at upper boundary condition through LUNBC=.true. Longer term research is towards flow dependent background error statistics and close link between the data assimilation and the ensemble forecasting system. Plans for future work also include adopting towards use of cy46 Festat.standalone, reading FA-files rather than femars-files. Here is a newly developed stand-alone tool for interpolation in of Jb-statistics as well between different vertical levels (not recommended) not yet publicly available and documented. Finally it should be mentioned that there are alternative methods to EDA for carrying out STEP 2 of teh background error statistics derivation. Such alternatives are BRAND and BREND and these have been tested and compared with EDA in various contexts, such as in reanalysis frameworks. The conclusion is that there are both pros and cons with BRAND as compared with EDA. The main conclusion is that both EDAand BRAND are hampered by the homogeneity and isotrophy assumptions in 3DVAR/4DVAR framework, so that differences are smaller than in hybrid DA frameworks. Therefore continued EDA/BRAND comparisons are carried out withing hybrid ensemble/da frameworks. Nevertherless we aim here to include as well instructions for optionally replacing STEP 2 EDA in procedure above with STEP 2 BRAND. As well we aim for introducing instructions for using extended complementary diagnosis tools for Jb statistics using fediacov tool and associated plotting scripts. Such tools do exist, but not yet publicly available and documented

References

diff --git a/previews/PR1153/DataAssimilation/Surface/CANARI/index.html b/previews/PR1153/DataAssimilation/Surface/CANARI/index.html new file mode 100644 index 0000000000..0087f9faf3 --- /dev/null +++ b/previews/PR1153/DataAssimilation/Surface/CANARI/index.html @@ -0,0 +1,20 @@ + +CANARI · Harmonie wiki
GitHub

Surface Data Assimilation Scheme: Canari

Introduction

(by Alena.Trojakova)

CANARI stands for Code for the Analysis Necessary for ARPEGE for its Rejects and its Initialization. It is software (part of IFS/ARPEGE source code) to produce an ARPEGE/ALADIN analysis based on optimum interpolation method. The number of ARPEGE/ALADIN configuration is 701. CANARI has the two main components the quality control and an analysis. According to the type of observations the analysis can be:

  • 3D multivariate for U, V, T, Ps
  • 3D univariate for RH
  • 2D univariate for 2m/10m fields
  • soil parameters analysis is based on 2m increments

CANARI can handle following 10 types of observations:

  • SYNOP: Ps, T2m, RH2m, 10m Wind, RR, Snow depth, SST
  • AIREP: P ( or Z), Wind, T
  • SATOB: P, Wind, T - from geostationary satellite imagery
  • DRIBU: Ps, T2m, 10m Wind, SST
  • TEMP: P, Wind, T, Q
  • PILOT: Wind with the corresponding Z, (sometimes 10m Wind)
  • SATEM: Q, T retrieved from radiances- surface

Applications

  • Diagpack - diagnostic of mesoscale features via detailed analysis of PBL using high resolution surface observation with specific tunings:
REF_S_T2  = 3.0,
+REF_S_H2  = 0.20,
+REF_A_H2  = 40000.,
+REF_A_T2  = 40000.,
+...
  • Quality control and verification - VERAL package
  • Surface analysis

Detailed description of the method and technical documentation can be found in the References below. Here follows basic input/output summary and command line arguments.

CANARI procedure

All optional items are controlled by various keys in namelist.

INPUTs

  • The first guess file

    ln -s guess ICMSHANALINIT
+ln -s guess ELSCFANALALBC000

  • The observation database, which requires special variables to be exported

    export ODB_STATIC_LINKING=1
+export TO_ODB_ECMWF=0
+export ODB_CMA=ECMA    ... Database type (ECMA extended CCMA compressed)
+export ODB_SRCPATH_ECMA=...
+export ODB_DATAPATH_ECMA=...
+export IOASSIGN=
+export ODB_MERGEODB_DIRECT= ... optional direct ODB merge, If your ODB was not merged previously use  1

  • Concerning the observation use, another file is necessary, but it is without any interest for CANARI (just part of variational analysis code is not controlled by a logical keyt !) The file can be obtained on "tori" via gget var.misc.rszcoef_fmt.01.

    ln -s rszcoef_fmt var.misc.rszcoef_fmt.01

  • The climatological files

    ln  -s  climfile_${mm}  ICMSHANALCLIM
+ln  -s  climfile_${mm2} ICMSHANALCLI2

  • The namelist file

    ln -s namelist fort.4

  • The ISBA files

    • file used to derive soil moisture from 2m increment

      ln -s POLYNOMES_ISBA fort.61

    • OPTIONAL assimilated increments files to smooth the fields (ICMSHANALLISSEF file is created at the and of analysis )

      ln -s increment_file ICMSHANALLISSE

    • OPTIONAL The SST file - an interpolated NCEP SST analysis on ARPEGE grid and stored in FA file format) used for relaxation towards "up-dated" climatology

      ln -s SST_file ICMSHANALSST

    • OPTIONAL The error statistic file; OI allows to know the variance of the analysis error, which can be used to improve background error next cycle => an option to use "dynamics" statistics instead of fixed. Output file ICMSHANALSTA2 is produced with statistics for the current run

      ln -s statistics_file ICMSHANALSTA

    • OPTIONAL The incremental mode files (global option only); it is possible to read 3 input file to build non-classical init; the combination is done on spectral fields only: G1=G0+A-G

      ln -s G0_file ICMSHANAINIT
+ln -s A_file ICMSHANALANIN
+ln -s G_file ICMSHANALFGIN

run CANARI

MASTERODB -c701 -vmeteo -maladin -eANAL -t1. -ft0 -aeul

  • -c: configuration number (CANARI = 701)
  • -v: version of the code (always "meteo" for ARPEGE/ALADIN)
  • -m: LAM or global model ("aladin" or "arpege")
  • -e: experiment name (ANAL for instance)
  • -t: time-step length (no matter for CANARI, usually "1.", avoid 0.)
  • -f: duration of the integration (t0 or h0 for CANARI)
  • -a: dynamical scheme (does not matter for CANARI Eulerian = eul or semi-Lagrangian = sli (sli as usual))

OUTPUTs

  • OPTIONAL The analysis file
    ICMSHANAL+0000
  • OPTIONALLY updated observational database
    • OPTIONAL The error statistics file
      ICMSHANALSTA2
    • OPTIONAL The increment file
      ICMSHANALLISSEF
    • The output listing - enables checking of various parameters, e.g. number observation of given type (SYNOP,TEMP,..), number of used observation parameters (T2m, RH2m, T, geop., ...), some namelist variables, various control prints (O-G and O-A statistics, ...), grid-point and spectral norms.

NODE*

Sample of script is attached.

As a part of the system training in Copenhagen in 2008, Roger prepared an intoduction to CANARI, which is found in HarmonieSystemTraining2008/Lecture/SurfaceAssimilation on hirlam.org

References

diff --git a/previews/PR1153/DataAssimilation/Surface/CANARI_EKF_SURFEX/index.html b/previews/PR1153/DataAssimilation/Surface/CANARI_EKF_SURFEX/index.html new file mode 100644 index 0000000000..4ca7cef93e --- /dev/null +++ b/previews/PR1153/DataAssimilation/Surface/CANARI_EKF_SURFEX/index.html @@ -0,0 +1,6 @@ + +CANARI EKF SURFEX · Harmonie wiki
GitHub

Surface variables assimilated / read in EKF_MAIN

From cycle 37 EKF is implemented in research/development mode. The following tiles and variables are modified:

NATURE

WG2/WG1/TG2/TG1

The uppermost two levels in ISBA of soil moisture and temperature are assimilated. With CANARI/CANARI_OI_MAIN by an OI method, by CANARI_SURFEX_EKF by an Extended Kalman Filter (EKF).

For 2012 it is planned to have a re-writing of OI_MAIN/EKF_MAIN to be the same binary in order to be able to apply the work done for OI_MAIN in EKF_MAIN and thus reduce the maintainance costs.

diff --git a/previews/PR1153/DataAssimilation/Surface/CANARI_OI_MAIN/index.html b/previews/PR1153/DataAssimilation/Surface/CANARI_OI_MAIN/index.html new file mode 100644 index 0000000000..1447fe0eb5 --- /dev/null +++ b/previews/PR1153/DataAssimilation/Surface/CANARI_OI_MAIN/index.html @@ -0,0 +1,6 @@ + +CANARI OI MAIN · Harmonie wiki
GitHub

Surface variables assimilated / read in OI_main

CANARI_OI_MAIN is the surface assimilation scheme which emulates what is done in CANARI for old_surface, but by using the external surface schme SURFEX.

The default surface model is SURFEX and the default surface assimilation scheme is CANARI_OI_MAIN.

NATURE

WG2/WG1/TG2/TG1

The uppermost two levels in ISBA of soil moisture and temperature are assimilated. With CANARI/CANARI_OI_MAIN by an OI method, by CANARI_SURFEX_EKF by an Extended Kalman Filter (EKF).

SNOW

The snow analysis is performed in CANARI and is controlled by the key: LAESNM. This is set default to be true in scr/RunCanari. And if running with SURFEX this will need to be true also in scr/OI_main as the SURFEX snow then needs to be updated by the analysis done in CANARI.

SEA

SST/SIC

The only option for SST/SIC at the moment is to take it from the boundaries.

  • ecf/config_exp.h :SST=BOUNDARY

If you are using boundaries from IFS the task Interpol_sst will interpolate sst from your boundary file and take into account that SST in the IFS files is not defined over land (as for HIRLAM) and also use an extra-polation routine to propagate the SST into narrow fjords.

There is a SST analysis built-in in CANARI but not used by HARMONIE or METEO-FRANCE.

WATER

LAKE temperature

Lake temperatures are updated in OI_main and are extrapolated from the land surface temperatures.

TOWN

ROAD temperature

Only used when TEB is activated (key: LAROME). Increment for TG2 is added to to ROAD layer 3.

diff --git a/previews/PR1153/DataAssimilation/Surface/SurfaceAnalysis/index.html b/previews/PR1153/DataAssimilation/Surface/SurfaceAnalysis/index.html new file mode 100644 index 0000000000..e6347262ad --- /dev/null +++ b/previews/PR1153/DataAssimilation/Surface/SurfaceAnalysis/index.html @@ -0,0 +1,19 @@ + +Surface Analysis · Harmonie wiki
GitHub

Surface Data Assimilation in HARMONIE

Surface model: SURFACE = surfex / old_surface

  • surfex: SURFEX is used as surface model (default and used in all Harmonie configurations) The surface fields are in a separat AROMOUT_.LLLL.lfi file in LFI format.
  • old_surface: surface physics modelled by routines integrated in code The surface fields are a part of the atmospheric file (ICMSHXXXX+LLLL) in FA format.

Surface analysis method: ANASURF = "CANARI_OI_MAIN" / "CANARI_EKF_SURFEX"

  • the horizontal interpolation of screen level parameters is performed by CANARI in both cases
  • CANARIOIMAIN updates soil temperature, water and ice based on 2m analysis increments using coefficients that are derived empirically for ISBA2/3-layers scheme
  • CANARIEKFSURFEX (experimental) updates soil parameters using the Extended Kalman Filter method.

ANASURF_MODE = "before" / "after"/ "both" - surface analysis performed before/after/both before and after 3DVAR

ANASURF_INLINE = "yes" /"no"

  • yes: call SODA for updating soil parameters inside CANARI (default and experimental)
  • no: soil parameters are updated after CANARI

Some details

The default surface model is SURFEX and the default surface assimilation scheme is CANARI_OI_MAIN. CANARI_EKF_SURFEX was first implemented in cy37 and will be undergoing tests in experimental and research mode before it can be used in operational setups.

CANARI is used for Optimum Interpolation horizontally to find analysis increments in each grid point based on observations minus first guess. The SURFEX assimilation schemes use two different techniques to propagate this information into the ground. The two ways CANARI is used is separated by two namelist settings needed when running with SURFEX:

  • LAEICS=.FALSE.

No initialization of ground variables are done as they are in the SURFEX file

  • LDIRCLSMOD=.TRUE.

2 metre variables taken directly from input file because they without surfex are diagnosed from 0 metre and lowest model height with the model specific routine achmt.

CANARI was designed before SURFEX was introduced and some of the climate variables that normally exist in the input file for CANARI, do not exist when using SURFEX. This means the task Addsurf is run before CANARI, adding the needed fields from the FA climate file (mMM).

The screen level analyisis (eg. T2m) used in blending/3DVAR/4DVAR is the same as for CANARI in the old_surface case.

Variables updated in CANARI for old_surface and SURFEX

src/arpifs/module/qactex.F90

HARMONIE namelist settings:

!  * LAET2M  : .T. 2 meter temperature analysis
+!  * LAEH2M  : .T. 2 meter humidity analysis
+!  * LAESNM  : .T. snow analysis
+!  * LAESST  : .F. SST analysis
+!  * LECSST  : .T. use ECMWF SST
+!  * LAEPDS  : .F. surface pressure analysis
+!  * LAEUVT  : .F. wind and temperature analysis
+!  * LAEHUM  : .F. humidity analysis
+!  * LAEV1M  : .F. 10 meter wind analysis

Blacklisting of surface observation

It is possible, in HARMONIE data assimilation, to blacklist data from specific sites. Following example illustrate blacklisting of one automatic (type 24) ship measurement with code name DBKR starting from a certain date March 6, 2012,

   cd ~/hm_home/$exp
+   Harmonie co LISTE_NOIRE_DIAP  # check out blacklist from the repository, e.g., source:Harmonie/nam/LISTE_NOIRE_DIAP
+   (edit then nam/LISTE_NOIRE_DIAP to insert, e.g. at the last line, following
+
+    1 SHIP        24  11 DBKR     03062012
+
diff --git a/previews/PR1153/EPS/BDSTRATEGY/index.html b/previews/PR1153/EPS/BDSTRATEGY/index.html new file mode 100644 index 0000000000..04c29f2774 --- /dev/null +++ b/previews/PR1153/EPS/BDSTRATEGY/index.html @@ -0,0 +1,6 @@ + +BDSTRATEGY · Harmonie wiki
GitHub

Boundary strategies for HarmonEPS: SLAF and EC ENS

Presently there are two available options for choosing boundaries when running HarmonEPS: EC ENS or SLAF In the branch harmonEPS-40h1.1 SLAF is set as default

Settings for SLAF (default in branch harmonEPS-40h1.1 )Settings for EC ENS
ecf/config_exp.hBDSTRATEGY=simulate_operationalBDSTRATEGY=eps_ec
BDINT=1 (can be set to larger value)BDINT=3 (or larger, hourly input is not possible)
suites/harmonie.pmComment out SLAF settings: #SLAFLAG, #SLAFDIFF, #SLAFK
'ENSBDMBR' => [ 0]'ENSBDMBR' => [ 0, 1..10] (or any other members from EC ENS you would like to use)

More information about how to treat the settings in harmonie.pm, see: here Note that BDSTRATEGY=eps_ec uses EC ENS data as stored in the GLAMEPS archive (as ECMWF does not store model levels in MARS). Only EC ENS at 00UTC and 12UTC are in this archive, and with 3h output, hence you need to use BDINT=3 for this option.

diff --git a/previews/PR1153/EPS/Howto/index.html b/previews/PR1153/EPS/Howto/index.html new file mode 100644 index 0000000000..7ecf5bb952 --- /dev/null +++ b/previews/PR1153/EPS/Howto/index.html @@ -0,0 +1,50 @@ + +Howto · Harmonie wiki
GitHub

How to run an ensemble experiment

Simple configuration

Running an ensemble experiment is not very different from running a deterministic one. The basic instructions about setup are the same and will not be repeated here.

What is different is that in ecf/config_exp.h one needs to pay attention to this particular section:

# *** Ensemble mode general settings. ***
+# *** For member specific settings use suites/harmonie.pm ***
+ENSMSEL=                                # Ensemble member selection, comma separated list, and/or range(s):
+                                        # m1,m2,m3-m4,m5-m6:step    mb-me == mb-me:1 == mb,mb+1,mb+2,...,me
+                                        # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.
+ENSINIPERT=                             # Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv, slaf.
+ENSCTL=                                 # Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.
+ENSBDMBR=                               # Which host member is used for my boundaries? Use harmonie.pm to set.
+ENSMFAIL=                               # Failure tolerance for all members. Not yet implemented.
+ENSMDAFAIL=                             # Failure tolerance for members doing own DA. Not yet implemented.

In addition one should also look at BDSTRATEGY, choose eps_ec if you want to use EC EPS at the boundaries (this option gets the EC EPS data from the GLAMEPS ECFS archive). If you want to use SLAF see here.

What really triggers EPS mode is having a non-empty ENSMSEL (ensemble member selection). The reason the specification looks a bit complicated is that our ensemble members do not necessarily have to be numbered consecutively from 0 or 1 and up, but can also be specified with steps. The rationale behind this is that we may want to e.g. downscale a subset of the 51 ECMWF EPS members, but not necessarily starting from their lowest number or taking them consecutively. ENSMSEL is a heritage from the Hirlam EPS system and has been retained in Harmonie.

In the simplest case of consecutive numbering, say we want a control run (member 0) and 20 perturbed members. We can then put

ENSMSEL=0-20

Now assume that we still have a control and 20 members, but that we want to take only every second pair of the host EPS members, i.e., take 0,1,2, skip 3,4, take 5,6, skip 7,8 and so on. The following specifications are then equivalent:

ENSMSEL=0,1,2,5,6,9,10,13,14,17,18,21,22,25,26,29,30,33,34,37,38
+ENSMSEL=0,1-37:4,2-38:4

In the second version we use the step option, so our list is 0, 1 to 37 in steps of 4 and 2 to 38 in steps of 4. The system will take care of transforming this into an ascending list for easier handling within the script system, but we don't have to worry about that.

The ENSMSEL selection is still not totally flexible. It would not be possible to have more than one of our members having boundaries from the same member of the host model. This might be relevant in the case of multiple physics, and multiple control members. For this reason the variable ENSBDMBR has also been added (in [10953]). The usage of this variable is explained in the next section (advanced configuration).

For the rest of the ENS... variables, not everything planned is implemented by the time of this writing. The only valid choice (except empty) for ENSINIPERT (initial state perturbation method) is "bnd". This option means to take the perturbations of the first (interpolated) boundary file, and add these perturbations to a reference (control) analysis. This will involve the script scr/PertAna, a section of its header is quoted below:

#| Different perturbation methods are distinguished by
+#| ENSINIPERT. This script implements ENSINIPERT=bnd
+#|
+#| bnd: boundary data mode
+#|      an($ENSMBR) = an(cntrl) + bnd1($ENSMBR) - bnd1(cntrl)
+#|           where bnd1 denotes the first boundary file

Which member is the control member is specified by the variable ENSCTL.

But how to specify that one (or more) member(s) run assimilation and others do not, or in other words, how to specify member specific values to the variables in config_exp.h? This is the topic of the next section.

Advanced configuration, member specific settings

It would perhaps have been possible to also have member specific configuration in config_exp.h, but since perl is more flexible with lists than the shell, and since perl is already used extensively in the Harmonie system, it was decided to extend the handling of the template definition files in ecFlow in such a way that every tdf can now also have an associated perl module to help in its interpretation. And, since after the changesets [10930] and [10932] there is no separate tdf for HarmonEPS anymore (harmonie.tdf is used also for EPS runs), the file that is used for member specific settings is thus suites/harmonie.pm.

The idea of harmonie.pm is to be able to override some of the environment variables of config_exp.h with new values for selected members of the ensemble. This is achieved by populating the perl hash %env with key => value pairs. The keys are names of environment variables, like ANAATMO, ANASURF, PHYSICS etc. Only names that are present and exported in config_exp.h should be used as keys. Values can take four different forms:

  • A hash, i.e., a new set of key => value pairs. The syntax in this case is { m1 => val1, m2 => val2, ... }. The numbers m1, m2, etc. must be member numbers given in ENSMSEL. Order is irrelevant, and only members with values different from the default need be listed of course.
  • An array, where indices implicitly run from 0 and up. The syntax in this case is [ val0, val1, val2, ...]. Here the array should have as many values as members given in ENSMSEL, but if not, missing values will be recycled from the start of the array (as many times as necessary). Thus, using arrays will give values to all members, and order is important.
  • A scalar (string). This string is subject to variable substitution, i.e., any occurrence of the substring @EEE@ will be replaced by the relevant 3-digit ensemble member number.
  • A subroutine (reference), syntax is typically sub { my $mbr = shift; return "something dependent on $mbr"; }. The arguments given to the subroutine are the "args" of the invoking &Env('SOMEVAR',args) call (see below).

In addition to the hash %env, harmonie.pm also contains a subroutine Env. In suites/harmonie.tdf many earlier occurences of $ENV{SOMEVAR} have now been replaced by subroutine calls &Env('SOMEVAR','@EEE@'). The @EEE@ argument will be replaced by the relevant member number before invocation, and Env will check the hash %env for a member specific setting to possibly return instead of the default value $ENV{SOMEVAR}. There should normally be no need to make changes to the subroutine Env, putting entries into the hash %env ought to be enough.

Note also that not every occurrence of $ENV{...} has been replaced by a corresponding &Env(...) in harmonie.tdf, only those variables that are most likely to have variations among members are changed. If you need variations in e.g. $HOST_MODEL, then harmonie.tdf needs to be updated so that those variations are respected within the ensemble (EEE) loops.

An example

We will now look at one particular example, in order to (hopefully) make the descriptions above a bit more clear. Our intent is to have an ensemble with a mix of members with AROME and ALARO physics, with one control member and 10 perturbed members for each. The control members will both do their own 3DVAR assimilation, while perturbed members will have ANAATMO=blending. But with ENSINIPERT=bnd, the control analysis will be used also by the perturbed members. All members will do surface assimilation, but the forecast interval differs. The control members have a forecast interval of 6 hours (because of the 3D-Var), while the perturbed members have FCINT=12. To achieve this, we have the following settings in config_exp.h:

ANAATMO=blending
+ANASURF=CANARI_OI_MAIN
+FCINT=12
+BDSTRATEGY=eps_ec
+ENSMSEL=0-21
+ENSINIPERT=bnd
+ENSCTL=
+ENSBDMBR=

In harmonie.pm our %env looks as follows:

%env = (
+   'ANAATMO' => { 0 => '3DVAR', 1 => '3DVAR' },
+   'FCINT'   => { 0 => 6,       1 => 6 },
+   'PHYSICS' => [ 'arome','alaro','alaro','arome'],
+   'ENSCTL'  => [ '000',  '001',  '001',  '000'],
+   'ENSBDMBR' => [ 0, 0, 1..20],
+
+### Normally NO NEED to change the variables below
+   'ARCHIVE' => '${ARCHIVE}mbr@EEE@/',
+   'CLIMDIR' => '$CLIMDIR/mbr@EEE@',
+   'OBDIR' => '$OBDIR/mbr@EEE@',
+   'VFLDEXP' => '${EXP}mbr@EEE@',
+   'BDDIR' => sub { my $mbr = shift;
+                    if ($ENV{COMPCENTRE} eq 'ECMWF') {
+                       return '$BDDIR/mbr'.sprintf('%03d',$mbr);
+                    } else {
+                       return '$BDDIR/mbr'.sprintf('%03d',&Env('ENSBDMBR',$mbr));
+                    }
+                  },
+   'FirstHour' => sub { my $mbr = shift;
+                        return $ENV{StartHour} % &Env('FCINT',$mbr);
+                      }
+    );

ANAATMO is straightforward, only the control members need an exception from blending, so using a hash is most appropriate. Similarly for FCINT. For PHYSICS we have used an array and the fact that the array will be recycled. Thus member 0 will be the AROME control, while member 1 will be the ALARO control. The reason why we did not simply put a 2-element array [ 'arome','alaro'] to be repeated is that since the ECMWF perturbations come in +/- pairs, we don't want all the '+' perturbations to be always with the same physics (and the '-' perturbations with the other type). Therefore, we added a second pair with the order reversed, to alternate +/- perturbations between AROME and ALARO members. ENSCTL follows the same pattern as PHYSICS. Note the need for 3-digit numbers in ENSCTL, at present this is necessary to avoid parsing errors in the preparation step of ecFlow.

Note also how we have used ENSBDMBR. For both the AROME control (member 0) and ALARO control (member 1), we have used the EC EPS control member 0 to provide boundaries. The syntax 1..20 is a perl shorthand for the list 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20.

Note added after changeset [12537]: The setting of ENSBDMBR created a race condition in the boundary extraction for runs at ECMWF. This is hopefully solved by the new definition for BDDIR, which makes use of the possibility of having a subroutine to compute the member specific settings. Another example where a subroutine came out handy was for the setting of FirstHour.

Further reading

More specific instructions and information about known problems can be found here.

diff --git a/previews/PR1153/EPS/SLAF/Get_pertdia.pl.pm/index.html b/previews/PR1153/EPS/SLAF/Get_pertdia.pl.pm/index.html new file mode 100644 index 0000000000..38d9ab5e9f --- /dev/null +++ b/previews/PR1153/EPS/SLAF/Get_pertdia.pl.pm/index.html @@ -0,0 +1,6 @@ + +Get_pertdia · Harmonie wiki
GitHub
diff --git a/previews/PR1153/EPS/SLAF/index.html b/previews/PR1153/EPS/SLAF/index.html new file mode 100644 index 0000000000..66aea4b182 --- /dev/null +++ b/previews/PR1153/EPS/SLAF/index.html @@ -0,0 +1,26 @@ + +SLAF · Harmonie wiki
GitHub

SLAF in HarmonEPS

Background

SLAF stands for Scaled Lagged Average Forecasting (Ebisuzaki & Kalnay, 1991) and it is a technique used to easily generate perturbed boundary and initial conditions from a single deterministic model (HRES).

The general idea of SLAF is that perturbations are taking HRES forecasts valid at the same time but with different forecast lengths and initial times :

\[IC_m = A_c + K_m * ( IFS_0 – IFS_N )\]

\[BC_m = IFS_0 + K_m * ( IFS_0 – IFS_N )\]

Where $IC_m$ is the initial condition for member $m$, $BC_m$ is the lateral boundary condition for member $m$, $A_c$ is the control analysis, $K_m$ a scaling factor, $IFS_0$ is the latest available IFS forecast and $N$ is the forecast length for an earlier forecast valid at the same time.

This first attempt on using SLAF revealed an undesirable clustering between the different members using positive or negative perturbations. Depending on the sign of $K_m$ the members gather on either side of the mean. If HRES has a increasing bias over the forecast length the same bias will be introduced through the perturbations. A cure of this problem is to use shorter forecast lengths and construct the perturbations by two consecutive forecasts 6 hours apart:

\[IC_m = A_c + K_m * ( IFS_N – IFS_N-6 )\]

\[BC_m = IFS_0 + K_m * ( IFS_N – IFS_N-6 )\]

where $IFS_N$ is a forecast with length $N$ and $IFS_N-6$ is a 6h shorter forecast, both valid at the same time as the analysis. With this construction most of the clustering is gone. THIS IS THE DEFAULT SETUP IN HarmonEPS cy40.

From the equation it is clear that every lag used generates two perturbations, so if we use deterministic runs from 06, 12, 18, 24 and 30 hours before we'll have 10 different perturbed members and control, then 11 members in total.

The goal is to have similar spread at the boundaries of the LAMEPS than using pure downscaling but with less communication time.

Sotfware to use SLAF technique in HarmonEPS was introduced in HarmonEPS branch in version 38h1.1 and first tested by Jose A. Garcia-Moya.

The main advantage of SLAF is that only needs having stored the last runs of the deterministic model and, in daily run mode at home, we only need to have access to the last ECMWF (or any other global model) run avoiding a lot of time in communications compared with the pure downscaling technique.

Summarizing, to run an HarmonEPS experiment using SLAF (default in cy40) you have to:

  1. Refer to HarmonEPS branch 38h1.1 (minimum). (Constant 6h lag as described above from cy40)

  2. In ecf/config_exp.h choose:

    • BDSTRATEGY=simulate_operational
    • ENSMSEL=0-10 (or whatever you want)
    • SLAFLAG=1
    • SLAFK=1

  3. In suites/harmonie.pm:

    • 'ENSBDMBR' => [ 0],
    • 'SLAFLAG' => [ 0, 6, 6, 12, 12, 18, 18, 24, 24, 30, 30],
    • 'SLAFDIFF' => [ 0, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6],
    • 'SLAFK' => ['0.0','1.75','-1.75','1.5','-1.5','1.2','-1.2','1.0','-1.0','0.9','-0.9'] (example used for constant 6h lag)

Where SLAFLAG represent the lags of every member of the ensemble and SLAF are the different scales (including the sign). Theoretically the user may set SLAFK as she/he likes but it seems to be more convenient choosing ± in order to keep symmetry of the perturbations around control. Note that to get equally sized perturbations SLAFK is required to be tuned, please see below for details.

Note that no further control on the equilibrium among the perturbed variables (temperature, humidity and so on) is done, so perhaps you have to check the spin-up if you are interested in the first hour of the ensemble.

Tuning of SLAF

The correct size of SLAFK can be determined by the perturbation diagnostics done in PertAna (harmonie-40h1.1) or Pertdia (harmonie-40h1.2). Here xtool is used to calculate the differences between the boundary files for the control and the individual member. The output is then collected in the HM_Date*.html files or HM_Postprocessing*.html for harmonie-40h1.1 or harmonie-40h1.2 respectively. 

Check perturbations for member 004 against 000
+SLAFLAG=18 SLAFK=1.4 SLAFDIFF=6
+...
+Start check boundary 048
+...
+            NAME |  PAR    LEV TYP                                    DESC          BIAS          RMSE           MIN           MAX
+S001TEMPERATURE  |  011   001 109                             Temperature   89.367E-003  286.398E-003 -807.670E-003  861.502E-003
+...
+SURFPRESSION     |  001   000 105                        Surface pressure   50.062E+000  166.547E+000 -694.022E+000  762.069E+000

A parser Get_pertdia.pl , working for harmonie-40h1.2, is attached and should be used like in this example from MetCoOp


+./Get_pertdia.pl SURFPRESSION HM_Postprocessing_201704??00.html HM_Postprocessing_201704??12.html
+Scanning HM_Postprocessing_2017040100.html 
+...
+Scanning HM_Postprocessing_2017040512.html 
+PARAMETER:SURFPRESSION
+MBR  HH  SLAFLAG  SLAFDIFF SLAFK     BIAS      RMSE      STDV     CASES
+003  00  18       06       -1.40      0.21     59.86     59.86   11 
+003  06  18       06       -1.40     -5.67     67.37     67.13   11 
+...
+009  42  36       06        0.95     28.92    130.72    127.48   11 
+009  48  36       06        0.95     14.80    176.10    175.48   11 
+

The SLAKF can then be adjusted to achieve a uniform level of STDV for all member. Note that the response may be different for different seasons and will vary between IFS versions. An example of SLAF diagnostics from MetCoOp can be seen in the figure below

Examples

Below is an example for 2016052006 for the two different approaches of SLAF described above:

diff --git a/previews/PR1153/EPS/SPP/index.html b/previews/PR1153/EPS/SPP/index.html new file mode 100644 index 0000000000..5f34378544 --- /dev/null +++ b/previews/PR1153/EPS/SPP/index.html @@ -0,0 +1,68 @@ + +SPP · Harmonie wiki
GitHub

SPP in HarmonEPS

SPP options in HARMONIE

The Stochastically Perturbed Parameterizations scheme (SPP) introduces stochastic perturbations to values of chosen closure parameters representing efficiencies or rates of change in parameterized atmospheric (sub)processes. See here for more information. SPP is available since cy40h1.1.1.

SPP is activated by setting SPP=yes in ecf/config_exp.h

SPP uses the Stochastic Pattern Generator (SPG). The pattern characteristics are set by the following settings in config_exp.h:

 SDEV_SPP = 1.0           # Standard deviation of the pattern
+ TAU_SPP = 43200          # Time scale (seconds)
+ XLCOR_SPP = 200000       # Length scale (m)
+ SPGQ_SPP = 0.5           # Controls small vs. large scales 
+ SPGADTMIN_SPP=0.15       # initialization to ensure stationary statistics from the start of the integration
+ SPGADTMAX_SPP=3.0        # initialization to ensure stationary statistics from the start of the integration
+ NPATFR_SPP=-1            # Frequency to evolve pattern: >0 in timesteps, <0 in hours

The parameters that can be perturbed are:

PerturbationDescriptionPerturbs
P1: LPERT_PSIGQSATPerturb saturation limit sensitivityVSIGQSAT
P3: LPERT_CLDDPTHDPPerturb threshold cloud thickness used in shallow/deep convection decisionRFRMIN(20)
P4: LPERT_ICE_CLD_WGTPerturb cloud ice content impact on cloud thicknessRFRMIN(21)
P5: LPERT_ICENUPerturb ice nucleiRFRMIN(9)
P6: LPERT_KGN_ACONPerturb Kogan autoconversion speedRFRMIN(10)
P7: LPERT_KGN_SBGRPerturb Kogan subgrid scale (cloud fraction) sensitivityRFRMIN(11)
P8: LPERT_RADGRPerturb graupel impact on radiationRADGR
P9: LPERT_RADSNPerturb snow impact on radiationRADSN
P10:LPERT_RFAC_TWOCPerturb top entrainmentRFAC_TWO_COEF
P11:LPERT_RZC_HPerturb stable conditions length scaleRZC_H
P12:LPERT_RZL_INFAsymptotic free atmospheric length scaleRZL_INF
P13:LPERT_RSWINHFShort wave inhomogeneity factorRSWINHF
P14:LPERT_RLWINHFLong wave inhomogeneity factorRLWINHF
P15:LPERT_ALPHACloud droplet gamma distribution parameters alpha (over sea)ALPHA
P16:LPERT_RZNUCCloud droplet gamma distribution parameters nu (over land)RZNUC
P17:LPERT_RZMFDRYParameter for dry mass fluxRZMFDRY
P18:LPERT_RZMBCLOSUREClosure parameter for moist mass fluxRZMBCLOSURE
P19:LPERT_SLWINDPerturbing V(M) in the semi-lagrangian advection schemeSLWIND

Main settings

The following describes the namelist flags for SPP. Namelist flags for SPP are found in the namelist NAMSPP in nam/harmonie_namelists.pm

Activate perturbation of a parameter by setting LPERT_[PARAMETER] to TRUE in harmonie_namelists.pm, e.g.:

 NAMSPP=>{
+ 'LPERT_PSIGQSAT' => '.TRUE.,',
+ ...
+ },

The size of the perturbation (the standard deviation of the parameter distribution) is set by CMPERT_[PARAMETER], e.g.:

 NAMSPP=>{
+ 'CMPERT_PSIGQSAT' => '0.3,',
+ ...
+ },

The min/max range of each perturbed parameter can be controlled by the CLIP_[PARAMETER] namelist variable where the limits are specified as e.g.:

NAMSPP=>{
+'CLIP_PSIGQSAT' => '0.0,0.1',
+...
+ },

Two distributions for the parameter values are possible: lognormal and pseudo uniform. Note: when a pseudo uniform distribution is used, the distribution may extend to negative values, which should be avoided. This can be assured by setting a clipping range (see above). Set LUNIFORM_[PARAMETER] to FALSE to use lognormal and to TRUE to use pseudo uniform, e.g.:

NAMSPP =>{
+'LUNIFORM_PSIGQSAT' => '.FALSE.,',
+...
+ },

When pseudo uniform is chosen, it is possible to shift the distribution by setting UNIFORM_OFFSET_[PARAMETER], where offset 0.5 is default, <0.5 moves the distribution to the right and >0.5 moves the distribution to the left e.g.:

NAMSPP =>{
+'UNIFORM_OFFSET_PSIGQSAT' => '0.45,',
+...
+ },

When lognormal distribution is chosen, the flag LLNN_MEAN1_[PARAMETER] decides if the mean or the median of the distribution corresponds to the unperturbed, deterministic value of the parameter. Set to FALSE to use the median and to TRUE to use the mean, e.g.:

NAMSPP =>{
+'LLNN_MEAN1_PSIGQSAT' => '.TRUE.,',
+...
+ },

Correlation of patterns

Any arbitrary number of parameters can be correlated by setting MP_X, where X is the name of the parameter, to the same number in in NAMSPP. Anticorrelation can be achieved by setting IC_X=-1. I.e. if we set

NAMSPP =>{
+...
+   'MP_RZC_H' => '77,',
+   'MP_RZL_INF' => '77,',
+   'MP_KGN_ACON' => '99',
+   'MP_KGN_SBGR' => '99,',
+   'IC_KGN_SBGR' => '-1,',
+...
+ },

we will correlate RZC_H and RZL_INF and anticorrelate KGN_ACON with KGN_SBGR. The latter is achieved by setting IC_KGN_SBGR=-1. Note that the number for MP_X is used as an ID and should not be considered as a sequence number. It does not control the order of the patterns in the output or similar.

Define the time and length scales for an individual pattern

The pattern timescale TAU and lengthscale XLCOR are defined in NAMSPP and are then valid for all patterns. To specify the patterns individually we can set something like:

NAMSPP =>{
+...
+  'YSPP_CONFIG_PAR(1)%TAG' => '\'PSIGQSAT\'',
+  'YSPP_CONFIG_PAR(1)%TAU' => '21600',
+  'YSPP_CONFIG_PAR(1)%XLCOR' => '150000',
+  'YSPP_CONFIG_PAR(2)%TAG' => '\'KGN_ACON\'',
+  'YSPP_CONFIG_PAR(2)%TAU' => '10800',
+  'YSPP_CONFIG_PAR(2)%XLCOR' => '350000',
+...
+ },

where TAG is the name of the parameter to be perturbed.

CMPERT needs to be tuned for each parameter. CMPERT1 in the table below is the value that gives the range of values for the parameters recommended by the physics experts (when a lognormal distribution is used, if not stated otherwise). CMPERT is the value recommended for use. Tuning is ongoing, hence not all recommendations are in place yet. The well tested settings are in bold, preliminary suggestions are in italic.

PerturbationDet. valueRecom. rangeCMPERT (CMPERT1)DistributionOffsetMean MedianClippingCorr.
PSIGQSAT0.020-0.060.6 (0.3)Log-normalN.A.MeanNoN.A.
CLDDPTHDP40000-100000.6 (0.3)Log-normalN.A.MeanNoN.A.
ICE_CLD_WGT10.2-21.2 (0.3)Uniform0.5N.A.0.01 - 10N.A.
ICENU10.01-100TBD (1.05)TBDTBDTBDTBDN.A.
KGN_ACON101-100TBD (0.75)TBDTBDTBDTBDN.A.
KGN_SBGR1[1]0.01-1TBD (0.3)TBDTBDTBD0., 1.N.A.
RADGR0.50-1TBD (0.4)TBDTBDTBD0., 2.N.A.
RADSN10-2TBD (0.35)TBDTBDTBD0., 2.N.A.
RFAC_TWOC20.5-3TBD (0.3)TBDTBDTBDTBDN.A.
RZC_H0.110.1-0.21.05 (0.3)Uniform0.475N.A.0.001, 100Yes
RZL_INF4020-2000.45 (0.45)Log-normalN.A.MeanNoYes
LPERT_RSWINHF1?0.95-1Not tested
LPERT_RLWINHF1?0.95-1Not tested
LPERT_ALPHA30.2-51.4 (0.3)Uniform0.5N.A.TBDN.A.
LPERT_RZNUC30.2-100.6 (0.3)Log-normalN.A.MeanNoN.A.
LPERT_RZMFDRY10.2-20.8 (0.3)Log-normalN.A.MeanNoN.A.
LPERT_RZMBCLOSURE0.350.05-0.70.8 (0.3)Log-normalN.A.MeanNoN.A.

For more SPP details see src/arpifs/module/spp_mod.F90

Tendency and pattern diagnostics

Diagnostic output of tendencies and SPP patterns can be activated by setting TEND_DIAG=yes in ecf/config_exp.h. Activation gives six new 3D-fields

FANAMEDescription
SNNNPTENDUU-component tendencies
SNNNPTENDVV-component tendencies
SNNNPTENDTTemperature tendencies
SNNNPTENDRMoisture tendencies
SNNNMULNOISESPPT pattern, same for all levels
SNNNSPP_PATTERNSPP pattern, distribution as explained below

The raw and scaled patterns are stored in the vertical column of SNNNSPP_PATTERN using the index given for Diagnostic number in the SPP initialization. Thus, with the standard settings and the correlated pattern exampel above we get in the standard log file NODE.001_01 available in the Forecast task output :

...
+PSIGQSAT pattern/diagnostic numbers are:  1  1
+CLDDPTHDP pattern/diagnostic numbers are:  2  2
+ICE_CLD_WGT pattern/diagnostic numbers are:  3  3
+ICENU pattern/diagnostic numbers are:  4  4
+KGN_ACON pattern/diagnostic numbers are:  5  5
+KGN_SBGR pattern/diagnostic numbers are:  5  6
+RADGR pattern/diagnostic numbers are:  6  7
+RADSN pattern/diagnostic numbers are:  7  8
+RFAC pattern/diagnostic numbers are:  8  9
+RZC_H pattern/diagnostic numbers are:  9 10
+RZCL_INF pattern/diagnostic numbers are:  9 11
+...

The raw pattern is stored as 2N-1 and the scaled one as 2N where N is the Diagnostic number given in the log file. This gives us the following table:

Perturbationraw patternscaled pattern
PSIGQSATS001SPP_PATTERNS002SPP_PATTERN
CLDDPTHDPS003SPP_PATTERNS004SPP_PATTERN
ICE_CLD_WGTS005SPP_PATTERNS006SPP_PATTERN
ICENUS007SPP_PATTERNS008SPP_PATTERN
KGN_ACONS009SPP_PATTERNS010SPP_PATTERN
KGN_SBGRS011SPP_PATTERNS012SPP_PATTERN
RADGRS013SPP_PATTERNS014SPP_PATTERN
RADSNS015SPP_PATTERNS016SPP_PATTERN
RFACS017SPP_PATTERNS018SPP_PATTERN
RZC_HS019SPP_PATTERNS020SPP_PATTERN
RZL_INFS021SPP_PATTERNS022SPP_PATTERN

where the numbering may depend on the number of actively perturbed parameters.

Cy40h111 settings (NB only log-normal distribution possible)

In config_exp.h:

SDEV_SPP = 3.0      # Standard deviation of the pattern
PerturbationDet. valueRecommended rangeCMPERT (CMPERT1)Clipping rangeMean or median
LPERT_PSIGQSAT0.02, but set to 0.030-0.060.4 (0.1)NoMean
LPERT_CLDDPTHDP40001000-80000.4 (0.1)NoMean
LPERT_ICE_CLD_WGT10-20.4 (0.1)NoMean
LPERT_ICENU10.1-100.7 (0.35)NoMedian
LPERT_KGN_ACON102-500.5 (0.25)NoMean
LPERT_KGN_SBGR1, but set to 0.50.01-10.2 (0.1)0.0 - 1.0Mean
LPERT_RADGR0, but set to 0.50-10.3 (0.15)0.0 - 2.0Mean
LPERT_RADSN0, but set to 0.50-10.3 (0.15)0.0 - 2.0Mean
LPERT_RFAC_TWOC20.5-30.4 (0.1)NoMean
LPERT_RZC_H0.150.1-0.250.4 (0.1)NoMean
LPERT_RZL_INF10030-3000.6 (0.15)NoMean

In cy 40 the output of patterns and tendencies was as follows:

The raw and scaled patterns are stored in the vertical column of SNNNEZDIAG01 using the index given in the SPP initialization. Thus

...
+KGET_SEED_SPP: PSIGQSAT                10000   1841082593
+   pattern   1 for PSIGQSAT         using seed   1841082593
+KGET_SEED_SPP: CLDDPTH                 10002    570790063
+   pattern   2 for CLDDPTH          using seed    570790063
+KGET_SEED_SPP: CLDDPTHDP               10004    980493159
+   pattern   3 for CLDDPTHDP        using seed    980493159
+KGET_SEED_SPP: ICE_CLD_WGT             10008   1362729695
+   pattern   4 for ICE_CLD_WGT      using seed   1362729695
+...

would give us

Perturbationraw patternscaled pattern
PSIGQSATS001EZDIAG01S002EZDIAG01
CLDDPTHS003EZDIAG01S004EZDIAG01
CLDDPTHDPS005EZDIAG01S006EZDIAG01
ICE_CLD_WGTS007EZDIAG01S008EZDIAG01

and so on

SPPT pattern EZDIAG02 (same in all levels)

SPP tendencies PtendU EZDIAG03

SPP tendencies PtendV EZDIAG04

SPP tendencies PtendT EZDIAG05

SPP tendencies PtendQ EZDIAG06

Suggestions for parameters to include in SPP:

ParameterDescriptionDeterministic value cy43Suggested range of valuessuggestion for parameter to correlate withPerson responsible for implementing
Terminal fall velocities of rain, snow and graupelSibbo
RFRMIN(39)Depo_rate_graupelRFRMIN 39 and 40 should approximately respect log10C = -3.55 x + 3.89, see eq. 6.2 on p. 108 in the meso-NH documentation: [https://hirlam.org/trac/attachment/wiki/HarmonieSystemDocumentation/EPS/SPP/sciICE3doc_p3.pdf Doc]Pirkka
RFRMIN(40)Depo_rate_snow)RFRMIN 39 and 40 should approximately respect log10C = -3.55 x + 3.89, see eq. 6.2 on p. 108 in the meso-NH documentation: [https://hirlam.org/trac/attachment/wiki/HarmonieSystemDocumentation/EPS/SPP/sciICE3doc_p3.pdf Doc]Pirkka
RFRMIN(16)Distr_snow_cto be correlated with RFRMIN(17)
RFRMIN(17)Distr_snow_xto be correlated with RFRMIN(16)

Experiments

List with cy43h22 experiments is here: [wiki:HarmonieSystemDocumentation/EPS/ExplistSPPcy43 List of experiments]

A guide for running the tuning experiments is here: [wiki:HarmonieSystemDocumentation/EPS/HowtoSPPcy43 Guide]

  • 1Default/deterministic value of 1 and recommended range of 0.01-1 means the deterministic value is at the high end of the distribution.
diff --git a/previews/PR1153/EPS/SPPImplementation/index.html b/previews/PR1153/EPS/SPPImplementation/index.html new file mode 100644 index 0000000000..257081cec6 --- /dev/null +++ b/previews/PR1153/EPS/SPPImplementation/index.html @@ -0,0 +1,6 @@ + +SPP implementation · Harmonie wiki
GitHub

The SPP implementation in IAL and HARMONIE

The Stochastically Perturbed Parameterizations scheme (SPP) introduces stochastic perturbations to values of chosen closure parameters representing efficiencies or rates of change in parameterized atmospheric (sub)processes. See here for more information. See the main SPP documentation for selection of settings.

Controling routines

The SPP data structure and logics is controlled by the following routines

RoutineDescription
src/arpifs/module/spp_mod.F90Defines SPP scheme types TSPP_CONFIG_PAR and TSPP_CONFIG for the parameter config and the overall config respectively
src/arpifs/module/spp_mod_type.F90Harmonie specific data types TSPP_CONFIG_TYPE, ATM_SPP_VARS, SFX_VARS, control and the methods CLEAR_SSP_TYPE, SET_SPP_TYPE, APPLY_SPP, APPLY_SPP_SURFEX, DIA_SPP, SET_ALL_ATM_SPP, SET_ALL_SFX_SPP, CLEAR_ALL_ATM_SPP, CLEAR_ALL_SFX_SPP
src/surfex/SURFEX/modd_sfx_spp.F90SURFEX specific data types, control and methods CLEAR_SFX_SPP, SET_SFX_SPP, APPLY_SFX_SPP, CLEAR_ALL_SFX_SPP, SPP_MASK, SPP_DEMASK, PREP_SPP_SFX. Partly duplicates spp_mod_type.F90
src/arpifs/namelist/namspp.nam.hThe SPP namelist
src/arpifs/setup/get_spp_conf.F90Setup defaults and read the SPP namelist. Initialises the SPG parameters
src/arpifs/phys_dmn/ini_spp.F90Initialises the pattern used for SPP
src/arpifs/phys_dmn/evolve_spp.F90Control routine for pattern propagation
src/mse/internals/aroset_spp.F90Initialises the SURFEX part of SPP

Note that the control routines shared with IFS will be totally rewritten, and much neater, with the introduction of CY49T1. See e.g. spp_def_mod.F90, spp_gen_mod.F90

SPG routines

The pattern used for SPP within HARMONIE is SPG and the code for this is found under src/utilities/spg. For the propagation of the pattern we find the routine EVOLVE_ARP_SPG in src/arp/module/spectral_arp_mod.F90

Applying the patterns

In apl_arome.F90 the HARMONIE specific data types are initialised with SET_ALL_ATM_SPP and SET_ALL_SFX_SPP. These routine groups the different parameters and connects them to a pattern and a the correct diagnostic field EZDIAG if requested.

Applying the patterns in the upper air part

In the routine were a specific parameter is used the pattern is applied by calling APPLY_SPP. This is done for each parameter accoding to the table below.

PerturbationRoutine
RADGRsrc/arpifs/phys_dmn/apl_arome.F90
RADSNsrc/arpifs/phys_dmn/apl_arome.F90
RFAC_TWOCsrc/arpifs/phys_dmn/vdfexcuhl.F90
RZC_Hsrc/arpifs/phys_dmn/vdfexcuhl.F90
RZL_INFsrc/arpifs/phys_dmn/vdfexcuhl.F90
RZMFDRYsrc/arpifs/phys_dmn/vdfhghtnhl.F90
RZMBCLOSUREsrc/arpifs/phys_dmn/vdfhghtnhl.F90
CLDDPTHDPsrc/arpifs/phys_dmn/vdfhghtnhl.F90
RLWINHFsrc/arpifs/phys_radi/recmwf.F90
RSWINHFsrc/arpifs/phys_radi/recmwf.F90
PSIGQSATsrc/mpa/micro/internals/condensation.F90
ICE_CLD_WGTsrc/mpa/micro/internals/condensation.F90
ICENUsrc/mpa/micro/internals/rain_ice_old.F90
KGN_ACONsrc/mpa/micro/internals/rain_ice_old.F90
KGN_SBGRsrc/mpa/micro/internals/rain_ice_old.F90
ALPHAsrc/mpa/micro/internals/rain_ice_old.F90
RZNUCsrc/mpa/micro/internals/rain_ice_old.F90

Applying the patterns in SURFEX

As SURFEX should have no dependencies to external modules the data is copied into the internalt SURFEX SPP data structure in AROSET_SPP called from ARO_GROUND_PARAM.

For SURFEX the parameter table looks like

PerturbationRoutine
CVsrc/surfex/SURFEX/coupling_isban.F90
LAIsrc/surfex/SURFEX/coupling_isban.F90
RSMINsrc/surfex/SURFEX/coupling_isban.F90
CD_COEFF-
CH_COEFF-

In SURFEX we also have to pack/unpack the data arrays to only use the active points for a specific tile or patch. This is done in the SPP_MASK and SPP_DEMASK routines found in src/surfex/SURFEX/modd_sfx_spp.F90 and called from src/surfex/SURFEX/coupling_surf_atmn.F90. At the time of writing returning the diagnostics of the pattern doesn't work satisfactory.

The additional code changes done for SPP in SURFEX can be viewed here

diff --git a/previews/PR1153/EPS/SPPT/index.html b/previews/PR1153/EPS/SPPT/index.html new file mode 100644 index 0000000000..a50dc09f19 --- /dev/null +++ b/previews/PR1153/EPS/SPPT/index.html @@ -0,0 +1,6 @@ + +SPPT · Harmonie wiki
GitHub

SPPT

** Since CY46h1 SPPT is no longer supported in HarmonEPS **

The SPPT configuration within HarmonEPS is being tested over the period 2016053000 to 2016060500 using the !MetCoOp domain. It has been found that there are some problems with the default pattern generator and thus it has been decided to use the Stochastic Pattern Generator (SPG).

Below is a table of experiments which will be completed in order to find a suitable configuration of the SPG control parameters TAU (time correlation scale) and XLCOR (length correlation scale). The value of the standard deviation of the perturbation amplitudes (SDEV_SDT) is kept fixed at 0.20 as is the clipping ratio of the perturbations (XCLIP_RATIO_SDT=5.0). These values along with the default value for XLCOR come from suggested settings used by Mihaly Szucs.

First of all, keeping the XLCOR parameter constant (set at the default value of 2000000), TAU will be varied between 1h and 24h as shown in the table. The value of TAU is in seconds in the table below. The value of XLCOR is in metres.

The experiments are started by typing ~hlam/Harmonie start DTG=2016053000 DTGEND=2016060500 BUILD=yes

= Experiment Name == Who == DTG == DTGEND == Version == Domain == TAU == XLCOR == Description and Comments == Status == Verification =
SPPT_only_40h111_2000km_1hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B36002000000XLCOR constant, TAU varyingSuspendedNo
SPPT_only_40h111_2000km_3hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B108002000000XLCOR constant, TAU varyingCrashNo
SPPT_only_40h111_2000km_6hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B216002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_9hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B324002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_12hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B432002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_15hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B540002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_18hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B648002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_21hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B756002000000XLCOR constant, TAU varyingCompleteYes
SPPT_only_40h111_2000km_24hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B864002000000XLCOR constant, TAU varyingCompleteYes

Once these experiments have been completed testing will commence on keeping the time correlation scale constant and the spatial scale will be varied. Below is a table of experiments to this effect.

A default value of 8h will be used for TAU as per the suggested value from Mihaly Szucs.

= Experiment Name == Who == DTG == DTGEND == Version == Domain == TAU == XLCOR == Description and Comments == Status == Verification =
SPPTonly40h111100km8hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B28800100000XLCOR varying, TAU constantCompleteYes
SPPTonly40h111200km8hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B28800200000XLCOR varying, TAU constantCompleteYes
SPPTonly40h111400km8hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B28800400000XLCOR varying, TAU constantCompleteYes
SPPTonly40h111600km8hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B28800600000XLCOR varying, TAU constantCompleteYes
SPPTonly40h111800km8hJanne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B28800800000XLCOR varying, TAU constantCompleteYes
SPPTonly40h1111000km8hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B288001000000XLCOR varying, TAU constantCompleteYes
SPPTonly40h1111200km8hAlan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B288001200000XLCOR varying, TAU constantCompleteYes
SPPTonly40h1111500km8hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B288001500000XLCOR varying, TAU constantCompleteYes
SPPTonly40h1111800km8hKaroliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B288001800000XLCOR varying, TAU constantCompleteYes

The next step in the SPPT sensitivity analysis will be a set of experiments designed to test the impact of the SDEV parameter. Default values of 8h and 2000000 for TAU and XLCOR are used respectively.

The XCLIPRATIOSDT parameter will also be adjusted as a function of the SDEVSDT value. Initially keeping the clipping at 1.0 (clipping value is XCLIPRATIOSDT * SDEVSDT), but also exploring other options.

= Experiment Name == Who == DTG == DTGEND == Version == Domain == SDEV_SDT == XCLIPRATIOSDT == Description and Comments == Status == Verification =
SPPTonly40h111sdev01Alan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.110.0SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev02Janne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.25.0SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev03Karoliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.33.3SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev04Alan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.42.5SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev05Janne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.52.0SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev06Karoliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.61.65SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev07Alan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.71.4SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev08Janne20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.81.25SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev09Karoliina20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B0.91.1SDEV and XCLIP varyingCompleteYes
SPPTonly40h111sdev10Alan20160530002016060500harmonEPS40h1.1.1(17985)METCOOP25B1.01.0SDEV and XCLIP varyingCompleteYes
diff --git a/previews/PR1153/EPS/Setup/index.html b/previews/PR1153/EPS/Setup/index.html new file mode 100644 index 0000000000..027599db95 --- /dev/null +++ b/previews/PR1153/EPS/Setup/index.html @@ -0,0 +1,6 @@ + +Setup · Harmonie wiki
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diff --git a/previews/PR1153/EPS/System/index.html b/previews/PR1153/EPS/System/index.html new file mode 100644 index 0000000000..8d6f02b957 --- /dev/null +++ b/previews/PR1153/EPS/System/index.html @@ -0,0 +1,49 @@ + +System · Harmonie wiki
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Ensemble mode in the Harmonie script system

Overview

  • Purpose
  • Prerequisites
  • Option checking
  • EPS in the tdf file

Purpose

The purpose of this document is to give more details about how ensemble mode works in the Harmonie script system than can easily be found in other pages. It is meant for system people and developers who need to understand or extend the functionality of HarmonEPS. Such extensions could be e.g. implementation of new initial perturbation techniques.

Prerequisites

You should also read the Howto to get acquainted with what is already implemented.

Having read the prerequisite pages you know that an ensemble experiment is not very different from a deterministic one, you only need to set a few ensemble related variables ENSMSEL, ENSINIPERT, etc. in ecf/config_exp.h and then make some member specific exceptions in the perl "module" suites/harmonie.pm. But there is more going on behind the scenes.

First of all, the ENSMSEL member selection variable exists for convenience, what is used in suites/harmonie.tdf and other scripts is an expanded version of it called ENSMSELX. In the script scr/Start this expansion is done by invoking script scr/Ens_util.pl, which is also used to set a couple of other convenience variables:

# Compute derived EPS quantities, needed in harmonie.tdf
+export ENSSIZE ENSMFIRST ENSMLAST
+ENSSIZE=`perl -S Ens_util.pl ENSSIZE`
+ENSMFIRST=`perl -S Ens_util.pl ENSMFIRST`
+ENSMLAST=`perl -S Ens_util.pl ENSMLAST`
+ENSCTL=`perl -S Ens_util.pl ENSCTL $ENSCTL`

For example, if ENSMSEL=0-8:2, then ENSMSELX=000:002:004:006:008, i.e., a colon-separated list of 3-digit numbers. In the same example, we will have ENSMFIRST=000 and ENSMLAST=008. ENSSIZE will be 5.

Option checking

As explained in the prerequisite documents, variables normally set in ecf/config_exp.h can be overridden for specific ensemble members in suites/harmonie.pm. But how is it verified that the chosen combinations make sense for each member?

The main script that checks for a sensible combination of options in Harmonie is scr/CheckOptions.pl. This script runs already from the Start script before ecFlow is launched in order to catch problems as early as possible. CheckOptions.pl reads ecf/config_exp.h and creates a new file ecf/config_updated.h (but under "merged" repository directory $HM_LIB rather than your experiment directory $HM_WD). In config_updated.h you will find some environment variables that are derived from others, e.g., a lot of domain specific variables (NLON,NLAT,TSTEP etc.) are derived from $DOMAIN. Every ECF task in the system includes first config_exp.h and then config_updated.h. At the very bottom of config_updated.h we find:

if [ ${ENSMBR--1} -ge 0]; then
+  if [ -s $HM_LIB/ecf/config_mbr$ENSMBR.h]; then
+. $HM_LIB/ecf/config_mbr$ENSMBR.h
+  fi
+fi

That is, in ensemble mode, if ecf/config_mbr$ENSMBR.h exists, it will also be sourced by every script. And finally, the way these member specific config files are created can be seen from this passage in the Start script:

# Check options for individual ensemble members if relevant
+if [ $ENSSIZE -gt 0]; then
+   perl -S CheckMemberOptions.pl || exit
+fi

scr/CheckMemberOptions.pl includes the member specific harmonie.pm of course, and then it loops over all the selected members in turn, running CheckOptions.pl with the particular environment settings for the member in question. If a member ($ENSMBR) passes the tests, the file mentioned above, $HM_LIB/ecf/config_mbr$ENSMBR.h is created. It will contain settings for those environment variables mentioned in harmonie.pm that differs from the default settings in config_exp.h. This makes the correct variables available to every script, without those scripts having to repeat the perl &Env checking in harmonie.pm.

EPS in the tdf file

In harmonie.tdf we have many loop constructs like the following example from the MakeCycleInput family:

      family Cycle
+         task Prepare_cycle
+loop(EEE,$ENV{ENSMFIRST},$ENV{ENSMLAST})
+  if( $ENV{ENSMSELX} =~ /@EEE@\b/ and '@EEE@' ne '-1' )
+         family Mbr@EEE@
+            trigger ( Prepare_cycle == complete )
+            complete ( (../../Hour:HH + 24 - $ENV{BeginHour}) % &Env('FCINT','@EEE@') )
+            edit ENSMBR @EEE@
+            task Prepare_cycle
+         endfamily
+  endif
+endloop
+...

As can be seen, all the loops over ensemble members go from the smallest number found in ENSMSEL (ENSMFIRST) to the highest number found (ENSMLAST), with steps of 1, but only if the actual number (@EEE@) is present in the expanded list ENSMSELX is anything put to harmonie.def for this potential member. The perl operator =~ is the pattern match operator and \b means a word boundary (: or end of string in our case).

Note also how every member has its own family Mbr@EEE@ (which will expand to Mbr000, Mbr002, etc. in the harmonie.def file). Another important thing to note is the setting

edit ENSMBR @EEE@

This will first create an ECF variable %ENSMBR%* with different values for each member, which is also turned into a shell variable $ENSMBR in ecf/head.h, which is included by all ECF tasks. From head.h:

ENSMBR=%ENSMBR%
+if [ ${ENSMBR--1} -ge 0]; then
+  ENSMBR=`echo %ENSMBR% | awk '{printf "%%3.3d",$1}'`
+  CYCLEDIR=%YMD%_${HH}/mbr$ENSMBR
+fi
+export ENSMBR

The end message of this is that to get ensemble member number in a script you should use $ENSMBR. In non-ensemble runs ENSMBR will have the value -1.

The statement

complete ( (../../Hour:HH + 24 - $ENV{BeginHour}) % &Env('FCINT','@EEE@') )

deserves more explanation. It is present to account for the fact that not all members need to have the same "forecast interval" FCINT. The Hour families in the tdf now look like this:

      family Hour
+         repeat integer HH &Env('FirstHour','min') 23 &Env('FCINT','min')

i.e., the loop steps with the minimum FCINT value found among the members. Thus, if e.g. some members have FCINT=6 and some FCINT=12, then the statement above sets the family immediately complete for members with FCINT=12 at those cycles that are not divisible by 12 relative to the first cycle (BeginHour). I.e., if the run was started at a 06 or 18 cycle, members with FCINT=12 will be complete (not run) at 00 and 12 cycles, but if the run was started at a 00 or 12 cycle, then members with FCINT=12 will not run at 06 and 18 cycles. This behaviour has confused many users and should perhaps be changed.

Make member specific namelist changes

In Harmonie most namelists are created on the fly from the namelist dictionary. This allows us to make member specific changes to the namelists used in e.g. the forecast. In the following we will describe two ways of doing this.

Through harmonie.pm

Assume we would like to change on parameter in the physcis. First we change the variable in the namelist to be dependent of an environment variable in nam/harmonie_namelists.pm

 NAMPHY0=>{
+  'ALMAV' => "$ENV{ALMAV}",
+ ...
+ },

Second we make sure in suites/harmonie.pm that this environment variable is specified for each member, in this case four.

   'ALMAV'  => [ '200.','100.','50.','300.'],

Finally we have to make sure that the variable is exported in ecf/config_exp.h

 export ALMAV

Make changes to the namelist generation

Another way is to specify a set of namelist changes for each member in nam/harmonie_namelists.pm. We could simply add a definition for e.g. the first member like

 %member_001 = (
+  NAERAD=>{
+   'LRRTM' => '.FALSE.,',
+  },
+  NAMPHY0=>{
+   'BEDIFV' => '0.05,',
+  },
+ ),

To activate the change we also need to change scr/Get_namelist, the script that builds the namelist for us to take the member_$ENSMBR change into account.

 ...
+ forecast|dfi|traj4d)
+    NAMELIST_CONFIG="$DEFAULT dynamics $DYNAMICS $PHYSICS ${DYNAMICS}_${PHYSICS} $SURFACE $EXTRA_FORECAST_OPTIONS member_$ENSMBR"
+ ...

Repeat this for all your members with the changes you would like to apply.

diff --git a/previews/PR1153/ExperimentConfiguration/ConfigureYourExperiment/index.html b/previews/PR1153/ExperimentConfiguration/ConfigureYourExperiment/index.html new file mode 100644 index 0000000000..f386c84b48 --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/ConfigureYourExperiment/index.html @@ -0,0 +1,319 @@ + +Experiment · Harmonie wiki
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Experiment configuration

Introduction

There are several levels on configuration available in HARMONIE. The highest level of configuration is done in ecf/config_exp.h. It includes the environment variables, which are used to control the experimentation. In the following we describe the meaning of the different variables and are described in the order they appear in ecf/config_exp.h.

Host specific paths and environment variables for your system are defined in Env_system.

Build options

# **** Build and bin paths ****
+# Definitions about Build, should fit with hm_rev
+BUILD=${BUILD-yes}              # Turn on or off the compilation and binary build (yes|no)
+BUILD_WITH=${BUILD_WITH-makeup} # Which build system to use (makeup|cmake)

BUILD is a switch for compiling HARMONIE code (yes|no) and BUILD_WITH controls which build system to use when compiling HARMONIE-AROME.

BINDIR=${BINDIR-$HM_DATA/bin}                 # Binary directory

BINDIR is the location of where your HARMONIE binaries will be installed. You can use this to point to binaries outside of your experiment. A few other options for non default configurations exists as well:

COMPILE_ENKF=${COMPILE_ENKF-"no"}             # Compile LETKF code (yes|no)
+COMPILE_DABYFA=${COMPILE_DABYFA-"no"}         # Compile FA/VC code (yes|no)
+SURFEX_OFFLINE_BINARIES="no"                  # Switch to compile and use offline SURFEX binaries

General settings

# **** Misc, defined first because it's used later ****
+
+CNMEXP=HARM                             # Four character experiment identifier
+WRK=$HM_DATA/$CYCLEDIR                  # Work directory
  • CNMEXP: experiment identifier used by MASTERODB
  • WRK is the work directory. The suggested path on ECMWF.atos is $SCRATCH/hm_home/${EXP}/$CYCLEDIR

Archive settings (ECMWF)

Since $SCRATCH is cleaned regularly on ECMWF some files are transferred to ECFS for a more permanent storage by the scripts scr/Archive_host1 and scr/Archive_logs. 

# **** Paths to archive ****
+# We need to define ARCHIVE early since it might be used further down
+
+ARCHIVE_ROOT=$HM_DATA/archive           # Archive root directory
+ECFSLOC=ectmp                           # Archiving site at ECMWF-ECFS: "ec" or ECFS-TMP "ectmp"
+ECFSGROUP=accord                        # Group in which to chgrp the ECMWF archive, "default" or "accord"
+EXTRARCH=$ARCHIVE_ROOT/extract          # Archive for fld/obs-extractions
  • ARCHIVE_ROOT is the path to forecast file archive. Note that at ECMWF this directory is not a permanent storage
  • EXTRARCH is the path to field extraction archive. Note that at ECMWF this directory is not a permanent storage
  • ECFSLOC Archiving site at ECMWF-ECFS (ectmp|ec) Note that files archived on ectmp will be lost after 90 days. If you wish your files to stay longer you should set ECFSLOC=ec.
  • ECFSGROUP Group in which to chgrp the ECMWF archive, (accord|default)

Running Mode

# **** Running mode ****
+RUNNING_MODE=research                   # Research or operational mode (research|operational)
+                                        # operational implies that the suite will continue even if e.g.
+                                        # observations are missing or assimilation fails
+
+SIMULATION_TYPE=nwp                     # Type of simulation (nwp|climate)
  • RUNNING_MODE can be research or operational. Operational is more forgiving in the error handling and e.g. the assimilation will be skipped if Bator doesn't find any observations. Exceptions handled by the operational mode are written to $HM_DATA/severe_warnings.txt
  • SIMULATION_TYPE Switch between nwp and climate type of simulation. The climate simulations are still in an experimental stage.

Model domain settings

Horizontal domain settings. Further information is available here


+# **** Model geometry ****
+DOMAIN=DKCOEXP                          # See definitions in scr/Harmonie_domains.pm
+TOPO_SOURCE=gmted2010                   # Input source for orography. Available are (gmted2010|gtopo30)
+GRID_TYPE=LINEAR                        # Type of grid (LINEAR|QUADRATIC|CUBIC)
  • DOMAIN defines your domain according to the settings in scr/Harmonie_domains.pm (DKCOEXP). The spectral truncation for your domain is determined from NLON and NLAT by scr/Harmonie_domains.pm. Further information on model domains are available here
  • TOPO_SOURCE: Defines input source for model orography (gmted2010|gtopo30). Further information available here: hi-res topography
  • GRID_TYPE: This variable is used to define the spectral truncation used (LINEAR|QUADRATIC|CUBIC). GRID_TYPE is used in scr/Climate and scr/Forecast

Vertical levels

Set the number vertical levels to use. Further information is available here

VLEV=65                                 # Vertical level definition name
+                                        # HIRLAM_60, MF_60,HIRLAM_40, or
+                                        # BOUNDARIES = same number of levs as on boundary file.
+                                        # See the other choices from scr/Vertical_levels.pl
  • VLEV is the name of the vertical levels defined in scr/Vertical_levels.pl (65). Further information is available here. If you intend to run upper air assimilation you must select the same domain and level definition for which you have derived structure functions. Read more Structure Functions

Forecast model

Higher level forecast model settings.

# **** High level forecast options ****
+NAMELIST_BASE="harmonie"                # Input for namelist generation (harmonie|alaro1)
+                                        #   harmonie : The default HARMONIE namelist base nam/harmonie_namelists.pm
+                                        #   alaro1   : For ALARO-1 baseline with only a few configurations available
+                                        #              nam/alaro1_namelists.pm
+DYNAMICS="nh"                           # Hydrostatic or non-hydrostatic dynamics (h|nh)
+VERT_DISC=vfd                           # Discretization in the vertical (vfd,vfe)
+                                        # Note that vfe does not yet work in non-hydrostatic mode
+PHYSICS="arome"                         # Main model physics flag (arome|alaro)
+SURFACE="surfex"                        # Surface flag (old_surface|surfex)
+DFI="none"                              # Digital filter initialization (idfi|fdfi|none)
+                                        # idfi : Incremental dfi
+                                        # fdfi : Full dfi
+                                        # none : No initialization (AROME case)
+LSPBDC=no                               # Spectral boundary contions option off(no) | on(yes)
+LGRADSP=yes                             # Apply Wedi/Hortal vorticity dealiasing
+LUNBC=yes                               # Apply upper nested boundary condition
  • NAMELIST_BASE: Two different namelist sets are available (harmonie|alaro).
  • DYNAMICS: Hydrostatic or non-hydrostatic dynamics (h|nh)
  • VERT_DISC: Vertical discretization (vfd,vfe)
  • PHYSICS: HARMONIE uses either AROME or ALARO for its forecast model physics (arome|alaro)
  • SURFACE: Surface physics flag to use either the SURFEX or the ALADIN surface scheme(surfex|old_surface)
  • DFI: Digital filter initialization switch (idfi|fdfi|none). idfi - incremental dfi, fdfi - full dfi, none - no initialization. See Digital filter for more information
  • LSPBDC: Specify whether the boundary conditions are spectral or not (yes|no)
  • LGRADSP: Switch to apply vorticity dealiasing (yes|no)
  • LUNBC: Switch to apply upper boundary conditions (yes|no)

Physics

Physics options.

# Highlighted physics switches
+CISBA="3-L"                             # Type of ISBA scheme in SURFEX. Options: "3-L" and "2-L".
+CROUGH="NONE"                           # SSO scheme used in SURFEX "NONE"|"'Z01D'"|"'BE04'"
+SURFEX_SEA_ICE="none"                   # Treatment of sea ice in surfex (none|sice)
+MASS_FLUX_SCHEME=edmfm                  # Version of EDMF scheme (edkf|edmfm)
+                                        # Only applicable if PHYSICS=arome
+                                        # edkf is the AROME-MF version
+                                        # edmfm is the KNMI implementation of Eddy Diffusivity Mass Flux scheme for Meso-scale
+HARATU="yes"                            # Switch for HARATU turbulence scheme (no|yes)
+ALARO_VERSION=0                         # Alaro version (1|0)
  • CISBA: If SURFACE is set to surfex this selects the type of ISBA scheme to use in SURFEX. (3-L|2-L). See src/surfex_namelists.pm Namelists
  • CROUGH: If SURFACE is set to surfex this selects the sub-grid scale orography scheme used in SURFEX. (NONE|Z01D|BE04). See src/surfex_namelists.pm Namelist
  • SURFEX_SEA_ICE: Treatment of sea ice in surfex (none|sice). See nam/surfex_namelists.pm
  • MASS_FLUX_SCHEME: If PHYSICS is set to arome choose the mass flux scheme to be used by AROME; edkf to use the AROME-MF scheme or edmfm to use the KNMI developed scheme
  • HARATU: Switch to use the HARATU turbulence scheme
  • ALARO_VERSION: If PHYSICS is set to alaro select version of ALARO to use (0|1)

Assimilation

Data assimilation settings. More assimilation related settings, in particular what observations to assimilate, can be found in src/include.ass

# **** Assimilation ****
+ANAATMO=3DVAR                           # Atmospheric analysis (3DVAR|4DVAR|blending|none)
+ANASURF=CANARI_OI_MAIN                  # Surface analysis (CANARI|CANARI_OI_MAIN|CANARI_EKF_SURFEX|none)
+                                        # CANARI            : Old style CANARI
+                                        # CANARI_OI_MAIN    : CANARI + SURFEX OI
+                                        # CANARI_EKF_SURFEX : CANARI + SURFEX EKF ( experimental )
+                                        # none              : No surface assimilation
+ANASURF_MODE="before"                   # When ANASURF should be done
+                                        # before            : Before ANAATMO
+                                        # after             : After ANAATMO
+                                        # both              : Before and after ANAATMO (Only for ANAATMO=4DVAR)
+INCV="1,1,1,1"                          # Active EKF control variables. 1=WG2 2=WG1 3=TG2 4=TG1
+INCO="1,1,0"                            # Active EKF observation types (Element 1=T2m, element 2=RH2m and element 3=Soil moisture) 
+
+SST=BOUNDARY                            # Which SST fields to be used in surface analysis
+                                        # BOUNDARY          : SST interpolated from the boundary file. ECMWF boundaries utilize a special method.
+                                        #                     HIRLAM and HARMONIE boundaries applies T0M which should be SST over sea.
+LSMIXBC=no                              # Spectral mixing of LBC0 file before assimilation
+[ "$ANAATMO" = 3DVAR] && LSMIXBC=yes
+JB_INTERPOL=no                          # Interpolation of structure functions from a pre-defined domain to your domain
+
  • ANAATMO: Atmospheric analysis (3DVAR|4DVAR|blending|none)
  • ANASURF: Surface analysis (CANARI|CANARIOIMAIN|CANARIEKFSURFEX|none). See nam/surfex_namelists.pm
  • ANASURF_MODE:When the surface should be called (before|after|both)
  • INCV: Active EKF control variables. 1=WG2 2=WG1 3=TG2 4=TG1 (0|1)
  • INCO: Active EKF observation types (Element 1=T2m, element 2=RH2m and element 3=Soil moisture) (0|1)
  • SST: which sea surface temperature field to use in the surface analysis
  • LSMIXBC Spectral mixing of LBC0 file before assimilation (no|yes)
  • JB_INTERPOL Interpolation of structure functions from a pre-defined domain to your domain (no|yes). Note that this has to be used with some caution.

Observations

# **** Observations ****
+OBDIR=$HM_DATA/observations             # Observation file directory
+RADARDIR=$HM_DATA/radardata             # Radar observation file directory
+SINGLEOBS=no                            # Run single obs experiment with observation created by scr/Create_single_obs (no|yes)
+
+USE_MSG=no                              # Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes)
  • OBDIR: Defines the directory that your (BUFR) observation files (obYYYYMMDDHH) are to read from
  • RADARDIR: Defines the directory that your (OPERA HDF5) radar observation files are to be read from. BALTRAD OPERA HDF5, MF BUFR and LOCAL files are treated in scr/Prepradar
  • SINGLEOBS Run single obs experiment with synthetic observation created by scr/Create_single_obs scr/Create_single_obs (no|yes)
  • USE_MSG: Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes), expects MSGcloudYYYYMMDDHH.grib in $OBDIR

4DVAR settings

4DVAR settings (experimental)

# **** 4DVAR ****
+NOUTERLOOP=1                            # 4DVAR outer loops, need to be 1 at present
+ILRES=2,2                               # Resolution (in parts of full) of outer loops
+TSTEP4D=360,360                         # Timestep length (seconds) of outer loops TL+AD
+TL_TEST=yes                             # Only active for playfile tlad_tests
+AD_TEST=yes                             # Only active for playfile tlad_tests
  • NOUTERLOOP: Number of outer loops, need to be 1 at present
  • ILRES: Resolution (in parts of full) of outer loops
  • TSTEP4D: Timestep length (seconds) of outer loops TL+AD
  • TL_TEST: Only active for playfile tlad_tests (yes|no)
  • AD_TEST: Only active for playfile tlad_tests (yes|no)

Digital filter settings

Digital filter initialization settings if DFI is not equal to "none"

# **** DFI setting ****
+TAUS=5400                               # cut-off frequency in second
+TSPAN=5400                              # 7200s or 5400s
  • TAUS cut-off frequency in seconds
  • TSPAN length of DFI run in seconds

Boundaries and initial conditions

Settings for generation of lateral boundaries conditions for HARMONIE. Further information is available here

# **** Lateral boundary conditions ****
+HOST_MODEL="ifs"                        # Host model (ifs|hir|ald|ala|aro)
+                                        # ifs : ecmwf data
+                                        # hir : hirlam data
+                                        # ald : Output from aladin physics
+                                        # ala : Output from alaro physics
+                                        # aro : Output from arome physics
+
+HOST_SURFEX="no"                        # yes if the host model is run with SURFEX
+SURFEX_INPUT_FORMAT=lfi                 # Input format for host model run with surfex (lfi|fa)
+
+NBDMAX=12                               # Number of parallel interpolation tasks
+BDLIB=ECMWF                             # Boundary experiment, set:
+                                        # ECMWF to use MARS data
+                                        # RCRa  to use RCRa data from ECFS
+                                        # Other HARMONIE/HIRLAM experiment
+
+BDDIR=$HM_DATA/${BDLIB}/archive/@YYYY@/@MM@/@DD@/@HH@   # Boundary file directory,
+                                                        # For more information, read in scr/Boundary_strategy.pl
+
+SST_SOURCES=$HOST_MODEL                 # List of external SST sources like $HOST_MODEL|HIROMB|NEMO|ROMS|ECE
+                                        # See util/gl/ala/merge_ocean.F90 for more details
+SST_IS_LSM="auto"                       # Switch for using SST as LSM (lsm|sst|auto)
+
+INT_BDFILE=$WRK/ELSCF${CNMEXP}ALBC@NNN@                 # Interpolated boundary file name and location
+
+BDSTRATEGY=simulate_operational # Which boundary strategy to follow
+                                # as defined in scr/Boundary_strategy.pl
+                                #
+                                # available            : Search for available files in BDDIR, try to keep forecast consistency
+                                #                        This is ment to be used operationally
+                                # simulate_operational : Mimic the behaviour of the operational runs using ECMWF LBC,
+                                #                        i.e. 6 hour old boundaries
+                                # same_forecast        : Use all boundaries from the same forecast, start from analysis
+                                # analysis_only        : Use only analysises as boundaries
+                                # era                  : As for analysis_only but using ERA interim data
+                                # latest               : Use the latest possible boundary with the shortest forecast length
+                                # RCR_operational      : Mimic the behaviour of the RCR runs, ie
+                                #                        12h old boundaries at 00 and 12 and
+                                #                        06h old boundaries at 06 and 18
+                                # enda                 : use ECMWF ENDA data for running ensemble data assimilation
+                                #                        or generation of background statistic.
+                                #                        Note that only LL up to 9h is supported
+                                #                        with this you should set your ENSMSEL members
+                                # eps_ec               : ECMWF EPS members (on reduced gaussian grid)
+                                #                      : Only meaningful with ENSMSEL non-empty, i.e., ENSSIZE > 0
+
+BDINT=1                         # Boundary interval in hours
+
+SURFEX_PREP="yes"                # Use offline surfex prep facility (Alt. gl + Fullpos + prep )
  • HOST_MODEL defines the host model that provides the lateral boundaries conditions for your experiment
    • hir for HIRLAM.
    • ald for ALADIN
    • ala for ALARO
    • aro for AROME
    • ifs for ECMWF-IFS.
  • HOST_SURFEX Set to yes if host model runs with SURFEX. (no|yes)
  • SURFEX_INPUT_FORMAT Input format for host model run with surfex (lfi|fa)
  • BDLIB is the experiment to be used as boundaries. Possible values, ECMWF for IFS from MARS (default), RCRa for HIRLAM-RCR from ECFS or other HARMONIE experiment.
  • BDDIR is the boundary file directory. The possible date information in the path must be given by using UPPER CASE letters (@YYYY@=year,@MM@=month,@DD@=day,@HH@=hour,@FFF@=forecast length).
  • BDSTRATEGY Which boundary strategy to follow i.e. How to find the right boundaries with the right age and location. Read more
  • BDINT is boundary interval in hours.
  • BDCLIM is the path to climate files corresponding the boundary files, when nesting HARMONIE to HARMONIE.
  • INT_BDFILE is the name and location of the interpolated boundary files. These files are removed every cycle, but if you wish to save them you can specify a more permanent location here. By setting INT_BDFILE=$ARCHIVE the interpolated files will be stored in your archive directory.
  • NBDMAX Number of parallel boundary interpolation tasks in mSMS. The current default value is 12.
  • SST_SOURCES defines the host model used for SST & SIC
  • SST_IS_LSM in interpolation of SST/SIC from host to HARMONIE grid, use SST (with missing values above land) to derive LSM, or use the actual provided LSM. The default, auto, makes a smart guess based on host model.
  • SURFEX_PREP Use SURFEX tool PREP instead of gl+FULLPOS to prepare SURFEX initial conditions. This is now the default. The gl+FULLPOS version is still working but will not be maintained in the future (no|yes)

Read more about the boundary file preparation here.

Ensemble mode settings

# *** Ensemble mode general settings. ***
+# *** For member specific settings use msms/harmonie.pm ***
+ENSMSEL=                                # Ensemble member selection, comma separated list, and/or range(s):
+                                        # m1,m2,m3-m4,m5-m6:step    mb-me == mb-me:1 == mb,mb+1,mb+2,...,me
+                                        # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.
+ENSINIPERT=                             # Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv.
+ENSCTL=                                 # Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.
+ENSBDMBR=                               # Which host member is used for my boundaries? Use harmonie.pm to set.
+ENSMFAIL=0                              # Failure tolerance for all members.
+ENSMDAFAIL=0                            # Failure tolerance for members doing own DA. Not implemented.
+SLAFK=1.0                               # best set in harmonie.pm
+SLAFLAG=0                               # --- " ---
+SLAFDIFF=0                              # --- " ---
+
+# *** This part is for EDA with observations perturbation
+PERTATMO=none                           # ECMAIN  : In-line observation perturbation using the default IFS way.
+                            			# CCMA    : Perturbation of the active observations only (CCMA content)
+	                            		#           before the Minimization, using the PERTCMA executable.
+                            			# none    : no perturbation of upper-air observations
+
+PERTSURF=none                           # ECMA    : perturb also the surface observation before Canari (recommended
+                            			#         : for EDA to have full perturbation of the initial state).
+                                        # model   : perturb surface fields in grid-point space (recursive filter)
+			                            # none    : no perturbation for surface observations.
+
+FESTAT=no                               # Extract differences and do Jb calculations (no|yes)
+
  • ENSMSEL Ensemble member selection, comma separated list, and/or range(s):
     # m1,m2,m3-m4,m5-m6:step    mb-me == mb-me:1 == mb,mb+1,mb+2,...,me
+  # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.
  • ENSINIPERT Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv, slaf.
  • ENSMFAIL Failure tolerance for all members. Not yet implemented.
  • ENSMDAFAIL Failure tolerance for members doing own DA. Not yet implemented.
  • ENSCTL Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.
  • ENSBDMBR Which host member is used for my boundaries? Use harmonie.pm to set.
  • SLAFK Perturbation coefficients for SLAF, experimental
  • SLAFLAG Time lag for boundaries in SLAG, experimental

For member dependent settings see msms/harmonie.pm.

  • PERTATMO Observation perturbation with three options

    • ECMA : In-line observation perturbation using the default IFS way.

    • CCMA : Perturbation of the active observations only (CCMA content) before the Minimization, using the PERTCMA executable.

    • none : no perturbation of upper-air observations

    • PERTSURF Perturbation of surface observations before Canari (recommended for EDA to have full perturbation of the initial state) (no|yes).

  • FESTAT Extract differences and do Jb calculations (no|yes). Read more about the procedure here.

Aerosol choices

USEAERO influences import of near-real-time aerosol via boundaries and use of aerosol in the forecast model. It selects use of n.r.t, climatology or no aerosol. When USEAERO=climaero, CAERO selects data for monthly climate file generation from existing sources (4 species of Tegen or CAMS AOD@550nm or 11 species of CAMS vertically integrated mass). CAMS aerosol mass climatology [camscms] and MOCAGE n.r.t. [mocanrt] are currently not available for within HARMONIE forecast system. 

# **** Aerosol choices [USEAERO implies aerosol usage in physics via forecast_model_settings!] ****
+USEAERO=camsnrt # Aerosol usage: camsnrt | climaero | noaero | [mocanrt]
+CAERO=tegenaod  # Aerosol climatology generation: tegenaod | [camscms not yet available]

Climate file settings

Climate file generation settings. Further information is available here

# **** Climate files ****
+CREATE_CLIMATE=${CREATE_CLIMATE-yes}    # Run climate generation (yes|no)
+CLIMDIR=$HM_DATA/climate/$DOMAIN        # Climate files directory
+BDCLIM=$HM_DATA/${BDLIB}/climate        # Boundary climate files (ald2ald,ald2aro)
+                                        # This should point to intermediate aladin
+                                        # climate file in case of hir2aro,ifs2aro processes.
+ECOCLIMAP_PARAM_BINDIR=$HM_DATA/climate # Binary cover param files directory
+
+# Physiography input for SURFEX
+ECOCLIMAP_VERSION=SG                    # Version of ECOCLIMAP for surfex
+                                        # Available versions are 1.1-1.5,2.0-2.2,2.2.1,2.5_plus and SG
+                                        # FLake requires 2.5_plus or SG
+XSCALE_H_TREE=1.0                       # Scale the tree height with this factor
+# Activate inclusion of fake trees for open land VEGTYPEs. The vector positions represent:
+# 1 NVT_BOGR, 2 NVT_GRAS, 3 NVT_TROG, 4 NVT_C3W, 5 NVT_C3S, 6 NVT_C4, 7 NVT_FLGR
+LFAKETREE=.F.,.F.,.F.,.F.,.F.,.F.,.F.
+LDB_VERSION=3.0                         # Lake database version.
+SOIL_TEXTURE_VERSION=SOILGRID           # Soil texture input data FAO|HWSD_v2|SOILGRID|SOILGRID_v2
+
+# Path to pre-generated domains, in use if USE_REF_CLIMDIR=yes set in Env_system
+# Saves time for quick experiments
+REF_CLIMDIR=ec:/hlam/harmonie_climdir/release-43h2.1.1/$DOMAIN/$GRID_TYPE/$ECOCLIMAP_VERSION
+
  • CREATE_CLIMATE: Run climate generation (yes|no). If you already have a full set of climate files generated in CLIMDIR you can set this flag to no for a faster run.
  • CLIMDIR: path to the generated climate files for your specific domain. The input data for the climate generation is defined by HM_CLDATA defined in Env_system -> config-sh/config.YOURHOST
  • BDCLIM: path to intermediate climate files
  • ECOCLIMAP_PARAM_BINDIR: Direcotry where the binray version of ECOCLIMAP 1st generation parameter files will be stored.
  • ECOCLIMAP_VERSION is the version of ECOCLIMAP to be used with SURFEX. Available versions are 1.1-1.5,2.0-2.2,2.2.1,2.5_plus,SG. See surfex_namelists.pm Namelist
  • XSCALE_H_TREE: A factor that scales the original tree height that comes from the database.
  • LFAKETREE: Only relevant for ECOCLIMAP_VERSION=SG. It activates the inclusion of fake trees for open land VEGTYPEs to increase the roughness length. The vector positions represent 1 NVT_BOGR, 2 NVT_GRAS, 3 NVT_TROG, 4 NVT_C3W, 5 NVT_C3S, 6 NVT_C4, 7 NVT_FLGR.
  • LDB_VERSION: Specifies the version of the Global Lake Database used for FLake.
  • SOIL_TEXTURE_VERSION Soil texture input data (FAO|HWSD_v2|SOILGRID|SOILGRID_v2). See surfex_namelists.pm more info.
  • REF_CLIMDIR: Specifies the location of possible pre-generated domains. Is used if USE_REF_CLIMDIR=yes set in Env_system.

Archiving settings

# **** Archiving settings ****
+ARCHIVE_ECMWF=yes                       # Archive to $ECFSLOC at ECMWF (yes|no)
+# Archiving selection syntax, settings done below
+#
+# [fc|an|pp]_[fa|gr|nc] : Output from
+#  an : All steps from upper air and surface analysis
+#  fc : Forecast model state files from upper air and surfex
+#  pp : Output from FULLPOS and SURFEX_LSELECT=yes (ICMSHSELE+NNNN.sfx)
+# in any of the formats if applicable
+#  fa : FA files
+#  gr : GRIB[1|2] files
+#  nc : NetCDF files
+# sqlite|odb|VARBC|bdstrategy : odb and sqlite files stored in odb_stuff.tar
+# fldver|ddh|vobs|vfld : fldver/ddh/vobs/vfld files
+# climate : Climate files from PGD and E923
+# Some macros
+# odb_stuff=odb:VARBC:bdstrategy:sqlite
+# verif=vobs:vfld
+# fg : Required files to run the next cycle

Forecast output

# **** Cycles to run, and their forecast length ****
+
+TFLAG="h"                               # Time flag for model output. (h|min)
+                                        # h   = hour based output
+                                        # min = minute based output
+
+
+# The unit of HWRITUPTIMES, FULLFATIMES, ..., SFXFWFTIMES should be:
+#   - hours   if TFLAG="h"
+#   - minutes if TFLAG="min"
+
+# Writeup times of # history,surfex and fullpos files
+# Comma separated list, and/or range(s) like:
+# t1,t2,t3-t4,t5-t6:step    tb-te == tb-te:1 == tb,tb+1,tb+2,...,te
+
+if [ -z "$ENSMSEL"] ; then
+  # Standard deterministic run
+  HH_LIST="00-21:3"                       # Which cycles to run, replaces FCINT
+  LL_LIST="12,3"                          # Forecast lengths for the cycles [h], replaces LL, LLMAIN
+                                          # The LL_LIST list is wrapped around if necessary, to fit HH_LIST
+  HWRITUPTIMES="00-21:3,24-60:6"          # History file output times
+  FULLFAFTIMES=$HWRITUPTIMES              # History FA file IO server gather times
+  PWRITUPTIMES="00-60:3"                  # Postprocessing times
+  PFFULLWFTIMES=-1                        # Postprocessing FA file IO server gathering times
+  VERITIMES="00-60:1"                     # Verification output times, may change PWRITUPTIMES
+  SFXSELTIMES=$HWRITUPTIMES               # Surfex select file output times
+                                          # Only meaningful if SURFEX_LSELECT=yes
+  SFXSWFTIMES=-1                          # SURFEX select FA file IO server gathering times
+  SWRITUPTIMES="00-06:3"                  # Surfex model state output times
+  SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times
+  if [ "$SIMULATION_TYPE" == climate]; then  #Specific settings for climate simulations
+    HWRITUPTIMES="00-760:6"                 # History file output times
+    FULLFAFTIMES="00-760:24"                # History FA file IO server gather times
+    PWRITUPTIMES=$HWRITUPTIMES              # Postprocessing times
+    VERITIMES=$HWRITUPTIMES                 # Verification output times, may change PWRITUPTIMES
+    SFXSELTIMES=$HWRITUPTIMES               # Surfex select file output times - Only meaningful if SURFEX_LSELECT=yes
+    SWRITUPTIMES="00-760:12"                # Surfex model state output times
+    SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times
+  fi
+
+  ARSTRATEGY="climate:fg:verif:odb_stuff: \
+              [an|fc]_fa:pp_grb"          # Files to archive on ECFS, see above for syntax
+
+else
+  # EPS settings
+  HH_LIST="00-21:3"                       # Which cycles to run, replaces FCINT
+  LL_LIST="36,3,3,3"                      # Forecast lengths for the cycles [h], replaces LL, LLMAIN
+  HWRITUPTIMES="00-06:3"                  # History file output times
+  FULLFAFTIMES=$HWRITUPTIMES              # History FA file IO server gather times
+  PWRITUPTIMES="00-48:1"                  # Postprocessing times
+  PFFULLWFTIMES=-1                        # Postprocessing FA file IO server gathering times
+  VERITIMES="00-60:3"                     # Verification output times, may change PWRITUPTIMES
+  SFXSELTIMES=$HWRITUPTIMES               # Surfex select file output times
+                                          # Only meaningful if SURFEX_LSELECT=yes
+  SFXSWFTIMES=-1                          # SURFEX select FA file IO server gathering times
+  SWRITUPTIMES="00-06:3"                  # Surfex model state output times
+  SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times
+
+  ARSTRATEGY="climate:fg:verif:odb_stuff: \
+              an_fa:pp_grb"               # Files to archive on ECFS, see above for syntax
+
+fi
+

The writeup times of model output can be defined as a space separated list or as a fixed frequency for model history files, surfex files and postprocessed files respectively. The unit of the steps of WRITUPTIMES, SWRITUPTIMES, PWRITUPTIMES and OUTINT should be in hours or minutes depending on the TFLAG Regular output interval can be switched on by setting OUTINT>0. Consequently, OUTINT will override the WRITUPTIMES lists!

  • TFLAG: Time flag for model output. Hourly or minute-based output (h|min)
  • HWRITUPTIMES: Output list for history files. Default is 00-21:3,24-60:6 which will output files every 3 hours for 00-21 and every 6 hours for 24-60.
  • VERITIMES: Output list for verification files. Default is 00-60:1 which will produce file every 1 hour for 00-60
  • SWRITUPTIMES Output list for surfex files. Default is 00-06:3 which output a SURFEX file every 3 hours for 00-06.
  • PWRITUPTIMES Output list for fullpos (post-processed) files. Default is 00-21:3,24-60:6 which will output files every 3 hours for 00-21 and every 6 hours for 24-60.
SURFEX_LSELECT="yes"                    # Only write selected fields in surfex outpute files. (yes|no)
+                                        # Check nam/surfex_selected_output.pm for details.
+                                        # Not tested with lfi files.
+INT_SINI_FILE=$WRK/SURFXINI.fa          # Surfex initial file name and location
+
+# **** Postprocessing/output ****
+IO_SERVER=yes                           # Use IO server (yes|no). Set the number of cores to be used
+                                        # in your Env_submit
+IO_SERVER_BD=yes                        # Use IO server for reading of boundary data
+POSTP="inline"                          # Postprocessing by Fullpos (inline|offline|none).
+                                        # See Setup_postp.pl for selection of fields.
+                                        # inline: this is run inside of the forecast
+                                        # offline: this is run in parallel to the forecast in a separate task
+
+FREQ_RESET_TEMP=3                       # Reset frequency of max/min temperature values in hours, controls NRAZTS
+FREQ_RESET_GUST=1                       # Reset frequency of max/min gust values in hours, controls NXGSTPERIOD
+                                        # Set to -1 to get the same frequency _AND_ reset behaviour as for min/max temperature
+                                        # See yomxfu.F90 for further information.
+

  • SURFEX_LSELECT: Switch to write a selection of fields in SURFEX output files (yes|no). See surfex_selected_output.pm for more info. Namelist

  • INT_SINI_FILE: name and location of the initial SURFEX file

  • ARCHIVE_ECMWF: archive files to ECFSLOC at ECMWF (yes|no)

  • IO_SERVER: Use IO server (yes|no). If set to "yes" changes may be required in Env_submit -> config-sh/submit.YOURHOUST

  • POSTP: Postprocessing by Fullpos (inline|offline|none).

  • FREQ_RESET_[TEMP|GUST]: Reset frequency of max/min values in hours, controls NRAZTS. Default is every 3/1 hours

# **** GRIB ****
+CONVERTFA=yes                           # Conversion of FA file to GRIB/nc (yes|no)
+ARCHIVE_FORMAT=GRIB1                    # Format of archive files (GRIB1|GRIB2|nc). nc format yet only available in climate mode
+NCNAMES=nwp                             # Nameing of NetCDF files follows (climate|nwp) convention.
+RCR_POSTP=no                            # Produce a subset of fields from the history file for RCR monitoring
+                                        # Only applicable if ARCHIVE_FORMAT=GRIB
+MAKEGRIB_LISTENERS=1                    # Number of parallel listeners for Makegrib
+                                        # Only applicable if ARCHIVE_FORMAT=GRIB
+

More options on fullpos postprocessing can be found in scr/Select_posp.pl

  • CONVERTFA: Conversion of FA files to GRIB or NetCDF (yes|no)
  • ARCHIVE_FORMAT: Format of archive files (GRIB1|nc). NetCDF format yet only available in climate mode
  • RCR_POSTP: Produce a subset of fields from the history file for RCR monitoring (yes|no). This is only applicable if ARCHIVE_FORMAT=GRIB1|GRIB2
  • MAKEGRIB_LISTENERS: Number of parallel listeners for Makegrib. Only applicable if ARCHIVE_FORMAT=GRIB1|GRIB2

More options on file conversion can be found in scr/Makegrib

DDH files

# **** DDH ****
+USEDDH="yes"                            # Use DDH. (yes|no)
+
  • Permits to include the namelist NAMDDH in the forecast namelist.
  • The DDH files will be saved in the ARCHIVE directory.
  • To archive the DDH files to ECFSLOC at ECMWF, include the option "ddh" in ARSTRATEGY
  • Read more in DDH in HARMONIE-AROME

Verification and monitoring

# **** Verification extraction ****
+OBSEXTR=yes                             # Extract observations from BUFR (yes|no)
+FLDEXTR=yes                             # Extract model data for verification from model files (yes|no)
+FLDEXTR_TASKS=1                         # Number of parallel tasks for field extraction
+VFLDEXP=$EXP                            # Experiment name on vfld files
+SCREXTR=no                              # Use Screening (NCONF=002) to produce O-F data
+SCREXTR_TASKS=1                         # Number of parallel tasks for O-F extraction
+FGREFEXP=${FGREFEXP-undef}              # reference experiment name for FirstGuess
+OBREFEXP=${OBREFEXP-undef}              # reference experiment name for ODBs
  • OBSEXTR: Extract observations for verification from BUFR (yes|no)
  • FLDEXTR: Extract model data for verification from model files (yes|no)
  • *FLDEXTR_TASKS: Number of parallel tasks for field extraction
  • VFLDEXP: Change vfld file name to this string
  • SCREXTR : Switch on extraction of O-F data for verification using Screening (NCONF=002)
  • SCREXTR_TASKS : Number of parallel tasks for O-F extraction
  • FGREFEXP=${FGREFEXP-undef} : reference experiment name for FirstGuess (useful with PLAYFILE=allobsver)
  • OBREFEXP=${OBREFEXP-undef} : reference experiment name for ODBs (useful with PLAYFILE=allobsver)

Read more about the verification package here

Field verification

# *** Field verification ***
+FLDVER=no                               # Main switch for field verification (yes|no)
+FLDVER_HOURS="06 12 18 24 30 36 42 48"  # Hours for field verification
  • FLDVER Main switch for field verification (yes|no). The field verification extracts some selected variables for calculation of bias, rmse, stdv and averages on the model grid.
  • FLDVER_HOURS Hours for field verification

More options on field verification can be found in scr/Fldver and scr/AccuFldver

Observation monitoring and general diagnostics

# *** Observation monitoring ***
+OBSMONITOR=obstat                       # Create Observation statistics plots
+                                        # Format: OBSMONITOR=Option1:Option2:...:OptionN
+                                        # obstat: Daily usage maps and departures
+                                        # no: Nothing at all
+                                        #
+                                        # obstat is # only active if ANAATMO != none
+OBSMON_SYNC=no                          # Sync obsmn sqlite tables from HOST1 (if set) to HOST0 (yes|no)

OBSMONITOR Selection for observation statistics plots

  • obstat Observations usage. Read more here.
  • no No monitoring

Note that this is only active if ANAATMO != none

Mail addresses

# Recipient(s) to send mails to (you@work,you@home)
+MAIL_ON_ABORT=                          # when a task aborts
+MAIL_TESTBED=                           # testbed results summary
  • MAIL_ON_ABORT e-mail address to send a mail to if a task fails in ecFlow
  • MAIL_TESTBED e-mail address to send a mail to with a summary of the testbed results

Testbed

export TESTBED_LIST="AROME AROME_1D AROME_3DVAR \
+                     AROME_BD_ARO AROME_BD_ARO_IO_SERV \
+                     HarmonEPS HarmonEPS_IFSENS \
+                     AROME_CLIMSIM"
  • TESTBED_LIST contains the configurations that will be run in the testbed
diff --git a/previews/PR1153/ExperimentConfiguration/How_to_use_hires_topography/index.html b/previews/PR1153/ExperimentConfiguration/How_to_use_hires_topography/index.html new file mode 100644 index 0000000000..ccbd18ab73 --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/How_to_use_hires_topography/index.html @@ -0,0 +1,190 @@ + +HiRes Topography · Harmonie wiki
GitHub

How to Introduce New High-Resolution Topography into Harmonie

Introduction

This page describes how to set up and use an ultra-high resolution topographic data set for your Harmonie domain, instead of the current standard GTOPO30 data set.

The data replacing GTOPO30 is likely to be much denser (by a factor of 100 or more), so it probably doesn’t make much sense for each centre to store a complete quasi-global set. It is much more practical for each centre to generate and store a local sub-set of the high-resolution topography to encompass just their own computational domains. First the principal process is described and in [#DoitallinsideHARMONIE here] the streamlined implementation, with the coarser GMTED2010 data, in the system is summarized.

Background

The standard topographic data set currently used by Harmonie is the global GTOP030. This is a “Digital Elevation Model” (DEM) with a horizontal resolution of 30 arc seconds (approx. 1km). As Harmonie model configurations start to use grid-sizes of 1km or smaller, the computational grid can have finer resolution than the topographic grid, and so topography becomes a new limiting factor in the full model resolution.

It is possible now to overcome this limitation of the relatively coarse GTOPO30 topography by replacing it with a much finer-scale DEM. One such DEM representation of the earth’s surface has been available since Oct. 2011. This is version 2 of the DEM derived from the Aster instrument on board the Terra satellite, as part of the collaboration between Japan’s Ministry of Economy, Trade and Industry (METI), and NASA in the U.S. In the Aster dataset, surface elevations are reported at a horizontal resolution of approx. 30m. Thus the Aster data is about 900 times denser than GTOPO30, i.e., has about 30 times higher resolution in each horizontal dimension. The average error in the vertical elevation estimates is approx. 6-10m (I think of this as the typical height of a tree or a house – the kind of things that can confuse the satellite radiometer into reporting a false surface elevation).

More information about the Aster DEM is available here .

Even for “relatively” coarse Harmonie grids (perhaps even 2.5km meshes), the “slope”, “roughness”, “silhouette” and other physical attributes of the topography used by Harmonie can be provided much more accurately by Aster data than by GTOPO30.

Obtaining ASTER high-resolution DEM data

The data are publicly and freely available here. Since the resolution is so fine, the complete dataset is quite voluminous: the compressed file for each $1^o x 1^o$ (longitude-latitude) tile or “granule” at $50^o$ N is about 15MB if totally land-covered. To obtain the data you want:

  1. Draw a bounding rectangle around your domain of interest (even all of Europe!) at that “reverb” web-site;
  2. Select“ASTER Global Digital Elevation Model V0002” from the list of data sets further down the same web-page;
  3. Click the “Search for Granules” box at the bottom of the page.

From here you will be brought through a standard registration process familiar to anyone who has ever bought a train ticket online – the main difference being that the Aster data are free. Once registration is complete, you should receive an email after 1-2 days telling you that your data is ready, and how you can ftp it to your own computer.

I obtained 97 “granules” of such data (i.e., DEM files for an area approximately 1^o^ square), covering the islands of Ireland and the UK ($14^o$ longitude x $11^o$ latitude). The 57 “missing” granules are simply ocean regions that encompass no land at all. No granules are provided for any 1-degree tile that is completely over the open ocean, since sea-level elevation is assumed to be zero. Each granule is a separate zip file, varying in size up to about 15MB, depending on the fraction of land area in each 1-degree tile and the complexity of the topography itself. Granules are identified by the latitude and longitude of the southwest (lower-left) corner (or more precisely, of the geometric centre of the southwest corner pixel), which is given in the file-name.

Processing the Raw Aster Data

Each “granule” of data is a zip file that unzips to 2 “tiff” files (ASTGM2_*_dem.tif, containing the actual data, and ASTGM2_*_num.tif, containing “quality assessment”), along with a generic README.pdf.

The Quality Assessment files (*num.tif) contains the number of “stereo scene pairs” used to determine elevation at each pixel (if positive) or the source of non-ASTER elevation data used to replace bad ASTER DEM (if negative). Values less than 5 are associated with relatively larger errors in the elevation measurement. Larger values are associated with more accurate final estimates of surface elevation.

This information can help to identify those regions where the Aster values may need to be merged or replaced with elevation data from some other source.

For the purposes of formatting the DEM data for Harmonie, the first step is to extract the (longitude, latitude, elevation) triplet for each “pixel” (or “grid-point”) from the ASTGM2_*_dem.tif files.

This can be done using software such as the Geospatial Data Abstraction Library (GDAL) open-source tools, available here. Once installed, these can be used to read, merge, and otherwise manipulate geoTIFF files.

The command I used to generate a simple text file containing longitude, latitude and elevation from an ASTGM2_*_dem.tif file is, e.g.,

gdal_translate –of XYZ ASTGM2_N59W006_dem.tif ASTGM2_N59W006_xyz.txt

This fills the ascii output file ASTGTM2_N59W006_xyz.txt with rows of (longitude, latitude, elevation) values, starting from the northwest (top-left) corner (-6, 60), and proceeding eastwards to (-5,60), then moving south to the next row, ending up at the southeast (bottom-right) corner (-5,59). Each output text file contains 3601 x 3601 data-points, i.e., 12,967,201 rows, and uses over 550 MB of storage. Note that the various granules overlap each other at the boundaries (the line of boundary data is included in each bounding file). Elevation is in units of metres.

This is relatively straightforward and only needs to be done once for each file, even if there may be more efficient ways to do it.

The command above can easily be scripted to process the full collection of *dem.tif files:

for i in $( ls ASTGTM2_*_dem.tif ); do
+  gdal_translate -of XYZ $i $i.xyz
+done

To obtain some information about any particular tif file, use the gdalinfo command.

Next, the data from each separate $1^o x 1^o$ text file were combined into a single flat unformatted little-endian binary file consisting of surface elevation every 30m or so encompassing the entire Harmonie domain. For an Ireland/UK domain, bounded between latitudes 49 and 60 deg. N, and between longitudes 11 deg. W and 3 deg. E, this contains approx. 40,000 (latitude) x 50,000 (longitude) data points – or about 2 billion points altogether. (2 billion points stored in 2-byte integer format use about 4GB of storage). A domain like this can easily be extended to the west and north, where there is no land and where sea-level elevation is simply zero. In order to extend it to the south or east, however, where there is land, extra Aster granules would be required. See the attached standalone program (or [wiki:hirestopoggather_tiles.f]) for the details of what I did (crude but effective; nothing fancy and probably not the best way, but simple and it works). The file is written with the first element at the northwest corner, progressing eastwards, then south, with the last element at the southeast corner.

Errors and Data Gaps

I did not notice any gaps or "bad data" in the Aster topography over Ireland and the UK, but there do seem to be some gaps, negative pixels or positive "spikes" elsewhere, esp. over Scandanavia and other high latitudes. The "quality assessment" numbers in the ASTGM2_*_num.tiffiles mentioned above can help to identify bad or dubious elevation values. Nicolas Bauer (FMI) has a procedure for detecting and correcting these.

Formatting topographic data for use by Harmonie

The main topographic data files used by Harmonie are in $HM_CLDATA/PGD, and are called gtopo30.hdr and gtopo30.dir . In principle, all that is required now is to replace these 2 files (containing GTOPO30 data) with equivalent files containing Aster data. There is no need to change the file names or to edit any Harmonie source code – just create new files with the old names, and containing Aster instead of GTOPO30 data.

The gtopo30.hdr file is the “header” file, containing meta-data about the main data file (gtopo30.dir). The header file contains all the information needed by the MASTERODB executable to read in the real data from the gtopo30.dir file, and to use it appropriately within the rest of Harmonie. The original gtopo30.hdr file contains:

GTOPO30 orography model, rewritten by V. Masson, CNRM, Meteo-France, 16/07/98
+nodata: -9999
+north: 90.
+south: -90.
+west: -180.
+east: 180.
+rows: 21600
+cols: 43200
+recordtype: integer 16 bytes

Note that this file specifies a global domain. To use Aster data for the Ireland/UK domain, this content ended up being replaced with:

ASTER orography model, starting UL
+nodata: -9999
+north: 60
+south: 49
+west: -11
+east: 3
+rows: 39601
+cols: 50401
+recordtype: integer 16 bits

While the number of rows and columns is about the same as before, the topographic domain is much smaller.

In the Harmonie source, the key files that are involved in reading and parsing the gtopo30.hdr and gtopo30.dir files are surfex/pgd/zoom_pgd_orography.F90 and surfex/aux/read_direct.F90. Parsing these files reveals what is needed to write gtopo30.hdr and gtopo30.dir files containing Aster data. I wrote another simple program to do this, based largely on programs already written by Nicolas Bauer and Imanol Guerrero, and provided by Laura Rontu. This program is available as attachement, or at: [wiki:hires_convert.f] .

The part of this file that writes the header data is:

!    Header file for harmonie:
+       open(unit=23,file="hires_irluk_hm.hdr",form='formatted',
+     &      status='new',IOSTAT=ios)
+            write(23,FMT='(A)') "GTOPO30 orography model, starting UL"
+            write(23,FMT='(A)') "nodata: -9999"
+                  write(caux,*) north
+            write(23,FMT='(A)') "north: "//adjustl(trim(caux))
+                  write(caux,*) south
+            write(23,FMT='(A)') "south: "//adjustl(trim(caux))
+                  write(caux,*) west
+            write(23,FMT='(A)') "west: "//adjustl(trim(caux))
+                  write(caux,*) east
+            write(23,FMT='(A)') "east: "//adjustl(trim(caux))
+                  write(caux,*) npts_ns
+            write(23,FMT='(A)') "rows: "//adjustl(trim(caux))
+                  write(caux,*) npts_ew
+            write(23,FMT='(A)') "cols: "//adjustl(trim(caux))
+            write(23,FMT='(A)') "recordtype: integer 16 bits"

The character variable “caux” is used here as an “internal” file to hold the various domain parameters corresponding to the Aster data.

The main DEM data file is written in integer*2 format to the new gtopo30.dir file, as in:

      integer*2, allocatable :: elev_hm(:,:)
+      integer*2                   ::  idata
+      character*2                :: cdata, ctmp
+      equivalence (idata,cdata)
+...   
+      allocate (elev_hm(npts_ew,npts_ns))
+!  Start of main (outer) loop:
+       do j=1,npts_ns
+          read(21) elevation
+          elev_hm(:,j) = elevation(:)
+       enddo
+          close(21)
+          deallocate(elevation)
+
+!  So now elev_hm should be filled.
+
+!  Byte-swap from little to big-endian (for sake of Harmonie build...):
+       do j=1,npts_ns
+          do i=1,npts_ew
+              idata = elev_hm(i,j)
+              ctmp(1:1) = cdata(1:1)
+              cdata(1:1) = cdata(2:2)
+              cdata(2:2) = ctmp(1:1)
+              elev_hm(i,j) = idata
+          enddo
+       enddo
+
+       open(unit=24,file="gtopo30.dir",form="unformatted",
+     &      access="direct",recl=npts_ns*npts_ew*2,status="new",err=999)
+
+!  Write starting from NW corner, working east, then south one row:
+        write(24,rec=1) ((elev_hm(i,j),i=1,npts_ew), j=1,npts_ns)

Note the explicit conversion to big-endian (so no -convert big-endian compiler flag should be used with this).

Note too that when using Intel compilers, the -assume byterecl option must be used so that record lengths are in bytes instead of (4-byte) words.

Once those simple programs are run to perform straightforward file-format conversions, the resulting gtopo30.hdr and gtopo30.dir files (containing Aster data) can be used directly in $CLDATA/PGD in place of the original “real” ones (containing GTOPO30 data). Those files are read by Harmonie during the “Climate” phase, and generate reference “climate” files PGD.lfi and PGD.fa. These remain constant and are not generated again for each Harmonie installation. They are read in by the surfex module during each Forecast phase, and used wherever surface topographic data is needed.

Do it all inside HARMONIE

We discovered that there are a lot of "holes" in the ASTER data over Scandinavia, so instead we focused on the GMTED2010 data set. This almost global dataset is compiled of different high resolution DEM sources and the highest available resolution is 7.5 arc seconds (~250 meters). It is used by Meteo-France for their 1.3 km domain. This data also comes in tiles of big tif-files like the ASTER data so a similar method described above can be used on this dataset. The different tiles cover an area that is 30 by 20 degrees longitude/latitude. There are no valid data north of 84 degrees north and south of 56 degrees south. The two steps described above have been streamlined in harmonie-40h1 and the main tasks have been gathered in Preparegmted which is called from Preparepgd. What's required from the user is to download (https://topotools.cr.usgs.gov/gmtedviewer/viewer.htm) the GMTED2010 data and locate them in the appropriate location and point the following variable in Envsystem to the location:

   export GMTED2010_INPUT_PATH=/project/hirlam/harmonie/climate/GMTED2010

To use the GMTED2010 data and not GTOPO30 we have to define the input source, once again in ecf/config_exp.h .

   TOPO_SOURCE=gmted2010

The Prepare_gmted script checks for the chosen domain size and selects the necessary tiles and then combines them together into one geotiff file under $CLIMDIR. Small python script tif2bin.py then converts the new geotiff to the binary (dir/hdr) format needed for PGD generation.

On ECMWF.atos the following input files are available under /project/hirlam/harmonie/climate/GMTED2010:

10N000E_20101117_gmted_mea075.tif
+10N030E_20101117_gmted_mea075.tif
+10N030W_20101117_gmted_mea075.tif
+10N060E_20101117_gmted_mea075.tif
+10N060W_20101117_gmted_mea075.tif
+10N090E_20101117_gmted_mea075.tif
+10N090W_20101117_gmted_mea075.tif
+10N120E_20101117_gmted_mea075.tif
+10N120W_20101117_gmted_mea075.tif
+10N150E_20101117_gmted_mea075.tif
+10N150W_20101117_gmted_mea075.tif
+10N180W_20101117_gmted_mea075.tif
+10S000E_20101117_gmted_mea075.tif
+10S030E_20101117_gmted_mea075.tif
+10S030W_20101117_gmted_mea075.tif
+10S060E_20101117_gmted_mea075.tif
+10S060W_20101117_gmted_mea075.tif
+10S090E_20101117_gmted_mea075.tif
+10S090W_20101117_gmted_mea075.tif
+10S120E_20101117_gmted_mea075.tif
+10S120W_20101117_gmted_mea075.tif
+10S150E_20101117_gmted_mea075.tif
+10S150W_20101117_gmted_mea075.tif
+10S180W_20101117_gmted_mea075.tif
+30N000E_20101117_gmted_mea075.tif
+30N030E_20101117_gmted_mea075.tif
+30N030W_20101117_gmted_mea075.tif
+30N060E_20101117_gmted_mea075.tif
+30N060W_20101117_gmted_mea075.tif
+30N090E_20101117_gmted_mea075.tif
+30N090W_20101117_gmted_mea075.tif
+30N120E_20101117_gmted_mea075.tif
+30N120W_20101117_gmted_mea075.tif
+30N150E_20101117_gmted_mea075.tif
+30N150W_20101117_gmted_mea075.tif
+30N180W_20101117_gmted_mea075.tif
+30S000E_20101117_gmted_mea075.tif
+30S030E_20101117_gmted_mea075.tif
+30S030W_20101117_gmted_mea075.tif
+30S060E_20101117_gmted_mea075.tif
+30S060W_20101117_gmted_mea075.tif
+30S090E_20101117_gmted_mea075.tif
+30S090W_20101117_gmted_mea075.tif
+30S120E_20101117_gmted_mea075.tif
+30S120W_20101117_gmted_mea075.tif
+30S150E_20101117_gmted_mea075.tif
+30S150W_20101117_gmted_mea075.tif
+30S180W_20101117_gmted_mea075.tif
+50N000E_20101117_gmted_mea075.tif
+50N030E_20101117_gmted_mea075.tif
+50N030W_20101117_gmted_mea075_new.tif
+50N030W_20101117_gmted_mea075.tif
+50N060E_20101117_gmted_mea075.tif
+50N060W_20101117_gmted_mea075_new.tif
+50N060W_20101117_gmted_mea075.tif
+50N090E_20101117_gmted_mea075.tif
+50N090W_20101117_gmted_mea075.tif
+50N120E_20101117_gmted_mea075.tif
+50N120W_20101117_gmted_mea075.tif
+50N150E_20101117_gmted_mea075.tif
+50N150W_20101117_gmted_mea075.tif
+50N180W_20101117_gmted_mea075.tif
+50S000E_20101117_gmted_mea075.tif
+50S030E_20101117_gmted_mea075.tif
+50S030W_20101117_gmted_mea075.tif
+50S060E_20101117_gmted_mea075.tif
+50S060W_20101117_gmted_mea075.tif
+50S090E_20101117_gmted_mea075.tif
+50S090W_20101117_gmted_mea075.tif
+50S120E_20101117_gmted_mea075.tif
+50S120W_20101117_gmted_mea075.tif
+50S150E_20101117_gmted_mea075.tif
+50S150W_20101117_gmted_mea075.tif
+50S180W_20101117_gmted_mea075.tif
+70N000E_20101117_gmted_mea075.tif
+70N030E_20101117_gmted_mea075.tif
+70N030W_20101117_gmted_mea075_new.tif
+70N030W_20101117_gmted_mea075.tif
+70N060E_20101117_gmted_mea075.tif
+70N060W_20101117_gmted_mea075_new.tif
+70N060W_20101117_gmted_mea075.tif
+70N090E_20101117_gmted_mea075.tif
+70N090W_20101117_gmted_mea075_new.tif
+70N090W_20101117_gmted_mea075.tif
+70N120E_20101117_gmted_mea075.tif
+70N120W_20101117_gmted_mea075.tif
+70N150E_20101117_gmted_mea075.tif
+70N150W_20101117_gmted_mea075.tif
+70N180W_20101117_gmted_mea075.tif
+70S000E_20101117_gmted_mea075.tif
+70S030E_20101117_gmted_mea075.tif
+70S030W_20101117_gmted_mea075.tif
+70S060E_20101117_gmted_mea075.tif
+70S060W_20101117_gmted_mea075.tif
+70S090E_20101117_gmted_mea075.tif
+70S090W_20101117_gmted_mea075.tif
+70S120E_20101117_gmted_mea075.tif
+70S120W_20101117_gmted_mea075.tif
+70S150E_20101117_gmted_mea075.tif
+70S150W_20101117_gmted_mea075.tif
+70S180W_20101117_gmted_mea075.tif

Tests of Aster vs. GTOPO30 Topography

The images below shows the topography of the Burren, a hilly region in the west of Ireland, approx. 30km square, as represented by GTOPO30 (top) and Aster (bottom). The extra detail provided by Aster is apparent. The segments of straight line represent the coastline as plotted by the GrADS "hires" map.

The difference fields of surface winds and sea-level pressure between a Harmonie run using GTOPO30 PGD files and another Harmonie run using PGD files from the Aster topography are shown in the image below. Both runs were at 0.5km resolution over a West of Ireland domain, and the difference fields were taken after a 24hr forecast. The only difference between these two runs was the PGD.lfi and PGD.fa topographic files used as input – or more precisely, between the topographic datasets used to generate those 2 PGD files.

The first point to emphasize about this chart is that the differences are very small: the scale on the right is in units of 0.02hPa, and maximum sea-level pressure difference is only about 0.1hPa in magnitude (though it can be of either sign), and surface wind-speed differences are no larger than $0.4m s^-1$. So refining the PGD topography has a relatively small impact on the overall forecast. The main feature of the sea-level pressure difference field is the wave-train originating in the mountains of Connemara and propagating downstream eastwards. The slight difference in representation of those mountains between GTOPO30 and Aster is enough to generate that weak but surprisingly coherent wave-train.

The topographic input used by the “Aladin” part of Harmonie (from OroMean, NbPeaks, and other files) were unchanged for these runs.

What about the Aladin Topography Files (Oro_Mean, etc.)?

The directory $HM_CLDATA/GTOPT030 contains 9 files, 7 of which are derived in some way from the full GTOPO30 topography data set:

FileFieldUnitNb bits
Oro_MeanMean orography (mean of Hmean)$m$16
SigmaSub-grid std dev of Hmean$m$16
Nb_PeaksNumber of sub-grid peaks8
Hmax-HxH-Hmin_ov4mean of (Hmax-Hmean)(Hmean-Hmin)/4$m^2$32
Dh_over_Dx_Dh_over_Dymean of dHmean/dx x dHmean/dy$m^2 km^-2$32
Dh_over_Dx_squaremean of (dHmean/dx)^2^$m^2 km^-2$32
Dh_over_Dy_squaremean of (dHmean/dy)^2^$m^2 km^-2$32
Water_PercentageLand/Sea mask% water8
UrbanisationFraction of urbanisation% city8

2 of the files (Urbanisation, Water_Percentage) are from a NOAA/Navy Global95 dataset and are not related to GTOPO30 at all.

The other 7 files each contain information derived from 5x5 sub-grid boxes of the main gtopo30.dir. (So each is 25 times smaller than gtopo30.dir, accounting for data-type).

The word "mean" in the table above means "averaged over the GTOPO30 pixels contained in one 2'30" box (usually 5x5 GTOPO30 pixels)".

All these files are read in by ald/c9xx/eincli1.F90 . At run-time, the files are only read during the "Climate" phase of each run, and the information in them ultimately written out to the m01, m02, etc. monthly files.

After that, however, these files have no effect whatsoever on Forecast output.

If the 7 secondary GTOPO30 files above are replaced with equivalent ones generated from Aster data, they are read during the "Climate" phase and embedded into m01, m02, etc., but then forecast runs that use these generate output that is bit-wise identical to that produced by a "control" executable (and "control" m01, etc.) based on GTOPO30. (Originally, I found some very small differences in output between my "Aster" and "GTOPO30" runs, but that must have been due to me changing something too much in my "Aster" executable, which necessarily uses modified eincli1.F90 and einter1.F90 input files, or not using a totally "clean slate" of input files to start with).

So those 9 derived files in $HM_CLDATA/GTOPT030 are ultimately redundant, and there is no point replacing them with equivalent ones based on high-resolution Aster topography.

Comment Laura Rontu 21 July 2013

In my understanding, the 7 secondary files are used to derive the following three fields in m01 etc. (example from gl listing of some m01):

 SURFET.GEOPOTENT> 001:220-00000-105@   10115_00:00+0000 000 Standard deviation of orograph   0.000E+000  195.020E+000    4.812E+003  326.546E+000
+ SURFVAR.GEOP.ANI> 001:221-00000-105@   10115_00:00+0000 000 Anisotropy coeff of topography   0.000E+000  542.720E-003    1.000E+000  313.600E-003
+ SURFVAR.GEOP.DIR> 001:222-00000-105@   10115_00:00+0000 000 Direction of main axis of topo  -1.571E+000   96.202E-003    1.939E+000  661.270E-003

These are used by the ALADIN/ALARO buoyancy wave parametrization for generation and dissipation of subgrid-scale waves due to orography. Such a parametrization is not applied in AROME, thus these fields are not used there and do not have any influence on AROME results. However, these or similar variables can be found also in the PGD file, among other orography-related variables derived from GTOPO30 (another example of gl listing of some PGD.lfi):

 ZS              > 001:008-00000-105@20051219_00:00+0000 000 Oro hgt.     0.000E+000  137.923E+000    1.354E+003  152.975E+000
+ AVG_ZS          > 001:001-00600-105@20051219_00:00+0000 000 Average oro     0.000E+000  137.923E+000    1.436E+003  154.681E+000
+ SIL_ZS          > 001:002-00600-105@20051219_00:00+0000 000 Silhouette oro     0.000E+000  150.633E+000    1.575E+003  168.821E+000
+ SSO_STDEV       > 001:005-00600-105@20051219_00:00+0000 000 Stdv SSO    -0.000E+000   16.335E+000  435.020E+000   24.560E+000
+ MIN_ZS          > 001:003-00600-105@20051219_00:00+0000 000 Min subgrid oro     0.000E+000  119.170E+000    1.250E+003  136.836E+000
+ MAX_ZS          > 001:004-00600-105@20051219_00:00+0000 000 Max subgrid oro     0.000E+000  162.376E+000    1.776E+003  181.778E+000
+ SSO_ANIS        > 001:006-00600-105@20051219_00:00+0000 000 Aniso SSO     0.000E+000  543.880E-003    1.000E+000  194.160E-003
+ SSO_DIR         > 001:007-00600-105@20051219_00:00+0000 000 Direction SSO   -90.000E+000   29.056E+000   90.000E+000   40.999E+000
+ SSO_SLOPE       > 001:008-00600-105@20051219_00:00+0000 000 Slop SSO     0.000E+000   28.708E-003  718.360E-003   41.450E-003
+ HO2IP           > 001:009-00600-105@20051219_00:00+0000 000 h/2 i+     0.000E+000    6.905E+000  274.755E+000   11.246E+000
+ HO2JP           > 001:010-00600-105@20051219_00:00+0000 000 h/2 j+     0.000E+000    7.030E+000  290.501E+000   11.472E+000
+ HO2IM           > 001:011-00600-105@20051219_00:00+0000 000 h/2 i-     0.000E+000    6.964E+000  256.012E+000   11.534E+000
+ HO2JM           > 001:012-00600-105@20051219_00:00+0000 000 h/2 j-     0.000E+000    7.190E+000  352.647E+000   11.734E+000
+ AOSIP           > 001:013-00600-105@20051219_00:00+0000 000 A/S i+     0.000E+000    8.055E-003  548.990E-003   14.087E-003
+ AOSJP           > 001:014-00600-105@20051219_00:00+0000 000 A/S j+     0.000E+000    8.297E-003  461.020E-003   14.306E-003
+ AOSIM           > 001:015-00600-105@20051219_00:00+0000 000 A/S i-     0.000E+000    8.280E-003  521.020E-003   14.863E-003
+ AOSJM           > 001:016-00600-105@20051219_00:00+0000 000 A/S i-     0.000E+000    8.454E-003  471.930E-003   15.079E-003

Presently, derivations are done automatically, so there is nothing to worry for the user from the point of view of technical implementation. However, eventually there are needs for further development and improvements when the high-resolution source data on topography will be used.

Conclusion

In order to replace the (relatively) coarse-resolution GTOPO30 topography with higher-resolution data (e.g., from Aster), it is enough to generate replacements for the gtopo30.hdr and gtopo30.dir files in the $HM_CLDATA/PGD directory, as described in the upper part of this page.

diff --git a/previews/PR1153/ExperimentConfiguration/ModelDomain/index.html b/previews/PR1153/ExperimentConfiguration/ModelDomain/index.html new file mode 100644 index 0000000000..1200a24234 --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/ModelDomain/index.html @@ -0,0 +1,26 @@ + +Domain · Harmonie wiki
GitHub

Model Domain

Introduction

There are four projections available in HARMONIE, polar stereographic, lambert, mercator and rotated mercator. The model itself chooses the best (least distortion) projection among the first three given your domain specifications. The rotated mercator projection is selected through the variable LROTMER. Note that the polar stereographic project is defined at $90^o$ N(S) whereas in GRIB1 it is defined at $60^o$ N(S).

projections

Polar stereographic, Lambert and Mercator projection.

Rotated Mercator

Rotated mercator projection

Model domain settings

For each domain we set variables related to the geometry and the resolution like:

HARMONIE model domains are defined in settings in scr/Harmonie_domains.pm. The following variables related to the geometry and the resolution are required:

  • TSTEP is model timestep in seconds
  • NLON is number of points in $x$-direction.
  • NLAT is number of points in $y$-direction.
  • LONC is the longitude of domain centre in degrees.
  • LATC is the latitude of domain center in degrees.
  • LON0 is the reference longitude of the projection in degrees.
  • LAT0 is the reference latitude of the projection in degrees. If LAT0 is set to 90, the projection is polar stereographic. If LAT0 < 90, the projection is lambert unless LMRT=.TRUE.
  • GSIZE is the distance between each grid point in meters in both $x$- and $y$-direction.
  • EZONE is number of points over extension zone in both $x$- and $y$-direction. Default value 11.
  • LMRT switch for rotated Mercator projection. If LMRT=.TRUE. LAT0 should be zero.

NLON and NLAT should satisfy the equation $5^b * 3^d * 2^e$, where $a$-$e$ are integers $\geq 0$.

The default area is the Denmark domain (DKCOEXP). The following values for C+I zone and truncation are calculated in src/Harmonie_domains.pm from the values above.

  • NDLUXG is number of points in x-direction without extension (E) zone.
  • NDGUXG is number of points in y-direction without extension (E) zone.
  • NMSMAX_LINE is truncation order in longitude. By default (NLON-2)/2.
  • NSMAX_LINE is truncation order in latitude. By default (NLAT-2)/2.
  • NMSMAX_QUAD is truncation order in longitude. By default (NLON-2)/3. It is used to create filtered orography with lower resolution.
  • NSMAX_QUAD is truncation order in latitude. By default (NLAT-2)/3. It is used to create filtered orography with lower resolution.

cie domain

Domain creation tool

To help with the design of a new domain, there is an interactive tool that lets you experiment with the grid parameters described above, and visualize the resulting domain immediately on a map, see figure below.

At present, it only works for Lambert and polar stereographic projection, not rotated mercator.

Creating a new domain

If you are happy with your new domain created with the help of the domain creation tool you can add it to scr/Harmonie_domains.pm for your experiment, my_exp (assuming you have set up the experiment):

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie co scr/Harmonie_domains.pm
+#
+# add domain information for new domain called MYNEWDOM in this file
+#
+vi scr/Harmonie_domains.pm
+#
+# set DOMAIN=MYNEWDOM in the experiment config file
+#
+vi ecf/config_exp.h

You can now start a new experiment with a newly defined domain called MYNEWDOM.

Create a test domain with gl

Before you go through the full climate generation process you can generate a test domain using gl. Define your domain in the namelist like:

&NAMINTERP
+OUTGEO%NLON = 300 ,
+OUTGEO%NLAT = 300,
+OUTGEO%PROJECTION = 3,
+OUTGEO%WEST = 17.0,
+OUTGEO%SOUTH = 58.0,
+OUTGEO%DLON = 2500.0
+OUTGEO%DLAT = 2500.0
+OUTGEO%PROJLAT = 60.0
+OUTGEO%PROJLAT2 = 60.0
+OUTGEO%PROJLON = 0.0,
+/

Running gl using this namelist by

gl -n namelist_file

will create an GRIB file with a constant orography which you can use for plotting.

diff --git a/previews/PR1153/ExperimentConfiguration/Namelists/index.html b/previews/PR1153/ExperimentConfiguration/Namelists/index.html new file mode 100644 index 0000000000..a185cdb6bf --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/Namelists/index.html @@ -0,0 +1,295 @@ + +Namelist · Harmonie wiki
GitHub

Controlling the namelists in HARMONIE

Introduction

IFS is largely driven by namelists and has thousands of options. For each configuration a number of namelists controlling different parts are read. To make the maintenance of the namelists manageable and to assure consistency in terms on e.g. name conventions for fields, packing accuracy, physics settings and parallel options all namelists are generated as they are needed during the run. All the basic settings are defined in a perl dictionary nam/harmonie_namelists.pm for IFS and nam/surfex_namelists.pm and nam/surfex_selected_output.pm for SURFEX. In future versions the commented namelists will be included and maintained as part of the code. The IFS dictionary is structured in several sections:

harmone_namelists.pm

  • Global settings

  • Technical settings

    • Host specific settings
    • MPP options
    • File settings

  • DYNAMICS SETTINGS

    • Main dynamics switches
    • Non-hydrostatic settings
    • Vertical finite element
    • DFI

  • Main physics options. NB! These may contain switches for dynamics as well

    • ALADIN
    • AROME
    • EDMFM switches, to be applied after AROME
    • Alaro
    • Old surface
    • SURFEX
    • DDH

  • E927 Interpolation settings

    • Main fullpos settings
    • E927
    • E927 nh
    • SURFEX initial file generation
    • Aladin e927
    • ALARO e927
    • Arome e927

  • General postprocessing switches

    • Default fullpos settings
    • NH postprocessing
    • Switches for postprocessing with surfex
    • Special cases for arome

  • Assimilation

    • Canari
      • Arome canari
    • Varbc_rad
    • Varbc_coldstart
    • Screening
      • Arome screening
      • Alaro screening
    • Minimization
      • Alaro minimization
    • 4DVAR
      • 4DVAR minimization
      • 4DVAR screening
      • 4DVAR trajectory

  • Climate generation

    • Climate generations (e923)

  • Misc

    • General namelist settings for Tangent-Linear and Adjoint tests
    • Extra Adjoint test options
    • Oulan
    • Bator

The final namelists are build through the rules given in scr/Get_namelist and are generated by nam/gen_namelists.pl. Note that in several cases environment variables are still parsed in the scripts.

surfex_namelists.pm

All possible SURFEX namelist setting are documented at the SURFEX web site. Use the search text area in the upper right corner to search for a specific namelist or namelist option. Please, keep in mind that the SURFEX web site documents the latest SURFEX version, i.e. SURFEXv8, while in cy40h SURFEXv7.3 is used. Therefore, some of the settings may be different or not available.

PGD

PGD represents in general the preparation of physiography data. The default PGD settings are listed here. Some modifications can be done for specific model configurations and will be specified as e.g. alaro_pgd or arome_pgd.

# 2 layer ISBA scheme
+%isba_2L=(
+ NAM_ISBA=>{
+  CISBA          => '"2-L",',
+  NGROUND_LAYER  => '2,',
+ },
+);
+
+# 3 layer ISBA scheme
+%isba_3L=(
+ NAM_ISBA=>{
+  CISBA          => '"3-L",',
+  NGROUND_LAYER  => '3,',
+ },
+);

The section used here is decided by setting CISBA="3-L" (default) in config_exp.h.

%isba_pgd=(
+ NAM_ISBA=>{
+   YCLAY         => 'YCLAY,',
+   YCLAYFILETYPE => '"DIRECT",' ,
+   YSAND         => 'YSAND,',
+   YSANDFILETYPE => '"DIRECT",'
+ },
+);

The clay/sand used is decided by setting SOIL_TEXTURE_VERSION=FAO (default) in config_exp.h. FAO corresponds to 10 km resolution clay/sand according to SURFEX Soil texture description. The 1 km HWSD_v2 is not used by default since is shows strange vales over Scandinavia.

%pgd=(
+ NAM_IO_OFFLINE=>{
+  CSURF_FILETYPE => 'CSURF_FILETYPE,',
+   CPGDFILE      => 'CPGDFILE,',
+ },
+ NAM_PGD_GRID=>{
+   CGRID         => '"CONF PROJ",',
+ },
+ NAM_CONF_PROJ=>{
+   XLAT0         => $ENV{LAT0},
+   XLON0         => $ENV{LON0},
+   XRPK          => $ENV{SINLAT0},
+   XBETA         => 0.0,
+ },
+ NAM_CONF_PROJ_GRID=>{
+   XLATCEN       => $ENV{LATC},
+   XLONCEN       => $ENV{LONC},
+   NIMAX         => 'BNIMAX,',
+   NJMAX         => 'BNJMAX,',
+   XDX           => 'BXDX,', 
+   XDY           => 'BXDY,',
+ },
+ NAM_COVER=> {
+   YCOVER        => 'YCOVER,',
+   YCOVERFILETYPE=> '"DIRECT",',
+ },
+ NAM_ZS=>{
+   YZS           => 'YTOPO,',
+   YZSFILETYPE   => '"DIRECT",',
+ },
+ NAM_SEABATHY=>{
+   XUNIF_SEABATHY=>'0.,', 
+ },
+ NAM_PGD_SCHEMES=>{
+    CNATURE => '"ISBA ",',
+    CSEA    => '"SEAFLX",',
+    CWATER  => '"WATFLX",',
+    CTOWN   => '"TEB ",',
+ },
+);

Most options here are specified in different scripts and are normally not supposed to be modified. Exceptions are e.g.

  • ECOCLIMAP version used (YCOVER) is decided by setting ECOCLIMAP_VERSION=2.2 (default) in config_exp.h. Available ECOCLIMAP versions provided via the SURFEX team are documented in SURFEX Land use description. Some of these can be available on your system, see your $HM_CLDATA setting.
  • Orography version used (YTOPO) is decided by setting TOPO_SOURCE=gmted2010 (default) in config_exp.h.

PREP

PREP represents in general initialisation of prognostic variables. The default PREP settings are listed here. Some modifications can be done for specific model configurations and will be specified as e.g. alaro_prep or arome_prep.

%sice_prep=(
+ NAM_SEAFLUXn=>{
+    LHANDLE_SIC            =>'.TRUE.,',
+    LSIC_FROM_FILE         =>'.TRUE.,',
+    CSEA_ICE               =>'"SICE",',
+    NICE_LAYER             =>'4,',
+ },
+ NAM_PREP_SEAFLUX=>{
+    CFILE_SIC           =>'"CFILE_SIC",',
+    CTYPE_SIC           =>'"GRIB  "',
+ },
+ NAM_SIMPLE_ICE=>{
+    XICE_THICKNESS      =>'.75,',
+    LICE_HAS_SNOW       =>'.FALSE.,',
+    CICE_SNOW           =>'"S-D",',
+    NICE_SNOW_NLAYERS   =>'4,',
+    XICE_SNOW_HEIGHT    =>'.3,',
+    LSIC_DRIVEN_THICKNESS=>'.FALSE.',
+    XSIC_DRIVEN_MAX_THICKNESS=>'1.',
+ },
+ NAM_PREP_SIMPLE_ICE=>{
+    LINIT_FROM_SST => '.TRUE.,',
+ },
+);

  • CSEA_ICE : selects preferred sea ice scheme.

    • NONE – use default SURFEX ICEFLUX diagnostic scheme
    • SICE – use SICE

  • LHANDLE_SIC : activates ice fraction handling

  • LSIC_FROM_FILE : ice fraction data from an external source

    • .TRUE. – use the externally provided ice fraction data
    • .FALSE. – assume that ice fraction data is encoded within SST field

  • NICE_LAYER : number of ice layers (2 < NICE_LAYER < 100)

  • CFILE_SIC : external data file that stores ice fraction data

  • CTYPE_SIC : type of external data source

  • XICE_THICKNESS : uniform thickness of the ice field

  • LICE_HAS_SNOW : snow upon the ice

    • .TRUE. – preform snow-enabled run
    • .FALSE. – use bare ice configuration

  • CICE_SNOW : snow scheme that used to parametrize snow upon the ice

    • S-D – test heat diffusion scheme
      • NICE_SNOW_NLAYERS : number of snow layers for S-D snow scheme
      • XICE_SNOW_HEIGHT : thickness of snow pack for S-D snow scheme
    • 3-L – use 3-L explicit snow scheme

  • LSIC_DRIVEN_THICKNESS : use ice fraction to estimate ice thickness. Untested, should be set to .FALSE.

  • XSIC_DRIVEN_MAX_THICKNESS : unused if LSIC_DRIVEN_THICKNESS == .FALSE.

  • LINIT_FROM_SST : use composite SST/SIST field to initialize sea ice temperatures

This part represents settings connected to the Simple Sea-ice Scheme (SICE) by Yurii Batrak. Please note that SICE is not yet an official contribution to SURFEX and therefore you will not find any documentation of SICE via the SURFEX web site. 

%isba_prep=(
+ NAM_PREP_ISBA=>{
+   LISBA_CANOPY  => '.TRUE.,',
+   LEXTRAP_TG    => '.TRUE.,',
+   LEXTRAP_WG    => '.TRUE.,',
+   LEXTRAP_WGI   => '.TRUE.,',
+   LEXTRAP_SN    => '.TRUE.,',
+   NDIM_EXTRAP   => '20,',
+ },
+ NAM_PREP_ISBA_SNOW=>{
+   LSWEMAX       => '.TRUE.,',
+ },
+ NAM_DIAG_ISBAn=>{
+   LPATCH_BUDGET=>'.TRUE.,',
+ },
+);
  • LISBA_CANOPY : activates surface boundary multi layer scheme over vegetation
  • LEXTRAP_XX : extrapolate XX points where LSM < 0.5 (buffer only)
  • NDIM_EXTRAP : Size of search domain for extrapolation (not in official SURFEX)
  • LSWEMAX : logical switch to set an upper limit on initial snow water equivalent (set by XSWEMAX (=500 kg/m2 default) ).
%fullpos_prep=(
+ NAM_FILE_NAMES=>{
+   HPGDFILE      =>'"PGDFILE",',
+   CINIFILE      =>'"SURFXINI",',
+ },
+);
+
+%offline_prep=(
+ NAM_IO_OFFLINE=>{
+   CSURF_FILETYPE       => '"LFI   ",',
+   CPREPFILE            => '"SURFXINI",',
+   CPGDFILE             => '"PGD",',
+ },
+ NAM_PREP_SURF_ATM=>{
+   CFILEPGD      =>'"PGD_host",',
+   CFILEPGDTYPE  =>'"LFI",',
+   CFILE      =>'"INFILE",',
+   CFILETYPE  =>'CFILETYPE,',
+   NYEAR      =>'NYEAR,',
+   NMONTH     =>'NMONTH,',
+   NDAY       =>'NDAY,',
+   XTIME      =>'XTIME,',
+ },
+);

Most options here are specified in different scripts and are normally not supposed to be modified.

%arome_prep=(
+ NAM_PREP_SEAFLUX=>{
+   LSEA_SBL     => '.FALSE.,',
+ },
+ NAM_SEAFLUXn=>{
+    CSEA_ICE               =>'"NONE",',
+    LHANDLE_SIC            =>'.FALSE.,',
+ },
+);

Please note these special settings for the AROME model configuration.

FORECAST

FORECAST represents in general the namelist settings used during Forecast. The default FORECAST settings are listed here. Some modifications can be done for specific model configurations and will be specified as e.g. alaro_forecast or arome_forecast.

%sice_forecast=(
+ NAM_SEAFLUXn=>{
+    LHANDLE_SIC            =>'.TRUE.,',
+    LSIC_FROM_FILE         =>'.TRUE.,',
+    CSEA_ICE               =>'"SICE",',
+    NICE_LAYER             =>'4,',
+ },
+ NAM_SIMPLE_ICE=>{
+    XICE_THICKNESS            => '.75,',
+    LICE_HAS_SNOW             => '.FALSE.,',
+    CICE_SNOW                 => '"S-D",',
+    NICE_SNOW_NLAYERS         => '4,',
+    XICE_SNOW_HEIGHT          => '.3,',
+    LSIC_DRIVEN_THICKNESS     => '.FALSE.',
+    XSIC_DRIVEN_MAX_THICKNESS => '1.',
+ },
+ NAM_DIAG_SURFn=>{
+   LCOEF             => '.TRUE.,',
+   LSURF_VARS        => '.TRUE.,',
+ },
+);

This part represents settings connected to the Simple Sea-ice Scheme (SICE) by Yurii Batrak. Please note that SICE is not yet an official contribution to SURFEX and therefore you will not find any documentation of SICE via the SURFEX web site.

%isba_forecast=(
+ NAM_ISBAn=>{
+   CROUGH        => '"NONE",',
+ },
+ NAM_DIAG_ISBAn=>{
+   LPGD     => '.TRUE.,',
+   LSURF_MISC_BUDGET=> '.TRUE.,',
+ },
+);
+
+%forecast=(
+ NAM_IO_OFFLINE=>{
+  'CSURF_FILETYPE'      => '"LFI    ",',
+  'CFORCING_FILETYPE'   => '"ASCII",',
+  'CTIMESERIES_FILETYPE'=> '"LFI",',
+  'XTSTEP_SURF'         => $ENV{TSTEP}.",",
+  'XTSTEP_OUTPUT'       => '3600.,',
+  'LRESTART'            => '.TRUE.,',
+  'CPREPFILE'           => '"PREP",',
+  'CPGDFILE'            => '"PGD",',
+ },
+ NAM_SURF_ATM=>{
+   XRIMAX=>'0.0,',
+ },
+ NAM_DIAG_SURFn=>{
+   LSURF_BUDGET      => '.TRUE.,',
+   N2M      =>'2,',
+ },
+ NAM_DIAG_SURF_ATMn=>{
+   LT2MMW            => '.TRUE.,',
+ },
+ NAM_DIAG_ISBAn=>{
+   LPATCH_BUDGET  => '.TRUE.,',
+ },
+ NAM_SSOn=>{
+   CROUGH   => "'".$ENV{CROUGH}."'",
+   XFRACZ0  => '15.,',
+ },
+ NAM_SEAFLUXn=>{
+  CSEA_FLUX => '"ECUME",',
+  LPWG      => '.FALSE.,',
+  LPRECIP   => '.FALSE.,',
+  LPWEBB    => '.FALSE.,',
+  CSEA_ICE    =>'"NONE",',
+  LHANDLE_SIC =>'.FALSE.,',
+  LPERTFLUX   => 'LPERTSURF,',
+ },
+ NAM_ISBAn=>{
+  LCANOPY_DRAG => '.TRUE.,',
+  XCDRAG       => '0.01,',
+  LPERTSURF    => 'LPERTSURF,',
+ },
+);
  • XRIMAX: limitation of Richardson number in drag computation (=0 default).
  • N2M : flag to compute surface boundary layer characteristics (=0 default). N2M=2 computes temperature at 2 m, specific humidity at 2 m, relative humidity, zonal and meridian wind at 10 m, and Richardson number. 2m and 10m quantities are calculated interpolating between atmospheric forcing variables and surface temperature and humidity. Please note that if the surface boundary multi layer scheme is activated over any tile (as with LISBA_CANOPY=T over land) it overrides the diagnostic N2M method.
  • LT2MMW : Alternative weighting of grid average T2M giving more weight to the land tile (=FALSE default).
  • CROUGH: type of orographic roughness length. CROUGH is decided by setting CROUGH="NONE" in config_exp.h which means that no orographic treatment is applied.
  • XFRACZ0 : Z0=Min(Z0, Href/XFRACZ0). Not applied here since CROUGH="NONE".
  • LPERTFLUX: multiplicative perturbation of Ecume fluxes for ensemble forecasting. In HARMONIE this is set in a number of scripts under scr.
  • LPERTSURF: if .True. modification of surface fluxes for ensemble forecasting. In HARMONIE this is set in a number of scripts under scr.
  • LCANOPY_DRAG: drag activated in SBL scheme within the canopy.
  • XCDRAG: drag coefficient in canopy (=0.15 default in SURFEX).

ASSIMILATION

ASSIMILATION represents in general the surface assimilation namelist settings used for CANARI and SURFEX. The default ASSIMILATION settings are listed here. The SURFEX assimilation method used (OI or EKF) is decided by setting ANASURF=CANARI_OI_MAIN in config_exp.h. OI is default and EKF is still experimental.

%sice_assim=(
+ NAM_SEAFLUXn=>{
+    LHANDLE_SIC            =>'.TRUE.,',
+    LSIC_FROM_FILE         =>'.TRUE.,',
+    CSEA_ICE               =>'"SICE",',
+    NICE_LAYER             =>'4,',
+ },
+ NAM_SIMPLE_ICE=>{
+   LICE_HAS_SNOW       =>'.FALSE.,',
+   XICE_THICKNESS      =>'.75,',
+   CICE_SNOW           =>'"S-D",',
+   NICE_SNOW_NLAYERS   =>'4,',
+   XICE_SNOW_HEIGHT    =>'.3,',
+   LSIC_DRIVEN_THICKNESS      =>'.FALSE.',
+   XSIC_DRIVEN_MAX_THICKNESS  =>'1.',
+ 
+},
+ NAM_PREP_SEAFLUX=>{
+    CFILE_SIC          => 'CFILE_SIC,',
+    CTYPE_SIC          => '"GRIB  "',
+    LSEA_SBL           => '.FALSE.',
+ },
+ NAM_PREP_SIMPLE_ICE=>{
+    LINIT_FROM_SST             =>'.TRUE.,',
+    LPREP_ONLY_NEW_ICE         =>'.TRUE.,',
+    LEXTRAPOLATE_FROM_FORECAST =>'.TRUE.,',
+    CFORECAST_GRIB             =>'CFORECAST_GRIB',
+ },
+);
  • LPREP_ONLY_NEW_ICE : perform prep in current grid cell only if ice state is undefined
  • LEXTRAPOLATE_FROM_FORECAST : use previous forecast to fill areas with new ice. If LINIT_FROM_SST == .TRUE. .AND. LEXTRAPOLATE_FROM_FORECAST == .TRUE. option LINIT_FROM_SST is forced to .FALSE.
  • CFORECAST_GRIB : previous forecast in GRIB format

This part represents settings connected to the Simple Sea-ice Scheme (SICE) by Yurii Batrak. Please note that SICE is not yet an official contribution to SURFEX and therefore you will not find any documentation of SICE via the SURFEX web site. 

%assim_surfex=(
+ NAM_NACVEG=>{
+   NECHGU      => ''.$ENV{FCINT}.',',
+   RCLIMCA     => '0.,',
+   RCLISST     => '0.05,',
+   SIGH2MO     => '0.10,',
+   SIGT2MO     => '1.0,',
+   LOBS2M      => '.TRUE.,',
+   LOBSWG      => '.FALSE.,',
+ },
+ NAM_IO_OFFLINE=>{
+   CSURF_FILETYPE       => 'CSURF_FILETYPE,',
+   CTIMESERIES_FILETYPE => '"LFI ",',
+   CFORCING_FILETYPE    => '"ASCII",',
+   LRESTART             => '.TRUE.,',
+   XTSTEP_SURF          => '3600.,',
+   XTSTEP_OUTPUT        => '3600.,',
+ },
+ NAM_ASSIM=>{
+   LASSIM              => '.TRUE.,',
+   LEXTRAP_WATER       => '.TRUE.,',
+   LEXTRAP_SEA         => '.FALSE.,',
+   LEXTRAP_NATURE      => '.FALSE.',
+   LREAD_SST_FROM_FILE => '.TRUE.,',
+   LWATERTG2           => '.TRUE.,',
+   LAESNM              => 'LAESNM,',
+   LECSST              => 'LECSST,',
+   LAROME              => 'LAROME,',
+   NPRINTLEV           => '1,',
+ },
+);
+
+%oi_main=(
+ NAM_ASSIM=>{
+   CASSIM_ISBA         => '"OI",',
+ },
+);

surfex_selected_output.pm

The output from SURFEX to the .sfx fa-files (e.g. ICMSHHARM+0002.sfx) is in general decided by SURFEX NAM_DIAG namelist settings. These settings activate or deactivate groups of variables in output files. When one or more such groups are activated it is possible to limit the output to a specific list of variables by the use of the LSELECT/CSELECT options in SURFEX. This way of specifying output from SURFEX is the default way in cy40h. The setting is SURFEX_LSELECT="yes" in config_exp.h. When SURFEX_LSELECT="yes" the namelist nam/surfex_selected_output.pm is used to specify the output variables. The style of surfex_selected_output.pm is

%surfex_output=(
+ NAM_WRITE_DIAG_SURFn=>{
+   NSTEP_DUMP_STATE => 'NSTEP_DUMP_STATE,',
+   LSELECT     => '.TRUE.,',
+   CSELECT     => '
+"Z0",
+"RNC",
+"HC",
+
+
+"T2M_P",
+"T2MMIN_P",
+"T2MMAX_P",'
+ },);

Please note the " ' " character at the end of the last variable line "T2MMAX_P",'. Don't miss it, it is very important! The naming convention for variables in this file follows the SURFEX naming convention which is not exactly how they appear in fa-files. A fa-file output example from a .sfx file may look:

SFX.SST         > 001:011-  000-102@20160301_15:00+002h00m tri:000 000 SST
+SFX.TS_WATER    > 001:011-  770-105@20160301_15:00+002h00m tri:000 000 TS_WATER
+X001TG1         >                   20160301_15:00+002h00m         000
+X001TG2         >                   20160301_15:00+002h00m         000
+X001WG1         >                   20160301_15:00+002h00m         000
+X001WG2         >                   20160301_15:00+002h00m         000
+SFX.TROAD1      >                   20160301_15:00+002h00m         000
+SFX.WS_ROAD     > 001:024-  950-105@20160301_15:00+002h00m tri:000 000 WS_ROAD

You get the corresponding SURFEX names by removing "SFX." or "X001" at the beginning of these fa-names.

The .sfx files are used as first guess for next forecast. However, the first guess needs ALL SURFEX variables and not only a subset as defined by LSELECT/CSELECT. Therefore, a full .sfx file (e.g. ICMSHFULL+0003.sfx) is created for each assimilation cycle hour in addition to the corresponding limited file ICMSHHARM+0003.sfx. The output frequency of full files is defined by SURFEX_DUMP_STATE_STEPS="" in config_exp.h.

The content of the FULL-files can be used to identify additional variables to add to surfex_selected_output.pm.

Change your namelists

There are several ways of changing namelists generated from the dictionary.

  • Copy the harmonie_namelist.pm file to your local experiment directory and change the right section like for any source or script modification.

  • If you feel uncertain where to change in the dictionary you can copy the actual namelist used in your run. Every namelist used is listed in the logfile so copy it from there and put it under the nam directory in your local experiment. Make sure you give it a unique name. You must then also change the script(s) using this namelist like in the Forecast script scr/Forecast.

#  Get namelist name
+#NAMELIST=$WRK/$WDIR/namelist_forecast
+#Get_namelist forecast $NAMELIST
+NAMELIST=$HM_LIB/nam/namelist_forecast_with_a_unique_name
+

For namelists not present in the dictionary you just copy them to you local nam directory.

There is also a description on how to generate new namelist dictionaries here.

diff --git a/previews/PR1153/ExperimentConfiguration/PlatformConfiguration/index.html b/previews/PR1153/ExperimentConfiguration/PlatformConfiguration/index.html new file mode 100644 index 0000000000..baea9d1d5f --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/PlatformConfiguration/index.html @@ -0,0 +1,15 @@ + +Platform · Harmonie wiki
GitHub

Platform Configuration

Overview

This wiki page outlines the configuration files required by HARMONIE for successful compilation and running of the system.

Basic requirements

All experiments require a valid host to "setup" an experiment using the Harmonie script. Recall from the quick start instructions that in order to setup a new experiment on your platform, called YOURHOST, using HARMONIE downloaded to PATH_TO_HARMONIE one must issue the following command:

cd hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie setup -r PATH_TO_HARMONIE -h YOURHOST

hm_home/my_exp contains:

Env_submit -> config-sh/submit.YOURHOST           ## YOURHOST platform specific settings
+Env_system -> config-sh/config.YOURHOST           ## YOURHOST task submission settings
+./config-sh/hm_rev                                ## contains PATH_TO_HARMONIE
+./config-sh/Main                                  ## The script used to run HARMONIE
+./config-sh/submit.YOURHOST                       ## YOURHOST platform specific settings
+./config-sh/config.YOURHOST                       ## YOURHOST task submission settings
+./suites/harmonie.pm                              ## perl module to define ensemble settings
+./ecf/config_exp.h                                ## your experiment definition (scientific type options)
+./scr/include.ass                                 ## assimilation specific settings

But, what if your host configuration is not available in the HARMONIE system? Host specific configuration files in PATH_TO_HARMONIE/config-sh must be available for your host and configuration files for the compilation of the code must be available. This documentation attempts to describe what is required.

Host config files

Env_system -> config-sh/config.YOURHOST

The config.YOURHOST file defines host specific variables such as some input directory locations. If your YOURHOST is not already included in HARMONIE it may be work looking at config.* files in config-sh/ to see what other people have done. The table below outlines variables set in config-sh/config-sh.YOURHOST and what the variables do:

Variable nameDescription
COMPCENTREcontrols special ECMWF solutions (such as MARS) where required. Set to LOCAL if you are unsure
HARMONIE_CONFIGdefines the config file used by Makeup compilation
MAKEUP_BUILD_DIRlocation of where Makeup compiles the HARMONIE code
MAKE_OWN_PRECOMPILEDyes=>install pre-compiled code in $PRECOMPILED
PRECOMPILEDlocation of (optional) pre-compiled HARMONIE code
E923_DATA_PATHlocation of input data for E923, climate generation
PGD_DATA_PATHlocation of input data for PGD, surfex climate generation
ECOSG_DATA_PATHlocation of input data for ECOCLIMAP2G
GMTED2010_DATA_PATHlocation of HRES DEM
SOILGRID_DATA_PATHlocation of SOILGRID data
HM_SAT_CONSTlocation of constants for satellite assimilation
RTTOV_COEFDIRlocation of RTTOV coefficients
HM_DATAlocation of top working directory for the experiment
HM_LIBlocation of src/scripts and compiled code
TASK_LIMITMaximum number of jobs submitted by ECFLOW
RSYNC_EXCLUDEused to exclude .git* sub-directories from copy of source code for compilation
DR_HOOK_IGNORE_SIGNALSenvironment variable used by Dr Hook to ignore certain "signals"
HOST0define primary host name
HOSTNdefine other host name(s)
HOST_INSTALL0=> install on HOST0, 0:...:N => install on HOST0,...,HOSTN
MAKEmake command may need to be explicity defined. Set to make for most platforms
MKDIRmkdir command (default: mkdir -p)
JOBOUTDIRwhere ECFLOW writes its log files
ECCODES_DEFINITION_PATHlocation of local ecCodes definition files
BUFR_TABLESlocation of local BUFR tables

Env_submit -> config-sh/submit.YOURHOST

The Env_submit file uses perl to tell the HARMONIE scheduler how to execute programs - which programs should be run on multiple processors and define batch submissions if required.

perldescription
%backg_jobdefines variables for jobs run in the background on HOST0
%scalar_jobdefines variables for single processor batch jobs
%par_jobdefines variables for multi-processor batch jobs
@backg_listlist of tasks to be submitted as a background job
@scalar_listlist of tasks to be submitted as a scalar job
@par_listlist of tasks to be submitted as parallel job
default"wildcard" task name to defined default type of job for unlisted tasks

Host summary

YOURHOSTHost typebatchContactNotes
AEMET.cirrus.gnu
AEMET.nimbus.ifort.mpi
biSMHI
centos8
cirrus
debian11
ecgbswitched off
ecgb-ccaECMWF HPC with MPI dual hostslurm/PBSswitched off
ECMWF.atosECMWF Atos HPC with MPIslurm
fedora33
fedora34
KNMI.bullx_b720KNMI Atos HPC with MPIslurmBert van Ulft
LinuxPCGeneral Linux PC no MPInone
LinuxPC-MPIGeneral Linux PC with MPInone
LinuxPC-MPI-KNMIKNMI Linux workstation (Fedora)none
LinuxPC-MPI-ubuntuUbuntu Linux PC with MPInone
LinuxPC-serial
METIE.LinuxPCMETIE CentOS 6 PC with MPInoneEoin Whelan
METIE.LinuxPC8
METIE.LinuxRH7gnuMETIE Redhat 7 server with MPInoneEoin Whelan
METIE.LinuxRH7gnu-dev
METIE.reaserve8
METIE.reaserve8musc
nebula
nebula-gnu
opensuse
SMHI.Linda4SMHI
SMHI.Linda5SMHI
stratus
teho
ubuntu18
ubuntu20
ubuntu20_nompi
ubuntu2204.GNUpodman containernoneEoin Whelancontainer
ubuntu2304.GNUpodman containernoneEoin Whelancontainer
ubuntu2310.GNUpodman containernoneEoin Whelancontainer
ubuntu2404.GNUpodman containernoneEoin Whelancontainer
ubuntu2410.GNUpodman containernoneEoin Whelancontainer
voima

Compilation config files

Makeup

config files required for compilation of code using Makeup ...

More information on Makeup is available here: Build with Makeup

Obsmon

For config files required for compilation of obsmon check util/obsmon/config

diff --git a/previews/PR1153/ExperimentConfiguration/UpdateNamelists/index.html b/previews/PR1153/ExperimentConfiguration/UpdateNamelists/index.html new file mode 100644 index 0000000000..e628f35afd --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/UpdateNamelists/index.html @@ -0,0 +1,6 @@ + +- · Harmonie wiki
GitHub
diff --git a/previews/PR1153/ExperimentConfiguration/UseofObservation/index.html b/previews/PR1153/ExperimentConfiguration/UseofObservation/index.html new file mode 100644 index 0000000000..63de0c3ee0 --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/UseofObservation/index.html @@ -0,0 +1,22 @@ + +Observations · Harmonie wiki
GitHub

Use of Observation

Background Information

Observation type

The observation types used by Harmonie (upper-air) data assimilation are defined in scr/include.ass.

SYNOP

By default all SYNOP observation types (including SHIP) are used. 

export SYNOP_OBS=1             # All synop

To blacklist SYNOP observations add blacklisted "ODB observation type/ASCII type/ODB code type/ODB variable number/station identifier/date to blacklist from" to nam/LISTE_NOIRE_DIAP. For example to blacklist 10m winds from Valentia Automatic SYNOP (03953) from the 10th of November 2012 enter the following line to LISTE_NOIRE_DIAP:

 1 SYNOP       14  41 03953    10112012

(Note: please don't add Valentia to your blacklist - the observations from there are pretty good!)

For further information on ODB observation types, code types, variable numbers etc see the ECMWF ODB governance page here: http://apps.ecmwf.int/odbgov/obstype/

SHIP

See information provided above on SYNOP observations.

BUOY

By default all BUOY observation types are used. 

export BUOY_OBS=1              # Buoy

To blacklist BUOY observations add blacklisted "ODB observation type/ASCII type/ODB code type/ODB variable number/station identifier/date to blacklist from" to nam/LISTE_NOIRE_DIAP. For example to blacklist surface temperatures from BUOY M5 (62094) from the 10th of November 2012 enter the following line to LISTE_NOIRE_DIAP:

 4 BUOY        165  11 62094    10112012

(Note: please don't add M4 to your blacklist - the observations from there are pretty good too!)

For further information on ODB observation types, code types, variable numbers etc see the ECMWF ODB governance page here: http://apps.ecmwf.int/odbgov/obstype/

AIRCRAFT

By default all AIRCRAFT observation types (including AMDAR, AIREP, ACARS) are used. 

export AIRCRAFT_OBS=1          # AMDAR, AIREP, ACARS

Below are lines added by Xiaohua to the DMI dka37 LISTE_NOIRE_DIAP file to exclude problematic aircraft observations:

2 AMDAR 144 2 EU0028 08292013
+2 AMDAR 144 2 EU0092 01042013
+2 AMDAR 144 2 EU0079 01052013
+2 AMDAR 144 2 EU0097 01052013
+2 AMDAR 144 2 EU0107 01052013
+2 AMDAR 144 2 EU0033 01062013
+2 AMDAR 144 2 EU0118 01062013
+2 AMDAR 144 2 EU0112 07052013
+2 AMDAR 144 2 EU1110 08122013
+2 AMDAR 144 2 EU0074 08122013

TEMP

By default all TEMP observation types are used. 

export TEMP_OBS=1              # TEMP, TEMPSHIP

PILOT

By default all PILOT observation types are used. 

export PILOT_OBS=1             # Pilot, Europrofiler

AMSUA

By default all AMSUA observation types are not used. 

export AMSUA_OBS=0             # AMSU-A

To use locally received AMSUA data provided by EUMETCast set ATOVS_SOURCE to local in scr/include.ass:

export ATOVS_SOURCE=mars       # local: EUMETCast; 
+                               # mars: data from MARS
+                               # hirlam: hirlam radiance template

AMV (aka SATOB, GEOWIND)

For AMVs there is a HOW-TO page.

Other observation types ...

More documentation to follow ...

export AMSUB_OBS=0             # AMSU-B, MHS
+export IASI_OBS=0              # IASI  
+export PAOB_OBS=0              # PAOB not defined everywhere
+export SCATT_OBS=0             # Scatterometer data not defined everywhere
+export LIMB_OBS=0              # LIMB observations, GPS Radio Occultations
+export RADAR_OBS=0             # Radar
diff --git a/previews/PR1153/ExperimentConfiguration/VerticalGrid/index.html b/previews/PR1153/ExperimentConfiguration/VerticalGrid/index.html new file mode 100644 index 0000000000..cdeca32aa2 --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/VerticalGrid/index.html @@ -0,0 +1,6 @@ + +Vertical Grid · Harmonie wiki
GitHub

HARMONIE Vertical Model Level Definitions

HARMONIE vertical coordinate

HARMONIE model, similar to that of HIRLAM, is constructed for a general pressure based and terrain following vertical coordinate $\eta(p,p_s)$, where

\[\eta(0,P_s) = 0\]

and

\[\eta(p_s,p_s) = 1\]

The formulation corresponds to the ECMWF hybrid system. The model is formulated for a spherical coordinate system ($\lambda$, $\theta$), but in the code two metric coefficients $(h_x,h_y)$ have been introduced. This is done to prepare the model for any orthogonal coordinate system or map projection with axes (x,y).

To represent the vertical variation of the dependent variables (U, V, T and Q), the atmosphere is divided into "nlev" layers. These layers are defined by the pressures at the interfaces between them (the `half-levels'). From the general expression

\[p_{k+1/2} = A_{k+1/2} (n) + B_{k+1/2}(n) * p_s(x,y)\]

for $k=0,1,...,nlev$

the vertical surfaces for half-levels are defined. Pure pressure surfaces are obtained for $B=0$ and pure $\sigma$ surfaces for $A=0$. `full-level' pressure associated with each model level (middle of two half layers) is then determined accordingly.

Definition of model levels in HARMONIE

The script src/Vertical_levels.pl contains definition of vertical levels that have been used in the HIRLAM community for research and/or operational purposes. Currently the default model setup defines 65-level structure as derived by Per Unden, SMHI. Model level definitions for commonly used vertical structures in HARMONIE are listed below.

  • FourtyLevel: HIRLAM_40 model levels (same as Hirlam 6.2.1, Nov 2003 - HIRLAM 7.0, 2006 )
  • SixtyLevel: HIRLAM-60 model levels (same as Hirlam 7.1, March 2007 - 2012 )
  • [wiki:MFSixtyLevel MF_60]: MF-60 model levels (same as Meteo France AROME since 2010 )
  • SixtyfiveLevel: 65 model levels (same as Hirlam 7.4, March 2012 - )
  • other levels: Prague87, MF70, 40 (ALADIN-40), ECMWF_60.

Note that VLEV is the name of the set of A/B coefficients defining your levels set in ecf/config_exp.h. There are e.g. more than one definition for 60 levels. To print the levels just run scr/Vertical_levels.pl

Usage: scr/Vertical_levels.pl [VLEV PRINT_OPTION] where:

  • VLEV: name of your level definition
  • PRINT_OPTION=AHALF: print A coefficients for VLEV
  • PRINT_OPTION=BHALF: print B coefficients for VLEV
  • PRINT_OPTION=NLEV: print number of levels for VLEV
  • PRINT_OPTION=NRFP3S: print NRFP3S namelist values for VLEV

See here for ECMWF level definitions.

When performing HARMONIE experiment, users can select vertical levels by changing VLEV in ecf/config_exp.h. If a non-standard level number is to be chosen, the script scr/Vertical_levels.pl needs to be edited to add layer definition.

Define new eta levels

A brief description and some code on how to create new eta levels can be found in here.

There is also an interactive tool that can help you in creating a new set of levels.

The method is based on a program by Pierre Bénard, Meteo France, that is described in this gmapdoc article.

Relevant corresponding data set for different vertical structure

HARMONIE 3D-VAR and 4DVAR upper air data assimilation needs background error structure function for each given vertical layer structure. It is noted that the structure function data included in the reference HARMONIE repository const/jb_data is only useful for reference configuration. Users that runs 3DVAR/4DVAR are strongly recommended to derive proper structure function data following instructions in the Harmonie wiki using own data archive to avoid improper use of structure function.

diff --git a/previews/PR1153/ExperimentConfiguration/namelist_sfx_forecast/index.html b/previews/PR1153/ExperimentConfiguration/namelist_sfx_forecast/index.html new file mode 100644 index 0000000000..e5a76c37eb --- /dev/null +++ b/previews/PR1153/ExperimentConfiguration/namelist_sfx_forecast/index.html @@ -0,0 +1,6 @@ + +- · Harmonie wiki
GitHub
diff --git a/previews/PR1153/ForecastModel/DDH/index.html b/previews/PR1153/ForecastModel/DDH/index.html new file mode 100644 index 0000000000..71297155b9 --- /dev/null +++ b/previews/PR1153/ForecastModel/DDH/index.html @@ -0,0 +1,26 @@ + +Use of DDH · Harmonie wiki
GitHub

How to use DDH in HARMONIE-AROME

  1. To use DDH, set USEDDH="yes" in ecf/config_exp.h

  2. Set TFLAG to minute (min) if you wish to have minute output. Note that the conversion of FA to grib format does not automatically work with this setting

  3. Setting up the namelist (nam/harmonie_namelists.pm). Below is an example where point data for Dublin is extracted.

    %ddh=(
+NAMDDH => {
+'LFLEXDIA' => '.TRUE.,', # Must be TRUE
+'BDEDDH(1,01)' => '4.,', # 4 means a point
+'BDEDDH(2,01)' => '1.,',
+'BDEDDH(3,01)' => '-006.000000,', # Dublin lon
+'BDEDDH(4,01)' => '0053.000000,', # Dublin lat
+'LHDGLB' => '.FALSE.,',
+'LHDZON' => '.FALSE.,',
+'LHDDOP' => '.TRUE.,', # Must be TRUE
+'LHDPRG' => '.FALSE.,',
+'LHDPRZ' => '.FALSE.,',
+'LHDPRD' => '.FALSE.,',
+'LHDEFG' => '.FALSE.,',
+'LHDEFZ' => '.FALSE.,',
+'LHDEFD' => '.TRUE.,', # Must be TRUE
+'LHDHKS' => '.TRUE.,', # Must be TRUE
+'LHDMCI' => '.FALSE.,',
+'LHDENT' => '.FALSE.,',
+},
+);

  4. Description of the variables

VariableDescription
LHDGLBtype of domain: global domain
LHDZONtype of domain: zonal bands
LHDDOPtype of domain: limited and isolated point
LHDPRGwrite global diagnostics on listing
LHDPRZwrite zonal bands
LHDPRDwrite limited domains diagnostics on listing
LHDEFGwrite global diagnostics on file
LHDEFZwrite zonal bands diagnostics on file
LHDEFDwrite limited domain diagnostic on file
LHDHKSbudget of mass, energy, momentum, RH, soil
LHDMCIbudget of kinetic momentum
LHDENTbudget of entropy
diff --git a/previews/PR1153/ForecastModel/Forecast/index.html b/previews/PR1153/ForecastModel/Forecast/index.html new file mode 100644 index 0000000000..8a0866ec2a --- /dev/null +++ b/previews/PR1153/ForecastModel/Forecast/index.html @@ -0,0 +1,6 @@ + +Forecast · Harmonie wiki
GitHub

Forecast

scr/Forecast is the script, which initiates actual forecast run (ALADIN/AROME/ALARO depending on FLAG and PHFLAG).

  • Input parameters: none.
  • Data: Boundary files (ELSCF*-files). Initial file (fc_start). If data assimilation is used, fc_start is the analysis file. In case of dynamical adaptation, fc_start is the first boundary file. In case of AROME, Surfex initial file (SURFXINI.lfi) is also needed scr/Prep_ini_surfex.
  • Namelists: namelist templates nam/namelist_fcst${FLAG}_default are fetched based on FLAG and PHFLAG. The templates are completed in scr/Forecast based on the choices of NPROCX, NPROCY (see config-sh/submit.*), TFLAG, OUTINT, BDINT and REDUCELFI. In case of AROME also the namelists to control SURFEX-scheme nam/TEST.des and nam/EXSEG1.nam are needed.
  • Executables: as defined by MODEL.
  • Output: Forecast files (spectral files ICMSHALAD+*). In case of AROME, Surfex files containing the surface data (AROMOUT_*.lfi).

Forecast namelists

The current switches in the HARMONIE system (in ecf/config_exp.h) provide only very limited possibility to control the different aspects of the model. If the user wants to have more detailed control on the specific schemes etc., one has to modify the variety of the namelists options.

In general, the different namelist options are documented in the source code modules (e.g. src/arp/module/*.F90). Below is listed information on some of the choices.

NH-dynamics/advection/time stepping:

  • A detailed overview of the such options has been given by Vivoda (2008).

Upper air physics switches

  • Switches related to different schemes of ALADIN/ALARO physics, src/arp/module/yomphy.F90.
  • Switches related to physics schemes in AROME src/arp/module/yomarphy.F90.
  • Switches to tune different aspects of physics, src/arp/module/yomphy0.F90, src/arp/module/yomphy1.F90, src/arp/module/yomphy2.F90 and src/arp/module/yomphy3.F90
  • Switches related to HIRLAM physics, src/arp/module/yhloption.F90 and src/arp/setup/suhloption.F90.

Initialization switch

  • Initialization is controlled by namelist NAMINI/NEINI, src/arp/module/yomini.F90.

Horizontal diffusion switches

  • Horizontal diffusion is controlled by namelist NAMDYN/RDAMP*, src/arp/module/yomdyn.F90#L55. Larger the coefficient, less diffusion.

MPP switches

  • The number of processors in HARMONIE are given in config-sh/submit.*. These values are transfered in to src/arp/module/yomct0.F90#L276 and src/arp/module/yommp.F90.

Surface SURFEX switches

  • The SURFEX scheme is controlled through namelist settings in nam/surfex_namelists.pm. The different options are described here.

Archiving

Archiving has a two layer structure. Firstly, all the needed analysis forecast and field extract files are stored in ARCHIVE directory by scr/Archive_fc. This is the place where the postprocessing step expects to find the files.

At ECMWF all the requested files are stored to ECFS into directory ECFSLOC by the script scr/Archive_ECMWF

diff --git a/previews/PR1153/ForecastModel/ForecastSettings/index.html b/previews/PR1153/ForecastModel/ForecastSettings/index.html new file mode 100644 index 0000000000..41f71fda0b --- /dev/null +++ b/previews/PR1153/ForecastModel/ForecastSettings/index.html @@ -0,0 +1,6 @@ + +Settings · Harmonie wiki
GitHub

Forecast Settings

This page gives some details and advice on appropriate settings for the HARMONIE-AROME forecast

Microphysics

ICE-T

Switch ICE-T on by setting LICET=.TRUE. in harmonie_namelist.pm under &NAMPARAR in %arome. When using ICE-T (LICET), LOCND2 should be set to True, and LMODICEDEP preferably to False. LICET will override LKOGAN, so by default LKOGAN=F. Documentation: (Engdahl et al., 2020)

Description: ICE-T is a modified cloud microphysics scheme that builds upon ICE3 and OCN2D, with elements from the Thompson scheme from WRF. ICE-T was developed in cy40h1.1 for the purpose of better representation of supercooled liquid water, and downstream forecasts of atmospheric icing. The changes include stricter conditions for ice nucleation, less efficient collection of liquid water by snow and graupel, and variable rain size distribution depending on the source of the rain. (Rain originating from melting snow or graupel have larger drops, than rain originating from warm processes.)

Shallow Convection

LSHALLOWMF activates (.TRUE.) or de-activates (.FALSE.) the DUAL (dry and moist) mass flux shallow convection parameterisation. Note that with LSHALLOWMF=.FALSE. the mass flux activity as a source term for TKE in the turbulence scheme (energy cascade) will be also eliminated. Also the moist updraft transport contribution to the cloud scheme is eliminated with LSHALLOWMF=.FALSE.. See for details of the convection scheme and links to the cloud and turbulence scheme: https://doi.org/10.5194/gmd-15-1513-2022.

The scale-aware convection scheme is activated by setting LSCAWAREMF=.TRUE.. Setting this reduces the dry and moist (if present) mass flux using a tangent function scaled with the dry boundary layer height $h$ for the dry updraft and sub-cloud height plus cloud layer depth $h+h_c$ for the moist updraft:

\[f = \tanh\left(1.86 \frac{\Delta x}{h+h_c}\right)\]

NOTE: this option can only be used when LSHALLOWMF=.TRUE..

To support the model when it is trying to build up convection itself, the setting LWTHRESH=.TRUE. can be used. Depending on the gridsize, a vertical velocity threshold is defined. If the absolute value of the vertical velocity in a grid column exceeds this threshold the shallow convection is shut down.

LWTHRESH option is updated as the vertical velocity is now only diagnosed in the lowest 6km , this to prevent that high vertical velocities not related to convection are used.

LWTHRESHMOIST option works similarly to option LWTHRESH but now only the paramterized moist convection is shut down as the threshold is met, the dry convection is not affected by this option (but could be affected by LSCAWAREMF).

Note

LWTHRESH or LWTRESHMOIST options can only be active when LSHALLOWMF=.TRUE..

Turbulence scheme

HARATU

HARATU (HArmonie with RAcmo TUrbulence scheme) is the default (HARATU=yes in config_exp.h) turbulence scheme in HARMONIE-AROME originally developed for RACMO (Regional Atmospheric Climate MOdel). The length scale of this turbulence scheme is described by @(Lenderink and Holtslag, 2004). Note that HARATU is only tested in combination with LSHALLOWMF=.TRUE. and CMF_UPDRAFT='DUAL'. The later convection scheme provides input to the HARATU turbulence scheme to present the important energy cascade (from large to small scales), see https://doi.org/10.5194/gmd-15-1513-2022

diff --git a/previews/PR1153/ForecastModel/HR/index.html b/previews/PR1153/ForecastModel/HR/index.html new file mode 100644 index 0000000000..104fe20274 --- /dev/null +++ b/previews/PR1153/ForecastModel/HR/index.html @@ -0,0 +1,32 @@ + +High Res · Harmonie wiki
GitHub

High Resolution Modelling

This page gives some details and advice on settings for running HARMONIE-AROME at sub-kilometre resolutions. A number of workshops have been held on this topic; more information and presentations may be found on hirlam.org.

Default configuration to be made available via scr/Harmonie_configurations.pm. Below are some details on the various options.

Practicalities

Since experiments with higher resolutions may take a longer time than usual, it can be worthwhile to increase the PATIENCE beyond the default. For example, add the following to Env_submit

if ( $ENV{SIMULATION_TYPE} eq 'nwp' ) {
+ $job_list{'Forecast'}{'ENV'}              = $submit_type.'-v PATIENCE=28800' ;
+}

Grid choice

Within ecf/config_exp.h, it is recommended to use quadratic or cubic spectral truncations:

GRID_TYPE=QUADRATIC           # Type of grid (LINEAR|QUADRATIC|CUBIC)

These choices are cheaper and more stable. No problematic reduction in accuracy has been reported, and quadratic grids are used operationally at a number of centres.

For 750m resolution and a quadratic grid, TSTEP=30 should work well. For linear truncation, 20s will be needed.

Boundaries

Use of IFS boundaries has been found to be satisfactory.

With higher sub-kilometric resolutions, smaller domains are inevitable. To deal with domain spin-up issues with precipitation, it may be worth coupling hydrometeors from the boundary files. Within scr/MARS_get_bd and scr/gl_bd there is an option USE_IFS_CLOUD_COND, which adds cloud and hydrometeors to the the boundary files. This can be added and exported in ecf/config_exp.h if needed.

The coupling is then activated in nam/harmonie_namelists.pm under NAMGFL, e.g. for cloud ice:

  'YI_NL%NCOUPLING' => '1,',

Diffusion and controlling noise

LGWADV

By default, LGWADV=FALSE and LRDBBC=TRUE. These can be found in NAMDYNA.

It has been found that changing the values can remove noise visible in certain situations in MSLP fields; i.e. set LGWADV=TRUE and LRDBBC=FALSE. These are the values used at Météo France and ALADIN centres using the predictor-corrector time-stepping, rather than semi-implicit SETTLS (default in HARMONIE).

'''Update''': new defaults in 43h2.1.1, LGWADV=TRUE and LRDBBC=FALSE

VESL

Another option to control noise is the off-centering parameter VESL, found in NAMDYN, which is 0 by default in operational 2.5km configurations. A non-zero value such as 0.1 will smooth small-scale noise.

For some (currently unknown) reason, the LGWADV option described above cannot be used with a non-zero value of VESL; forecasts crash quickly. Given the potential of VESL to stabilise higher-resolution runs, it is probably a preferable option, i.e.

 NAMDYN=>{
+  'VESL' => '0.1,',
+},
+ NAMDYNA=>{
+  'LGWADV' => '.FALSE.,',
+  'LRDBBC' => '.TRUE.,',
+},

'''Update post-ASW2021''': this instability may in fact have been a bug, caused by the following in src/arpifs/adiab/lattex.F90:

!*       2.1   Momentum equation.
+
+
+! * LSETTLS is replaced by LLSETTLSW=.FALSE. for wind-eqn if VESL>0 because
+!   stable extrapolation deteriorates scores without improving stability.
+
+IF (PESGP > PESGM) THEN
+  LLSETTLSW=.FALSE.
+ELSE
+  LLSETTLSW=LSETTLS
+ENDIF

This is when VESL>0, SETTLS is switched off for wind equations, but no others. Seems to trigger the problem. Removing the if and keeping just 

LLSETTLSW=LSETTLS

in all cases allows VESL to run stably with LGWADV and SETTLS. (No long term verification scores tested)

Spectral horizontal diffusion

The strength of the spectral diffusion is controlled by the various RDAMP* parameters. Defaults in nam/harmonie_namelists.pm are:

 NAMDYN=>{
+  'RDAMPDIV' => '20.,',
+  'RDAMPPD' => '200000.,',
+  'RDAMPQ' => '20.,',
+  'RDAMPT' => '20.,',
+  'RDAMPVD' => '20.,',
+  'RDAMPVOR' => '20.,',
+},

With a quadratic or cubic grid with non-zero VESL, these defaults have been found to be adequate. Without VESL, higher levels of diffusion through lover RDAMP* values of 10 or even 1 are necessary.

SLHD

Experiments at Météo France suggest not to use SLHD on hydrometeors: c.f. ASM 2020 presentation by Yann Seity.

In ecf/config_exp.h 

LGRADSP=yes                             # Apply Wedi/Hortal vorticity dealiasing (yes|no)
+LUNBC=yes                               # Apply upper nested boundary condition (yes|no)

Sample configurations

Coming soon...

diff --git a/previews/PR1153/ForecastModel/NearRealTimeAerosols/index.html b/previews/PR1153/ForecastModel/NearRealTimeAerosols/index.html new file mode 100644 index 0000000000..a83223649f --- /dev/null +++ b/previews/PR1153/ForecastModel/NearRealTimeAerosols/index.html @@ -0,0 +1,6 @@ + +Near Real Time Aerosols · Harmonie wiki
GitHub

Near Real Time Aerosols

The model can be configured to use near-real-time aerosols from CAMS. This is done by setting USEAERO=camsnrt in ecf/config_exp.h, which leads to retrieval of boundary files containing aerosol mass mixing ratio fields from CAMS. Other values of USEAERO are related to use and generation of climatological (2D) aerosol. Please see scr/forecastmodelsettings.sh for some further details.

  • Namelist NAMNRTAER contains switches related to n.r.t. aerosols in cloud microphysics under src/mpa.
  • Namelist NAMPHY contains definitions for src/arpifs LAEROSEA,LAEROLAN,LAEROSOO,LAERODES,LAEROVOL,LAEROSUL,LAEROMMR,LAERONRT . LAERONRT is set true when n.r.t. aerosols are used. The others are related to climatological aerosol and are set false when n.r.t. aerosols are used.
  • Aerosol fields in YAERO_NL are defined in namelist NAMGFL. Variable NAERO defines the number of available n.r.t. aerosol species (14).
  • Namelist NAERAD contains definition of NAER=1/0 to use or not to use climatological aerosol for radiation. When LAERONRT is set true, NAER is set to 0.

NAMNRTAER namelist

The switches and some parameters can be set in NAMNRTAER (in nam/harmonie_namelists.pm)

  • LCAMS_NRT: switch on the use of CAMS aerosols in HARMONIE-AROME, the Mass mixing ratio fields must be present in the first guess and the boundary conditions. The number and name of those fields are specified in the namelist NAMGFL.
  • SSMINLO: Supersaturation at sfc level. (default 0.05%). The supersaturation activates the condensation nuclei (CN) to obtain CCN.
  • SSMINUP: Supersaturation over SSHEIGHT height (default 0.08%).
  • SSHEIGHT: Height over wich minimum SS is SSMINUP (default 100 m).
  • SSMAX: Maximum supersaturation (default 1.0%).
  • SSFACVV: Factor for dependence of SS with vertical velocity (0.0-1.0).
  • SSFACSS: Factor for dependence of SS with coarse sea salt (0.0-1.0).
  • CCNMIN: Minimum number concentration of Cloud Condensation Nuclei (CCN) inside the cloud: It is considered 10E6 (10 cm-3). Other values can be considered, but probably not over 50cm-3.
  • CLDROPMIN: Minimum CDNC inside the cloud. It is practically the same as CCNMIN. Other values can be considered, but probably not over 50cm-3.
  • IFNMINSIZE: Minimum radius of aerosol ice nucleating particles (default 0.01 micrometer).
  • LMOCA_NRT: In case of getting the aerosol fields from MOCAGE (still not in use).
  • LAEIFN: To activate Ice nuclei (mainly dust and hydrophobic organic matter and Black carbon).
  • LAERDRDEP: Activates the aerosol dry deposition. (FALSE by default).
  • LAECCN2CLDR: By default LAECCN2CLDR=FALSE, that is CDNC=CCN.
  • LAERSSEM: switch for sea salt emission (FALSE by default).
diff --git a/previews/PR1153/ForecastModel/OCDN2/index.html b/previews/PR1153/ForecastModel/OCDN2/index.html new file mode 100644 index 0000000000..18b894d04c --- /dev/null +++ b/previews/PR1153/ForecastModel/OCDN2/index.html @@ -0,0 +1,8 @@ + +Documentation of OCND2 modification of ICE3/ICE4 microphysics in AROME · Harmonie wiki
GitHub

Documentation of OCND2 modification of ICE3/ICE4 microphysics in AROME

Introduction

This option was implemented in ICE3/ICE4 microphysics in 2014 in order to improve the performance of the HARMONIE-AROME model configuration in Winter over the Arctic/Subarctic region. Errors corrected were mainly for missing low clouds in moderately cold conditions, an excess of ice clouds in the case of severe cold weather and an excess of cirrus clouds.

Implementation in CY46 - switching on the parameterisation

To use the parameterisation go to nam/harmonie_namelists.pm and set LOCND2 = .TRUE. in the namparar namelist.

About the Code

In CY46, there are two coding versions of ICE3/ICE4 - rain_ice_old.F90 and rain_ice.F90. The variable CMICRO determines which is used, OLD3 for rain_ice_old.F90 and ICE3 for rain_ice.F90. The structure of the code differs between these versions, and since the time stepping procedure is different, the result differs too. But the content of the modification for OCND2 is the same in both versions. The modifications can be be found by searching for

IF(OCND2) THEN \
+    --- new code ---\
+ENDIF

The main OCDN2 modifications are

  1. Tuning factors for reducing the rate of deposition/evaporation of snow and graupel. See code block “1.2 COMPUTE SOME CONSTANT PARAMETERS” in rain_ice_old.F90 or in ice4_slow.F90. The tuning factors are then used later in rain_ice_old.F90, see code block “3.4.3 compute the deposition on rs: RVDEPS" for snow and in “3.4.6 compute the deposition on rg: RVDEPG” for graupel. In the rain_ice.F90 framework it is all done in the routine ice4_slow.F90. More information about the tuning parameters is included later in this documentation.
  2. Mask to limit computation: Set by tuning parameters in the code block “1.2 COMPUTE SOME CONSTANT PARAMETERS“ in rain_ice_old.F90 or in aro_rain_ice.F90 within the rain_ice.F90 framework. For OCND2=FALSE the limits are hard-coded.
  3. The cloud ice crystal concentration: Modified with OCND2, see code block “3.1.1 compute the cloud ice concentration” in rain_ice_old or ice4_nucleation.F90 within the rain_ice.F90 framework.
  4. Turn large cloud ice crystals into snow: See code block “3.4.5 B:” in rain_ice_old.F90 or ice4_fast_si.F90 within the rain_ice.F90 framework.
  5. Omit collision between snow and graupel since the effect in nature is very small and thus better to omit and speed up the computation a little. See code block “6.2.5” in rain_ice_old.F90 or ice4_fast_rg.F90 respectively
  6. Sub grid-scale calculation of deposition/evaporation of cloud ice. See code block “7.2 Bergeron-Findeisen effect: RCBERI” in rain_ice_old.F90 or ice4_fast_si.F90 for the rain_ice.F90 set up.

There is also an important difference in condensation.F90: With OCND2, only liquid cloud water is handled within the statistical cloud scheme, not both ice and water as is the case with OCND2=F. With OCND2=F, the total cloud cover is calculated directly from the statistical cloud scheme. With OCND2=T, the total cloud cover is calculated as a sum of a liquid part, which is basically just the cloud cover from the statistical cloud scheme and an ice part which is based on the relative humidity with respect to ice and on the content of solid water species.

There are two new routines for OCND2:

  1. icecloud.F90 is used for the sub grid-scale handling of relative humidity with respect to ice and thus for ice clouds. It is called from condensation.F90.
  2. ice4_fast_si.F90 is only used by the newer rain_ice.F90 routine. As already mentioned, it deals with deposition/evaporation of cloud ice.

Tuning parameters

The tuning parameters used specifically for OCND2 can be divided into three categories:

Only having an effect if OCND2 is set to TRUE and used for SPP (April 2023).

VariableDescription
RFMIN(21)Tuning factor for ice clouds, such as cirrus. A larger value means a larger effect of the presence of solid water and thus more ice clouds. (The value is somewhat dependent on what kind of measurement one compares with, and how thin a cirrus cloud should be to be counted as a cloud. A range of 0.5 to 3 should be enough.)

Only having effect if OCND2 is set to TRUE but currently (April 2023) not used in SPP.

VariableDescription
RFMIN(12)Threshold supersaturation with respect to ice in the supersaturated part of the grid-box for treatment in the microphysics computation. A larger value gives more supersaturation and a somewhat faster computation. Values that are too large are physically unrealistic, but there seems to be no consensus about the best value.
RFMIN(13)Threshold mixing ratio for different non-vapor water species treated in the microphysics computation. Larger values result in faster computation, but possible important processes, when only small mixing ratios of water species are present, may be missed.
RFMIN(15)Ice crystal diameter(m) for conversion from cloud ice to snow. Larger values lead to more ice and less snow.
RFMIN(27)Experimental! Minimum temperature (K) used for Meyers ice number concentration. Larger values give less ice for temperatures below RFRMIN(27).
RFMIN(39)Speed factor for deposition/evaporation rate of graupel. Larger values give faster deposition /evaporation.
RFMIN(40)Speed factor for deposition/evaporation rate of snow. Larger values give faster deposition /evaporation.

Have an effect even when OCND2 is not used, but designed for OCND2

VariableDescription
RFRMIN(1),RFRMIN(2),RFRMIN(3) and RFRMIN(4)Different thresholds for snow, ice, graupel and graupel again, respectively, leading to conversion of super-cooled rain into graupel. A higher value gives more super-cooled rain, but may be less physically realistic.
RFRMIN(7)Tuning factor for the collisions between rain and snow. Higher values give less super-cooled rain and more snow. Zero means that those collisions are disregarded (probably OK).

Full list of RFRMIN variables (included here for completeness, not all OCDN2-related)

VariableValueDescription
RFMIN(1)1.0E−5Higher value means more supercooled rain and somewhat less graupel.
RFMIN(2)1.0E−8""
RFMIN(3)3.0E-7""
RFMIN(4)3.0E-7""
RFMIN(5)1.0E-7Higher value means less graupel and more snow. Experimental.
RFMIN(6)0.15Higher value means more graupel and less snow. Experimental.
RFMIN(7)0.Higher value means less supercooled rain and somewhat more snow.
RFMIN(8)1.> 1. Increase melt of graupel, < 1 decrease it. Experimental.
RFMIN(9)1.> 1 means increase IN-concentration and <1 decrease.
RFMIN(10)10.>10 means faster Kogan autoconversion <10 slower, only active for LKOGAN=T. This originates from the fact that the formula was based on an LES model with a higher horizontal resolution. It is easy to show that with a coarser resolution and an inhomogeneous cloud liquid field one has to add a compensating factor in order to retain the original mean autoconversion. Tests shows that a lower value e.g 3 would be better, and more in line with what ECMWF is using. The value 10 is, to some extent, a way of decreasing fog, but now we have a lot of other ways to reduce fog.
RFMIN(11)1.Setting e.g. 0.01 means that subgrid-scale fraction of cloud water is used. Minimum cloud fraction=0.01. Only active for LKOGAN=T.
RFMIN(12)0.The level of supersaturation in the ice-supersaturated part of grid-box needed to be treated in ice microphysics. (Greg Thompson recommend a higher value 0.05-0.25, in MetCoOp 0.05 is used) Higher value means faster computations, but also that any ice deposition in clear sky is neglected for ice-supersaturated between zero and RFRMIN(12). Only used with OCND2.
RFMIN(13)1.0E-15The mixing-ratio of any water species needed to be treated in ice microphysics. The value 1.0E-15 is taken from old Hirlam. Only used with OCND2.
RFMIN(14)120.Time scale for conversion of large ice crystals to snow. Only used with LMODICEDEP (Experimental).
RFMIN(15)1.0E-4Diameter for conversion ice crystals into snow. Larger value gives more ice and less snow.
RFMIN(16)0.“C” parameter for size distribution of snow. (constant for number concentration, N=Cλ^x) Only active if non-zero. Experimental
RFMIN(17)0.“x” parameter for size distribution of snow. (slope for number concentration, N=Cλ^x) Only active if RFRMIN(16) is non-zero. Experimental.
RFMIN(18)0.With RFRMIN(18)=1, snow and graupel melt are based on wet bulb temperature, instead of temperature and leads to slower melting. Experimental.
RFMIN(19)0.Threshold cloud thickness for StCu/Cu transition [m] Only active for EDMF scheme and if non-zero, but very small effect.
RFMIN(20)0.Threshold cloud thickness used in shallow/deep decision [m]. Only active for EDMF scheme and if non-zero, higher value gives more shallow convection and less deep model resolved convection.
RFMIN(21)1.Tuning parameter for ice clouds. Larger value gives more cirrus and other ice clouds.
RFMIN(22)1.Tuning parameter for CDNC at lowest model level . Lower value give lower CDNC. RFRMIN(22)=0.5 means CDNC= old CDNC x 0.5.
RFMIN(23)0.5Tuning parameter only active with LHGT_QS. The lower limit for reduction of VSIGQSAT.
RFMIN(24)1.5Tuning parameter only active with LHGT_QS. The upper limit for increase of VSIGQSAT.
RFMIN(25)30.Tuning parameter only active with LHGT_QS. The level thickness for which VSIGQSAT is unchanged with LHGT_QS.
RFMIN(26)0.If > 0.01, it replaces default CDNC everywhere. So RFRMIN(26)=50E6 (Beware of that it is in m-3!) gives CDNC = 50 cm-3 at reference level (1000 hPa) and RFRMIN(26) x pressure/ ref-pressure elsewhere.
RFMIN(27)0.Minimum assumed temperature with respect to Meyers IN - concentration (K). Gives less IN concentration for temperatures below the value set. Experimental!
RFMIN(28)0.Currently not used.
RFMIN(29)0.If >0. and RFRMIN(22)>0 it gives the upper limit in metres for which the reduction of CDNC has an effect. A linear decrease from the lowest level to RFRMIN(29) meters is assumed.
RFMIN(30)1.If not unity, CDNC is reduced/increased over sea with a factor RFRMIN(30) for the lowest model level and linearly reaching "no change" at RFRMIN(29) m height. If RFRMIN(29) is unset, RFRMIN(30) only affects the lowest model level.
RFRMIN(31:38)0.Currently not used.
RFRMIN(39)0.25.Reduction factor for deposition/evaporation of graupel. Only used when OCND2=T and LMODICEDEP=F.
RFRMIN(40)0.15Reduction factor for deposition/evaporation of snow. Only used when OCND2=T and LMODICEDEP=F.
diff --git a/previews/PR1153/ForecastModel/Outputlist/index.html b/previews/PR1153/ForecastModel/Outputlist/index.html new file mode 100644 index 0000000000..b8216ac00f --- /dev/null +++ b/previews/PR1153/ForecastModel/Outputlist/index.html @@ -0,0 +1,10 @@ + +Output List · Harmonie wiki
GitHub

Parameter list and GRIB definitions

HARMONIE system output

The HARMONIE system writes its primary output, in FA format, to the upper air history files ICMSHHARM+llll and the SURFEX history files ICMSHHARM+llll.sfx, where HARM is the four-character experiment identifier set in the configuration file config_exp.h, and llll is normally the current timestep in hours. The files are designed to be complete snapshots of respective model state described by the system for a particular time point. In addition more model output including post-processing/diagnostic fields can be written out during the forecast model integration, such as those model diagnostics or pressure level diagnostics, also in FA format, as PFHARMDOMAIN+llll. The FA files can be considered to be internal format files. All of them can be converted to GRIB files during the run for external usage. The name convention is as follows:

  • Forecast upper air history files: ICMSHHARM+llll -> fcYYYYMMDDHH+lll_grib (GRIB1) or fcYYYYMMDDHH+lll_grib2 (GRIB2)
  • Forecast Surfex history files: ICMSHHARM+llll.sfx -> fcYYYYMMDDHH+lll_grib_sfx (GRIB1 only)
  • Forecast Surfex selected output: ICMSSELE+llll.sfx -> fcYYYYMMDDHH+lll_grib_sfxs (GRIB1 only)
  • Postprocess files: PFHARMDOMAIN+llll.hfp -> fcYYYYMMDDHH+lllgrib_fp (GRIB1) or fcYYYYMMDDHH+lllgrib2_fp (GRIB2)
  • Analysis upper air history files: ICMSHANAL+0000 -> anYYYYMMDDHH+000grib (GRIB1) or anYYYYMMDDHH+000grib2 (GRIB2) (1)
  • Analysis SURFEX history files: ICMSHANAL+0000.sfx -> sa2019041600+000grib_sfx (only GRIB1 for the time being)

GRIB1 table 2 version in HARMONIE

To avoid conflicts with archived HIRLAM data HARMONIE uses version 253 of table 2. The table is based on the standard WMO version 3 of table 2 and postion 000-127 is kept the same as in the WMO. Note that accumulated and instantaneous versions of the same parameter differ only by the time range indicator. It is thus not sufficient to specify parameter, type and level when you refer to an accumulated parameter, but the time range indicator has to be included as well.

The translation of SURFEX files to GRIB1 is still incomplete and contains several WMO violations. This is not changed in the current release but will revised later. However, the upper air history file also includes the most common surface parameters and should be sufficient for most users.

The current table 2 version 253 definition files for gribapi can be found in `util/glgrib_api/definitions/`. These local definition files assume centre=233 (Dublin) and should be copied to your own GRIB-API installation. You are strongly recommended to set your own code for generating centre fore operational usage of the data.

GRIB2 in HARMONIE

The possibility to convert to GRIB2 has been introduced in release-43h2. So far the conversion is restricted to atmospheric history and fullpos files only. To get the output in GRIB2 set ARCHIVE_FORMAT=GRIB2 in ecf/config_exp.h. Please notice that if ARCHIVE_FORMAT=GRIB2 is selected, SURFEX files will be converted to GRIB1 anyway (for the time being). To convert from GRIB1 with GRIB2 using grib_filter we have to tell EcCodes how to translate the parameters. This is done by using the internal HARMONIE tables and setting

export ECCODES_DEFINITION_PATH=$SOME_PATH_TO_GL/gl/definitions:$SOME_PATH_TO_ECCODES/share/eccodes/definitions

Note that there are a few parameters that are not translated to GRIB2 to and those has to be excluded explicitly.

List of parameters

header abbreviations in the tables:

abbr.descriptionsee table
lvTlevelTypelevel types
iOPindicatorOfParameterindicator of parameter
ddiscipline
pCparameterCategory
pNparameterNumber
levlevel
sTstepTypetime range indicator

3D model state variables on model levels (1-NLEV), levelType=hybrid

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
SNNNHUMI.SPECIFIqhushy510101inskg/kgSpecific humidity
SNNNLIQUID_WATERcwat_condclwhy7601831inskg/kgSpecific cloud liquid water content
SNNNSOLID_WATERciwc_condclihy5801841inskg/kgSpecific cloud ice water content
SNNNSNOWsnow_cond#hy18401861inskg/kgSpecific snow water content
SNNNRAINrain_cond#hy18101851inskg/kgSpecific rain water content
SNNNGRAUPELgrpl_cond#hy20101321inskg/kgSpecific graupel
SNNNTKEtketkehy200019111insJ/kgTurbulent Kinetic Energy
SNNNCLOUD_FRACTItccclthy71061921ins0-1Total cloud cover
SNNNPRESS.DEPARTpdep#hy2120381insPaPressure departure
SNNNTEMPERATUREttahy110001insKTemperature
SNNNVERTIC.DIVERvdiv#hy213021921inss-1Vertical Divergence
SNNNWIND.U.PHYSuuahy330221insm/su-component of wind
SNNNWIND.V.PHYSvvahy340231insm/sv-component of wind

2D Surface, prognostic/diagnostic near-surface and soil variables, levelType=heightAboveGround

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
SURFPRESSIONprespshag10300insPaSurface pressure
SURFTEMPERATUREtts_radhag110000insKSurface temperature
CLSTEMPERATUREttashag110002insKTemperature at 2m
CLSMAXI.TEMPERATtmaxtasmaxhag150002maxKMaximum temperature (FREQ_RESET_TEMP)
CLSMINI.TEMPERATtmintasminhag160002minKMinimum temperature (FREQ_RESET_TEMP)
CLSVENT.ZONALuuashag3302210insm/su-component of wind at 10m, relative to model coordinates
CLSVENT.MERIDIENvvashag3402310insm/sv-component of wind at 10m, relative to model coordinates
CLSHUMI.SPECIFIQqhusshag510102inskg/kgSpecific humidity at 2m
CLSHUMI.RELATIVErhurshag52011922ins0-1Relative humidity at 2m
SURFRESERV.NEIGEsdwesnwhag6501600inskg/m2Snow depth water equivalent
CLPMHAUT.MOD.XFUmldzmlahag6701930insmHeight (in meters) of the PBL out of the model
SURFNEBUL.TOTALEtccclt_inshag71061920ins0-1Total cloud cover
SURFNEBUL.CONVECcccclc_inshag72061930ins0-1Convective cloud cover
SURFNEBUL.BASSElcccll_inshag73061940ins0-1Low cloud cover
SURFNEBUL.MOYENNmccclm_inshag74061950ins0-1Medium cloud cover
SURFNEBUL.HAUTEhccclh_inshag75061960ins0-1High cloud cover
SURFRAYT.SOLAIREswavr#hag1160470insW/m2Instantaneous surface solar radiation (SW down global) Parameter identifier was 116, again is???
SURFRAYT.TERRESTlwavr#hag1150540insW/m2Instantaneous longwave radiation flux
SURFCAPE.MOD.XFUcapecapehag1600760insJ/kgModel output CAPE (not calculated by AROME physics)
SURFDIAGHAILxhail#hag161012030ins0-1AROME hail diagnostic, LXXDIAGH = .TRUE.
CLSU.RAF.MOD.XFUugstugshag162022310maxm/sU-momentum of gusts from the model. LXXGST = .TRUE. in NAMXFU. gives gust between current and previous output time step (FREQ_RESET_GUST)
CLSV.RAF.MOD.XFUvgstvgshag163022410maxm/sV-momentum of gusts from the model. LXXGST = .TRUE. in NAMXFU. gives gust between current and previous output time step (FREQ_RESET_GUST)
SURFINSPLUIErain#hag18101650inskg/m2Instantaneous rain
SURFINSNEIGEsnow#hag18401530inskg/m2Instantaneous snow
SURFINSGRAUPELgrpl#hag20101750inskg/m2Instantaneous graupel
CLSMINI.HUMI.RELrmn2m#hag2410112min0-1Minimum relative moisture at 2m over 3h
CLSMAXI.HUMI.RELrmx2m#hag2420112max0-1Maximum relative moisture at 2m over 3h
CLSRAFALES.POSfgwsgsmaxhag228022210maxm/sGust wind speed

2D Surface, accumulated near-surface and soil variables

Note that all these are coded with stepType=accum

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
S065RAYT SOL CLcssw#hy130041165accJ/m2SW net clear sky rad
S065RAYT THER CLcslw#hy13105665accJ/m2LW net clear sky rad
SURFACCGRAUPELgrplprgrplhag20101750acckg/m2Accumulated graupel
SURFACCNEIGEsnowprsnhag18401530acckg/m2Accumulated snowfall
SURFACCPLUIErainprrainhag18101650acckg/m2Accumulated rain
SURFDIR NORM IRRdneridshag1403630accJ/m2Direct normal exposure
SURFFLU.CHA.SENSshfhfsshag12200110accJ/m2Sensible heat flux
SURFFLU.LAT.MEVAlhehfls_evahag132011930accJ/m2Latent heat flux through evaporation
SURFFLU.LAT.MSUBlhsubhfls_sblhag244012020accJ/kgLatent Heat Sublimation
SURFFLU.MEVAP.EAwevapevspsblhag2450160acckg/m2Water evaporation
SURFFLU.MSUBL.NEsnsubsbl_snowhag24601620acckg/m2Snow sublimation
SURFFLU.RAY.SOLAnswrsrsnshag1110490accJ/m2Net shortwave radiation flux (surface)
SURFFLU.RAY.THERnlwrsrlnshag1120550accJ/m2Net longwave radiation flux (surface)
SURFRAYT DIR SURswavrrsdsdirhag1160470accJ/m2Shortwave radiation flux
SURFRAYT SOLA DEgradrsdshag1170430accJ/m2Global radiation flux
SURFRAYT THER DElwavrrldshag1150540accJ/m2Longwave radiation flux
SURFTENS.TURB.MEvflxtauvhag125021990accN/m2Momentum flux, v-component
SURFTENS.TURB.ZOuflxtauuhag124021980accN/m2Momentum flux, u-component

2D TOA, diagnostic and accumulated variables, levelType=nominalTop

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
SOMMFLU.RAY.SOLAnswrtrsntnt1130490accJ/m2Net shortwave radiation flux(atmosph.top)
SOMMFLU.RAY.THERnlwrtrlntnt1140550accJ/m2Net longwave radiation flux(atmosph.top)
SOMMRAYT.SOLAIREnswrt#nt1130490insW/m2Net shortwave radiation flux(atmosph.top)
SOMMRAYT.TERRESTnlwrt#nt1140550insW/m2Net longwave radiation flux(atmosph.top)
SOMMRAYT SOL CLcsswrsntcsnt13004110accJ/m2TOA Net shortwave clear sky radiation(atmosph.top)
SOMMRAYT THER CLcslwrlntcsnt1310560accJ/m2TOA Net longwave clear sky radiation(atmosph.top)
TOPRAYT DIR SOMswavrrsdtnt1160470accJ/m2TOA Accumulated SW down radiation Parameter identifier was 117
SOMMTBOZCLEARbtozcs#nt170-1-1-10-KBrightness temperature OZ clear
SOMMTBOZCLOUDbtozcl#nt171-1-1-10-KBrightness temperature OZ cloud
SOMMTBIRCLEARbtircs#nt172-1-1-10-KBrightness temperature IR clear
SOMMTBIRCLOUDbtircl#nt173-1-1-10-KBrightness temperature IR cloud
SOMMTBWVCLEARbtwvcs#nt174-1-1-10-KBrightness temperature WV clear
SOMMTBWVCLOUDbtwvcl#nt175-1-1-10-KBrightness temperature WV cloud

2D Surface, Postprocessed variables (fullpos)

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
SURFCAPE.POS.F00capecapehag1600760insJ/kgConvective available potential energy (CAPE)
SURFCIEN.POS.F00cincinhag1650770insJ/kgConvective inhibition (CIN)
SURFLIFTCONDLEVlcl#ac1670360insmLifting condensation level (LCL)
SURFFREECONVLEVlfc#lfc1680360insmLevel of free convection (LFC)
SURFEQUILIBRLEVlnb#lnb1690360insmLevel of neutral buoyancy (LNB)

2D Surface, constant near-surface and soil variables

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
SPECSURFGEOPOTENzphis_shag60340insm2/s2Geopotential relative to mean sea level. "... contains a GRID POINT orography which is the interpolation of the departure orography"
SURFIND.TERREMERlsmlsmhag812000ins0-1Land-sea mask
SURFAEROS.SEAaers#hag2510131920inskg/kgSurface aerosol sea (Marine aerosols, locally defined GRIB)
SURFAEROS.LANDaerl#hag2520131930inskg/kgSurface aerosol land (Continental aerosols, locally defined GRIB)
SURFAEROS.SOOTaerc#hag2530131940inskg/kgSurface carbon aerosol (Carbone aerosols, locally defined GRIB)
SURFAEROS.DESERTaerd#hag2540131950inskg/kgSurface aerosol desert (Desert aerosols, locally defined GRIB)
SURFAEROS.VOLCAN##hag197-1-1-1-1Surface aerosol volcan (Stratospheric ash, to be locally defined GRIB)
SURFAEROS.SULFAT##hag198-1-1-1-1Surface aerosol sulfate (Stratospheric sulfate, to be locally defined GRIB)
SURFA.OF.OZONEao#hag2480141920inskg/kgA Ozone, First ozone profile (A), locally defined GRIB
SURFB.OF.OZONEbo#hag2490141930inskg/kgB Ozone, Second ozone profile (B), locally defined GRIB
SURFC.OF.OZONEco#hag2500141940inskg/kgC Ozone, Third ozone profile (C), locally defined GRIB
PROFTEMPERATUREslt#dbl8523180insKSoil Temperature
PROFRESERV.EAUsm#dbl8623200inskg/m2Deep Soil Wetness
PROFPROP.RMAX.EAswv#dbl23823250inskg/m2Climate relaxed deep soil wetness
PROFRESERV.GLACEwsoice#dbl19323220inskg/m2Deep soil ice

2D variables on special surfaces

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
KT273ISOT_ALTITh#isot803627315insmAltitude of 0-degree isotherm
KT263ISOT_ALTITh#isot803626315insmAltitude of -10-degree isotherm
SURFISOTPW0.MALTh#isot0wb80360insmAltitude of iso-tprimw=0
SURFTOT.WAT.VAPOwvintprwea5401640inskg/m2Total column integral water vapour
WFPOWERINSwfpower_inswfpower_insea21102390insMWWind power production, instantaneous (LWINDFARM=.TRUE. in NAMPHY)
WFPOWERACCwfpower_accwfpower_accea21102390accMJWind power production, accumulated (LWINDFARM=.TRUE. in NAMPHY)

Postprocessed variables on different surface types

Through the postprocessing sofware fullpos HARMONIE offers a number of variables postprocessed on different surface types. For the current choice of variables, surfaces and levels please see scr/Select_postp.pl.

State variables and diagnostics on pressure levels, leveltype=isobaricInhPa

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
PNNNNNWIND.U.PHYuuapl33022NNNNNinsm/su-component of wind
PNNNNNWIND.V.PHYvvapl34023NNNNNinsm/sv-component of wind
PNNNNNTEMPERATURttapl11000NNNNNinsKTemperature
PNNNNNHUMI.SPECIqhuspl51010NNNNNinskg/kgSpecific humidity
PNNNNNLIQUID_WATcwat_condclwpl760183NNNNNinskg/kgSpecific cloud liquid water content
PNNNNNSOLID_WATEciwc_condclipl580184NNNNNinskg/kgSpecific cloud ice water content
PNNNNNCLOUD_FRACtcc#pl7106192NNNNNins0-1Total cloud cover
PNNNNNSNOWsnow_cond#pl1840186NNNNNinskg/kgSpecific snow water content
PNNNNNRAINrain_cond#pl1810185NNNNNinskg/kgSpecific rain water content
PNNNNNGRAUPELgrpl_cond#pl2010132NNNNNinskg/kgSpecific graupel
PNNNNNGEOPOTENTIzphipl6034NNNNNinsm2/s2Geopotential
PNNNNNHUMI_RELATrhurpl5201192NNNNNins0-1Relative humidity
PNNNNNTHETA_PRIMpaptthetaEpl14003NNNNNinsKPseudo-adiabatic potential temperature
PNNNNNTHETA_VIRTvptmp#pl1760015NNNNNinsKVirtual potential temperature
PNNNNNVERT.VELOCwwapl40029NNNNNinsm/sGeometrical vertical velocity
PNNNNNPOT_VORTICpvpvpl40214NNNNNinsK m2/kg/sPotential vorticity
PNNNNNABS_VORTICabsv#pl410210NNNNNinss-1Absolute vorticity
PNNNNNDIVERGENCEd#pl440213NNNNNinss-1Relative divergence
  • NNNNN is in Pascals.
  • From FullPos documentation: "Warning: fields on pressure levels bigger or equal to 1000 hPa are written out with truncated names; for example, temperature at 1000 hPa is P00000TEMPERATURE while P00500TEMPERATURE could be as well the temperature at 5 hPa or the temperature at 1005 hPa!"

State variables and diagnostics on height levels, levelType=heightAboveGround

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
HNNNNNWIND.U.PHYuuahag33022NNNNNinsm/su-component of wind
HNNNNNWIND.V.PHYvvahag34023NNNNNinsm/sv-component of wind
HNNNNNTEMPERATURttahag11000NNNNNinsKTemperature
HNNNNNLIQUID_WATcwat_condclwhag760183NNNNNinskg/kgSpecific cloud liquid water content
HNNNNNSOLID_WATEciwc_condclihag580184NNNNNinskg/kgSpecific cloud ice water content
HNNNNNCLOUD_FRACtccclthag7106192NNNNNins0-1Total cloud cover
HNNNNNSNOWsnow_cond#hag1840186NNNNNinskg/kgSpecific snow water content
HNNNNNRAINrain_cond#hag1810185NNNNNinskg/kgSpecific rain water content
HNNNNNGRAUPELgrpl_cond#hag2010132NNNNNinskg/kgSpecific graupel
HNNNNNHUMI_RELATrhurhag5201192NNNNNins0-1Relative humidity
HNNNNNPRESSUREpresphag1030NNNNNinsPaPressure
  • NNNNN is in meters.

State variables and diagnostics on PV levels, GRIB1 level type 117, levelType=potentialVorticity

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
VNNNGEOPOTENTIELz#pv6034NNNinsm2/s2Geopotential
VNNNTEMPERATUREt#pv11000NNNinsKTemperature
VNNNPRESSUREpres#pv1030NNNinsPaPressure
VNNNHUMI_RELATIVr#pv5201192NNNins0-1Relative humidity
VNNNHUMI.SPECIFIq#pv51010NNNinskg/kgSpecific humidity
VNNNWIND.U.PHYSu#pv33022NNNinsm/su-component of wind
VNNNWIND.V.PHYSv#pv34023NNNinsm/sv-component of wind
VNNNVITESSE_VERTomega#pv39028NNNinsPa/sPressure vertical velocity (DYNAMICS=h)
VNNNVERT.VELOCITw#pv40029NNNinsm/sGeometrical vertical velocity (DYNAMICS=nh)
VNNNTEMPE_POTENTpt#pv13002NNNinsKPotential temperature
VNNNABS_VORTICITabsv#pv410210NNNinss-1Absolute vorticity
VNNNDIVERGENCEd#pv440213NNNinss-1Relative divergence
VNNNTHETAPRIMWpapt#pv14003NNNinsKPseudo-adiabatic potential temperature
  • "pv" stream is not available by default
  • NNN is in deci-PVU (1PVU = 1x10-6 K m2 kg-1 s-1) in FA files. PV levels must be in SI units in namelists
  • GRIB1 levels are in milli-PVU. Currently gl does not convert devi-PVU (FA) to milli-PVU (GRIB1)

State variables and diagnostics on Theta levels, GRIB1 level type 113, levelType=theta

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
TNNNGEOPOTENTIELz#th6034NNNinsm2/s2Geopotential
TNNNTEMPERATUREt#th11000NNNinsKTemperature
TNNNPRESSUREpres#th1030NNNinsPaPressure
TNNNHUMI_RELATIVr#th5201192NNNins0-1Relative humidity
TNNNHUMI.SPECIFIq#th51010NNNinskg/kgSpecific humidity
TNNNWIND.U.PHYSu#th33022NNNinsm/su-component of wind
TNNNWIND.V.PHYSv#th34023NNNinsm/sv-component of wind
TNNNVITESSE_VERTomega#th39028NNNinsPa/sPressure vertical velocity (DYNAMICS=h)
TNNNVERT.VELOCITw#th40029NNNinsm/sGeometrical vertical velocity (DYNAMICS=nh)
TNNNABS_VORTICITabsv#th410210NNNinss-1Absolute vorticity
TNNNPOT_VORTICITpv#th40214NNNinsK m2/kg/sPotential vorticity
TNNNDIVERGENCEd#th440213NNNinss-1Relative divergence
  • "th" stream is not available by default
  • NNN is in Kelvin.

FA fields without any default GRIB1 translation

Some very special fields are left without any default translation. Please see in the gl documentation on how to add you own translation.

FA nameUnitComment
CUF1PRESSURECoupling error field.
THETAPWP_FLUXK m-4 s-1Instantaneous thetaprimwprim surface flux
CLPMOCON.MOD.XFUkg kg-1 s-1MOCON model output
ATMONEBUL.TOTALEAccumulated Total cloud cover.
ATMONEBUL.CONVECAccumulated Convective cloud cover.
ATMONEBUL.BASSEAccumulated Low cloud cover.
ATMONEBUL.MOYENNAccumulated Medium cloud cover.
ATMONEBUL.HAUTEAccumulated High cloud cover.
SURFCFU.Q.TURBULAccumulated contribution of Turbulence to Q.
SURFCFU.CT.TURBULAccumulated contribution of Turbulence to CpT
SUNSHI. DURATIONSunshine duration.
SURFFL.U TURBULContribution of Turbulence to U.
SURFFL.V TURBULContribution of Turbulence to V.
SURFFL.Q TURBULContribution of Turbulence to Q.
SURFFL.CT TURBULContribution of Turbulence to CpT
SNNNSRCSecond order flux.

Variables postprocessed by gl

The following fields are can be generated by gl from a history file and are thus not necessarily available as FA fields in Harmonie's FA output. When calculating these post-processed fields, make sure the required fields to derive them are in the input files! For details, check util/gl/grb/postprocess.f90 & the routines called therein.

Single level fields

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
MSLPRESSUREprespslhas10300insPaMSLP. gl calculates MSLP independent of AROME/!FullPos
#tdtdhag170062insKDew point temperature
#vis#hag2001900insmVisibility
#wdir#ttt31020lllinsDeg. trueWind direction. gl calculates based on u[33,ttt,lll] and v[34,ttt,lll] wind components
#ws#ttt32021lllinsm/sWind speed. gl calculates based on u[33,ttt,lll] and v[34,ttt,lll] wind components
TOT.WATER.PRECIPtpprhag610180acckg/m2Total precipitation, gl calculates TP![61,105,0]=rain![181,105,0]+snow![184,105,0]+graupel![201,105,0]+hail![204,105,0]
TOT.SOLID.PRECIPtpsolidprsolidhag185012000acckg/m2Total solid precipitation, gl calculates ![185,105,0]=snow![184,105,0]+graupel![201,105,0]+hail![204,105,0]
#mldzmlahag6701930insmMixed layer depth/boundary layer height
#tcc#hag71061922ins0-1Fog, cloud fraction of lowest model level
#icei#hag1350ins-Icing index
#atmiceg#hy??01205insm/sIcing index, Atmospheric ice growth rate
#icei2#hag/?134011940ins-Icing index version 2
#psct#hag/ct?1360400insKPseudo satellite image, cloud top temperature (infrared)
#pstb#hag137041980insKPseudo satellite image, water vapour brightness temperature
#pstbc#hag138041990insKPseudo satellite image, water vapour br. temp. + correction for clouds
#pscw#hag139042000ins-Pseudo satellite image, cloud water reflectivity (visible)
#prtp#hag14401190inscodePrecipitation type, 0:drizzle, 1:rain, 2:sleet, 3:snow, 4:freezing drizzle, 5:freezing rain, 6:graupel, 7:hail
#fg#ttt2280222lllmaxm/sGust wind speed, calculated from ugst & vgst on corresponding level & levelType
#hti#hag1480171930ins-Helicopter Triggered lightning Index
#transmit#hag149061990ins-Transmittance
#cat#hag145019220ins-|%CAT (clear air turbulence) index
#bvf#hag1590192020inss-1Brunt Vaisala frequency

Integrated quantities

FA nameshortNameNCnamelvTiOPdpCpNlevsTunitsdescription
TOT.NEB.ICEciwc_vintcliviea5801700inskg/m2Vertical integral of cloud ice
TOT.NEB.WATcwat_vintclqviea7601690inskg/m2Vertical integral of cloud liquid water
#msca#ea133061970ins0-1Mask of significant cloud amount
#cape#hag1600760insJ/kgConvective Available Potential Energy, comes in two flavours, cape_version=1|2, where the second is compatible with the ECMWF version
#cin#hag1650770insJ/kgConvective inhibition, , comes in two flavours, cape_version=1|2, where the second is compatible with the ECMWF version
#rain_vintclrviea18101450inskg/m2Vertical integral of rain
#snow_vintclsviea18401460inskg/m2Vertical integral of snow
#grpl_vintclgviea20101740inskg/m2Vertical integral of garupel
#cb#ea18606110insmCloud base
#ct#ea18706120insmCloud top
#cb38#hag?189061983insmCloud base >3/8
#lgt#ea2090171920insflash/hLightning intensity
#lmxws#ea/mw?1420360insmLevel of max wind speed
#maxucol#ea1640220insm/sMax u-component in column
#maxvcol#ea1770230insm/sMax v-component in column
#lmxice#ea143011990insmIcing index, Level of max icing
#mxicegr#ea141012040ins1Icing index, Max icing growth index (0-4)
#blice#ea14601960insmIcing index, Bottom level of icing
#tlice#ea14701950insmIcing index, Top level of icing
#cat_maxlev#ea1500192010insmLevel of max CAT index
#cat_max#ea1510191970ins-Max CAT index
#cat_b#ea1520191980insmBottom level of CAT
#cat_t#ea1530191990insmTop level of CAT

GRIB encoding information

Time units, WMO code table 4

The following time units are used to encode GRIB edition 1 data

CodeUnit
0Minute
1Hour
1315 minutes
1430 minutes

Time range indicator, WMO code TABLE 5

CodeabbrDefinition
0insForecast product valid for reference time + P1 (P1 > 0), or Uninitialized analysis product for reference time (P1 = 0)
2min/maxProduct with a valid time ranging between reference time + P1 and reference time + P2. Used for min/max values
3avgAverage (reference time + P1 to reference time + P2)
4accAccumulation (reference time + P1 to reference time + P2) product considered valid at reference time + P2

Note that fields available as both instanteous and accumulated values like e.g. rain has the same parameter values and can only be distinguished by the time range indicator.

Level types, WMO Code table 3

level typenameabbrWMO/HIRLAM type definitionUnitsnotes
001surfacesfcGround or water surfaceWMO
002cloudBasecbCloud base levelWMO
003cloudTopctLevel of cloud topsWMO
004isothermZeroisot0Level of 0°C isothermWMO
005adiabaticCondensationacLevel of Adiabatic Condensation Lifted from the SurfaceWMO
006maxWindmwMaximum wind levelWMO
007tropopausetpTropopauseWMO
008nominalTopntTop-of-atmosphereWMO
020isothermalisotIsothermal levelTemperature in 1/100 KWMO
100isobaricInhPaplIsobaric levelhPaWMO
102meanSeamsAt mean sea level
103heightAboveSeahasSpecified altitude above mean sea levelAltitude in mWMO
105heightAboveGroundhagSpecified height above groundAltitude in mWMO
107sigmaSigma levelSigma value in 1/10000WMO
109hybridhyHybrid levelWMO
112depthBelowLandLayerdbl
113thetathIsentropic (theta) levelPotential temperature in KWMO
117potentialVorticitypvPotential vorticity surface10-9 K m2 kg-1 s-1WMO
192isothermZeroWetBulbisot0wb
200entireAtmosphereeaEntire atmosphere (considered as a single layer)WMO, vertically integrated
levelFreeConvectionlfcas heightAboveGround in GRIB1
levelNeutralBuoyancylnbas heightAboveGround in GRIB1

Harmonie GRIB1 code table 2 version 253 - Indicator of parameter

Below the indicator of parameter code table for the Harmonie model. It is based on the WMO code table 2 version 3 with local parameters added. Parameter indicators 128-254 are reserved for originating center use. Parameter indicators 000-127 should not be altered. In HARMONIE, radiation fluxes are assumed positive downwards (against the recommendation by WMO).

ParDescriptionSI Units
000Reservedn/a
001PressurePa
002Pressure reduced to MSLPa
003Pressure tendencyPa s-1
004Potential vorticityK m2 kg-1 s-1
005ICAO Standard Atmosphere reference heightm
006Geopotentialm2 s-2
007Geopotential heightgpm
008Geometrical heightm
009Standard deviation of heightm
010Total ozoneDobson
011TemperatureK
012Virtual temperatureK
013Potential temperatureK
014Pseudo-adiabatic potential temperatureK
015Maximum temperatureK
016Minimum temperatureK
017Dew-point temperatureK
018Dew-point depression (or deficit)K
019Lapse rateK m-1
020Visibilitym
021Radar spectra (1)-
022Radar spectra (2)-
023Radar spectra (3)-
024Parcel lifted index (to 500 hPa)K
025Temperature anomalyK
026Pressure anomalyPa
027Geopotential height anomalygpm
028Wave spectra (1)-
029Wave spectra (2)-
030Wave spectra (3)-
031Wind directionDegree true
032Wind speedm s-1
033u-component of windm s-1
034v-component of windm s-1
035Stream functionm2 s-1
036Velocity potentialm2 s-1
037Montgomery stream functionm2 s-1
038Sigma coordinate vertical velocitys-1
039Vertical velocityPa s-1
040Vertical velocitym s-1
041Absolute vorticitys-1
042Absolute divergences-1
043Relative vorticitys-1
044Relative divergences-1
045Vertical u-component shears-1
046Vertical v-component shears-1
047Direction of currentDegree true
048Speed of currentm s-1
049u-component of currentm s-1
050v-component of currentm s-1
051Specific humiditykg kg-1
052Relative humidity%
053Humidity mixing ratiokg kg-1
054Precipitable waterkg m-2
055Vapor pressurePa
056Saturation deficitPa
057Evaporationkg m-2
058Cloud icekg m-2
059Precipitation ratekg m-2 s-1
060Thunderstorm probability%
061Total precipitationkg m-2
062Large scale precipitationkg m-2
063Convective precipitationkg m-2
064Snowfall rate water equivalentkg m-2 s-1
065Water equivalent of accumulated snow depthkg m-2
066Snow depthm
067Mixed layer depthm
068Transient thermocline depthm
069Main thermocline depthm
070Main thermocline anomalym
071Total cloud cover%
072Convective cloud cover%
073Low cloud cover%
074Medium cloud cover%
075High cloud cover%
076Cloud waterkg m-2
077Best lifted index (to 500 hPa)K
078Convective snowkg m-2
079Large scale snowkg m-2
080Water temperatureK
081Land cover (1 = land, 0 = sea)Proportion
082Deviation of sea level from meanm
083Surface roughnessm
084Albedo%
085Soil temperatureK
086Soil moisture contentkg m-2
087Vegetation%
088Salinitykg kg-1
089Densitykg m-3
090Water run-offkg m-2
091Ice cover (1 = ice, 0 = no ice)Proportion
092Ice thicknessm
093Direction of ice driftDegree true
094Speed of ice driftm s-1
095u-component of ice driftm s-1
096v-component of ice driftm s-1
097Ice growth ratem s-1
098Ice divergences-1
099Snow meltkg m-2
100Significant height of combined wind waves and swellm
101Direction of wind wavesDegree true
102Significant height of wind wavesm
103Mean period of wind wavess
104Direction of swell wavesDegree true
105Significant height of swell wavesm
106Mean period of swell wavess
107Primary wave directionDegree true
108Primary wave mean periods
109Secondary wave directionDegree true
110Secondary wave mean periods
111Net short-wave radiation flux (surface)W m-2
112Net long-wave radiation flux (surface)W m-2
113Net short-wave radiation flux (top of atmosphere)W m-2
114Net long-wave radiation flux (top of atmosphere)W m-2
115Long-wave radiation fluxW m-2
116Short-wave radiation fluxW m-2
117Global radiation fluxW m-2
118Brightness temperatureK
119Radiance (with respect to wave number)W m-1 sr-1
120Radiance (with respect to wave length)W m-3 sr-1
121Latent heat fluxW m-2
122Sensible heat fluxW m-2
123Boundary layer dissipationW m-2
124Momentum flux, u-componentN m-2
125Momentum flux, v-componentN m-2
126Wind mixing energyJ
127Image data-
128Analysed RMS of PHI (CANARI)m2 s-2
129Forecasted RMS of PHI (CANARI)m2 s-2
130SW net clear sky radW m-2
131LW net clear sky radW m-2
132Latent heat flux through evaporationW m-2
133Mask of significant cloud amount0-1
134Icing index version 2-
135Icing indexCode table
136Pseudo satellite image, cloud top temperature (infrared)K
137Pseudo satellite image, water vapour brightness temperatureK
138Pseudo satellite image, water vapour br. temp. + correction for cloudsK
139Pseudo satellite image, cloud water reflectivity (visible)?
140Direct normal irradianceJ m-2
141Max icing growth index-
142Level of max wind speedm
143Level of max icingm
144Precipition TypeCode table
145CAT index- / %
146Bottom level of icingm
147Top level of icingm
148Helicopter Triggered ligthning Index-
149Transmittance-
150Level of max CAT indexm
151Max CAT index-
152Bottom level of CATm
153Top level of CATm
154Max Wind speedm s-1
155Available#
156Available#
157Available#
158Surface downward moon radiationW m-2
159ABrunt Vaisala frequencys-1
160CAPEJ kg-1
161AROME hail diagnostic%
162U-momentum of gusts out of the modelm s-1
163V-momentum of gusts out of the modelm s-1
164Max u-component in columnm s-1
165Convective inhibition (CIN)J kg-1
166MOCON out of the modelkg/kg s-1
167Lifting condensation level (LCL)m
168Level of free convection (LFC)m
169Level of neutral boyancy (LNB)m
170Brightness temperature OZ clearK
171Brightness temperature OZ cloudK
172Brightness temperature IR clearK
173Brightness temperature IR cloudK
174Brightness temperature WV clearK
175Brightness temperature WV cloudK
176Virtual potential temperatureK
177Max v-component in columnm s-1
178Available#
179Available#
180Available#
181Rainkg m-2
182Stratiform Rainkg m-2
183Convective Rainkg m-2
184Snowkg m-2
185Total solid precipitationkg m-2
186Cloud basem
187Cloud topm
188Fraction of urban landProportion
189Cloud base >3/8m
190Snow AlbedoProportion
191Snow densitykg/m3
192Water on canopykg/m2
193Soil icekg/m2
194Available#
195Gravity wave stress U-compN/m2
196Gravity wave stress V-compN/m2
197Available#
198Available#
199Vegetation type-
200TKEm2 s-2
201Graupelkg m-2
202Stratiform Graupelkg m-2
203Convective Graupelkg m-2
204Hailkg m-2
205Stratiform Hailkg m-2
206Convective Hailkg m-2
207Available#
208Available#
209Lightningflash h-1
210Simulated reflectivitydBz
211Wind power productionMW or MJ
212Pressure departurePa
213Vertical divergences-1
214UD_OMEGAms-1?
215DD_OMEGAms-1?
216UDMESHFRAC-
217DDMESHFRAC-
218PSHICONVCL-
219Surface albedo for non snow covered areasProportion
220Standard deviation of orography * gm2 s-2
221Anisotropy coeff of topography-
222Direction of main axis of topographyrad
223Roughness length of bare surface * gm2 s-2
224Roughness length for vegetation * gm2 s-2
225Fraction of clay within soilProportion
226Fraction of sand within soilProportion
227Maximum proportion of vegetationProportion
228Gust wind speedm s-1
229Albedo of bare groundProportion
230Albedo of vegetationProportion
231Stomatal minimum resistances/m
232Leaf area indexm2/m2
233Thetaprimwprim surface fluxKm/s
234Dominant vegetation index-
235Surface emissivity-
236Maximum soil depthm
237Soil depthm
238Soil wetnesskg/m2
239Thermal roughness length * gm2 s-2
240Resistance to evapotransirations/m
241Minimum relative moisture at 2 meters%
242Maximum relative moisture at 2 meters%
243Duration of total precipitationss
244Latent Heat SublimationW/m2
245Water evaporationkg/m2
246Snow sublimationkg/m2
247Snow history???
248A OZONEkg kg-1
249B OZONEkg kg-1
250C OZONEkg kg-1
251Surface aerosol seakg kg-1
252Surface aerosol landkg kg-1
253Surface aerosol sootkg kg-1
254Surface aerosol desertkg kg-1
255Missing valuen/a

SURFEX output Harmonie GRIB1 code table 2 version 001

Levels are used in the conversion of SURFEX output to GRIB to indicate tile/patch/type/level:

leveldescription
300Extra yet unknown SURFEX variables
301Fraction of each vegetation types on PATCH 1
302Fraction of each vegetation types on PATCH 2
303Fraction of each vegetation types cy43 (ECOCLIMAP-SG)
600Physiography fields?
720Sea ice
730Sea ice (TICE_LL)
755Precip
760Sea
770in addition to FLake (or instead of it)
780Flake
790Patch (*_P fields)
800ISBA
810Gridpoint average
820Surface boundary multi layer fields
830ISBA - patch 1 (X001*, open land)
840ISBA - patch 2 (X002*, forest)
950Town energy balance model (TEB)

A small selection of fields available in the SURFEX output files is shown below.

FA nameshortNameNCnamelvTiOPlevsTunitsdescription
FRAC_SEA#sftofhag32300ins0-1Fraction of sea
FRAC_WATER#sftlafhag33300ins0-1Fraction of water
FRAC_NATURE#sftnfhag34300ins0-1Fraction of nature
FRAC_TOWN#sfturfhag35300ins0-1Fraction of town
COVER001#lsm10insLAND SEA MASK
COVER002-COVER243##002-2430insECOCLIMAP I cover types
COVER255##2550insECOCLIMAP I MY_COVER type
COVER301-COVER573##001-254 & 001-0190insECOCLIMAP II cover types
ZS#oroghag80insmOro hgt.
SST#tosms110insKSST
SIC#siconcams910ins0-1SIC
T2M_SEA#tas_seahag11760insKT2m sea
Q2M_SEA#huss_seahag51760inskg kg-1Q2m sea
MER10M_SEA#vas_seahag34760insm s-1V10m sea
ZON10M_SEA#uas_seahag33760insm s-1U10m sea
T2M_WAT#tas_waterhag11772insKT2m water
Q2M_WAT#huss_waterhag51770inskg kg-1Q2m water
MER10M_WAT#vas_waterhag34770insm s-1V10m water
ZON10M_WAT#uas_waterhag33770insm s-1U10m water
DSNTISBA#sndhag660insmSnow depth
WSNTISBA#snwhag130inskg m-2Total snow reservoir
T2M_ISBA#tas_naturehag11802insKT2m isba
Q2M_ISBA#huss_naturehag51802inskg kg-1Q2m isba
X001T2M_P#tashag11832insKT2m of patch 1
X002T2M_P#tashag11842insKT2m of patch 2
T2M_TEB#tas_townhag11950insKT2m town
T2MMAX_TEB#tasmax_townhag15950maxKMax Temp for town
T2MMIN_TEB#tasmin_townhag16950minKMin Temp for town
TGL#tg_LLLhag11800+insKTemperature of soil layer L(isba)
WGL#wsa_LLLhag86800+insm3 m-3Liquid volumetric water content of soil layer L
WGIL#isa_LLLhag193800+insm3 m-3Frozen volumetric water content of soil layer L
WR#wrhag12800inskg m-2Liquid water retained by foliage (isba)
DGL#dsoil_LLLhag23300insmSoil depth of soil layer L

Harmonie GRIB1 code table 2 version 210

Used for aerosol fields

GRIB

NetCDF

diff --git a/previews/PR1153/ForecastModel/SingleColumnModel/Forcing/index.html b/previews/PR1153/ForecastModel/SingleColumnModel/Forcing/index.html new file mode 100644 index 0000000000..25c1029f1c --- /dev/null +++ b/previews/PR1153/ForecastModel/SingleColumnModel/Forcing/index.html @@ -0,0 +1,51 @@ + +Forcing · Harmonie wiki
GitHub

MUSC Forcing

From Eric Bazile: The fields SXXXFORC0001 –> SXXXFORC00NN in the initial file for MUSC are the atmospheric forcing without any rules for variables or advection etc ...

  • XXX = vertical levels
  • NN = number of forcing fields

So if you put for NN=1 the temperature and QV in 2, and the geostrophic wind ug (3) and Vg (4) and you want to force MUSC for 48h with a nudging for T and Q and a geostrophic wind you should add in the MUSC namelist 

NAMCT0
+   LSFORC=T
+   LSFROCS= FALSE ; default ONLY for surface forcing without SURFEX
+/   
+&NAMGFL
+   NGFL_FORC=4 ; number of atmospheric forcing fields
+/
+&NAMLSFORC
+  LGEOST_UV_FRC=.TRUE.,  ; geostrophic wind forcing
+  LMUSCLFA=.TRUE.,
+  NGEOST_U_DEB=3,   ; Ug is in position 3 in GFL_FORC
+  NGEOST_U_NUM=1,   ; ONLY 1 Ug available 
+  NGEOST_V_DEB=4,   ; Vg is in position 4 in GFL_FORC
+  NGEOST_V_NUM=1,   ; ONLY one Vg available
+ LT_NUDG=.TRUE.,    : Nudging for T
+ LQV_NUDG=.TRUE.,   ; Nudging for Qv
+ RELAX_TAUT=43200.  ; Relaxation time for Nudging for T
+ RELAX_TAUQ=43200.  ; same  for Q
+ NT_NUDG_NUM=1      ; Number of nudging profile for T 
+ NT_NUDG_DEB=1      ; Profile 1 used for the nudging of T
+ NQV_NUDG_NUM=1     ; Number of nudging profile for Q
+ NQV_NUDG_DEB=2     ; Profile 2 used for nudging Qv
+/

Here you can run MUSC for 1 day or 100 years with the same nudging profile and geostrophic wind !

So it is fully flexible BUT the user should know how the initial profile was created and which fields are in FORC00NN etc ....

After you can have several nudging profile (for several time) instead of one profile used for all the simulation. You just need to put the number of profile For ex you have 5 profiles for T for the nudging at 0, 6, 12 18 24. and if you put the T profile 0 in 1, etc ... the modified namelist

&NAMGFL
+   NGFL_FORC=8 ; number of atmospheric forcing fields
+/
+&NAMLSFORC
+  LGEOST_UV_FRC=.TRUE.,  ; geostrophic wind forcing
+  LMUSCLFA=.TRUE.,
+  NGEOST_U_DEB=7,   ; Ug is in position 3 in GFL_FORC
+  NGEOST_U_NUM=1,   ; ONLY 1 Ug available 
+  NGEOST_V_DEB=8,   ; Vg is in position 4 in GFL_FORC
+  NGEOST_V_NUM=1,   ; ONLY one Vg available
+ LT_NUDG=.TRUE.,    : Nudging for T
+ LQV_NUDG=.TRUE.,   ; Nudging for Qv
+ RELAX_TAUT=43200.  ; Relaxation time for Nudging for T
+ RELAX_TAUQ=43200.  ; same  for Q
+ NT_NUDG_NUM=5      ; Number of nudging profile for T 
+ NT_NUDG_DEB=1      ; Profile 1 used for the nudging of T
+ NQV_NUDG_NUM=1     ; Number of nudging profile for Q
+ NQV_NUDG_DEB=6     ; Profile 2 used for nudging Qv
+ NL_T_NUDG_TIME(1) = 0
+ NL_T_NUDG_TIME(2) = 21600
+NL_T_NUDG_TIME(3) = 43200
+NL_T_NUDG_TIME(4) = 64800
+NL_T_NUDG_TIME(5) = 86400
+/

and now you can not run MUSC more than 1 day ... if the time between the forcing profile is the same you can use *_FREQ instead of TIME ...

diff --git a/previews/PR1153/ForecastModel/SingleColumnModel/MUSC/index.html b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC/index.html new file mode 100644 index 0000000000..97bc89d5f0 --- /dev/null +++ b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC/index.html @@ -0,0 +1,73 @@ + +MUSC · Harmonie wiki
GitHub

MUSC

MUSC using the develop branch (CY46) in the git repository

If you find any issues with any of the instructions or scripts, feel free to notify Emily Gleeson (emily.gleesonATmet.ie) and Eoin Whelan (eoin.whelanATmet.ie)

Currently a "reference" test case, called musc_ref, works on ATOS, as well as the ARMCU cases (with and without SURFEX for both AROME and HARMONIE namelists) and the two microphysics-related cases (supercooled liquid) developed by Bjorg Jenny Engdahl in cycle 40.

Some instructions on how to use MUSC are included below. See here for some information on HARMONIE-AROME experiments using MUSC but note that the scripts have changed somewhat since that paper was written.

Set up MUSC

  1. Get the code:

    mkdir -p $SCRATCH/harmonie_releases/git/HCY46
+cd $SCRATCH/harmonie_releases/git/HCY46
+git clone git@github.com:Hirlam/Harmonie.git
+cd Harmonie
+git checkout dev-CY46h1 
+# If you already have a clone of the code but want to update it to the latest version, 
+use "git pull" rather than "git branch".

  2. Set up a MUSC experiment using HARMONIE scripting

    In this example the ECMWF.atos config file is used. 

    mkdir -p $HOME/hm_home/test_0001
+cd $HOME/hm_home/test_0001
+$SCRATCH/harmonie_releases/git/HCY46/Harmonie/config-sh/Harmonie setup -r $SCRATCH/harmonie_releases/git/HCY46/Harmonie/ -h ECMWF.atos

  3. Compile your experiment (still in $HOME/hm_home/test_0001)

    $SCRATCH/harmonie_releases/git/HCY46/Harmonie/config-sh/Harmonie install BUILD_WITH=cmake
+# Note that for the ARMCU cases cmake needs FFT modifications (not yet committed by Yurii)

  4. Some MUSC specific settings including copying over scripts and a check that Harmonie setup has been run

    $SCRATCH/harmonie_releases/git/HCY46/Harmonie/util/musc/scr/musc_setup.sh -r $SCRATCH/harmonie_releases/git/HCY46/Harmonie/

  5. Generate your namelist, unless you're using an idealised case with pre-defined namelists (so for ARMCU* you do not generate the namelists for example). If you wish to change the radiation scheme (RADSCHEME- RAYFM (IFS) or RAY (ACRANEB2)) or how you use aerosols (BDAER - cams or none), you need to edit ecf/configexp.h in your expt before running muscnamelist.sh. For using NRT aerosols, they need to be included in your input files already e.g. the MUSCIN* files should come from a 3D NRT aerosol expt.

    cd $HOME/hm_home/test_0001
+./musc_namelist.sh -h
+./musc_namelist.sh -l <length of run> -i <the ID name on the generated namelist files e.g. DEF> 
+                     -[N nudging - optional]

  6. Get a copy of the input files

    cd $SCRATCH
+retrieve the input files from https://github.com/Hirlam/HarmonieMuscData
  • Note that if you need to do experiments with 2 patches etc, ensure you derive some MUSC input files yourself using 3D HARMONIE-AROME files run with 2 patches. MUSC*REFL65* input files have only 1 patch. Changing MUSC namelists won't enable 2 patch output from a MUSC run.

Run MUSC

Musc_ref

The reference test is a X-hr experiment (change CSTOP in musc_namelist.sh if you wish to change the run length) and produces Out *lfa files for each model time-step of the time period. ICM* files are produced at each hour.

  1. Run your experiment

    cd $HOME/hm_home/test_0001
+./musc_run.sh -h
+./musc_run.sh -d $SCRATCH/muscCY46InputData/musc_ref -n REFL65 -i DEF [ -e ECOCLIMAP_PATH]
+# optional path for ECOCLIMAP data may be given. For musc_ref -i must be given as no 
+# namelists are provided with this experiment and must be generated before musc_run.sh 
+# is executed. For the idealised cases, if -i is not specified -i becomes the name of 
+# the idealised case once the namelist files are copied to $HOME/hm_home/test_0001 e.g. 
+# for armcu the namelist files become namelist_atm_armcu etc.
+

ARMCU

** Note that these will not work until we can compile with FFTW.

This is an idealized SCM test case, the "Sixth GCSS WG-1 case (ARM—Atmospheric Radiation Measurement)", focussing on the diurnal cycle of cumulus clouds over land (Brown et al, 2002, Lenderink et al, 2004. The input files and namelist settings have been taken from /src/validation/mitraille/namelist/L1ARO but the atmospheric namelist needed editing for use in our environment. Atmospheric and surface forcings are included in the MUSC input files and the namelists in the util/musc/test/armcu directory are set up specifically for this case and are hence not edited by musc_run.sh.

  1. Run your experiment
    cd $HOME/hm_home/test_0001
+./musc_run.sh -h
+./musc_run.sh -d $HOME/muscCY46InputData/ARMCU_HAR -n ARMCU (There are now 4 ARMCU experiments to chose from e.g. ARMCU_EB and ARMCUs_EB are ones that use AROME namelists, ARMCU_Har and ARMCUs_Har use HARMONIE-AROME namelists. Currently, the results are a bit different.)

MUSC Output

DDH Toolbox

The outputs from a MUSC run are small files in lfa format. DDH tools can be used to handle these files.

To download the DDH toolbox, go to https://www.umr-cnrm.fr/gmapdoc/spip.php?article19 and download the tarball. Untar it and within the tools folder run ./install. Now the various "tools" are compiled. For example lfaminm $file shows you the max, min and mean of all the output variables in a file. lfac $file $var shows the value(s) of $var in $file e.g. lfac Out.000.0000.lfa PTS shows you surface temperature. In order to be able to use the plotting scripts below, you'll need the lfac tool in your path.

For example on ATOS, I set the following paths (may differ a bit for you depending on where you downloaded the ddhtools to). Perhaps add to your .bashrc file:

  • export PATH=$HOME/ddhtoolbox/tools/lfa/:$PATH
  • export DDHI_BPS=$HOME/ddhtoolbox/ddh_budget_lists/
  • export DDHI_LIST=$HOME/ddhtoolbox/ddh_budget_lists/conversion_list

Plot output time-series from the MUSC output lfa files

cd $HOME/hm_home/test_0001
+./musc_plot1Dts.sh -d <musc-data-dir>
+
+## python based plotting scripts and "default" png plots 
+## will be produced in $HOME/hm_home/test_0001/plots1Dts
+

Extract output from the MUSC output ICM* fa files and plot time-series using these

  • By default you get ICM* files on the hour - you can change the namelist should you require a higher frequency.
cd $HOME/hm_home/test_0001
+./musc_convertICM2ascii.sh -l <number_hours_in_expt_run> -f <path_to_your_musc_output>
+
+## Generates an OUT ascii file for each atm and sfx ICM* input file
+## ICM files have additional input not in lfa files e.g. TKE which is useful - also similar to 3D outputs
+
+./musc_plot_profiles_ICMfiles.sh -d <data-dir> -p <parameter-model-level> -l <run_length_hours>
+

Creating your own input files

A converter script, musc_convert.sh, is available to extract a MUSC column from a model state file (ICMSHHARM+HHHH). musc_convert.sh is a Bash script that calls gl_grib_api to carry the data conversions.

Extract a MUSC input file

cd $HOME/hm_home/test_0001
+./musc_convert.sh -d $HOME/muscCY46InputData/harm_arome/ -c extr3d -n REFIRL -l 53.5,-7.5 -t 6
+mkdir $HOME/muscCY46InputData/musc_refirl
+cp MUSCIN_REFIRL_atm.fa MUSCIN_REFIRL_sfx.fa MUSCIN_REFIRL_pgd.fa $HOME/muscCY46InputData/musc_refirl/

Convert MUSC FA to MUSC ASCII

cd $HOME/hm_home/test_0001
+./musc_convert.sh -c fa2ascii -d $HOME/muscCY46InputData/musc_refirl -n REFIRL
+ls -ltr
+cp MUSCIN_REFIRL_atm.ascii MUSCIN_REFIRL_sfx.ascii $HOME/muscCY46InputData/musc_refirl/

Convert MUSC ASCII to MUSC FA

cd $HOME/hm_home/test_0001
+./musc_convert.sh -c ascii2fa -d $HOME/muscCY46InputData/musc_refirl -n REFIRL
+ls -ltr

Forcing in MUSC

  • musc_convert.sh includes forcing for temperature (11), humidity (51) and wind speed (32) .

You may edit the following lines to include other forcing:

  PPPKEY(1:4)%shortname  = 'ws','#','#','#',
+  PPPKEY(1:4)%faname  = '#','SNNNFORC001','SNNNFORC002','SNNNFORC003'
+  PPPKEY(1:4)%levtype = 'hybrid','hybrid','hybrid','hybrid',
+  PPPKEY(1:4)%level   = -1,-1,-1,-1,
+  PPPKEY(1:4)%pid     = 32,-1,-1,-1,
+  PPPKEY(1:4)%nnn     = 0,0,0,0,
+  PPPKEY(1:4)%lwrite  = F,T,T,T,
+  IFORCE              = 11,51,32,
  • Further information on forcing is available here: MUSC/Forcing

MUSC local adaptation

KNMI workstations

The following files were added to make it possible to run MUSC on KNMI workstations:

config-sh/config.LinuxPC-MPI-KNMI
+config-sh/submit.LinuxPC-MPI-KNMI
+util/makeup/config.linux.gfortran.mpi-knmi

for use with the setup script:

./musc_setup.sh [...] -c LinuxPC-MPI-KNMI

In addition, the following workaround has to be applied to be able to run the REFL65 test case:

$ git diff src/ifsaux/utilities/echien.F90
+diff --git a/src/ifsaux/utilities/echien.F90 b/src/ifsaux/utilities/echien.F90
+index 55d5ce94e..694c87d83 100644
+--- a/src/ifsaux/utilities/echien.F90
++++ b/src/ifsaux/utilities/echien.F90
+@@ -532,7 +532,7 @@ IF((KINF == 0).OR.(KINF == -1).OR.(KINF == -2).OR.(KINF == -3)) THEN
+            & 'LEVEL ',JFLEV,' : ',&
+            & 'FILE = ',ZVALH(JFLEV), ' ; ARGUMENT = ',PVALH(JFLEV)
+           IERRA=1
+-          IERR=1
++!         IERR=1
+         ENDIF
+         IF(ABS(ZVBH(JFLEV)-PVBH(JFLEV)) > PEPS) THEN
+           WRITE(KULOUT,*) ' VERTICAL FUNCTION *B* MISMATCH ON ',&

Then you are ready to compile:

  • remove the file experimentislocked from the experiment directory.
  • remove the directory with your previous build (if any).
  • start the compile with the musc_compile.sh script

When starting the MUSC run, add the PATH to mpirun and the libraries:

export PATH=$PATH:/usr/lib64/openmpi/bin
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/openmpi/lib
+./musc_run.sh [...]

MUSC FAQ

  1. If there is an error, what files do I look in? NODE.001_01 and lola in your output directory.

  2. How to I handle the output files? The output files are of the form Out.XXX.XXXX and appear in your output directory. There are in lfa format and can be handled using ddh tools. See the bash script musc_plot1Dts.sh for ideas. There are also ICM*lfa output files that are also handy for plotting profiles - use musc_convertICM2ascii.sh to convert these files to ASCII and musc_plot_profiles_ICMfiles.sh to plot some profiles e.g. TKE, cloud liquid etc.

  3. I ran a different idealised case but did not get different results? The likely reason for this is that you did not delete the namelists from your experiment directory. If the namelists are there, the musc_run.sh script neither creates them nor copies them from the repository.

  4. How do I create a new idealised case? This is not straightforward but the following was used to create the ASTEX cases in cy43 using info from cy38: https://www.overleaf.com/7513443985ckqvfdcphnng

  5. How can I access a list of MUSC output parameters? Ensure you have the ddhtoolbox compiled. Then use lfaminm $file on any of your output files and it will show what is there. To look at a particular variable try lfac $file $parameter e.g. lfac $file PTS (for surface temperature). You can use cat to copy the values to an ASCII file for ease of use (e.g. lfac $file PTS > $ASCIIfile).

  6. Is MUSC similar to the full 3D model version - is the physics the same? Yes, if you checkout develop then you have MUSC up-to-date with that.

  7. Do I need to recompile the model if I modify code? Yes, if you modify code in a single file you must recompile the code but do not delete the original compiled model first. This will recompile relatively quickly. If you modify code in multiple files and you change what variables are passed between files, then you must delete your original compiled model and recompile the code. This will take longer to recompile.

MUSC variable names

A list of variable names found in the MUSC lfa output files can be found here. Please note that this is not a complete list of MUSC output parameters (yet). The variables in regular ICMSH... fa output are documented here

Outstanding Issues

  1. ARMCU and Jenny's cases run without surface physics, radiation etc and hence return NANs in apl_arome. To circumvent this on ECMWF, we needed to compile less strictly. This needs to be investigated further.
  2. The ASTEX cases currently do not run on ECMWF but work perfectly at Met Eireann - debugging needed.

MUSC using EMS

These instructions have moved to MUSC EMS

diff --git a/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_EMS/index.html b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_EMS/index.html new file mode 100644 index 0000000000..583db3db25 --- /dev/null +++ b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_EMS/index.html @@ -0,0 +1,58 @@ + +MUSC EMS · Harmonie wiki
GitHub

Run MUSC with EMS

These instructions require the use of dev-CY46h1.

If you find any issues with any of the instructions or scripts, feel free to notify Emily Gleeson (emily.gleesonATmet.ie) and Eoin Whelan (eoin.whelanATmet.ie)

In this section a description of how to install and run MUSC using EMS is provided. This is based on compilation and execution in a Ubuntu 20.04 container (tested using Apptainer on the ECMWF Atos HPC) and use of the EMS system to execute MUSC and convert the output to NetCDF. EMS is primarily developed by Romain Roehrig (Météo France) https://github.com/romainroehrig/EMS.

Start your container

  1. Log in to hpc-login on the Atos
  2. Load the Apptainer module and start the Ubuntu 20.04 container:
module load apptainer
+/home/dui/musc_ubuntu.sif

Further details concerning Apptainer on the Atos are available here

Compile the code

I (Eoin) have not had time to sort out compilation using CMake but the following instructions provide a minimalist approach to compile the code using makeup. These instructions depend on you having a clone or copy of Harmonie (dev-46h1) in your $PERM directory on Atos where GHUSER is your Github username.

cd $PERM
+GHUSER=your_github_username
+git clone git@github.com:$GHUSER/Harmonie.git harmonie_git/$GHUSER/dev-CY46h1 -b dev-CY46h1
+
+(Ensure that your fork is up-to-date before doing this or else take the code from the main
+CY46 repo. Note that to run GABLS1 you need to use two updated surfex subroutines `tszo.F90`
+and `read_pgd_tsz0_parn.F90`. You can copy these files from util/musc/patches as follows:
+
+cp $PERM/harmonie_git/$GHUSER/dev-CY46h1/util/musc/patches/tsz0.F90 $PERM/harmonie_git/$GHUSER/dev-CY46h1/src/surfex/SURFEX/tsz0.F90
+cp $PERM/harmonie_git/$GHUSER/dev-CY46h1/util/musc/patches/read_pgd_tsz0_parn.F90 $PERM/harmonie_git/$GHUSER/dev-CY46h1/src/surfex/SURFEX/read_pgd_tsz0_parn.F90
+or by using git apply gabls.patch).
+

Compile the code in your code checkout/copy:

cd $PERM/harmonie_git/$GHUSER/dev-CY46h1
+EXP=$(basename $(git symbolic-ref --short HEAD))
+. config-sh/config.ubuntu20_nompi
+util/makeup/build -n 4 config.${HARMONIE_CONFIG}
+mkdir ${EXP}
+mv makeup.${HARMONIE_CONFIG} bin configlog.1 makelog.1 ${EXP}/

Install EMS

The following instructions provide details on how to download a HIRLAM version of EMS and install locally in your own account:

cd $HOME
+git clone git@github.com:ewhelan/EMS.git -b hirlam EMS_git/EMS
+cd EMS_git/EMS/
+mkdir build
+cd build/
+export EMS_DIR=$HOME/metapp/ems
+cmake .. -DCMAKE_INSTALL_PREFIX=$EMS_DIR && make && ctest && make install
+export PATH=${EMS_DIR}/bin:$PATH
+export PYTHONPATH=${EMS_DIR}
Note

For GABLS1 in prep_nam_sfx.py_orig the following lines need to be commented out:

nam[nn]['XUNIF_CLAY'] = ['1.']
+nam[nn]['XUNIF_SAND'] = ['0.']
+nam[nn]['XUNIF_RUNOFFB'] = ['0.5']
+
+nam[nn]['XHUG_SURF'] = ['-10.']
+nam[nn]['XHUG_ROOT'] = ['-10.']
+nam[nn]['XHUG_DEEP'] = ['-10.']
+

Run EMS

Here are some instructions on how to use EMS to execute idealised cases

export EMS_DIR=$HOME/metapp/ems
+export PATH=${EMS_DIR}/bin:$PATH
+export PYTHONPATH=${EMS_DIR}
+mkdir $HOME/ems_exec
+cd $HOME/ems_exec
+cp ${EMS_DIR}/share/config/config_46h1_HARMAROME_DEV.py .
+### edit his file to point to your binaries
+ems_list_cases.py
+export PYTHONPATH=$(pwd):$PYTHONPATH
+# MUSC.py -config config_46h1_HARMAROME_DEV.py -case $CASE  -subcase $SUBCASE
+MUSC.py -config config_46h1_HARMAROME_DEV.py -case ARMCU  -subcase REF

Output and log file can be found in $HOME/ems_exec/simulations/46t1/46h1_HARMAROME_DEV/${CASE}/${SUBCASE}

EMS Cases

The table below lists the cases available in EMS and results of early tests.

CaseStatusReference(s)
GABLS1 REF❌[1]
GABLS1 MESONH❌[1]
GABLS4 STAGE3❌[1]
GABLS4 STAGE3-SHORT❌[1]
AYOTTE 00SC✔️
AYOTTE 00WC✔️
AYOTTE 03SC✔️
AYOTTE 05SC✔️
AYOTTE 05WC✔️
AYOTTE 24SC✔️
IHOP REF✔️
SCMS REF✔️
RICO SHORT✔️
RICO MESONH✔️
ARMCU REF✔️
ARMCU MESONH✔️
ARMCU E3SM✔️
BOMEX REF❌[2]
MPACE REF✔️
FIRE REF✔️
SANDU REF✔️
SANDU FAST✔️
SANDU SLOW✔️
AMMA REF✔️
DYNAMO NSA3A✔️Takes a long time!
DYNAMO NSA3A_D1✔️
DYNAMO NSA3A_D30❌[3]
DYNAMO NSA3A_MJO1✔️

Analysing results using Atlas

Still in the Apptainer container

cd $HOME
+git clone git@github.com:ewhelan/SCM-atlas.git -b hirlam SCM-atlas_git/ewhelan/hirlam
+export PATH=$HOME/SCM-atlas_git/ewhelan/hirlam/apptools:$PATH
+export PYTHONPATH=$HOME/SCM-atlas_git/ewhelan/hirlam:$PYTHONPATH
+export ATLAS_CONFIG=""
+mkdir -p $HOME/Atlas
+cd $HOME/Atlas
+mkdir config
+cp $HOME/SCM-atlas_git/ewhelan/hirlam/examples/config/config_HARM.py config/
+### edit config/config_HARM.py
+run_atlas1d.py -config config/config_HARM.py
  • 1Issue with SURFEX namelist
  • 2Python issue L241 $EMS_DIR/ems/prep_init_forc_atm_GMAP.py
  • 3Missing data_input.nc
diff --git a/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_vars/index.html b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_vars/index.html new file mode 100644 index 0000000000..f088f42727 --- /dev/null +++ b/previews/PR1153/ForecastModel/SingleColumnModel/MUSC_vars/index.html @@ -0,0 +1,6 @@ + +MUSC vars · Harmonie wiki
GitHub

Variable names for MUSC output

List of parameters copied from variable_list.csv

short namevariable namelong nameunit
lwdwPFRTHDSlong wave downward radiation at surfaceW/m2
lwupPFRTHlong wave upward radiation at surfaceW/m2
swdwPFRSODSshort wave downward radiation at surfaceW/m2
swupPFRSOshort wave upward radiation at surfaceW/m2
shfPFCSsensible heat fluxW/m2
lhfPFCLNlatent heat fluxW/m2
evapZLH_fluxevaporation+sublimation fluxmm/day
evap2PFEVLevaporation+sublimation fluxmm/day
ustarZUSTARfriction velocitym/s
rainPREC_TOTprecipitation (liq+sol) ratemm/day
psurfPAPRSsurface PressurePa
hpblPCLPHboundary layer heightm
hpbl2KCLPHboundary layer heightm
tsurfPTSsurface temperatureK
t2mPTCLS2 m temperatureK
q2mPQCLS2 m specific humidityKg/Kg
rh2mPRHCLS2 m relative humidity[0-100]
u10mPUCLS1 0m u-componentm/s
v10mPVCLS10m v-componentm/s
t3mPT_03temperature at 3.30 meter above the surfaceK
q3mPQ_03specific humidity at 3.30 meterKg/Kg
rh3mPRH_03relative humidity at 3.30 meter[0-100]
u3mPU_03u-component at 3.30 meterm/s
v3mPV_03v-component at 3.30 meterm/s
etc
t42mPT_42temperature at 41.90 meter above the surfaceK
q42mPQ_42specific humidity at 41.90 meterKg/Kg
rh42mPRH_42relative humidity at 41.90 meter[0-100]
u42mPU_42u-component at 41.90 meterm/s
v42mPV_42v-component at 41.90 meterm/s
ccPCLCTtotal cloud cover fraction0 1
tsurfPTSSurface temperatureK
albPALBHAlbedo[0-1]
alb_surfTALB_ISBAsurface albedo-
z0mPGZ0Momentum roughness lengthm
z0hPGZ0HHeat roughness lengthm
emisPEMISsurface emissivity[0-1]
emisEMISsurface emissivity[0-1]
zfPAPHIFAltitude of layer mid-points at t=0 (full-level)m
pfPAPRSFPressure of layer mid-points at t=0 (full-level)Pa
tPTtemperatureK
thTHETApotential temperatureK
qPQspecific humiditykg/kg
uPUzonal wind componentm/s
vPVmeridional wind componentm/s
ugeoZFUGEOu-component geostrophic windm/s
vgeoZFVGEOv-component geostrophic windm/s
dudt_lsZFUu-component advectionm/s/s
dvdt_lsZFVv-component advectionm/s/s
dtdt_lsZFTtemperature advectionK/s
dqdt_lsZFQmoisture advectionKg/Kg/s
wZWvertical movementm/s
zhhPAPHIheight of half levelm
phhPAPRSpressure of half levelPa
kmZKMEddy diffusivity momentumm2/s
khZKHEddy diffusivity momentumm2/s
mfZMF_shalmassfluxKg/m2/s
dT_dt_radZDTRADtemperature tendency from radiationK/d
TKEPECTturbulent kinetic energy$m^2/s^2$
shearZPRDYshear production$m^2/s^3$
buoyZPRTHbuoyancy production$m^2/s^3$
transZDIFFtotal transport$m^2/s^3$
dissiZDISSdissipation$m^2/s^3$
diff --git a/previews/PR1153/ForecastModel/WindFarms/index.html b/previews/PR1153/ForecastModel/WindFarms/index.html new file mode 100644 index 0000000000..d466f2442c --- /dev/null +++ b/previews/PR1153/ForecastModel/WindFarms/index.html @@ -0,0 +1,144 @@ + +Wind Farm Parameterisation · Harmonie wiki
GitHub

Documentation for wind farm parameterisation

Natalie Theeuwes & Bert van Ulft<br> contact: Natalie.Theeuwes@knmi.nl

Introduction

We've implemented the Fitch et al. (2012) scheme in HARMONIE-AROME. First implemented in CY40 and evaluated for 1 year, 2016. Results are published in this paper: (van Stratum et al., 2022) Afterwards it has been moved to CY43 and run for 3 year (2019-2021) and evaluated.

Implementation in CY46

Switching on parameterisation

To switch the parameterisation on go to ecf/config_exp.h and set WINDFARM="yes". This will make the necessary switch to the namelist using the scr/forecast_model_settings.sh

# Fitch et al. (2012) wind turbine parametrization
+export LWINDFARM=.FALSE.
+if [ "$WINDFARM" = yes ]; then
+    LWINDFARM=.TRUE.
+    ...
+fi

In nam/harmonie_namelists.pm in the namelist in the %arome=( NAMPHY=>{ the switch for the wind farm paremeterisation should be located: 'LWINDFARM' => $ENV{LWINDFARM},

Once this switch in ecf/config_exp.h the code will look for a directory called WFP_input_files in the directory of the experiment. This should include input text files for the wind farm parameterisation.

Code

The input files are read in in src/arpifs/setup/su0yomb.F90 which calls the setup of the wind farm parameterisation src/arpifs/setup/suwindfarm.F90:

!*    Initialize wind farm scheme
+IF (LWINDFARM) THEN
+    WRITE(NULOUT,*) '---- Set up wind farms --',CLINE
+    CALL SUWINDFARM(YDGEOMETRY)
+ENDIF

The setup routine allocates the turbines on each BLK and it's properties (i.e., radius, hub height, location, type), plus it allocates the power and thrust curves for each turbine type. src/arpifs/setup/suwindfarm.F90 uses:

  • src/arpifs/setup/suwindfarm_rc.F90 - to read the coordinate file,

  • src/arpifs/setup/suwindfarm_rt.F90 - to read the turbine type files, and

  • src/arpifs/utility/skip_comments.F90 - used to skip comments in the .tab files.

The wind farm parameterisation is called in src/arpifs/phys_dmn/apl_arome.F90 :

!    ------------------------------------------------------------------
+!     13 - CALL WIND FARM (DRAG/TKE-prod) PARAMETERISATON
+!    ------------------------------------------------------------------
+
+IF (LWINDFARM) THEN
+    CALL WINDFARM(YDGEOMETRY%YREGEO,KBL,KLON,KLEV,&
+                & PAPHIM,PAPHIFM,POROG,PUM,PVM,PDT,&
+                & PCWFP,PWFPA,PTENDU,PTENDV,PTENDTKE)
+ENDIF

The wind farm parameterisation subroutine is located in src/arpifs/phys_dmn/windfarm.F90. The parameterisation loops over each turbine in KBL and adjust the tendencies and power production.

The U, V and TKE tendencies are changed in by this call. In addition, we output two new variables:

  1. PCWFP - accumulated wind farm power production

  2. PWFPA - instantaneous wind farm power production

These are passed through the CFU (accumulated) and XFU (instantaneous) thingy's to the FA file output.

Input files

There are two types of input files:

  1. wind_turbine_coordinates.tab there should be only one file with the location of all individual turbines, the coordinates given in WG84, turbine type, radius, and hub height. This file can look like:
#     lon          lat          type          r            z      
+        6.2031     53.4072         999            8           25
+        5.2345     52.7387         999            8           31
+        5.9171     53.3762         999            8           25
+        5.5033     53.1913         999            8           25
+        5.9415     52.9295         999            8           31
+        5.2454     52.7327         999            8           31
+        6.3057     53.0353         999            8           31
+        4.3082     51.5722         999            8           31
+        5.7044     53.2521         999            8           31
+        5.7689     53.1922         999            8           31
+        6.0345     53.3543         999            8           25
+        5.7798     53.3212         999            8           25
+        5.6054     52.7066         999            8           31
+        5.5258     53.2502         999            8           25
+        5.5189     53.2468         999            8           31
+        5.6110     52.7242         999            9           31
+        4.6530     52.7281         999            8           25
+        5.7255     53.1632         999            9           31
+        4.6861     52.7434         999            8           25
+        5.3789     52.3055         999            9           25
+        5.4726     53.1554         999            8           31
+        6.5278     53.2488         999            8           31
+        6.3006     53.3322         999            8           31
+        5.8826     53.3058         999            8           31
  1. wind_turbine_XXX.tab Each turbine type should have their own individual file, including the thrust and power curves, with additional info e.g. the name of the type hub height and radius. Note:: Only $C_T$ and $C_P$ are read in, the remainder of the info is for reference only. Hub height and radius are read in from the wind_turbine_coordinates.tab file. The XXX is the turbine type number under the column type in wind_turbine_coordinates.tab. A wind_turbine_XXX.tab file can look like:
# SWT-3.6-120 (z=82 m, D=120 m)
+#    r (m)        z (m)      cT_low (-)  cT_high (-) 
+    60.0000     82.0000       0.0480      0.0480
+#   U (m/s)       cP (-)       cT (-)   
+     3.0000      0.0000       0.0000
+     4.0000      0.3630       0.8580
+     5.0000      0.4050       0.8580
+     6.0000      0.4240       0.8580
+     7.0000      0.4320       0.8570
+     8.0000      0.4350       0.8580
+     9.0000      0.4360       0.8570
+    10.0000      0.4200       0.8040
+    11.0000      0.3690       0.6070
+    12.0000      0.2980       0.4180
+    13.0000      0.2360       0.3160
+    14.0000      0.1890       0.2480
+    15.0000      0.1540       0.2010
+    16.0000      0.1270       0.1650
+    17.0000      0.1060       0.1380
+    18.0000      0.0890       0.1170
+    19.0000      0.0760       0.1000
+    20.0000      0.0650       0.0870
+    21.0000      0.0560       0.0760
+    22.0000      0.0490       0.0670
+    23.0000      0.0430       0.0600
+    24.0000      0.0380       0.0530
+    25.0000      0.0330       0.0480
The `cT_low (-)  cT_high (-)` indicate the thrust coefficient used
+when the turbine is switched off, in either low or very high wind
+speed conditions.

At the moment the directory with input files is set in Env_system: 

    export WINDFARM_DATA_PATH=...

The coordinate file is set in ecf/config_exp.h as:

    # File with coordinates and properties of wind turbines
+    WINDFARM_COORDS_FILE=$WINDFARM_DATA_PATH/wind_turbine_coordinates_${DOMAIN}_@YYYY@.tab

The forecastmodelsettings.sh script creates links to the input files in the working directory. In research running mode the script will abort if the input files are not found. If RUNNING_MODE==operational, if the coordinate file for that DTG is not found (e.g. to avoid crashes in operations at New Year's eve), the script searches back up to 1 year for an alternative, previous file and uses that one instead. If no suitable file is found the wind farm parameterisation will be switched off (WINDFARM=no; LWINDFARM=.FALSE.). In both cases this will be logged in the severe_warnings.txt file.

Some python code to create the coordinate files from a pandas dataframe:

# Write coordinates/types to input file HARMONIE
+f = open('wind_turbine_coordinates_2022.tab', 'w')
+f.write('# {0:^12s} {1:^12s} {2:^12s} {3:^12s} {4:^12s}\n'.format('lon','lat','type','r','z'))
+for i in range(len(df.index)):
+    f.write('{0:11.4f} {1:11.4f} {2:11d} {3:12d} {4:12d}\n'.format(df.lon.iloc[i], 
+            df.lat.iloc[i], df.type.iloc[i], int(df.r.iloc[i]), int(df.z.iloc[i])))

NOTE!: When creating the wind_turbine_coordinates.tab files all turbines must be within the domain. This is not done in the code. All turbines outside the domain will accumulate in the edge cells of the domain. Easiest way to do this is in the preprocessing. Like using (with turbines in a pandas dataframe):

grid = xr.open_dataset('../common_data/Harmonie_grid.nc')
+hm_lon  = grid['lon'].values
+hm_lat  = grid['lat'].values
+maxlat = hm_lat.shape[0]-1
+maxlon = hm_lat.shape[1]-1
+# remove turbines beyond the boundaries of the HARMONIE domain
+for n in np.arange(len(df.index)):
+    j,i = np.unravel_index(np.sqrt((hm_lon-df.Longitude.iloc[n])**2 
+            + (hm_lat-df.Latitude.iloc[n])**2).argmin(), hm_lon.shape)
+    if ( (j == 0) | (j >= maxlat) ):
+        # set longitude to NaN's
+        df.Longitude.iloc[n] = np.nan
+    elif ( (i == 0) | (i>=maxlon) ):
+        # set longitude to NaN's
+        df.Longitude.iloc[n] = np.nan
+df.dropna(subset=['Longitude'], how='all', inplace=True)

For the creation of the turbine type files wind_turbine_XXX.tab, the following python function can be used:

def write_harmonie_turbine_input(tid, name, zhub, D, u, cp, ct):
+    """
+    Write the turbine specifications in the correct input format for HARMONIE
+    """
+    
+    print('Writing turbine input file for {0} - ID = {1:2d} (zhub = {2:.0f} m,
+            D = {3:.0f} m)'.format(name, tid, zhub, D))
+
+    f = open('wind_turbine_{0:03d}.tab'.format(tid), 'w')
+    f.write('# {0} (z={1:.0f} m, D={2:.0f} m)\n'.format(name, zhub, D))
+    f.write('# {0:^12s} {1:^12s} {2:^12s} {3:^12s}\n'.format('r (m)','z (m)',
+                'cT_low (-)','cT_high (-)'))
+    f.write('{0:11.4f} {1:11.4f}  {2:11.4f} {3:11.4f}\n'.format(D/2., zhub, 
+                ct[-1], ct[-1]))
+    f.write('# {0:^12s} {1:^12s} {2:^12s}\n'.format('U (m/s)','cP (-)','cT (-)'))
+    for i in range(u.size):
+        f.write('{0:11.4f} {1:11.4f}  {2:11.4f}\n'.format(u[i], cp[i], ct[i]))
+    f.close()

Output

For the conversion to GRIB1 of the two new variables, we use:

#Wind power production, accumulated
+'253211' = {
+        table2Version = 253 ;
+        indicatorOfParameter = 211 ;
+        timeRangeIndicator = 4 ;
+        }
+#Wind power production, instantaneous
+'253211' = {
+        table2Version = 253 ;
+        indicatorOfParameter = 211 ;
+        timeRangeIndicator = 0 ;
+        }

And for the conversion to GRIB2, we use:

#Wind power production, accumulated
+'253211' = {
+        discipline = 0 ;
+        parameterCategory = 2 ;
+        parameterNumber = 39 ;
+        typeOfStatisticalProcessing = 1 ;
+        centre = 94 ;
+        editionNumber = 2 ;
+        interpretationOfNumberOfPoints = 0 ;
+        subCentre = 255 ;
+        }
+#Wind power production, instantaneous
+'253211' = {
+        discipline = 0 ;
+        parameterCategory = 2 ;
+        parameterNumber = 39 ;
+        centre = 94 ;
+        editionNumber = 2 ;
+        interpretationOfNumberOfPoints = 0 ;
+        subCentre = 255 ;
+        }

For both GRIB 1 and GRIB 2:

  1. Wind power production, accumulated:

    • name: 'Wind power production, accumulated'
    • paramId: '253211'
    • shortName: 'wfpower_acc'
    • units: 'MJ'

  2. Wind power production, accumulated:

    • name: 'Wind power production, instantaneous'
    • paramId: '253211'
    • shortName: 'wfpower_ins'
    • units: 'MW'
diff --git a/previews/PR1153/Observations/Aeolus/index.html b/previews/PR1153/Observations/Aeolus/index.html new file mode 100644 index 0000000000..f001b42b20 --- /dev/null +++ b/previews/PR1153/Observations/Aeolus/index.html @@ -0,0 +1,9 @@ + +Aeolus · Harmonie wiki
GitHub

Aeolus, HLOS wind

short overview

Aeolus was an ESA Earth Explorer mission, carrying a Doppler wind lidar that measured the vertical profile of winds. Aeolus was launched in August 2018 and safely re-entered over Antarctica in July 2023. The period of usable data is from 31 August 2018 to 30 April 2023

Aeolus winds come in two different versions, Mie and Rayleigh. The Mie winds are measured by observing the scattering by cloud droplets and aerosols and are only available in optically thin and medium-thin clouds. The horizontal resolution of Mie profiles is 10 km. Rayleigh winds are obtained by measuring the scattering by air molecules in clear air, and have a lower horizontal resolution of 80 km.

Since Aeolus was a non-operational mission, the data need to be downloaded manually from, e.g. ESA's Earth Observation portal, https://aeolus-ds.eo.esa.int/oads/access/ (a registration is needed to download the data).

The data from Aeolus is being processed by the Aeolus DISC team, and the processing has been continously improved throughout the mission lifetime. A final version, covering the full Aeolus data set, will be released in 2028 (using baseline 18, the operational baseline at the time of the satellite's reentry was baseline 13). More details can be found here.

Harmonie changes

To use Aeolus winds, activate them in scr/include.ass by setting LIDAR_OBS to 1

export LIDAR_OBS=1             # LIDAR aeolus hlos wind
+[[  $LIDAR_OBS -eq 1  ]] && types_BASE="$types_BASE lidar"

The optimal settings to use for the observation errors of Aeolus data is still an open question. They are reported in the .bufr file which contain the L2B winds, and the limit of when to allow them can be adjusted in src/odb/pandor/module/bator_decodbufr_mod.F90

The main ones to be careful are the upper error limits. The recommended values at the time of writing are

  REAL, PARAMETER    :: error_est_threshold_Mie = 4.5  ! m/s
+  REAL, PARAMETER    :: error_est_threshold_Ray = 8.  ! m/s
+

Future updates

When the follow-on mission, Aeolus-2 (ESA's name) or EPS-Aeolus (EUMETSAT''s name) launches in 2032, these settings will probably have to be revised. The Aeolus follow-on mission will carry a revised version of the previous instrument, providing observations with higher resolution.

diff --git a/previews/PR1153/Observations/Amv/index.html b/previews/PR1153/Observations/Amv/index.html new file mode 100644 index 0000000000..8f670a6f29 --- /dev/null +++ b/previews/PR1153/Observations/Amv/index.html @@ -0,0 +1,39 @@ + +AMV · Harmonie wiki
GitHub

Atmospheric Motion Vectors (AMV)

Introduction

In this short information about the (pre-)processing, assimilation, and post-processing, as well as access to the AMV data in the Harmonie system is shown.

AMV data

AMV data is available via 1) EUMETCast, 2) the MARS archive at ECMWF (both polar and geowind) or 3) locally using NWCSAF software. Through the EUMETCast, both data are in BUFR format. An abstract from the 5th Winds Workshop on the quality control of EUMETSAT wind products (S2-3_Elliott-Parallel.pdf) provides some useful information on how AMV BUFR is encoded. We define two kinds of AMV data in the Harmonie system: Geostationary satellite based (GEOW) and polar satellite based (POLW). GEOW and POLW can be processed separately through the usual request in scr/include.ass as described below.

HARMONIE changes

scr/include.ass

In scr/include.ass should be edited to "switch on" the use of AMVs (SATOB/geowinds):

export GEOW_OBS=1               # Satob geowind / SAFNWC geowind
+export GEOW_SOURCE=ears         # mars:MARS | else: file in $OBDIR
+[[  $GEOW_OBS -eq 1  ]] && types_BASE="$types_BASE geow"
+
+export POLW_OBS=1               # Polar winds
+export POLW_SOURCE=ears         # mars:MARS | else: file in $OBDIR
+[[  $POLW_OBS -eq 1  ]] && types_BASE="$types_BASE polarw"

Important: Please note that data from MARS were not yet tested!!! Roger is happy to assist if you prefer to use this option. The Harmonie system is updated with the aim to be able to use these data in operational application.

param.cfg

The BUFR template used by your AMV data should be defined in the param.cfg file used by Bator. param.cfg files for Bator are in the const/bator_param directory. The geowind param.cfg template should be something like this:

BEGIN geowind
+A 0 4 18
+codage       1  aaaaaa
+  :          :    :
+codage       A  aaaaaa
+offset       1      24  offset for QI_3 (eumetsat & tokyo)
+offset       2      28  offset for QI_1 (NOAA)
+offset       3      14  offset for QI_2 (NOAA)
+offset       4      48  offset for QI_2 (eumetsat & tokyo)
+values       1  001007  SATELLITE IDENTIFIER
+values       2  001031  IDENTIFICATION OF ORIGINATING/GENERATING CENTRE (SEE NOTE 10)
+values       4  002221  SEGMENT SIZE AT NADIR IN X DIRECTION
+values       5  002222  SEGMENT SIZE AT NADIR IN Y DIRECTION
+values       6  004001  YEAR
+values      12  005001  LATITUDE (HIGH ACCURACY)
+values      13  006001  LONGITUDE (HIGH ACCURACY)
+values      14  002252  SATELLITE INSTRUMENT DATA USED IN PROCESSING
+values      15  002023  SATELLITE DERIVED WIND COMPUTATION METHOD
+values      16  007004  PRESSURE
+values      17  011001  WIND DIRECTION
+values      18  011002  WIND SPEED
+values      21  012193  COLDEST CLUSTER TEMPERATURE
+values      22  002231  HEIGHT ASSIGNMENT METHOD
+values      23  002232  TRACER CORRELATION METHOD
+values      24  008012  LAND/SEA QUALIFIER
+values      25  007024  SATELLITE ZENITH ANGLE
+values     211  033007  % CONFIDENCE
+END geowind

Please be reminded that the processing of data from MARS was not yet tested. From 43h2.1, we have the all necessary content of the param file for processing of both GEOW and POLW in const/bator_param/param_bator.cfg.geow.${GEOW_SOURCE/POLW_SOURCE}

BATOR namelist

Depending on the satellite and channel you may have to add entries to the NADIRS namelist in the Bator script like the following:

TS_GEOWIND(isatid)%T_SELECT%LCANAL(ichanal)=.TRUE.,
  • Satellite identifiers are available here: [https://confluence.ecmwf.int/wiki/display/ECC/WMO%3D27+code-flag+table]
  • Bator defaults for MSG AMV data are set in src/odb/pandor/module/bator_init_mod.F90

Source code

The reading of BUFR AMVs is taken care of by src/odb/pandor/module/bator_decodbufr_mod.F90. This subroutine reads the following parameters defined in the param.cfg file:

NameDescription
Date and timederived from the tconfig(004001) - assumes month, day, hour and minute are in consecutive entries in the values array
Locationlatitude and longitude are read from tconfig(005001) and tconfig(006001)
Satellitethe satellite identifier is read from tconfig(001007)
Origin. centerthe originating center (of the AMV) is read from tconfig(001031)
Compu. methodthe wind computation method (type of channel + cloudy/clear if WV) is read from tconfig(002023)
Derivation methodthe height assignment method is read from tconfig(002163) and the tracking method from tconfig (002164)
Channel frequencythe centre frequency of the satellite channel is read from tconfig(002153)
Height (pressure)the height of the AMV observation is read from tconfig(007004)
Windthe wind speed and direction are read from tconfig(011002) and tconfig(011001)
Temperaturethe coldest cluster temperature is read from tconfig(012071)
FG QIThe QI (including FG consistency) for MSG AMVs is read from the first location where descriptor 033007 appears
noFG-QIThe FG-independent QI for MSG AMVs is read from the first location where 033007 appears + offset(1)=24
Sat zenith anglethe satellite zenith angle is read from tconfig(007024)
Land/sea/coasta land/sea/coast qualifier is read from tconfig(008012)

The geowind routine was adapted to handle MSG AMVs from MARS and its module /src/odb/pandor/module/bator_decodbufr_mod.F90 uploaded to the trunk (Mar 2017) .

Blacklist

The selection/blacklist of AMVs according to channel, underlying sea/land, QI, etc. is done in src/blacklist/mf_blacklist.b, section - SATOB CONSTANT DATA SELECTION -.

diff --git a/previews/PR1153/Observations/Ascat/index.html b/previews/PR1153/Observations/Ascat/index.html new file mode 100644 index 0000000000..7d4c678765 --- /dev/null +++ b/previews/PR1153/Observations/Ascat/index.html @@ -0,0 +1,6 @@ + +AScat · Harmonie wiki
GitHub
diff --git a/previews/PR1153/Observations/Atovs/index.html b/previews/PR1153/Observations/Atovs/index.html new file mode 100644 index 0000000000..2c4f73015f --- /dev/null +++ b/previews/PR1153/Observations/Atovs/index.html @@ -0,0 +1,258 @@ + +ATOVS · Harmonie wiki
GitHub

ATOVS radiances (pre-) processing

Introduction

The IFS/ARPEGE/AROME data assimilation code uses level 1-c radiances. ATOVS radiances are available through local HRPT (High Rate Picture Transmission) antenna and the EUMETSAT EARS (European Advanced Retransmission Service) EUMETCast broadcasting system. Data received through local antenna need to be pre-processed with the ATOVS and AVHRR Pre-processing Package (AAPP). Radiances are also available trough the GTS, but with longer timelines.

This short description explains how to prepare ATOVS radiances for (operational) data assimilation. Like all radiances, ATOVS data bias is corrected using Variational technique. VarBC coefficients should be updated for each limited area model. The variational bias correction is activated through namelist switches (see below).

ATOVS radiances

scr/include.ass

src/include.ass should be edited to "switch on" the use of AMSUA (AMSU-A), AMSUB (AMSU-B/MHS):

export AMSUA_OBS=1             # AMSU-A
+export AMSUB_OBS=1             # AMSU-B, MHS
+export ATOVS_SOURCE=mars       # local: EUMETCast;
+                               # mars: data from MARS
+                               # hirlam: hirlam radiance template

The default handling of ATOVS (AMSU-A and AMSU-B/MHS) is so that we store/load them in separate ODB bases. The definition of the bases in Harmonie is done in scr/include.ass.

Loading the ATOVS radiances

Data extracted from MARS

  • Data extracted from MARS (the default setting in the Harmonie) is loaded the following way:
  • After extraction, all observations, including the radiances, are shuffled per observation type;
  • In Bator ATOVS data are loaded from the oulan working directory the following way:
        # AMSU-A observations
+      elif [ "$base" = amsua] ; then
+        # AMSU-A
+        if [ "$AMSUA_OBS" -eq 1]; then
+          echo "amsua    BUFR     amsua            ${YMD} ${HH}">>refdata
+          ln -sf "$WRK"/oulan/amsua ./BUFR.amsua
+          cp "${HM_LIB}"/nam/param_bator.cfg.amsua."${ATOVS_SOURCE}" ./param.cfg
+        fi
+      elif [ "$base" = amsub] ; then
+        # AMSU-B
+        if [ "$AMSUB_OBS" -eq 1]; then
+          echo "amsub    BUFR     amsub            ${YMD} ${HH}">>refdata
+          ln -sf "$WRK"/oulan/amsub ./BUFR.amsub
+          cp "${HM_LIB}"/nam/param_bator.cfg.amsub."${ATOVS_SOURCE}" ./param.cfg
+        fi

Locally received data

  • Locally received (usually through the EARS system) data are loaded the from a source or the "observations" directory. Note, it is recommanded to have both AMSU-B and MHS data in one file. Otherwise, it's recommanded to create a single file with them. One can use the command "cat" to do this.
  • The example below shows a case when AMSU-B and MHS are stored in different BUFR files:
           # AMSU-A observations
+    elif [ "$base" = amsua] ; then
+      # AMSU-A
+      if [ "$AMSUA_OBS" -eq 1]; then
+        echo "amsua    BUFR     amsua            ${YMD} ${HH}">>refdata
+        #ln -sf "$WRK"/oulan/amsua ./BUFR.amsua
+        ln -sf /scratch/ms/no/sbt/hm_home/RR_CONV/observations/amsua${YMD}${HH} ./BUFR.amsua
+        cp "${HM_LIB}"/nam/param_bator.cfg.amsua."${ATOVS_SOURCE}" ./param.cfg
+      fi
+    elif [ "$base" = amsub] ; then
+      # AMSU-B
+      if [ "$AMSUB_OBS" -eq 1]; then
+        cat /scratch/ms/no/sbt/hm_home/RR_CONV/observations/amsub${YMD}${HH}  /scratch/ms/no/sbt/hm_home/RR_CONV/observations/mhs${YMD}${HH} > "$WRK"/oulan/amsub
+        echo "amsub    BUFR     amsub            ${YMD} ${HH}">>refdata
+        ln -sf "$WRK"/oulan/amsub ./BUFR.amsub
+        cp "${HM_LIB}"/nam/param_bator.cfg.amsub."${ATOVS_SOURCE}" ./param.cfg
+      fi

param.cfg

The BUFR template used by ATOVS (AMSU-A, AMSU-B/MHS) data should be defined in the param_bator.cfg.${atovs}.${ATOVS_SOURCE} file used by Bator. Where $atovs (amsua or amsua) and ATOVS_SOURCE as defined above according to the source of the data source. param.cfg files for Bator are in the nam namelist directory. The ATOVS param.cfg template should be something like this: For locally processed AMSU-A:

BEGIN amsua
+1 1 0 14
+codage     1  310009
+control    1      15  nb de canaux
+values     6  001034  Originating sub-centre
+values     7  001007  Satellite identifier
+values    11  005041  Scan line number
+values    12  005043  Field of view number
+values    22  005001  Latitude
+values    23  006001  Longitude
+values    16  004001  Year
+values    25  007024  Satellite zenith angle
+values    24  007001  Height of station
+values    26  005021  Bearing or azimuth
+values    27  007025  Solar zenith angle
+values    28  005022  Solar azimuth
+values    43  012063  Brightness Temperature
+values    38  002150  Tovs Channel number
+END amsua

For AMSU-A from MARS:

BEGIN amsua
+1 1 0 14
+codage     1  310008
+control    1      15  nb de canaux
+values     6  001034  Originating sub-centre
+values     7  001007  Satellite identifier
+values    11  005041  Scan line number
+values    12  005043  Field of view number
+values    22  005001  Latitude
+values    23  006001  Longitude
+values    16  004001  Year
+values    25  007024  Satellite zenith angle
+values    24  007001  Height of station
+values    26  005021  Bearing or azimuth
+values    27  007025  Solar zenith angle
+values    28  005022  Solar azimuth
+values    43  012063  Brightness Temperature
+values    38  002150  Tovs Channel number
+END amsua

For locally processed AMSU-B:

BEGIN amsub
+1 1 0 15
+codage     1  310010
+control    1       5  nb de canaux
+values     6  001034  Originating sub-centre
+values     7  001007  Satellite identifier
+values    11  005041  Scan line number
+values    12  005043  Field of view number
+values    22  005001  Latitude
+values    23  006001  Longitude
+values    16  004001  Year
+values     8  002048  Satellite sensor type
+values    24  007001  Height of station
+values    25  007024  Satellite zenith angle
+values    26  005021  Bearing or azimuth
+values    27  007025  Solar zenith angle
+values    28  005022  Solar azimuth
+values    38  002150  Tovs Channel number
+values    43  012063  Brightness Temperature
+END amsub

For AMSU-B from MARS:

BEGIN amsub
+1 1 0 15
+codage     1  310008
+control    1       5  nb de canaux
+values     6  001034  Originating sub-centre
+values     7  001007  Satellite identifier
+values    11  005041  Scan line number
+values    12  005043  Field of view number
+values    22  005001  Latitude
+values    23  006001  Longitude
+values    16  004001  Year
+values     8  002048  Satellite sensor type
+values    24  007001  Height of station
+values    25  007024  Satellite zenith angle
+values    26  005021  Bearing or azimuth
+values    27  007025  Solar zenith angle
+values    28  005022  Solar azimuth
+values    38  002150  Tovs Channel number
+values    43  012063  Brightness Temperature
+END amsub

BATOR namelist and data extraction

Depending on the satellite and channel you may have to add entries to the NADIRS namelist in the Bator script like the following:

 &NADIRS
+   LMFBUFR=.FALSE.,
+   TS_AMSUA(206)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(206)%t_select%TabFov(:) = -1,
+   TS_AMSUA(206)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(207)%t_select%TabFov(:) =  -1,
+   TS_AMSUA(207)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(207)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(209)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(209)%t_select%TabFov(:) = -1,
+   TS_AMSUA(209)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(223)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(223)%t_select%TabFov(:) = -1,
+   TS_AMSUA(223)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(4)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(4)%t_select%TabFov(:) = -1,
+   TS_AMSUA(4)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(3)%t_select%ChannelsList(:) = -1,
+   TS_AMSUA(3)%t_select%TabFov(:) = -1,
+   TS_AMSUA(3)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUA(3)%t_select%SclJump = 0,
+   TS_AMSUA(784)%t_select%TabFov(:) = -1,
+   TS_AMSUA(784)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(206)%t_select%TabFov(:) = -1,
+   TS_AMSUB(206)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(206)%t_select%SclJump = 0,
+   TS_AMSUB(206)%t_satsens%ModSensor = -1,
+   TS_AMSUB(207)%t_select%TabFov(:) = -1,
+   TS_AMSUB(207)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(207)%t_select%SclJump = 0,
+   TS_AMSUB(207)%t_select%ChannelsList(:) = -1,
+   TS_AMSUB(208)%t_select%TabFov(:) = -1,
+   TS_AMSUB(208)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(208)%t_select%SclJump = 0,
+   TS_AMSUB(208)%t_select%ChannelsList(:) = -1,
+   TS_AMSUB(209)%t_select%TabFov(:) = -1,
+   TS_AMSUB(209)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(209)%t_select%SclJump = 0,
+   TS_AMSUB(209)%t_satsens%ModSensor = 4,
+   TS_AMSUB(209)%t_select%ChannelsList(:) = -1,
+   TS_AMSUB(4)%t_select%TabFov(:) = -1,
+   TS_AMSUB(4)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(4)%t_select%SclJump = 0,
+   TS_AMSUB(4)%t_select%ChannelsList(:) = -1,
+   TS_AMSUB(3)%t_select%TabFov(:) = -1,
+   TS_AMSUB(3)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(3)%t_select%SclJump = 0,
+   TS_AMSUB(3)%t_satsens%ModSensor = 15,
+   TS_AMSUB(223)%t_select%TabFov(:) = -1,
+   TS_AMSUB(223)%t_select%TabFovInterlace(:) = -1,
+   TS_AMSUB(223)%t_select%SclJump = 0,
+   TS_AMSUB(223)%t_select%ChannelsList(:) = -1,

All the "-1" mean that we extract all available data we found. No restriction on the channels nor fields of view (FOV), nor on scanning lines (through TS_AMSUB(???)%t_select%SclJump = 0,). The default choices are defined in the routine called src/odb/pandor/module/bator_init_mod.F90. Note that although the NOAA-18 was embarked with MHS instrument, somehow our system treat the NOAA-18 MHS as AMSU-B (implementation decision) TS_AMSUB(209)%t_satsens%ModSensor = 4, is changing the instrument characteristics in our system, while for Metop-A MHS is defined through TS_AMSUB(3)%t_satsens%ModSensor = 15,.

Variational bias correction and screening

The variational technique is used to correct the bias for radiance data in Harmonie. Default choice of predictors used to correct bias for different channels of different instruments is defined in src/arpifs/module/varbc_rad.F90 as the example taken for AMSU-B below:

DO ic = 2, 5
+  SELECT case (ic)
+  case (2)
+    yconfig(msensor_AMSUB, ic)%nparam = 4
+    yconfig(msensor_AMSUB, ic)%npredcs(1:4) = (/0,8,9,10/)
+  case (3:5)
+    yconfig(msensor_AMSUB, ic)%nparam = 8
+    yconfig(msensor_AMSUB, ic)%npredcs(1:8) = (/0,1,2,5,6,8,9,10/)
+  END SELECT
+ENDDO

The choice for predictors for VarBC in Harmonie is given through namelist of the screening and minimisation in nam/harmonie_namelist.pm as follows. The update concerns the choice of predictors for each channel of the used instruments and also the nbg (nbg_AMSUA, nbg_AMSUB, nbg_MHS, ...) definition for each instruments. Note that the NBG defines the "speed of the adaptivity" of the varBC. High value have slowing, while low value have speeding effect:

 NAMVARBC=>{
+ },
+ NAMVARBC_RAD=>{
+ 'LBC_RAD' => '.TRUE.,',
+ 'yconfig(3,5)%nparam' => '10',
+ 'yconfig(3,5)%npredcs(1:10)' => '0,1,2,8,9,10,15,16,17,18',
+ 'yconfig(3,6)%nparam' => '5',
+ 'yconfig(3,6)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(3,7)%nparam' => '5',
+ 'yconfig(3,7)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(3,8)%nparam' => '5',
+ 'yconfig(3,8)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(3,9)%nparam' => '5',
+ 'yconfig(3,9)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(3,10)%nparam' => '5',
+ 'yconfig(3,10)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(4,2)%nparam' => '4',
+ 'yconfig(4,2)%npredcs(1:4)' => '0,8,9,10',
+ 'yconfig(4,3)%nparam' => '5',
+ 'yconfig(4,3)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(4,4)%nparam' => '5',
+ 'yconfig(4,4)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(4,5)%nparam' => '5',
+ 'yconfig(4,5)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(15,2)%nparam' => '4',
+ 'yconfig(15,2)%npredcs(1:4)' => '0,8,9,10',
+ 'yconfig(15,3)%nparam' => '5',
+ 'yconfig(15,3)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(15,4)%nparam' => '5',
+ 'yconfig(15,4)%npredcs(1:5)' => '0,1,8,9,10',
+ 'yconfig(15,5)%nparam' => '5',
+ 'yconfig(15,5)%npredcs(1:5)' => '0,1,8,9,10',
+ 'nbg_AMSUA' => '2000',
+ 'nbg_AMSUB' => '2000',
+ 'nbg_MHS' => '2000'
  • Satellite identifiers are available here: [https://confluence.ecmwf.int/wiki/display/ECC/WMO%3D27+code-flag+table]

Source code

The reading of BUFR ATOVS (AMSU-A and AMSU-B/MHS) is taken care of by the subroutines in src/odb/pandor/module/bator_decodbufr_mod.F90. These subroutines read the above parameters defined in the param.cfg file (see above):

Default values for VarBC are defined in src/arpifs/module/varbc_rad.F90.

The defined varBC predictors are computed in src/arpifs/module/varbc_pred.F90.

Blacklisting

Preparation for radiance monitoring

Radiances sensed by polar orbiting satellites like NOAA and Meteop series are accessible differently at different assimilation time for different LAM model. This means that we use these data differently in different Harmonie LAM models. To make the assimilation optimal for our domain, we need to monitor the accessibility of data from different instruments inside our model domain. There are two ways of monitoring the radiance data assimilation:

  1. we do passive assimilation of the radiances using the assimilation and forecast systems;
  2. when having forecasts with the system, which we would like to use when assimilating the radiance data, then we can do independent assimilations of radiances with the first guess from the existing mentioned results.

Monitoring with passive data assimilation

There two ways of monitoring the availability and assimilation of polar orbiting-based radiances. In any case we assimilate the radiances in passive way by changing some settings in the src/blacklist/mf_blacklist.b as follows at the end of blacklisting procedure for each instrument. Please read carefully this paragraph until the end before starting your passive experiment. Below is the example for AMSU-A radiances:


+ ...
+! begin passive
+        fail(EXPERIMENTAL);
+! end passive
+
+    endif;   ! SENSOR = AMSUA

This way we guarantee that the blacklisting rules for active radiances are applied, which is very important when we change to active assimilation.

Monitoring using the Obsmon tool

To have the all statistics we need when using the Obsmon tool, in ecf/config_exp.h set the following:

# *** Observation monitoring ***
+OBSMONITOR=obstat               # Create Observation statistics plots

Note that running the Harmonie system with this option may slow down you monitoring process. Instead, you can run the Obmon separately. More about the Obsmon monitoring tool can be found here.

Cold start

This way of monitoring is defined the following way in Harmonie through the scr/include.ass:

# Start with empty VARBC coefficients
+export VARBC_COLD_START=yes # yes|no

In this way the estimation starts with zero coefficients and we need minimum 20 days to have the bias for different channels well converging to their nominal values. This is the common practice in Hirlam community, but some studies in LACE showed that warmstart can be advantageous.

Warm start

This way we start with precomputed varBC coefficients from other LAM or from a global model. See the section on "activating existing varBC coefficients" below. We set our choice in scr/include.ass the following way:

# Start with empty VARBC coefficients
+export VARBC_COLD_START=no # yes|no

Monitoring with independent analyses and without Obsmon

This solution needs additional playfile, which is not yet implemented in the Harmonie system. The playfile avoid the extraction of the LBCs, execution of the forecast and the post-processing parts of the Harmonie system. On top of the screening and minimization, it takes into account of the archiving part of the odb data.

Once you have the ODB database after a month of experiment with analyses only, you can extract the the first-gess departures (fg_depar) and the analysis increments (an_depar) using the scripts in this tarball. When the extraction is finished, you can compute the statistics using the this tool. Use the script called ExtractOdb_?? to extract the departure information. To compute the statistics, use the script called checkbias_??. To plot the final results you can use the R-based scripts in this tarbal file.

Analysing the results

  • **Using obsmon **

To check the efficiency of the assimilation of each channel extracted by Bator use the obcmon abd make your choice similar to the example below. Make sure that you have chosen your experiment and set up the period for the whole period of your monitoring.

Note

missing image Obsmon_departures_check.png

Then plotting the results, you should have something similar to the example below:

Note

missing image Obsmon_departues_check2.png

Take note about the channels that behave badly (having large bias an_depar over Land or Sea) at different assimilation time. Note that for AMSU-B and MHS, the observation error is relatively larger than that of the AMSU-A. So, you can allow larger bias than for AMSU-A. See the examples bellow.

  • **Not using obsmon **

The good point of choosing this tool is that the results are more compacted in only few eps-formatted files, which makes the analysis easier than with Obsmon. The analysis procedure is the same.

When the assimilation of the ATOVS radiances at all assimilation times was checked, then use the blacklisting rules described below to make your final choice for your LAM model with ATOVS.

Blacklisting rules

Once we have the list of the bad channels for each of the assimilation time you'd like to apply your ATOVS assimilation, the follow the rules described below. Let take the following decision for example. We need to blacklist the channels 5,6,7, 8 from NOAA-18 AMSU-A 12 UTC. How to register the bad channels in the file called LISTE_LOC_${HH} is described in this presentation.

According to our example, we create the file called LISTE_LOC_12 with the following content:

N  7 210      209       3 TOVS4       5       6       7       8
+N  7 210      209       3 TOVS5      11      12      13      14      15

The first line means: N - blacklist 7 - satem observation 210 - level 1c 209 - NOAA-18 3 - AMSU-A TOVS4 - blacklist 4 channels, which are 5, 6,7 and 8

Put the LISTE_LOC_$HH files under the nam directory.

Set up the VarBC coefficients for your experiment or operational data assimilation

For experiments

Here we have already the VarBC coefficients, so we do warm start (see setup above). her is the procedure:

  • Fetch the VARBC.cycle files from the latest odb_stuff.tar for each assimilation time. In case of 3h cycling, we fetch the VARBC.cycle from the latest 8 cycles. Rename them the following way: VARBC.cycle.$DOMAIN.$EMONTH.$HH, where EMONTH can be SUMMER or WINTER. Like for example: VARBC.cycle.AROME_Arctic.SUMMER.12.
  • Put these files under const/bias_corr/

These files are arranged this Fetchassimdata the following way: For all Hamonie cycles up to 40:

     # Fetch data
+       if [ ! -s ${DLOCVARBC}/VARBC.cycle] ; then
+
+         echo "Fetch the data from $HM_LIB/const/bias_corr"
+         # Set the proper VARBC period for coefficients
+         case $MM in
+           10|11|12|01|02|03)
+             EMONTH=WINTER
+           ;;
+           04|05|06|07|08|09)
+             EMONTH=SUMMER
+           ;;
+           *)
+             echo "This should never happen. MM is $MM"
+             exit 1
+         esac
+
+         cp $HM_LIB/const/bias_corr/VARBC.cycle.$DOMAIN.$EMONTH.$HH ${DLOCVARBC}/VARBC.cycle || \
+         { echo "Could not find cold start VARBC data VARBC.cycle.$EMONTH.$HH" ; exit 1 ; }
+              ls -lrt ${DLOCVARBC}
+       fi

From cycle 43:

     # Fetch data
+       if [ ! -s ${DLOCVARBC}/VARBC.cycle] ; then
+
+         echo "Fetch the data from $HM_LIB/const/bias_corr"
+         # Set the proper VARBC period for coefficients
+         case $MM in
+           10|11|12|01|02|03)
+             EMONTH=WINTER
+           ;;
+           04|05|06|07|08|09)
+             EMONTH=SUMMER
+           ;;
+           *)
+             echo "This should never happen. MM is $MM"
+             exit 1
+         esac
+
+         cp $HM_LIB/const/bias_corr/${DOMAIN}/VARBC.cycle.$HH ${DLOCVARBC}/VARBC.cycle || \
+         { echo "Could not find cold start VARBC data VARBC.cycle.$EMONTH.$HH" ; exit 1 ; }
+              ls -lrt ${DLOCVARBC}
+       fi

With a tiny difference that all the VarBC files are now stored under a ${DOMAIN} directory. This allows our system to be up-to-date and ready for all known model domains. Please send your VarBC files to the system administrators.

For operational implementation

The setup is much easier. Name the VARBC.cycle files the following way VARBC.cycle.${HH} and put them in $ARCHIVE_ROOT/VARBC_latest, which you need to create.

To check that you have done things right:

  • Doing experiment: Check that you have all LISTE_LOC_$HH files under the nam directory, and the VARBC.cycle.$DOMAIN.$EMONTH.$HH files under const/bias_corr directory.

  • Operational implementation: Check that you have all LISTE_LOC_$HH files under the nam directory, and the VARBC.cycle.$HH under the $ARCHIVE_ROOT/VARBC_latest directory.

If you passed the test, then you are ready with ATOVS implementation. Congratulation!

diff --git a/previews/PR1153/Observations/Bator/index.html b/previews/PR1153/Observations/Bator/index.html new file mode 100644 index 0000000000..f2a414350a --- /dev/null +++ b/previews/PR1153/Observations/Bator/index.html @@ -0,0 +1,91 @@ + +Bator · Harmonie wiki
GitHub

ODB creation: Bator

General Description

The pre-processing step creates ODB (Observational Data Base) from various observation data files possibly in different formats.

  • Software: The programs used for pre-processing (ShuffleBufr, oulan and BATOR) are not part of the IFS code. oulan is software developed at Météo France to extract (conventional) observations from their local database (BDM). The ASCII output from oulan, the OBSOUL file, is one of the inputs of BATOR. By default, oulan is no longer part of the observation processing chain. BATOR is also developed at Météo France to generate the ODB (Observational !DataBase) database for the ARPEGE/ALADIN/HARMONIE analysis system. ODB is a tailor made database software developed at ECMWF to manage very large observational data volumes assimilated in the IFS 4DVAR system, and to enable flexible post-processing of this data. HARMONIE's BATOR originates from the MF export-pack. The figure below describes the mechanism of the observation pre-processing in HARMONIE DA. To sum it up, !ShuffleBufr splits different observations into BUFR files and BATOR creates the ODB file using from BUFR/HDF5/NetCDF input files.
  • Compilation: BATOR is compiled using gmakpack or makeup.
  • Scripts: scr/Bator.
  • Input: BUFR/HDF5/NetCDF
  • Output: ODB databases for surface and upper-air data assimilation

BATOR

BATOR creates the ODB files from observational data in BUFR/HDF5/NetCDF format. BATOR also includes filtering (blacklisting) of parameters from stations of different observation types. To run the BATOR program one needs files containing blacklist rules/information, namelist(s), file containing information about observations and their format – refdata -, and some setting for the ODB environment. Documentation provided by Météo France is available at http://www.umr-cnrm.fr/gmapdoc/spip.php?article229. In particular: BATOR namelists, the param_bator.cfg file and the batormap files.

observation window and timeslots

The timeslots characteristics are provided by BATOR using the following environment variables. These are defined in scr/Bator based on settings provided in scr/include.ass and ecf/config_exp.h.

Environment variableDescription
ODB_ANALYSIS_DATEanalysis date (YYYYMMDD)
ODB_ANALYSIS_TIMEanalysis time (hhmmss)
BATOR_NBSLOTnumber of timeslots needed [1, 9999]
BATOR_WINDOW_LENwidth of the temporal assimilation window (in minutes) [1, 9999]
BATOR_WINDOW_SHIFTshift of the temporal assimilation window relative to the analysis time (in minutes). Must be negative.
BATOR_SLOT_LENwidth of a standard timeslot (in minutes) [1, 9999]
BATOR_CENTER_LENwidth of the centred timeslot (in minutes) [1, 9999]

batormap

The batormap file lists all the input data files (BUFR,NETCDF,HDF5,OBSOUL) to translate and put in a particular ODB database. Several records can be stored in this file, each one composed by the following 4 fields (blank spaces are used as separator). The batormap file is created by scr/Bator based on settings provided in scr/include.ass and task arguments.

  • The ECMA database extension in which data will be stored, up to 8 characters.
  • The data filename extension, up to 8 characters.
  • Data filename format, up to 8 characters.
  • Kind of data or instrument, up to 16 characters. Must match a kind of data in the subroutine bator_initlong (src/odb/pandormodule/bator_init_mod.F90)

For example:

conv     conv     OBSOUL   conv
+conv     synop    BUFR     synop

param.cfg

BATOR reads BUFR data according to definitions describing BUFR templates in the param.cfg file. The general layout of definitions in the param.cfg file is as follows:

BUFR label
+a b c d
+codage  a1  desc_a1
+...
+codage  an   desc_an
+control b1   val1
+...
+control bn   valn
+offset  c1   inc1
+...
+offset  cn   incn
+values  pos_d1 desc_d1
+...
+values  pos_dn desc_dn
+/BUFR label

where:

  • a: number of unexpanded descriptors (NTDLEN if you are familiar with bufrdc software).
  • b: number of "control" entries - "control" values used by src/odb/pandor/module/bator_decodbufr_mod.F90
  • c: number of "offset" entries - "jump" values used by src/odb/pandor/module/bator_decodbufr_mod.F90
  • d: number of "values" entries - bufrdc VALUES array indices of parameters
  • codage desc: FXY's of NTDLST array values
  • values desc: FXY's of NTDEXP array values

param.cfg files are stored in const/bator_param and linked for use by BATOR in scr/Bator

Namelists

  • Namelists are needed for BATOR to deal with observations having format structure different than that of MF. For example to read local Seviri data in grib format, one should set some parameters (NLON_GRIB and NLAT_GRIB) in the NADIRS group. Note: If my last modifications will be accepted, we will need to set parameters in the mentioned group, so the use of this namelist become obligatory for “local” (outside MF) HARMONIE system. The namelist looks like this:
 &NADIRS
+   LMFBUFR=.FALSE.,                                         # we are not using Météo France BUFR
+   ASCAT_XYGRID=12500.,                                     # ASCAT XYGRID RESOLUTION /LR=25000m/HR=12500m/
+   GPSSOLMETHOD="CENT",                                     # Selection method for GNSS data "CENT"/"MEAN"
+   NbTempMaxLevels=6000,                                    # Maximum number of radiosonde levels read
+   TempSondOrTraj=.FALSE.,                                  # .TRUE. = sondage vertical, .FALSE. = trajectoire
+   TempSondSplit=.FALSE.,                                   # .TRUE. = on coupe le radiosondage/timeslot, .FALSE. = profil simple
+   ElimTemp0=.FALSE.,                                       # suppression des TEMP sans delta lat/lon/time si .TRUE.
+   ElimPilot0=.FALSE.,                                      # suppression des PILOT sans delta lat/lon/time si .TRUE.
+   NFREQVERT_TPHR=100,                                      # thinning factor for radiosonde data
+   NbMinLevelHr=300,                                        # level threshold for high-resolution treatement of sonde data
+   TS_AMSUA(206)%t_select%ChannelsList(:) = -1,             # ...
+   TS_AMSUA(206)%t_select%TabFov(:) = -1,                   # ...
+   TS_AMSUA(206)%t_select%TabFovInterlace(:) = -1,          # ...
+   :                                                        # :
+   :                                                        # :
+   :                                                        # :
+   SIGMAO_COEF(1:18)=18*1.0,                                # Scaling of sigmo-o coefficients
+ /
+ &NAMSCEN
+ /
+ &NAMDYNCORE
+ /
+ &NAMSATFREQ
+ /
+

  • Namelist to activate (bator) LAMFLAG (needed to extract the observations for the model + extension zone domain): one needs to fetch the bator_lamflag namelist using the following command

    lamflag_namelist VAR
     &NAMFCNT
+   LOBSONLY=.FALSE.,
+ /
+ &NAMFGEOM
+   EFLAT0=$LAT0,
+   EFLON0=$LON0,
+   EFLATC=$LATC,
+   EFLONC=$LONC,
+   EFLAT1=$LAT1,
+   EFLON1=$LON1,
+   EFDELX=$GSIZE,
+   EFDELY=$GSIZE,
+   NFDLUN=1,
+   NFDGUN=1,
+   NFDLUX=$NDLUXG,
+   NFDGUX=$NDGUXG,
+   Z_CANZONE=1500.,
+   REDZONE=$REDZONE_BATOR,
+   LVAR=$LVAR,
+   LNEWGEOM=.TRUE.,
+ /
+ &NAMFOBS
+   LSYNOP=$LSYNOP,
+   LAIREP=$LAIREP,
+   LDRIBU=$LDRIBU,
+   LTEMP=$LTEMP,
+   LPILOT=$LPILOT,
+   LPAOB=$LPAOB,
+   LSCATT=$LSCATT,
+   LSATEM=$LSATEM,
+   LSATOB=$LSATOB,
+   LSLIMB=$LSLIMB,
+   LRADAR=$LRADAR,

Environment variables

  • ODB settings for BATOR:
    		export ODB_CMA=ECMA
+		export ODB_SRCPATH_ECMA=${d_DB}/ECMA.${base}
+		export ODB_DATAPATH_ECMA=${d_DB}/ECMA.${base} 
+		export ODB_ANALYSIS_DATE=${YMD}
+		export ODB_ANALYSIS_TIME=${HH}0000
+		export IOASSIGN=${d_DB}/ECMA.${base}/IOASSIGN
+		export BATOR_NBPOOL=${NPOOLS}
+
+		#--- prepare db dir
+		RecreateDir ${d_DB}/ECMA.${base}	   
+		#-- create IOASSIGN file for the given sub-base
+		cd ${d_DB}/ECMA.${base}	
+		export ODB_IOASSIGN_MAXPROC=${NPOOLS}
+		$HM_LIB/scr/create_ioassign -l "ECMA" -n ${BATOR_NBPOOL}

where $base is the ODB base ($base can be conv (for conventional data), amsu (ATOVS/AMSU-A,AMSU-B/MHS), sev (for Sevir), iasi, radarv (radar) for example). Important: If you would like to have more bases, do not forget to take that into consideration when generating the "batormap" file for BATOR to define which observations you would like to have in each base.

Blacklisting

To avoid model forecast degradation, two files can be used to blacklist or exclude data from the analysis. They are also used to blacklist observations that the model cannot deal with because they are not representative (orography, breeze effects...). The reason for the existence of this method of 'blacklisting', built-in Bator, alongside with hirlam_blacklist.b (built-in Screening) is to allow simple and quick changes (and especially without changing binary) in the operational suite.

The selection of an observation to be 'blacklisted' can be done using multi-criteria (SID/STATID, obstype, codetype, varno, channel/level, production center, sub-center producer, network (s) concerned (s), cycle (prod / assim), ..).

LISTE_LOC

The LISTE_LOC file can be used to blacklist satellite data and also for other data by type and / or subtype for a given parameter (described by varno or not). The contents of the LISTE_LOC are as follows:

ColumnDescriptionFormat
1Type of action: N: blacklisted, E: excludea1
2The observation type (obsytpe@hdr)i3
3The observation code-type (codetype@hdr)i4
4The satellite ID with leading zeros (satid@sat)a9
5The centre that produced the satellite datai4
6The parameter ID (varno@body) or the satellite sensor ID (sensor@hdr)i4
7Optional keywords of ZONx4, TOVSn, PPPPn, PROFn

TOVSn C1 C2 ... Cn

  • can be aplied to ATOVS radiances
  • n can be at most 9 indicating the involved channels
  • the Ci values specify the channels to be blacklisted

PPPPn P1 P2 ... Pn

  • can be aplied to blacklist different pressure levels
  • n can be at most 9 indicating the involved levels
  • the Pi values specify the pressure levels (in hPa) to be blacklisted

PROFn P1a P2 ... Pn-1 I1 I2 ... In-1

  • n can be at most 9 indicating the involved layers
  • the Pi values specify the bottom and top levels of pressure layers (in hPa).
  • The first layer is always [1000,P1]
  • the Ii values indicate if blacklisting should be applied (=1) or not (=0) to the given layer.

ZONx4 latmin latmax lonmin lonmax

  • can be applied to SATOB/GEOWIND data
  • if x=B then the pixels with lat < latmin or lat > latmax or lon < lonmin or lon > lonmax will be blacklisted
  • if x=C then the pixels with lat < latmin or lat > latmax or (lon > lonmin and lon < lonmax) will be blacklisted.

LISTE_NOIRE_DIAP

The LISTE_NOIRE_DIAP (const/bator_liste) can be used to blacklist conventional observations by station identifier. The contents of the LISTE_NOIRE_DIAP are as follows:

ColumnDescriptionFormat
1Observation type (obstype@hdr)i2
2Observation namea10
3Observation codetype (codetype@hdr)i3
4Parameter ID (varno@body)i3
5Station ID (statid@hdr)a8
6Start date of blacklisting yyyymmdda8
7Optional layer blacklisting (PROFn)a180

PROFn P1a P2 ... Pn-1 I1 I2 ... In

  • n can be at most 9 indicating the involved layers
  • the Pi values specify the bottom and top levels of pressure layers (in hPa).The first layer is always [1000,P1]
  • the Ii values indicate if blacklisting should be applied (=1) or not (=0) to the given layer.
  • The Hxx keyword specifies the analysis hour that should be blacklisted e.g. H00 or H06 etc

Particularities - the blacklisting of certain parameters involves the automatic blacklisting of other parameter summarized in the table below:

obstypespecified parameterblacklisted parameters
SYNOP39 (t2)39 (t2), 58 (rh2), 7 (q)
SYNOP58 (rh2)58 (rh2), 7 (q)
TEMP1 (z)1 (z), 29 (rh), 2 (t), 59 (td), 7 (q)
TEMP2 (t)2 (t), 29 (rh), 7 (q)
TEMP29 (rh)29 (rh), 7 (q)
diff --git a/previews/PR1153/Observations/Cope/index.html b/previews/PR1153/Observations/Cope/index.html new file mode 100644 index 0000000000..2c3896dba4 --- /dev/null +++ b/previews/PR1153/Observations/Cope/index.html @@ -0,0 +1,89 @@ + +Cope · Harmonie wiki
GitHub

ODB creation (COPE)

General Description

HIRLAM, ALADIN and Météo France are working together with ECMWF to develop COPE, Continuous Observation Pre-processing Environment, to replace Oulan/Bator (and BUFR2ODB at ECMWF), to improve the pre-processing of observations for use in NWP. COPE developments are made in ECMWF's git repository.

Here are some links that may be of interest:

"Support" software packages

This section provides a step-by-step set of instruction on how to compile COPE and COPE related software.

Preparation

These instructions rely on the ODB API source code bundle odbapibundle-0.18.1-Source.tar.gz and emoslib libemos-4.4.2-Source.tar.gz. The default install location for software packages is in $HOME/metapp/.

mkdir -p $HOME/test_ecmwf_releases
+mkdir -p $HOME/test_ecSource
+cp odb_api_bundle-0.15.2-Source.tar.gz $HOME/test_ecmwf_releases/
+cp libemos-4.4.2-Source.tar.gz $HOME/test_ecmwf_releases/
+cd $HOME/test_ecmwf_releases
+gunzip odb_api_bundle-0.15.2-Source.tar.gz
+tar -xvf odb_api_bundle-0.15.2-Source.tar
+gunzip libemos-4.4.2-Source.tar.gz
+tar -xvf libemos-4.4.2-Source.tar

ecBuild (2.4.0)

ecBuild is a set of cmake macros used by other ECMWF software packages.

cd $HOME/test_ecmwf_releases/odb_api_bundle-0.15.2-Source/ecbuild
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/ecbuild/2.4.0/gnu/
+make
+make check
+make install

eckit (0.14.0)

cd $HOME/test_ecmwf_releases/odb_api_bundle-0.15.2-Source/eckit
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/eckit/0.14.0/gnu/ -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake
+make -j 4
+make check
+make install

metkit (0.3.0)

cd $HOME/test_ecmwf_releases/odb_api_bundle-0.15.2-Source/metkit
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/metkit/0.3.0/gnu/ -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake/ -DECKIT_PATH=$HOME/metapp/eckit/0.14.0/gnu/
+make -j 4
+make check
+make install

libemos (4.4.2)

cd $HOME/test_ecmwf_releases/libemos-4.4.2-Source
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/libemos/4.4.2/gnu -DGRIB_API_PATH=PATH_TO_GRIBAPI
+make
+make check
+make install

"Main" software packages

These instructions assume you have access to the ODB-API and COPE ECMWF git repositories. The default install location for software packages is in $HOME/metapp/.

odb (40t1.01)

ECMWF maintain a "standalone" version of ODB software that is compiled with cmake. A 40t1 tag, 40t1.01, has been created to support the flavour of ODB used by harmonie-40h1.1.

cd $HOME/test_ecmwf_releases
+git clone https://dui@software.ecmwf.int/stash/scm/odb/odb.git
+cd $HOME/test_ecmwf_releases/odb
+git pull
+git archive --format=tar -o $HOME/test_ecSource/odb-40t1.01-Source.tar --prefix=odb-40t1.01/ 40t1.01
+cd $HOME/test_ecSource
+tar -xvf odb-40t1.01-Source.tar
+cd odb-40t1.01/
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/odb/40t1.01/gnu/ -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake/ -DODB_SCHEMAS="ECMA;CCMA"
+make -j 8
+make check
+make install

ODB API (0.15.4)

ODB API is a software developed at ECMWF for encoding and processing of observational data. It includes a SQL filtering and statistics engine, command line tools and APIs for C/C++, Fortran and Python. ODB API works with data format used in ECMWF observational feedback archive. Development of ODB API has been partially funded by the Met Office. More details here

ODB API provides is required by COPE as well as for ODB2 to ODB1 conversion.

cd $HOME/test_ecmwf_releases
+git clone https://dui@software.ecmwf.int/stash/scm/odb/odb_api.git
+cd $HOME/test_ecmwf_releases/odb_api
+git pull
+git archive --format=tar -o $HOME/test_ecSource/odb_api-0.15.4-Source.tar --prefix=odb_api-0.15.4/ 0.15.4
+cd $HOME/test_ecSource
+tar -xvf odb_api-0.15.4-Source.tar
+cd odb_api-0.15.4/
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/odb_api/0.15.4/gnu/ -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake/  -DECKIT_PATH=$HOME/metapp/eckit/0.14.0/gnu/ -DMETKIT_PATH=$HOME/metapp/metkit/0.3.0/gnu -DENABLE_MIGRATOR=ON -DODB_PATH=$HOME/metapp/odb/40t1.01/gnu -DENABLE_FORTRAN=ON -DENABLE_PYTHON=ON -DENABLE_NETCDF=ON
+make -j 8
+make check
+make install

b2o (40t1.01)

b2o is a library and command line tool to extract ODB data from BUFR files. A 40t1 tag, 40t1.01, has been created to support the flavour of ODB used by harmonie-40h1.1.

cd $HOME/test_ecmwf_releases
+git clone https://dui@software.ecmwf.int/stash/scm/cope/b2o.git
+cd b2o
+git pull
+git archive --format=tar -o $HOME/test_ecSource/b2o-40t1.01-Source.tar --prefix=b2o-40t1.01/ 40t1.01
+cd $HOME/test_ecSource
+tar -xvf b2o-40t1.01-Source.tar
+cd b2o-40t1.01/
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/b2o/40t1.01/gnu/ -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake/ -DLIBEMOS_PATH=$HOME/metapp/libemos/4.4.2/gnu/ -DECKIT_PATH=$HOME/metapp/eckit/0.14.0/gnu/ -DODB_API_PATH=$HOME/metapp/odb_api/0.15.4/gnu
+make -j 4
+make check
+make install

COPE

These instructions are based on building the develop branch of COPE. If you wish to use a tagged version you must use version 0.5.3 or greater.

cd $HOME/test_ecmwf_releases
+git clone https://dui@software.ecmwf.int/stash/scm/cope/cope.git
+cd $HOME/test_ecmwf_releases/cope
+git pull
+mkdir build
+cd build/
+cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/metapp/cope/develop/gnu -DCMAKE_MODULE_PATH=$HOME/metapp/ecbuild/2.4.0/gnu/share/ecbuild/cmake/ -DECKIT_PATH=$HOME/metapp/eckit/0.14.0/gnu/ -DODB_API_PATH=$HOME/metapp/odb_api/0.15.4/gnu -DB2O_PATH=$HOME/metapp/b2o/40t1.01/gnu -DCMAKE_PREFIX_PATH=$HOME/metapp/libemos/4.4.2/gnu/
+make -j 4
+# make check ## BROKEN DUE TO CHANGES TO ODB SCHEMA IN THIS BRANCH
+make install

COPE in HARMONIE system

The use of COPE in HARMONIE relies on ODB-API, b2o and COPE itself.

  • ODB-API tools must be included in PATH
  • The ECMA.sch used by COPE is maintained in the b2o version described above.
  • mf_vertco_type specific changes are included in the feature/mfvertcotype branch of COPE
  • scr/Cope includes the setting of the following environment variables which rely on COPE_DIR and B2O_DIR. These can be set in your Env_system file.
export COPE_DEFINITIONS_PATH=${COPE_DIR}/share/cope
+export ODB_SCHEMA_FILE=${B2O_DIR}/share/b2o/ECMA.sch
+export ODB_CODE_MAPPINGS=${B2O_DIR}/share/b2o/odb_code_mappings.dat
+export ODBCODEMAPPINGS=${B2O_DIR}/share/b2o/odb_code_mappings.dat
diff --git a/previews/PR1153/Observations/GNSS/index.html b/previews/PR1153/Observations/GNSS/index.html new file mode 100644 index 0000000000..a810aafda3 --- /dev/null +++ b/previews/PR1153/Observations/GNSS/index.html @@ -0,0 +1,9 @@ + +GNSS · Harmonie wiki
GitHub

GNSS ZTD observations

Introduction

The NRT GNSS delay data contain information about the amount of water vapour above the GNSS sites. E-GVAP European program’s aim is to provide its EUMETNET members with European GNSS delay and water vapour estimates for operational meteorology in near real-time. Currently, the E-GVAP network consists of more than 1500 GNSS sites.

  • E-GVAP Programme here

GNSS ZTD data

Raw data from GNSS sites are collected by a number of GNSS analysis centers, which process the data to estimate the Zenith Total Delays (ZTD) and other parameters. The ZTDs are then forwarded to a data server, for distribution to meteorological institutes. The observations are currently distributed from Met Office, in two different formats: BUFR that are distributed via GTS to the meteorological centers or in ASCII format, that may be download via ftp.

Preprocessing the GNSS ZTD data

The preprocessing of these data should be local, depending if you want to have them in BUFR or ASCII format. ASCII option needs a local script to get the files from Metoffice server and transform them from COST format (EGVAP) into OBSOUL format. (In this case there is an optional script inside scr directory in Harmonie called GNSStoOBSOUL that could transforms ascii into OBSOUL format).

Apart of the preprocessing, a White List of sites to be assimilated in your domain is needed. It will contain the values of:

   statid lat lon alt dts bias sd obserr

where statid is the name of the site (NNNNPPPP: NNNN=site PPPP=Procesing centre) , dts is the frequency in minutes between obs, and sd the standard deviation of that station and obserr the observation error. You are supposed to have calculated these values before launching the experiment.

Harmonie changes to assimilate GNSS ZTD data

scr/

  • Bator and Fetch_assim_data have the white list path.
  • Oulan : has the white list and gnss observation files paths and cat this one to the rest of conventional observation file.
  • include.ass: This script has two options about gnss bias correction: static bias correction (LSTATIC_BIAS) or variational bias correction (LVARBC_GNSS). For the first case, a fix bias value from each site is read from the White List and then substracted from the corresponding observation value. For the second case, VarBC, it is also needed to set in this script the cold start option.
    export GNSS_OBS=1            #GNSS
+export LSTATIC_BIAS=F        #Swich for bias correction or not,(T|F)
+export LVARBC_GNSS=T         #Swich for GNSS varbc
+export VARBC_COLD_START=yes  #yes/no

nam/ Here it should be the White list, called list.gpssol.201512 for example /src/arpifs/obs_preproc/

  • redgps.F90 : This routine is where the horizontal thinning is done (Cy40) , so the thinning distance could be selected here.

/src/blacklist/

  • mf_blacklist.b: here is posible to blacklist the gnss observations so to calculate the varbc coefficients. It can be done tuning to experimental the apdss variable.
diff --git a/previews/PR1153/Observations/Iasi/index.html b/previews/PR1153/Observations/Iasi/index.html new file mode 100644 index 0000000000..b41c4ffd9f --- /dev/null +++ b/previews/PR1153/Observations/Iasi/index.html @@ -0,0 +1,73 @@ + +IASI · Harmonie wiki
GitHub

IASI radiances (pre-) processing

Introduction

Typical IASI radiance data reception consists of a subset of 366 channels out of the full set of 8461. These cover the infrared absorption spectrum from 3.8 to 15.4 micrometers. In the context of NWP, the most useful IASI channels include (i) the temperature-sounding channels in the approximate channel index range 100-450, (ii) the humidity-sounding channels at 2800-3500 and 5000-5500 indices, and (iii) surface-sensing window channels at 500-1000. Most of the NWP impact from IASI is thought to come from group (i) and especially from the upper-tropospheric and lower-stratospheric channels in the range 200-300.

Including IASI radiances in a HARMONIE run

scr/include.ass

scr/include.ass should be edited to "switch on" the use of AMSUA (AMSU-A), AMSUB (AMSU-B/MHS):

export IASI_OBS=1             # IASI
+export ATOVS_SOURCE=mars       # local: EUMETCast;
+export IASI_SOURCE=ears        # mars:MARS | else: file in $OBDIR
+export IASI_RT_COEF=lblrtm     # genln2|kcarta|lblrtm
+[[  $IASI_OBS -eq 1  ]] && types_BASE="$types_BASE iasi"

Loading the IASI radiances

Data extracted from MARS

      elif [ "$base" = iasi  ] ; then
+      # IASI
+        if [ "$IASI_OBS" -eq 1 ]; then
+          echo "iasi     iasi     BUFR     iasi     ">>batormap
+          ln -sf "${HM_LIB}"/const/bator_param/param_bator.cfg.iasi param.cfg
+          if [ "$IASI_SOURCE" = mars ] ; then
+            ln -sf "$WRK"/splitObs/iasi ./BUFR.iasi
+          else
+            ln -sf $OBSDIR/iasi$DTG ./BUFR.iasi
+          fi
+        fi

Locally received data

Controlling the detection of cloud

IASI radiances are strongly influenced by cloud. Because of inaccurate forward modelling, large background errors in cloud fields, and non-linear effects, success in the use of IASI requires careful screening and removal of cloud-affected data. In the HARMONIE data assimilation system, the screening for cloud follows the method of McNally and Watts (2003). The power of this method lies in the use of a large number of individual channels such that much of the disturbing instrument noise can be smoothed out and the cloud radiative effect is therefore more easily detected.

Even if the active use of IASI is limited to relatively small number of channels (such as the 55-channel subset in MetCoOp in early 2021), it is advisable to include more than 100 channels in the cloud detection channel list. Furthermore, it is important that all these channels are subjected to VarBC. To achieve the latter, one needs to make sure that blacklisting for the cloud detection channels uses the fail(EXPERIMENTAL) syntax rather than fail(CONSTANT). The following excerpt from src/blacklists/hirlam_blacklist.b.data_selection_after_20140601 illustrates the concept:

    if (SENSOR = iasi) then
+
+      ! remove channels that are not used in either cloud detection
+      ! or minimization
+      if PRESS notin (38,   49,   51,   55,   57,   61,   63,   83,   85,   87,
+                     104,  109,  111,  116,  122,  128,  135,  141,  146,  148,
+                     154,  159,  161,  167,  173,  179,  180,  185,  187,  193,
+                     199,  205,  207,  210,  212,  214,  217,  219,  222,  224,
+                     226,  230,  232,  236,  239,  242,  243,  246,  249,  252,
+                     254,  256,  258,  260,  262,  265,  267,  269,  275,  278,
+                     280,  282,  284,  286,  288,  290,  292,  294,  296,  299,
+                     306,  308,  310,  312,  314,  316,  318,  320,  323,  325,
+                     327,  329,  331,  333,  335,  341,  345,  347,  350,  352,
+                     354,  356,  358,  360,  362,  364,  366,  369,  371,  373,
+                     375,  377,  379,  381,  383,  386,  389,  398,  401,  404,
+                     407,  410,  414,  416,  426,  428,  432,  434,  439,  445,
+                     457,  515,  546,  552,  559,  566,  571,  573,  646,  662,
+                     668,  756,  867,  921, 1027, 1133, 1191, 1194, 1271, 1805,
+                    1884, 1946, 1991, 2094, 2239, 2701, 2819, 2910, 2919, 2991,
+                    2993, 3002, 3008, 3014, 3098, 3207, 3228, 3281, 3309, 3322,
+                    3438, 3442, 3484, 3491, 3499, 3506, 3575, 3582, 3658, 4032)
+         then fail(CONSTANT); endif;
+
+      if PRESS notin (38,   51,   63,   85,  104,  109,  167,  173,  180,  185,
+                     193,  199,  205,  207,  212,  224,  230,  236,  239,  242,
+                     243,  249,  296,  333,  337,  345,  352,  386,  389,  432,
+                    2701, 2819, 2910, 2919, 2991, 2993, 3002, 3008, 3014, 3098,
+                    3207, 3228, 3281, 3309, 3322, 3438, 3442, 3484, 3491, 3499,
+                    3506, 3575, 3582, 3658, 4032)
+         then fail(EXPERIMENTAL);
+      endif;
+
+    endif;       ! SENSOR = IASI

Here we provide two lists of IASI channels. The first list includes all those channels that are either used in the cloud detection, or are intended for active assimilation (or both). The second list is a subset of the first and includes just those intended for active assimilation. Only those channels included in the latter list will have a significant weight during the assimilation process.

The control for the cloud detection happens via namelist file at nam/IASI_CLDDET.NL. The format of the namelist file is illustrated below:

&NAMCLDDET
+N__Band_Size(1)=145
+N__Bands(1:145,1) =
+  38,   49,   51,   55,   57,   61,   63,   83,   85,   87,
+ 104,  109,  111,  116,  122,  128,  135,  141,  146,  148,
+ 154,  159,  161,  167,  173,  179,  180,  185,  187,  193,
+ 199,  205,  207,  210,  212,  214,  217,  219,  222,  224,
+ 226,  230,  232,  236,  239,  242,  243,  246,  249,  252,
+ 254,  256,  258,  260,  262,  265,  267,  269,  275,  278,
+ 280,  282,  284,  286,  288,  290,  292,  294,  296,  299,
+ 306,  308,  310,  312,  314,  316,  318,  320,  323,  325,
+ 327,  329,  331,  333,  335,  341,  345,  347,  350,  352,
+ 354,  356,  358,  360,  362,  364,  366,  369,  371,  373,
+ 375,  377,  379,  381,  383,  386,  389,  398,  401,  404,
+ 407,  410,  414,  416,  426,  428,  432,  434,  439,  445,
+ 457,  515,  546,  552,  559,  566,  571,  573,  646,  662,
+ 668,  756,  867,  921, 1027, 1133, 1191, 1194, 1271, 1805,
+1884, 1946, 1991, 2094, 2239
+/

Here we specify a list of 145 channels to be included in "band 1" of the cloud detection, i.e., in the main cloud detection channel band. The setup of the cloud detection involves not just the channel list but several additional tuning parameters that can be modified to make the screening more or less conservative. The default settings are specified in src/arpifs/obs_preproc/cloud_detect_setup.F90. A comprehensive description of the cloud detection scheme, including explanations of the various tuning parameter values, is given at the NWPSAF web site https://nwp-saf.eumetsat.int/site/software/aerosol-and-cloud-detection/documentation/.

Log file of the Screening task will indicate whether the formatting of the namelist file is appropriate:

 READING CLOUD DETECTION FILE FOR IASI
+ IASI  CLOUD DETECTION FILE READ OK

In case of an error, the following is printed instead:

 READING CLOUD DETECTION FILE FOR IASI
+ PROBLEM READING IASI CLOUD DETECTION FILE: Using Default Values

The third possibility is that the namelist file does not appear in the working directory, in which case the printout statement is this:

 READING CLOUD DETECTION FILE FOR IASI
+ NO IASI  CLOUD DETECTION FILE : Using Default Values

Please note that the use of the "Default Values" is generally not a desired outcome. This is because many of the cloud detection channels in the default list (see src/arpifs/obs_preproc/cloud_detect_setup.F90) are sensitive to higher stratosphere and therefore may be severely affected by the relatively low model top of limited-area HARMONIE systems.

References:

McNally, AP, and PD Watts, 2003: A cloud detection algorithm for high-spectral-resolution infrared sounders. Quarterly Journal of the Royal Meteorological Society, 129, 3411-3423, doi:10.1256/qj.02.208.

diff --git a/previews/PR1153/Observations/Modes/index.html b/previews/PR1153/Observations/Modes/index.html new file mode 100644 index 0000000000..3d42e0741c --- /dev/null +++ b/previews/PR1153/Observations/Modes/index.html @@ -0,0 +1,23 @@ + +Modes · Harmonie wiki
GitHub

Mode-S Enhanced Surveillance

Introduction

From http://mode-s.knmi.nl:

A novel method to measure wind and temperature is related to tracking and ranging by an enhanced surveillance (EHS) air traffic control (ATC) radar.

Modern aircraft carry sensors to measure the Mach number (using pitotstatic probe) and the total air temperature (T). An EHS radar interrogates all aircraft in sight in a selective mode (Mode-S), on which the aircraft replies with a message containing, for example, magnetic heading, airspeed and Mach number. From this information wind and temperature can be extracted.

Mode-S EHS data

Description

The data description is available here: http://mode-s.knmi.nl/data/

Access

Access to MUAC Mode-S EHS data can be requested from KNMI by signing a Non Disclosure Agreement. Send an e-mail to mode-s@knmi.nl with a request like this:

Dear Sir/Madam,
+
+On behalf of MyNHMS, My NHMS Full Name, I would like to request access to Mode-S EHS derived meteorological data made available by Maastricht Upper Area Centre (MUAC) of EUROCONTROL and KNMI.
+
+MyNHMS intend to use these data for NWP (Numerical Weather Prediction) research and development with the hope of assimilating these data in operational NWP system(s) in the near future.
+
+My contact details are as follows:
+Name
+Address
+e-mail
+Telephone
+
+Yours Sincerely,
+Name

Prepare the BUFR data

ftp server

Mode-S EHS bufr, netCDF and ASCII data are available on the KNMI ftp server, ftpservice.knmi.nl. The ASCII and netCDF file contain all observations, while BUFR file contains about 10% of the available observations. The thinning is for descending and ascending aircraft evry 300m in pressure altitude, and for level flight one observation per 2 minutes.

BUFR data sub-category change

At present the BUFR-sub category needs to be changed: bufr_set, an ecCodes tool, can be used to change the data sub-category from 146 to 147. This is required by HARMONIE.

bufr_set -sdataSubCategory=147 Mode-S-EHS_MUAC_20170507_2345.bufr Mode-S-EHS_MUAC_20170507_2345_147.bufr

HARMONIE changes

scr/include.ass

In scr/include.ass should be edited to "switch on" the use of Mode-S EHS data:

export MODESEHS_OBS=1          # Mode-S EHS

Processing using Bator

The BUFR template (WMO AMDAR v7) used by your Mode-S EHS data should be defined in the param.cfg file used by Bator. param.cfg files for Bator are in the nam namelist directory. The modes param.cfg template should be something like this:

BEGIN amdar
+
+END

Processing using Oulan

The processing of Mode-S EHS BUFR using Oulan is controlled by the following namelist entry in scr/Oulan:

LMODES=.FALSE.

Thinning of Mode-S

Thinning of a bufr file

A collection of python scripts which directly thin the Mode-S csv and bufr file is uploaded here https://gitlab.com/haandes/emaddc-public.

E.g. the emaddcc-thinning4.py script works with the large Mode-S_EMADDC_KNMI_oper_${DTG}.bufr file and thins the data in 4 dimensions, horizontal, vertical and in observation time closest to analysis time. Emaddcc-thinning4.py currently assumes valid temperature and wind observations at the same time and fix vertical thinning intervals of:

[300, 300, 600, 1000] m

which corresponds to the heights of the lowest, second lowest, third lowest and all above boxes. The horizontal box width is variable and in the following example 40 km.

The .py script is triggered in scr/Prepare_ob, with:

  nMsgs=`bufr_count $OBDIR/Mode-S_EMADDC_KNMI_oper_${DTG}.bufr`
+  time python3 $HM_LIB/scr/emaddcc_thinning4.py --infile $OBDIR/Mode-S_EMADDC_KNMI_oper_${DTG}.bufr --box_width 40 --DTG $DTG --nMsgs $nMsgs --outfile emaddcc_thinned.bufr
+  cat emaddcc_thinned.bufr  /dev/null >> $BUFRFILE

It takes about 1:35 min on Atos-Bologna and results in reduction of Mode-S data by a factor of 4-5.

diff --git a/previews/PR1153/Observations/ObservationData/index.html b/previews/PR1153/Observations/ObservationData/index.html new file mode 100644 index 0000000000..12d35cc39b --- /dev/null +++ b/previews/PR1153/Observations/ObservationData/index.html @@ -0,0 +1,10 @@ + +ObservationData · Harmonie wiki
GitHub

Observation data

In off-line experiments the Prepare_ob script extracts observations from a data archive, e.g from MARS archive at ECMWF platform, or from existing observation files available locally.

ECMWF

At ECMWF, the HARMONIE script prepares the retrieval (retrin) file for MARS request in scr/WriteMARSreq is executed by scr/Prepare_ob.

WriteMARSreq -d $DATE -t $TIME -r $RANGE -o $OBSLIST -m ./retrin -z $BUFRFILE -g $GEOL

The variables above denote

  • DATE - analysis date
  • TIME - analysis time
  • RANGE - extraction time interval
  • OBSLIST - list of the observations to be extracted according to MARS definition;
  • BUFRFILE - name of the extracted BUFR file
  • GEOL - Extraction of the model domain properties from the climate file as follows
    $BINDIR/domain_prop $CLIMDIR/m$MM -f -MAX_EXT > foo
+   EASTEC=$( tail -1 foo | head -1 | sed 's/ //g' )
+   NORTHEC=$( tail -2 foo | head -1 | sed 's/ //g' )
+   WESTEC=$( tail -3 foo | head -1 | sed 's/ //g' )
+   SOUTHEC=$( tail -4 foo | head -1 | sed 's/ //g' )

LOCAL

Otherwise, this step consists of fetching (or waiting for) the observations stored in $OBDIR defined in ecf/config_exp.h . In that case one can use the command "cat" to merge different observations into one BUFR file, ob${DTG}. In general, HIRLAM services are adopting SAPP, ECMWF's scalable acquisition and pre-processing system, to process (conventional) GTS reports and other observational data for use in operational NWP. SAPP produces BUFR encoded in the same way as observational BUFR data available in the MARS archive.

diff --git a/previews/PR1153/Observations/ObservationPreprocessing/index.html b/previews/PR1153/Observations/ObservationPreprocessing/index.html new file mode 100644 index 0000000000..3ec6be8dca --- /dev/null +++ b/previews/PR1153/Observations/ObservationPreprocessing/index.html @@ -0,0 +1,6 @@ + +Preprocessing · Harmonie wiki
GitHub

HARMONIE Observation Preprocessing

Introduction

The following figure shows different schematic steps in the HARMONIE data assimilation system. It is worth mentioning some differences between the observation pre-processing systems used by ECMWF, Météo France, and HIRLAM. Some of these differences are listed below:

AROME/HARMONIE-AROMEIFS
data format/contentBUFR, but sometimes with own tableBUFR with WMO code
creation of ODB databaseBator converts BUFR to ODBb2o/bufr2odb converts BUFR to ODB
blacklisting techniqueBator (LISTE_LOC, LISTE_NOIRE_DIAP), Screening (hirlam_blacklist.B) & Minim (NOTVAR namelist)Screening only

Observation file preparation

Preprocessing Software

  • Bator: Bator - reads BUFR/HDF5/OBSOUL observation data and writes ODBs used by data assimilation

Other possibilities include:

  • Oulan: Oulan - Converts conventional BUFR data to OBSOUL file that is read by BATOR
  • Cope: Cope - preparation of ODBs used by data assimilation (in development)
diff --git a/previews/PR1153/Observations/Oulan/index.html b/previews/PR1153/Observations/Oulan/index.html new file mode 100644 index 0000000000..6d502c2ddb --- /dev/null +++ b/previews/PR1153/Observations/Oulan/index.html @@ -0,0 +1,32 @@ + +Oulan · Harmonie wiki
GitHub

OBSOUL creation: Oulan

General Description

The pre-processing step creates ODB (Observational Data Base) from various observation data files possibly in different formats.

  • Software: The programs used for pre-processing (Shufflebufr, oulan and BATOR) are not part of the IFS code. oulan is software developed at Météo France to extract observations from their local database (BDM). The output of oulan (OBSOUL) is one of the inputs of BATOR. BATOR is also software developed at Météo France to generate the ODB (Observational !DataBase) database for the ARPEGE/ALADIN/HARMONIE analysis system. ODB is a tailor made database software developed at ECMWF to manage very large observational data volumes assimilated in the IFS 4DVAR system, and to enable flexible post-processing of this data. We use oulan to generate an OBSOUL file from different BUFR files (note you can easily change the oulan program to handle data in different format than BUFR. For example in OPLACE data processing some files are in netCDF format). OBSOUL file is an ASCII formatted file, the content of which is similar to that of the CMA (Central Memory Array, packing format actually in use in the HIRLAM data assimilation system). Our version of ouland is placed under “util” directory in the repository. HARMONIE BATOR originates from the MF export-pack. The figure bellow describes the mechanism of the observation pre-processing in HARMONIE DA. To sum it up, !ShuffleBufr splits different observations into BUFR files, then oulan creates the OBSOUL file, and BATOR creates the ODB file using satellite BUFR/GRIB/BIN files and the OBSOUL one.
  • Compilation: oulan, Shufflebufr are compiled using gmkpack or makeup.
  • Scripts: Oulan
  • Input/output
  • oulan input: BUFR files; output: the OBSOUL file in ASCII format

ShuffleBufr

ShuffleBufr splits different observations into separate BUFR files according the IFS observation type/sub-type definition. Some of them (essentially those of conventional observations) are then fed to OULAN; the others go directly into BATOR.

    PROGRAM SHUFFLEBUFR
+    Split and shuffle BUFR file into  specific BUFR files for OULAN
+
+    Usage: SHUFFLEBUFR -i <bufr_file> [-s1|-s2|-s3]  [-a] [-r]
+
+           -s1 : Synop ship will be extracted in <synop>
+           -s2 : Synop ship will be extracted in <buoy>
+           -s3 : Synop ship will be extracted in <ship>
+
+           Nota Bene: If -s1,-s2 or -s3 are not specified
+                      synop_ship will not be extracted
+
+           -a  : Extracts ATOVS in files amsua and amsub
+
+           -r  : Extracts also record messages (synop)

The splitting is done with the following command ($BUFRFILE is a file containing all observations) in the Oulan script:

      $BINDIR/ShuffleBufr -i ${BUFRFILE} -s3 -a

oulan

oulan reads (primarily conventional observation) BUFR data and converts them into ASCII format OBSOUL files. Note, we can make observation selection in oulan. More details about how to do data selection can be found here (Randriamampianina, ALADIN/HIRLAM Workshop 2005)

  1. namelist description:

    NADIRS
    ANZA=90.If LZONEA is true then only extract observations south of 90N
    ALASZA=0.If LZONEA is true then only extract observations north of 0
    ALOEZA=-180.If LZONEA is true then only extract observations west of 180W
    ALOOZA=180.If LZONEA is true then only extract observations west of 180E
    LNEWSYNOPBUFR=.FALSE.Process new format BUFR SYNOP experimental
    LNEWSHIPBUFR=.FALSE.Process new format BUFR SHIP experimental
    LNEWBUOYBUFR=.FALSE.Process new format BUFR BUOY experimental
    LNEWTEMPBUFR=.FALSE.Process new format BUFR TEMP experimental
    LACAR=.TRUE.Process ACARS BUFR data
    LAIREP=.TRUE.Process AIREP BUFR data
    LAMDAR=.TRUE.Process AMDAR BUFR data
    LBUOY=.TRUE.Process BUOY BUFR data
    LEUROPROFIL=.FALSE.Process European Profiler BUFR data
    LPILOT=.TRUE.Process PILOT BUFR data
    LRH2Q=.FALSE.Extract 2m RH from SYNOP, BUOY and TEMP BUFR data
    LSHIP=.TRUE.Process SHIP BUFR data
    LSYNOP=.TRUE.Process SYNOP BUFR data
    LTEMP=.TRUE.Process TEMP BUFR data
    LTEMPDROP=.TRUE.Process DROPTEMP BUFR data
    LTEMPSHIP=.TRUE.Process TEMPSHIP BUFR data
    LTOVSAMSUA=.FALSE.Process AMSUA data
    LTOVSAMSUB=.FALSE.Process AMSUB data
    LTOVSHIRS=.FALSE.Process HIRS data
    LZONEA=.TRUE.Switch to extract data in defined lat-lon domain (N,S,E,W)
    NDATE=DDATEOBSOUL Date
    NDIFFM1=30Define analysis window (T-NDIFFM1)
    NDIFFM2=300Define analysis window (T-NDIFFM2)
    NDIFFP1=30Define analysis window (T+NDIFFP1)
    NDIFFP2=259Define analysis window (T+NDIFFP2)
    NINIT=0flag used by oulan to prevent writing if problem is found
    NRESO=HHOUROBSOUL Hour
    **NANBOB*Namelist to define number of observations to be extracted
    NBACAR=750000Number of ACAR obs
    NBAIREP=750000Number of AIREP obs
    NBAMDAR=750000Number of AMDAR obs
    NBBUOY= 4000Number of BUOY obs
    NBEUROPROFIL= 15000Number of European profiler obs
    NBPILOT= 2000Number of PILOT obs
    NBSHIP= 30000Number of SHIP obs
    NBSYNOP= 60000Number of SYNOP obs
    NBTEMP= 2000Number of Land TEMP obs (since r14078)
    NBTEMPDROP= 1000Number of DROPTEMP obs (since r14078)
    NBTEMPSHIP= 1000Number of Ship TEMP obs (since r14078)
    NBTOVSAMSUA= 80000Number of AMSUA obs
    NBTOVSAMSUB= 80000Number of AMSUB obs
    NBTOVSHIRS= 8000Number of HIRS obs

  2. make a namelist

      NAMELIST=$WRK/$WDIR/namelist_oulan
+  Get_namelist oulan $NAMELIST
+  sed -e "s/DDATE/$SDATE/" \
+      -e "s/HHOUR/$SHOUR/"
+      -e "s/SALOOZA/$OULWEST/"  \
+      -e "s/SALANZA/$OULNORTH/"  \
+      -e "s/SALOEZA/$OULEAST/"  \
+      -e "s/SALASZA/$OULSOUTH/" \
+      -e "s/SLNEWSYNOPBUFR/$SLNEWSYNOPBUFR/" \
+      -e "s/SLNEWSHIPBUFR/$SLNEWSHIPBUFR/" \
+      -e "s/SLNEWBUOYBUFR/$SLNEWBUOYBUFR/" \
+      -e "s/SLNEWTEMPBUFR/$SLNEWTEMPBUFR/" \
+      ${NAMELIST} >NAMELIST

  3. run oulan

    $BINDIR/oulan

  4. process GNSS data. If $GNSS_OBS is set to 1 then GNSS observations are added to the OBSOUL file and whitelisting is carried out using PREGPSSOL

New BUFR templates

Valid for HARMONIE 40h1 and later

The use of new format (GTS WMO) BUFR is controlled in scr/include.ass by LNEWSYNOPBUFR, LNEWSHIPBUFR, LNEWBUOYBUFR, LNEWTEMPBUFR (set to 0 or 1). These environment variables control namelist settings in the Oulan script. GTS and ECMWF BUFR were used to guide the code changes so Oulan assumes either "flavour" of BUFR. Local changes may be required if your locally produced BUFR, in particular section 1 data sub-type settings, do not follow WMO and/or ECMWF practices.

The ECMWF wiki contains updates regarding the quality of the new BUFR HR observations. See the following ECMWF wiki pages for furher information.

diff --git a/previews/PR1153/Observations/RadarData/index.html b/previews/PR1153/Observations/RadarData/index.html new file mode 100644 index 0000000000..a133a34be2 --- /dev/null +++ b/previews/PR1153/Observations/RadarData/index.html @@ -0,0 +1,6 @@ + +Radar · Harmonie wiki
GitHub

Assimilation of Radar Data

This documentation outlines how to retrieve, process and assimilate HDF5 radar data

HARMONIE compilation

HIRLAM have made code changes to BATOR to allow the direct reading of HDF5 radar data and conversion to ODB suitable for use in the HARMONIE data assimilation system. If you wish to use these changes you must compile HARMONIE with support for HDF5. This requires the addition of -DUSE_HDF5 to the FDEFS in your makeup config file as well has adding hdf5 to EXTMODS. util/makeup/config.ECMWF.atos.gnu is an example of a makeup config file

Format

The BATOR code assumes the HDF5 radar data being read uses the OPERA Data Information Model (ODIM). See https://www.eumetnet.eu/wp-content/uploads/2021/07/ODIMH5v2.4.pdf for further information.

Data retrieval

Quality-controlled radar data can be retrieved from local archives, the OPERA Nimbus server (contact: Lukas Tuechler (Geosphere)), or the ODE (OPERA Development Environment) server (contact: Günther Haase (SMHI)).

Data processing

The HARMONIE script system requires that the OPERA HDF5 data files be stored in RADARDIR (defined in ecf/config_exp.h ) and have a file name using the format: ${HDFID}_qcvol_${DATE}T${HH}00.h5 where:

  • HDFID is a 5 digit OPERA radar identifier
  • DATE is the date
  • HH is the hour

Common pitfalls

  • Forgetting to add -DUSE_HDF5 correctly to your config file
  • Incorrect RADARDIR
  • Incorrect file names
  • Incorrect format entered in refdata - BATOR is quite strict about how it reads the information in refdata:
02918zh  HDF5     radarv           20100808 03

Further reading

Martin Ridal's radar data assimilation presentation

diff --git a/previews/PR1153/Observations/SYNOP/index.html b/previews/PR1153/Observations/SYNOP/index.html new file mode 100644 index 0000000000..28e9074cb9 --- /dev/null +++ b/previews/PR1153/Observations/SYNOP/index.html @@ -0,0 +1,46 @@ + +SYNOP · Harmonie wiki
GitHub

SYNOP observations

This page documents how SYNOP observations (z, ps, u10m, t2m, rh2m) are assimilated. An overview of GTS messages, BUFR, conversion to ODB and screening options is provided.

SYNOP on the GTS

BUFR

Conversion to ODB

At this stage we decide whether we want to assimilate geopotential, calculated from mean sea level pressure (MSLP) or surface pressure (Ps), or Ps available in the SYNOP BUFR report.

Surface pressure

In the context of Bator:

  • The BUFR namelist the SYNOPPSMETHOD entry provides an option to assimilate MSLP observations only (MSL), Ps observations only (SFC) or take Ps then MSLP in that order (ANY). 

    &BUFR
+SYNOPPSMETHOD='MSL',

  • The Bator param file can also used to read MSLP/Ps or not. If the values entry, NN, is set to -1 then the value will not be read by Bator.

    values    NN  010004 Pressure
+values    NN  010051 Pressure reduced to mean sea level

  • Z or Ps values are blacklisted in the LISTE_LOC read by Bator. By default, Ps (110) is blacklisted for SYNOP (obstype=1) and BUOY (obstype=4). These "110" values should be changed to "1" in order to blacklst Z instead of Ps.

    N  1                  108
+N  1                  110
+N  4                  110

Screening

Blacklisting

  • t2m, rh2m not assimilated when soe, solar elevation, is less than 10.
  • u10m/v10m not assimilated if codetype is 11/14/16/170 (SYNOP LAND)
  • u10m/v10m not assimilated if land-sea mask is > 0
  • u10m/v10m not assimilated if station and model orography differ by more than 200 m
  • rh2m not assimilated if codetype is 21/22/23/24/182 (SYNOP SHIP)
  • ps/z not assimilated if model orography is greater than 500 m
if (OBSTYP = synop) then
+
+    if VARIAB in (t2m,rh2m) then
+        if (soe < 10.0 ) then fail(CONSTANT); endif;
+    endif;
+
+    if VARIAB in (u10m, v10m) then
+        if (SPECIFIC > 0.0 ) then
+           if (CODTYP in (11, 14, 16, 170)) then fail(CONSTANT); endif;
+           if (RLSMASK > 0.) then fail(CONSTANT); endif;
+         end if;
+        if (STALT >= 0.) and (abs(STALT - MODORO) > 200.0) then fail(CONSTANT); endif;
+    endif;
+
+    if VARIAB in (rh, q) then
+        if (PRESS <= 300.) then fail(CONSTANT); endif;
+    endif;
+
+    if (VARIAB = rh2m) then
+        if (CODTYP in (21, 22, 23, 24, 182)) then fail(CONSTANT); endif;
+        if (RLSMASK < 0.5) then fail(CONSTANT); endif;
+        if (STALT >= 0.) and (abs(STALT - MODORO) > 200.0) then fail(CONSTANT); endif;
+    endif;
+
+    if VARIAB in (ps, z) then
+        if (STALT >= 500.) then fail(CONSTANT); endif;
+    endif;
+
+endif;

Screening settings

Namelist settings ...

Variational bias correction of SHIP surface pressure observations

There is a possibility to activate variational bias correction for SHIP surface pressure observations. This is done by in harmonie_namelists.pm minimisation part change LBC_SFCOBS_PS and LBC_SFCOBS_SHIPPS to true as follows:

NAMVARBC_SFCOBS=>{
+    'LBC_SFCOBS_PS' => '.TRUE.,',
+    'LBC_SFCOBS_SHIPPS' => '.TRUE.,', 
+    'LBC_SFCOBS_APD' => '.TRUE.,',
+    'nbg_sfcobs_min_apd'=> '15,',
+    'nbg_sfcobs_ndays_apd'  => '15,',
+    'nbg_sfcobs_min_ps'=> '15,',
+    'nbg_sfcobs_ndays_ps'  => '15,',
+},

In addition you need to make sure that surface pressure variable is 'ps' and not 'z' for ship surface pressure subtypes, as explained above. Variational bias correction is only prepared for 'ps' not 'z'.

diff --git a/previews/PR1153/Observations/Scatt/index.html b/previews/PR1153/Observations/Scatt/index.html new file mode 100644 index 0000000000..0c8962a970 --- /dev/null +++ b/previews/PR1153/Observations/Scatt/index.html @@ -0,0 +1,7 @@ + +Scatt · Harmonie wiki
GitHub

Scatterometers

Background

The EUMETSAT OSI SAF produces different scatterometer wind products at KNMI and more will become available in 2019:

  • C-band ASCAT-A/B/C overpassing at 9:30/21:30 Local Solar Time (LST), since 2007/2011/2019;
  • Ku-band !ScatSat overpassing at 8:45/20:45 LST, since 2017;
  • Ku-band HY2A/B overpassing at 6:00/18:00 LST, since 2013 (n.a. in NRT)/2019;
  • Ku-band CFOSAT overpassing at 7:00/19:00 LST, expected 2019;
  • Ku-band OSCAT3 overpassing at 12:00/24:00, expected 2019;
  • C/Ku-band !WindRad overpassing at 6:00/18:00, expected 2020.

Note that the products have different ambiguity and noise properties, that are handled in the generic KNMI processing. We distinguish two types of scatterometers with (1) static beams (ASCAT) and with (2) rotating beams (the rest).

In the ECMWF model (on ~200 km scales) the availability of three hourly observations is motivated from the experience of assimilating ASCAT and OSCAT (2.5 hours overpass time difference), which showed double the impact of assimilating ASCAT only. So, they appear as independent data sources for the model.

Since ASCAT overpasses only twice per day we cannot fulfil the temporal requirement and can therefore not expect to analyze open ocean surface winds deterministically at 25 km scales with ASCAT only. Based on this analysis we should therefore focus on larger than 25 km scales (as ECMWF does), also for Harmonie, so typically focus on 100 km scales. This means that scales between ~25-100 km in Harmonie over open sea is mostly noise, which can be removed through supermodding (ref: Mate Mile's project). Note that more scatterometers will be available next year at more times a day (see above).

ECMWF is testing ASCAT with different aggregation, thinning and weights in order to optimize scatterometer data assimilation, which results may be useful for HARMONIE data assimilation strategy as well.

ASCAT

  1. ASCAT-12.5km (or ASCAT-coastal) data are available on a 12.5 km grid.
  2. The resolution of ASCAT-12.5km is about 25 km (through the application of a Hanning with tails extending beyond 12.5 km)
  3. As a result, the errors of neighbouring observations are correlated. For the 6.25 km product:
    • along-track wind component l : neighbor 0.60; next-neighbor 0.19; next-next neighbor 0.02; total noise variance 0.385
    • cross-track wind component t : neighbor 0.51; next-neighbor 0.11; next-next neighbor 0.00; total noise variance 0.214
    This agrees well with the footprint overlap (see point 2). We expect similar values for ASCAT-12.5km, but this could be easily assessed more dedicated.
  4. Triple collocation tests show obervation error standard deviation for ASCAT-12.5km (or ASCAT-coastal) of ~ 0.7 m/s for u and v.
  5. The effective model resolution of Harmonie (with 2.5 km grid) is about 20-25 km.

Based on this one may conclude that the resolution of ASCAT-12.5km and Harmonie is about the same, so the representativeness error is negligible, and the total error equal to the observation error, i.e., 0.7 m/s and use this value for giving weight to ASCAT in Harmonie.

However, we think this will not give the best impact. This is because if you want to analyse model states on 25 km scales (Harmonie effective resolution) deterministically, you need a forcing term which accounts for this resolution. Forcing can be either from orography (over land only) or observations. So, over sea we have to rely on the density of the observation network. To analyse scales up to 25 km deterministically over sea requires high density observations both in space and time, i.e., for the latter at least every hour. This is corroborated by studies with ASCAT A and B, separated in time by 50 minutes, showing high correlation of ASCAT divergence and convergence with moist convection rain, but negligible correlation between convergence or divergence of the two passes.

Since ASCAT overpasses only twice per day we can not fulfil the temporal requirement and can therefore not expect to analyse ocean surface winds deterministically at 25 km scales with ASCAT only. Based on this analysis we should therefore focus on larger than 25 km scales (as ECMWF does), also for Harmonie, so typically focus on 100 km scales. This means that scales between ~25-100 km in Harmonie over sea is mostly noise, which can be removed through supermodding, i.e., the project where Mate Mile is working on.

KNMI are waiting for a data feed from EUMETSAT. Level 1 ASCAT data available 14 March 2019 here

Other scatterometers

  1. 25km data are generally available on a the satellite swath grid of WVCs
  2. The resolution of this 25 km data is around 100 km (through the application of a spatial filter that successfully suppresses both wind direction ambiguities and noise)
  3. As a result, the errors of neighboring observations are correlated over a distance of 100 km or more
  4. Triple collocation tests show observation error standard deviation ~ 0.7 m/s for u and v
  5. Biases exist at warm and cold SST of up to 0.5 m/s, which are being corrected; also winds around nadir and, to a lesser extent, in the outer swath are sometimes biased; the IFS takes account of this, but may need retuning for CFOSAT

Further reading

More information is available on the OSI SAF wind site in the form of training material, product manuals, scientific publications, verification reports and monitoring information. Support and services messages for all products can be obtained through scat at knmi.nl .

The EUMETSAT NWP SAF provides the following reports:

Model

Enable assimilation

  • Set SCATT_OBS=1 in scr/include.ass
  • Ensure ascat${DTG} files are available in $OBDIR (defined in ecf/config_exp.h )

Technical information

  • Referred to as NSCAT3 in arpifs (see src/arpifs/module/yomcoctp.F90)
  • From https://apps.ecmwf.int/odbgov
    • obstype=9
    • codetype=139
    • sensor=190
    • varno=125/124 for ambiguos u/v wind component

Issues (CY40/CY43)

Thinning: NASCAWVC

  • Number of ASCAT wave vector cells
  • Defined in src/arpifs/module/yomthlim.F90
  • Default, set in src/arpifs/obs_preproc/sufglim.F90, is 42 (for 25-km product)
  • Set to 82 for 12.5-km scatterometer product in nam/harmonie_namelists.pm (possibly also in sufglim.F90. To be checked)

Observation error

  • Set by Bator (src/odb/pandor/module/bator_init_mod.F90) u_err=1.39, v_err=1.54
  • Suggested values from KNMI: u_err=1.4, v_err=1.4
  • ZWE=2.0 set in src/arpifs/obs_preproc/nscatin.F90 but not used (I think)
  • ObsErr in Jo-table is RMS of all ASCAT obs_error values (SQRT(0.5*(u_err^2 + v_err^2)
  • sigma_o can be set by Bator in NADIRS using NADIRS:
    ECTERO(9,139,125,1) = 1.39_JPRB
+ECTERO(9,139,124,1) = 1.54_JPRB
diff --git a/previews/PR1153/Observations/Seviri/index.html b/previews/PR1153/Observations/Seviri/index.html new file mode 100644 index 0000000000..161401d97b --- /dev/null +++ b/previews/PR1153/Observations/Seviri/index.html @@ -0,0 +1,40 @@ + +SEVIRI · Harmonie wiki
GitHub

SEVIRI

Background

The Spinning Enhanced Visible and InfraRed Imager (SEVIRI) is MSG's primary instrument and has the capacity to observe the Earth in 12 spectral channels. Eight of the channels take measurements in the infrared band of the spectra, the rest for the visible channels (one of them in high resolution). The horizontal resolution is 3 km, except for the high resolution visible channel that is 1 km. Time resolution is one image every 15 minutes.

SEVIRI ChannelsMain characteristics
IR 3.9Used at night to detect fog and very low clouds. Window channel of CO2
WV 6.2Water Vapour Channel
WV 7.3Water Vapour Channel
IR 8.7Window channel of H2O
IR 9.7Ozone absorption channel. Not suitable to data assimilation
IR 10.8Window channel of H2O
IR 12.0Window channel of H2O
IR 13.4CO2 absorption band

SEVIRI channels and their characteristics

Normalised Weighting Functions

Figure of normalised weighting functions

See Eumetsat seviri for more detail on the instrument.

Radiance data from geostationary satellites have been assimilated in global numerical weather prediction models for some time (Köpken et al., 2003; Szyndel et al., 2004). Their high spatial and temporal resolution are particularly beneficial on global scales and in regions with a paucity of ground based measurements. For example, the assimilation of radiance data from Meteosat-8 and Meteosat-11 continue to be of value to the ECMWF's IFS data assimilation system (Burrows, 2020). Similarly, limited area models can benefit from these radiances.

Preparing data

This describes the work flow for preparing SEVIRI observations suitable for assimilation.

Radiances are processed in order to reduce the size and change the format of the files using the NWC-SAF products to discriminate between clear-sky and cloudy pixels.

Links to NWC-SAF software and description:

Model settings

Enable assimilation

  • Set SEVIRI_OBS=1 in scr/include.ass
  • Ensure seviri${DTG}.nc files are available in $OBDIR (defined in ecf/config_exp.h )

Preparing ODB

The processing (NetCDF –> ODB) by Bator is controlled by namelist entries. A brief some of the more relevant namelist entries is provided here.

NADIRS

Namelist entryTypeDescription
InbTypeNetcdfIntegerNumber of NETCDF templates to read in the param.cfg file. Default value : 0
MinSeviriSatidIntegerLowest SID waited in the SEVIRI data (NETCDF format). It is used as lower bound when allocating NSEVIRI type. Default value : 0
MaxSeviriSatidIntegerHighest SID waited in the SEVIRI data (NETCDF format). It is used as upper bound when allocating NSEVIRI type. Default value : 0
MinMtvzaSatidIntegerLowest SID waited in the MTVZA data (HDF5 format). It is used as lower bound when allocating HMTVZA type. Default value : 0
MaxMtvzaSatidIntegerHighest SID waited in the MTVZA data (HDF5 format). It is used as upper bound when allocating HMTVZA type. Default value : 0

e.g.

&NADIRS
+  InbTypeBufr = 200,
+  InbTypeNetcdf = 1,
+  InbTypeHdf5 = 2,
+  MinSeviriSatid = 54,
+  MaxSeviriSatid = 70,
+  MinMtvzaSatid = 320,
+  MaxMtvzaSatid = 320,
+  SIGMAO_COEF(7) = 1.15,
+  SIGMAO_COEF(9) = 1.,
+  ECTERO(9,6,125,3) = 1.24,
+  ECTERO(9,6,124,3) = 1.34,
+  LATMS_MANDATORY_AVG = .TRUE.,
+  LVARBC_APD = .FALSE.,
+/

NetCDF

Main key%ComponentTypeDescription
NSEVIRI(:)%SautintegerArray of SEVIRI data type. The indexes match SIDs.
NSEVIRI(:)%NbChannelsintegerObservations sampling (1/n). Default value : 1.
NSEVIRI(:)%Channels(:)integerNumber of wished channels. Default value : 0.
NSEVIRI(:)%NbSuppintegerArray of wished channels number. Default value : -9
NSEVIRI(:)%NamChannels(:)stringNumber of meta-data per observation ( ZENTSUP). Default value : 0.
NSEVIRI(:)%NcmlNamestringOne dimension array of variable labels containing Tb data. Each label index must be the same as the index of its channel number used in channels(:) component. Default value : ‘’.
NSEVIRI(:)%NwcSafNamestringLabel of “NetCDF multicanal source” general attribute. Default value : ‘’.
NSEVIRI(:)%NamLatstringLabel of “nwcsafalgorithm “ general attribute. Default value : ‘’.
NSEVIRI(:)%NamLonstringLabel of the “lat” variable. Default value : ‘’.
NSEVIRI(:)%NamTimestringLabel of the “lon” variable. Default value : ‘’.
NSEVIRI(:)%NamSatAzimuthstringLabel of the variable which gives observation data in second since 01/01/1970 00h. Default value : ‘’.
NSEVIRI(:)%NamSatZenithstringLabel of the variable containing satellite azimuth angles. Default value : ‘’.
NSEVIRI(:)%NamCTstringLabel of the variable contaning satellite zenithal angles. Default value : ‘’.
NSEVIRI(:)%NamCTQstringLabel of the variable containing the clouds types (CT). Default value : ‘’.
NSEVIRI(:)%NamCTPstringLabel of the variable containing quality flags associated to CT. Default value : ‘’.
NSEVIRI(:)%NamCTPQstringLabel of the variable containing top clouds pressures (CTP). Default value : ‘’.
NSEVIRI(:)%LPrintbooleanPrint

A sample NetCDF namelist entry for SEVIRI data

&NETCDF
+  NSEVIRI(57)%Sensor=29,
+  NSEVIRI(57)%NcmlName='ncml_version',
+  NSEVIRI(57)%NwcSafName='nwc_saf_algorith_version',
+  NSEVIRI(57)%NamLat='lat',
+  NSEVIRI(57)%NamLon='lon',
+  NSEVIRI(57)%NamTime='time',
+  NSEVIRI(57)%NamSatAzimuth='sat_azi_ang',
+  NSEVIRI(57)%NamSatZenith='sat_zen_ang',
+  NSEVIRI(57)%NamSolAzimuth='sol_azi_ang',
+  NSEVIRI(57)%NamSolZenith='sol_zen_ang',
+  NSEVIRI(57)%NamCT='CT',
+  NSEVIRI(57)%NamCTQ='CT_QUALITY',
+  NSEVIRI(57)%NamCTP='CTP',
+  NSEVIRI(57)%NamCTPQ='CTP_QUALITY',
+  NSEVIRI(57)%SAUT=5,
+  NSEVIRI(57)%NbSupp=12,
+  NSEVIRI(57)%NbChannels= 8,
+  NSEVIRI(57)%Channels(1:8)= 1,2,3,4,5,6,7,8,
+  NSEVIRI(57)%NamChannels(1:8)='IR_039','WV_062','WV_073','IR_087','IR_097','IR_108','IR_120','IR_134',
+/

Model settings (Screening and Minimisation)

  • Thinning:
    • One pixel in every five is selected in Bator.
    • In Screening the thinning distance is defined as 0.65°.
  • Observation error:
    • Set in Bator namelist
    • 1.7x0.9(SIGMAO_COEF)=1.54 for channels 2,3 & 8
    • 1.05x0.9(SIGMAO_COEF)=0.945 for the channels 4,6,7
  • VarBC:
    • AEMET use p0 for all channels with 24 h cycling.
  • Anything else:
    • "Safe" active channels are WV6.2 and WV7.3 (channels 2 and 3) over sea.
    • AEMET only use Infrared channels so in Bator there is a conversion of the channels list. ch 4 -> ch 1

References

Technical stuff:

Further reading and links to reports/presentations:

diff --git a/previews/PR1153/Overview/Binaries/index.html b/previews/PR1153/Overview/Binaries/index.html new file mode 100644 index 0000000000..a3b5a9ff25 --- /dev/null +++ b/previews/PR1153/Overview/Binaries/index.html @@ -0,0 +1,6 @@ + +Binaries · Harmonie wiki
GitHub

HARMONIE binaries

An installation of HARMONIE produces the following binaries:

  • ACADFA1D : Tool to generate initial and boundary data for MUSC
  • ADDPERT : Create initial perturbations
  • ADDSURF : Allows you to mix different files and add different fields
  • ALTO : Also known as PINUTS. Contains several diagnostic tools.
  • BATOR : Generate ODB from observations in various formats
  • bl95.x : Blacklist compiler, help program to generate object files from the blacklist
  • BLEND : Mixes to files
  • BLENDSUR : Mixes to files
  • cluster : Cluster ensemble members
  • CONVERT_ECOCLIMAP_PARAM : Generate binary files from ECOCLIMAP ascii files
  • dcagen : ODB handling tool
  • domain_prop : Helper program to return various model domain properties
  • FESTAT : Background error covariance calculations.
  • fldextr : Extracts data for verification from model history files. Reads FA from HARMONIE and GRIB from ECMWF/HIRLAM.
  • gl : Converts/interpolates between different file formats and projections. Used for boundary interpolation.
  • IOASSIGN/ioassign : ODB IO setup
  • LSMIX : Scale dependent mixing of two model states.
  • jbconv : Interpolates/extrapolates background error statistics files. For technical experimentation
  • lfitools : FA/LFI file manipulation tool
  • MASTERODB : The main binary for the forecast model, surface assimilation, climate generation, 3DVAR, fullpos and much more.
  • MTEN : Computation of moist tendencies
  • obsextr : Extract data for verification from BUFR files.
  • obsmon : Extract data for observation monitoring
  • odb98.x : ODB manipulation program
  • OFFLINE : The SURFEX offline model. Also called SURFEX
  • oulan : Converts observations in BUFR to OBSOUL format used by BATOR
  • PERTCMA : Perturbation of observations in ODB
  • PERTSFC : Surface perturbation scheme
  • PGD : Generates physiography files for SURFEX.
  • PREGPSSOL : Processing of GNSS data
  • PREP : Generate SURFEX initial files. Interpolates/translates between two SURFEX domains.
  • SFXTOOLS : Converts SURFEX output between FA and LFI format.
  • shuffle : Manipulation of ODB. Also called ODBTOOLS
  • ShuffleBufr : Split bufr data according to observation type, used in the observation preprocessing.
  • SODA : Surfex offline data assimilation
  • SPG : Stochastic pattern generator, https://github.com/gayfulin/SPG
  • SURFEX : The SURFEX offline model. Also called OFFLINE
  • tot_energy : Calculates the total energy of a model state. Is used for boundary perturbation scaling.
  • xtool : Compares two FA/LFI/GRIB files.
diff --git a/previews/PR1153/Overview/Content/index.html b/previews/PR1153/Overview/Content/index.html new file mode 100644 index 0000000000..8da45d40cb --- /dev/null +++ b/previews/PR1153/Overview/Content/index.html @@ -0,0 +1,6 @@ + +Content · Harmonie wiki
GitHub

Harmonie Content

Overview

Harmonie is HIRLAM's adaptation of the LAM version of the IFS/ARPEGE project. The common code shared with the ALADIN program, Meteo France and ECMWF only contains the source code. Harmonie adds the build environment, scripts, support for a scheduler, and a number of diagnostics tools for file conversion and postprocessing. In summary a git clone of harmonie from github contains the following main directories

  • config-sh : Configuration and job submission files for different platforms.
  • const : A selected number of constant files for bias correction, assimilation and different internal schemes. A large number of data for climate generation and the RTTOV software is kept outside of the repository. See [wiki:HarmonieSystemDocumentation#Downloaddata].
  • ecf : Directory for the main configuration file config_exp.h and the containers for the scheduler ECFLOW.
  • suites Scripts and suit definition files for ECFLOW, the scheduler for HARMONIE.
  • nam : Namelists for different configurations.
  • scr : Scripts to run the different tasks.
  • src : The IFS/ARPEGE source code.
  • util : A number of utilities and support libraries.

util

The util directory contains the following main directories

  • auxlibs : Contains gribex, bufr, rgb and some dummy routines
  • binutils : https://www.gnu.org/software/binutils/
  • checknorms : Script for code norm checking
  • gl_grib_api : Boundary file generator and file converter
  • makeup : HIRLAM style compilation tool
  • musc : MUSC scripts
  • obsmon : Code to produce obsmon sqlite files
  • offline : SURFEX offline code
  • oulan : Converts conventional BUFR data to OBSOUL format read by bator.
  • RadarDAbyFA : Field alignment code
diff --git a/previews/PR1153/Overview/FileFormats/index.html b/previews/PR1153/Overview/FileFormats/index.html new file mode 100644 index 0000000000..9ba0763643 --- /dev/null +++ b/previews/PR1153/Overview/FileFormats/index.html @@ -0,0 +1,6 @@ + +File Formats · Harmonie wiki
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File formats in HARMONIE

Introduction

The HARMONIE system reads and writes a number of different formats.

FA files

Default internal format input/output for HARMONIE for gridpoint, spectral and SURFEX data. GRIB is used as a way to pack data, but the grib record cannot be used as such.

  • The header contains information about model domain, projection, spectral truncation, extension zone, boundary zone, vertical levels.
  • Only one date/time per file.
  • FA routines are found under ifsaux/fa
  • List or convert a file with gl
  • Other listing tool PINUTS

Read more

GRIB/GRIB2

All FA files may be converted to GRIB after the forecast run. For the conversion between FA names and GRIB parameters check this table.

  • List or convert a GRIB file with gl

NETCDF

In climate mode all FA files may converted to NETCDF after the forecast run. For the conversion between FA names and NETCDF parameters check util/gl/inc/nc_tab.h.

  • For the manipulation and listing of NETCDF files we refer to standard NETCDF tools.
  • NETCDF is also used as output data from some SURFEX tools.

BUFR and ODB

BUFR is the archiving/exchange format for observations. Observation Database is used for efficient handling of observations on IFS. ODB used for both input data and feedback information.

Read more about observations in HARMONIE here.

DDH (LFA files )

Diagnostics by Horizontal Domains allows you to accumulate fluxes from different packages over different areas/points.

  • LFA files ( Autodocumented File Software )
  • gmapdoc
  • under util/ddh

Misc

  • vfld/vobs files in a simple ASCII format used by the verification.
  • Obsmon files are stored in sqlite format.
diff --git a/previews/PR1153/Overview/Source/index.html b/previews/PR1153/Overview/Source/index.html new file mode 100644 index 0000000000..05d6d83661 --- /dev/null +++ b/previews/PR1153/Overview/Source/index.html @@ -0,0 +1,6 @@ + +Source · Harmonie wiki
GitHub

Harmonie Source Code

Introduction

This wiki page summaries the ARPEGE/IFS source code made available in the HARMONIE system. It is based on documents made available by YESSAD K. (METEO-FRANCE/CNRM/GMAP/ALGO). The relevant document for cycle 40 is available here (or directly here).

HARMONIE Source Library Structure

The main source of HARMONIE system originates from IFS/ARPEGE and it consists of a number of "project" sources. These are:

  • aeolus: Aeolous source code, a package for pre-processing satellite lidar wind data. Inactive for us.
  • aladin: specific routines only relevant to LAM, (limited area models, in particular ALADIN and AROME).
  • algor: application routines, e.g. to read LFI or Arpege files,interface routines for distributed memory environment, some linear algebra routines, such as lanczos algorithm, minimizers.
  • arpifs: global model routines (ARPEGE, IFS), and routines common to global and LAM models. This is the core of the ARPEGE/IFS software. The core of ARPEGE/IFS software.
  • biper: Biperiodization routines for the LAM
  • blacklist: package for blacklisting
  • coupling: lateral coupling and spectral nudging for LAM models
  • etrans: spectral transforms for plane geometry, used for LAM
  • ifsaux: some application routines, for example reading or writing on “LFI” or ARPEGE files, interface routines for distributed memory environment
  • mpa: upper air meso-NH/AROME physics (also used in ARPEGE/ALADIN)
  • mse: surface processes in meso-NH/AROME (interface for SURFEX)
  • odb: ODB (Observational Data Base software), needed by ARPEGE/ALADIN for their analysis or their assimilation cycle
  • satrad: satellite data handling package, needed to run the model analysis/assimilation
  • surf: ECMWF surface scheme
  • surfex: surface processes in meso-NH/AROME - the externalized surface scheme SURFEX
  • trans: spectral transforms for spherical geometry, used for ARPEGE/IFS
  • utilities: utility packages, for operational FA to GRIB (PROGRID), OULAN, BATOR, or programs to operate on ODB and radiances bias correction

Dependencies and hierarchy between each project

Note: these project names are no longer valid – need to update

  • ARP+TFL+XRD+XLA+MPA+MSE+SURFEX: for ARPEGE forecasts with METEO-FRANCE physics.
  • ARP+ALD+TFL+TAL+XRD+XLA+BIP+MPA+MSE+SURFEX: for ALADIN or AROME forecasts.
  • ARP+TFL+XRD+XLA+SUR: for IFS forecasts with ECMWF physics.
  • ARP+TFL+XRD+XLA+MPA+MSE+SURFEX+BLA+ODB+SAT+AEO: for ARPEGE assimilations with METEO-FRANCE physics.
  • ARP+ALD+TFL+TAL+XRD+XLA+BIP+MPA+MSE+SURFEX+BLA+ODB+SAT+AEO: for ALADIN or AROME assimilations.
  • ARP+TFL+XRD+XLA+SUR+BLA+ODB+SAT+OBT+SCR+AEO: for IFS assimilations with ECMWF physics.

Libraries under each project

Note: this information made need to be updated for CY40

ARPIFS

  • adiab
    • Adiabatic dynamics
    • Adiabatic diagnostics and intermediate quantities calculation, for example the geopotential height (routines GP... or GNH...).
    • Eulerian advections
    • Semi-Lagrangian advection and interpolators (routines LA...)
    • Semi-implicit scheme and linear terms calculation (routines SI..., SP..SI..)
    • Horizontal diffusion (routines SP..HOR..)
  • ald inc
    • function: functions used only in ALADIN
    • namelist: namelists read by ALADIN.
  • c9xx: specific configurations 901 to 999 routines (mainly configuration 923). Routines INCLI.. are used in configuration 923. Routines INTER... are interpolators used in configurations 923, 931, 932.
  • canari: routines used in the CANARI optimal interpolation. Their names generally starts by CA.
  • canari common: empty directory to be deleted.
  • climate: some specific ARPEGE-CLIMAT routines.
  • common: often contains includes
  • control: control routines. Contains in particular STEPO and CNT... routines.
  • dfi: routines used in the DFI (digital filter initialisation) algorithm
  • dia: diagnostics other than FULL-POS. One finds some setup SU... routines specific to some diagnostics and some WR... routines doing file writing.
  • function: functions (in includes). The qa....h functions are used in CANARI, the fc....h functions are used in a large panel of topics.
  • interface: not automatic interfaces (currently empty).
  • kalman: Kalman filter.
  • module: all the types of module (variables declarations, type definition, active code).
  • mwave: micro-wave observations (SSM/I) treatment.* namelist: all namelists.
  • nmi: routines used in the NMI (normal mode initialisation) algorithm.
  • obs error: treatment of the observation errors in the assimilation.
  • obs preproc: observation pre-processing (some of them are called in the screening).
  • ocean: oceanic coupling, for climatic applications.
  • onedvar: 1D-VAR assimilation scheme used at ECMWF.
  • parallel: parallel environment, communications between processors.
  • parameter: empty directory to be deleted.
  • phys dmn: physics parameterizations used at METEO-FRANCE, and HIRLAM physics, ALARO physics.
  • phys ec: ECMWF physics. Some of these routines (FMR radiation scheme, Lopez convection scheme) are now also used in the METEO-FRANCE physics.
  • pointer: empty directory to be deleted.
  • pp obs: several applications
    • observation horizontal and vertical interpolator.
    • FULL-POS.
    • vertical interpolator common to FULL-POS and the observation interpolator; some of these routines may be used elsewhere.
  • setup: setup routines not linked with a very specific domain. More specific setup routines are spread among some other subdirectories.
  • sinvect: singular vectors calculation (configuration 601).
  • support: empty directory to be deleted.
  • transform: hat routines for spectral transforms.
  • utility: miscellaneous utilitaries, linear algebra routines, array deallocation routines.
  • var: routines involved in the 3DVAR and 4DVAR assimilation, some minimizers (N1CG1, CONGRAD), some specific 3DVAR and 4DVAR setup routines.
  • wave: empty directory to be deleted.

ALADIN

  • adiab: adiabatic dynamics.
  • blending: blending scheme (currently only contains the procedure blend.ksh).
  • c9xx: specific configurations E901 to E999 routines (mainly configuration E923). Routines EINCLI.. are used in configuration E923. Routines EINTER... are interpolators used in configurations E923, E931, E932.
  • control: control routines.
  • coupling: lateral coupling by external lateral boundary conditions.
  • dia: diagnostics other than FULL-POS.
  • inidata: setup routines specific to file reading (initial conditions, LBC).
  • module: active code modules only used in ALADIN.
  • obs preproc: observation pre-processing (some of them are called in the screening).
  • parallel: parallel environment, communications between processors.
  • pp obs: several applications:
    • observation horizontal and vertical interpolator.
    • FULL-POS.
    • vertical interpolator common to FULL-POS and the observation interpolator; some of these routines may be used elsewhere.
  • programs: probably designed to contain procedures, but currently contains among others some blending routines, the place of which would be probably better in subdirectory "blending".
  • setup: setup routines not linked with a very specific domain. More specific setup routines are spread among some other subdirectories.
  • sinvect: singular vectors calculation (configuration E601).
  • transform: hat routines for spectral transforms.
  • utility: miscellaneous utilitaries, array deallocation routines.
  • var: routines involved in the 3DVAR and 4DVAR assimilation, some specific 3DVAR and 4DVAR setup routines.

TFL

  • build: contains procedures.
  • external: routines which can be called from another project.
  • interface: not automatically generated interfaces which match with the "external" directory routines.
  • module: all the types of module (variables declarations, type definition, active code).
    • tpm ...F90: variable declaration + type definition modules.
    • lt.... mod.F90: active code modules for Legendre transforms.
    • ft.... mod.F90: active code modules for Fourier transforms.
    • tr.... mod.F90: active code modules for transpositions.
    • su.... mod.F90: active code modules for setup.
  • programs: specific entries which can be used for TFL code validation. These routines are not called elsewhere.

TAL

  • external: routines which can be called from another project.
  • interface: not automatically generated interfaces which match with the "external" directory routines.
  • module: all the types of module (variables declarations, type definition, active code).
    • tpmald ...F90: variable declaration + type definition modules.
    • elt.... mod.F90: active code modules for N-S Fourier transforms.
    • eft.... mod.F90: active code modules for E-W Fourier transforms.
    • sue.... mod.F90: active code modules for setup.
  • programs: specific entries which can be used for TAL code validation. These routines are not called elsewhere.

XRD

  • arpege: empty directory to be deleted.
  • bufr io: BUFR format files reading and writing.
  • cma: CMA format files reading and writing.
  • ddh: DDH diagnostics.
  • fa: ARPEGE (FA) files reading and writing.
  • grib io: ECMWF GRIB format files reading and writing.
  • grib mf: METEO-FRANCE GRIB format files reading and writing.
  • ioassign: empty directory to be deleted.
  • lanczos: linear algebra routines for Lanczos algorithm.
  • lfi: LFI format files reading and writing.
  • minim: linear algebra routines for minimizations. Contains the M1QN3 (quasi-Newton) minimizer.
  • misc: miscellaneous decks.* module: all the types of module (variables declarations, type definition, active code). There are a lot of mpl...F90 modules for parallel environment (interface to MPI parallel environment).
  • mrfstools: empty directory to be deleted.
  • newbufrio: empty directory to be deleted.
  • newcmaio: empty directory to be deleted.
  • not used: miscellaneous decks (unused decks to be deleted?).
  • pcma: empty directory to be deleted.
  • support: miscellaneous routines. Some of them do Fourier transforms, some others do linear algebra.
  • svipc: contains only svipc.c .
  • utilities: miscellaneous utilitaries.

SUR

  • build: contains procedures.
  • external: routines which can be called from another project.* function: specific functions.
  • interface: not automatically generated interfaces which match with the "external" directory routines.
  • module: all the types of module (variables declarations, type definition, active code).
    • yos ...F90: variable declaration + type definition modules.
    • su.... mod.F90 but not surf.... mod.F90: active code modules for setup.
    • surf.... mod.F90, v.... mod.F90: other active code modules.
  • offline: specific entries which can be used for SUR code validation. These routines are not called elsewhere.

BLA

  • compiler.
  • include: not automatically generated interfaces, functions, and some other includes.
  • library: the only containing .F90 decks.
  • old2new.
  • scripts.

SAT

  • bias.
  • emiss.
  • interface.
  • module.
  • mwave.
  • onedvar.
  • pre screen.
  • rtlimb.
  • rttov.
  • satim.
  • test. (Not described in detail; more information has to be provided by someone who knows the content of this project, but there is currently no specific documentation about this topic)

UTI

  • add cloud fields: program to add 4 cloud variables (liquid water, ice, rainfall, snow) in ARPEGE files.
  • bator: BATOR software (reads observations data in a ASCII format file named OBSOUL and the blacklist, writes them on a ODB format file with some additional information).
  • combi: combination of perturbations in an ensemble forecast (PEARP).
  • controdb: control of the number of observations.
  • extrtovs: unbias TOVS.
  • fcq: does quality control and writes this quality control in ODB files.
  • gobptout: PROGRIB? (convert ARPEGE files contained post-processed data into GRIB files).
  • include: all .h decks (functions, COMMON blocks, parameters).
  • mandalay: software MANDALAY.
  • module: all types of modules.
  • namelist: namelists specific to the applications stored in UTI (for example OULAN, BATOR).
  • oulan: OULAN software (the step just before BATOR: observation extractions in the BDM, samples data in space and time, and writes the sampled data in an ASCII file called "OBSOUL").
  • pregpssol: Surface GPS processing.
  • prescat: Scatterometer data processing.
  • progrid: PROGRID? (convert ARPEGE files contained post-processed data into GRIB files).
  • progrid cadre: cf. progrid?
  • sst nesdis: program to read the SST on the BDAP. This project has its own entries.

MPA

It contains first layer of directory

  • chem: chemistry.
  • conv: convection.
  • micro: microphysics.
  • turb: turbulence.

Each directory contains the following subdirectories

  • externals: routines which can be called from another project.
  • include: all the "include" decks (functions, COMMON blocks, parameters).
  • interface: not automatically generated interfaces which match with the "external" directory routines.
  • internals: other non-module routines; they cannot be called from another project.
  • module: all types of modules.

SURFEX

  • ASSIM: Surface assimilation routines (please note that programs soda.F90, oi_main.F90 and varassim.F90 are located under mse/programs).
  • OFFLIN: Surface offline routines (please note that programs pgd.F90, prep.F90 and offline.F90 are located under mse/programs).
  • SURFEX: Surface routines for physiography (PGD), initialisation (PREP) and physical processes including e.g. land (ISBA), sea, town (TEB) and lakes.
  • TOPD: TOPMODEL (TOPography based MODEL) for soil hydrology.
  • TRIP: River routing model TRIP

MSE

  • dummy: empty versions of some routines.
  • externals: routines which can be called from another project.
  • interface: not automatically generated interfaces which match with the "external" directory routines.
  • internals: other non-module routines; they cannot be called from another project.
  • module: all types of modules.
  • new: file conversion routines, e.g. fa2lfi, lfi2fa
  • programs: SURFEX programs

References and documentation

diff --git a/previews/PR1153/Overview/da_graph/index.html b/previews/PR1153/Overview/da_graph/index.html new file mode 100644 index 0000000000..e2f9abe5f7 --- /dev/null +++ b/previews/PR1153/Overview/da_graph/index.html @@ -0,0 +1,6 @@ + +Graphical Overview · Harmonie wiki
GitHub
diff --git a/previews/PR1153/PostProcessing/Diagnostics/index.html b/previews/PR1153/PostProcessing/Diagnostics/index.html new file mode 100644 index 0000000000..34fee95bb1 --- /dev/null +++ b/previews/PR1153/PostProcessing/Diagnostics/index.html @@ -0,0 +1,14 @@ + +Diagnostics · Harmonie wiki
GitHub

Diagnostics

Xtool

xtool

DDH

Diagnostics par Domaines Horizontaux (Diagnostics by Horizontal Domains) is a tool to create budgets of different processes in the model. Please read on in the gmap documentation

EZDIAG

From Lisa: Note, this is for printing out full 3D fields from the model physics to the FA-file.

  1. In the routine that you would like to print out your fields add args:

    & PDIAG, KNDIAG,&

    and declare them

    INTEGER(KIND=JPIM),INTENT(IN) :: KNDIAG
+REAL(KIND=JPRB)   ,INTENT(OUT)   :: PDIAG(KLON,KLEV,KNDIAG)

    Put values in the array if its dimension allows it, e.g.

    IF (KNDIAG.GE.1) THEN
+   PDIAG(KIDIA:KFDIA,KTDIA:KLEV,1)= YOURVAL(KIDIA:KFDIA,KTDIA:KLEV)
+ENDIF

    or anything you wish. Note that the variable YOURVAL is now stored in NGFL_EZDIAG=1.

You can store this way up to 25 diagnostic 3D fields in the historic files.

If you want to store 2D fields, you can put them at different levels in the same 3D array.

  1. Remake the interfaces if running AROME (not needed if running ALARO), before recompiling.

  2. In the NAMGFL namelist:

    ! ADDITIONAL FIELDS FOR DIAGNOSTIC
+   NGFL_EZDIAG=1,          ! <=25
+   YEZDIAG_NL(1)%CNAME='YOURVAL',
+  YEZDIAG_NL(1)%LADV=.F.,

    If you add more fields (e.g. you set NGFL_EZDIAG=4), I think you will also need to set the grib parameter, e.g. (the default is 999, that you can leave for the first one).

    YEZDIAG_NL(2)%IGRBCODE=998,
+YEZDIAG_NL(3)%IGRBCODE=997,
+YEZDIAG_NL(4)%IGRBCODE=996,

    Note that the two first places are already defined in harmonie_namelist.pm.

  3. In order to have your variable converted from FA to grib, add the new variable in util/gl/inc/trans_tab.h

diff --git a/previews/PR1153/PostProcessing/FileConversions/index.html b/previews/PR1153/PostProcessing/FileConversions/index.html new file mode 100644 index 0000000000..5705800224 --- /dev/null +++ b/previews/PR1153/PostProcessing/FileConversions/index.html @@ -0,0 +1,29 @@ + +FileConversions · Harmonie wiki
GitHub

File conversions - this page under construction

FA –> GRIB

The default HARMONIE output is in FA format. HIRLAM/HARMONIE users are more used to dealing with data encoded according to GRIB, a WMO code for the representation of gridded data. Users have the option to convert HARMONIE FA format files to GRIB1 (short for GRIB edition 1), GRIB2 (short for GRIB edition 2) or NETCDF. Note that the NETCDF conversion is still experimental. References about different WMO GRIB editions (1, 2 and 3) can be found here.

ecf/config_exp.h

The option to convert model output can be selected in the ecf/config_exp.h experiment configuration file:


+# **** GRIB ****
+CONVERTFA=yes                    # Conversion of FA file to grib/nc (yes|no)
+ARCHIVE_FORMAT=GRIB1|2           # Format of archive files (GRIB1|GRIB2|nc). Currently nc format is only available in climate mode

Details

From the perspective of harmonie suite, the conversion FA to GRIB is carried out in the following tasks:

  • ecf/Makegrib_an.ecf - for fields produced in the analysis. This task is part of the /Expe/Date/Hour/Cycle/PostAnalysis family.
  • ecf/Listen2file.ecf - for fields produced in the forecast. This task is part of the /Expe/Date/Hour/Cycle/Forecast family, possibly through a set of intermediate families Process-i (depending on the values of variables MULTITASK and MAKEGRIB_LISTENERS as set in the ecf/config_exp.h experiment configuration file).

If ARCHIVE_FORMAT is set to GRIB1 or GRIB2, the scr/Makegrib bash script will be run from the tasks mentioned above (possibly through intermediate scripts). Finally, from the scr/Makegrib script the gl tool will be called to convert HARMONIE output from FA to GRIB. Notice that if a more verbose job output is needed, e.g. for debugging, variable PRINTLEV can be set, at the beginning of Makegrib, to something else than 0.

Conversion of FA/lfi files to GRIB by gl:

    gl [-c] [-p] FILE [ -o OUTPUT_FILE] [ -n NAMELIST_FILE]
+
+    gl -c FA/LFI-FILE -- converts the full field (including extension zone)
+    gl -p FAFILE      -- excludes the extension zone ( "p" as in physical domain only)

By default, Makegrib removes the biperiodic zone from FA files and creates GRIB files. HARMONIE data is produced on a Lambert projection. GRIB data can be interpolated onto different projections using gl. Further information is available in the gl documentation.

Forecast output is converted from FA to GRIB in scr/Makegrib using the following command:

  $MPPGL $BINDIR/gl -p $1 -o $2 -n namelist_makegrib${MG} || exit

where

  • $1 is the input HARMONIE FA-file (ICSMH${HARM}+${ffff}, $HARM is the 4-char experiment identifier, $ffff is the forecast step)
  • $2 is the output HARMONIE GRIB file (fc${DATE}${HH}+${FFF}grib)
  • namelist_makegrib${MG} is 
    &naminterp
+ outkey%yy=$YY,
+ outkey%mm=$MM,
+ outkey%dd=$DD,
+ outkey%hh=$HH,
+ outkey%mn=00,
+ outkey%ff=$FF,
+ time_unit=$time_unit
+ pppkey(1:3)%ppp =   1, 61,184
+ pppkey(1:3)%ttt = 103,105,105,
+ pppkey(1:3)%lll =   0,  0,  0,
+ pppkey(1:3)%tri =   0,  4,  4,
+ skipsurfex = .TRUE.,
+ fstart(15) = $fstart,
+ fstart(16) = $fstart,
+ fstart(162) = $fstart,
+ fstart(163) = $fstart,
+/
    In the namelist:
    • $YY/$MM/$DD/$HH is the forecast initial time
    • $time_unit is the units of time to be used min/h
    • pppkey: selection of requested post-processed products (See: Postprocessing with gl for more details)
    • $fstart is the start hour for time-range products such as maximum temperature.

WMO GRIB editions and references

Currently (Aug 2019) there are several editions of GRIB in use or in experimental phase.

  • GRIB edition 2 is currently the main GRIB edition.
  • GRIB edition 1 is nowadays considered a legacy code. However it is still used, not only for legacy gridded data, but also to encode currently generated data.
  • There is an experimental WMO GRIB edition 3.
diff --git a/previews/PR1153/PostProcessing/Fullpos/index.html b/previews/PR1153/PostProcessing/Fullpos/index.html new file mode 100644 index 0000000000..29adf73e15 --- /dev/null +++ b/previews/PR1153/PostProcessing/Fullpos/index.html @@ -0,0 +1,25 @@ + +FullPos · Harmonie wiki
GitHub

Postprocessing with FULL-POS

Introduction

FULL-POS is a powerful postprocessing package, which is part of the common ARPEGE/IFS cycle. FULL-POS is documented by

  • Yessad (2011): This documentation describes the software FULL-POS doing post-processing on different kind of vertical levels. In particular, post-processable variables and organigramme are given. Some aspects of horizontal and vertical interpolators (which may be used in some other applications) are also described.
  • ykfpos38.pdf: FULL-POS in cycle 38
  • El Khatib (2002): Older documentation with a link to an old FULL-POS website.

FULL-POS is a special configuration (9xx) of the full model for setup and initialization. In other words it is a 0 hour forecast, with extra namelist settings for variables to (post)process and to write out. When generating initial or boundary files we are calling a special configuration of FULL-POS, e927.

ecf/config_exp.h

The use of FULL-POS is controlled by the POSTP variable inecf/config_exp.h:

POSTP="inline"                          # Postprocessing by Fullpos (inline|offline|none).
+                                        # See Setup_postp.pl for selection of fields.
+                                        # inline: this is run inside of the forecast
+                                        # offline: this is run in parallel to the forecast in a separate task

inline is the default which means FULL-POS postprocessing is called from the forecast model as it runs. If you select offline the model is called independently of the running forecast model using the forecast model output files as inputs to be postprocessed. By selecting none no FULL-POS postprocessing will be carried out.

Output frequency by FULL-POS is controlled by PWRITUPTIMES, FPOUTINT and FREQ_RESET:

# Postprocessing times (space separated list)
+PWRITUPTIMES="03 06 09 12 15 18 21 24 30 36 42 48 54 60"
+FPOUTINT="-1"                           # Regular  interval if > 0. Not used if <= 0.
+
+FREQ_RESET=3                            # Reset frequency of max/min values in hours, controls NRAZTS

FULL-POS

The use of FULL-POS is controlled by the following namelists: NAMFPPHY, NAMFPDY2, NAMFPDYP, NAMFPDYH, NAMFPDYI, NAMFPDYV, NAMFPDYT and NAMFPDYS. These namelists can be used to make an accurate list of post- processed fields. It is possible to call FULL-POS when running the model. In such a configuration we can configure HARMONIE to write some parameters with a different frequency than the standard historical files produced.

However, with inline postprocessing, it is possible to get, at each post-processing time step, exactly the fields you wish. In this case, you have to make other namelists file which will contain the selection of the fields you wish to get. First, you have to set in NAMCT0 the variable CNPPATH as the directory where the selection files will be. Under this directory, the name of a selection file must be xxtDDDDHHMM, where DDDDHHMM specifies the date/time of the post-processing time step.

The management of FULL-POS and the creation of selection files is made easier for the user by scr/Select_postp.pl.

Parameter selection

Some of the more relevant entries in this script:

  • CFP2DF: names of the 2D dynamics fields to be post-processed. Names have at maximum 16 characters. By default CFP2DF contains blanks (no 2D dynamical field to post-process).
  • CFP3DF: names of the 3D dynamics fields to be post-processed. Names have at maximum 12 characters. By default CFP3DF contains blanks (no 3D dynamical field to post-process).
  • CFPPHY: names of the physical fields to be post-processed. Names have at maximum 16 characters. By default CFPPHY contains blanks (no physical field to post-process).
  • CFPXFU: names of the instantaneous fluxes fields to be post-processed. Names have at maximum 16 characters. By default CFPXFU contains blanks (no instantaneous fluxes field to post-process).
  • CFPCFU: names of the cumulated fluxes fields to be post-processed. Names have at maximum 16 characters. By default CFPCFU contains blanks (no cumulated fluxes field to post-process).

You can define the levels you wish to output using the following variable:

  • NRFP3S: model levels to postprocess
  • RFP3H: height above ground levels to postprocess
  • RFP3P: pressure levels to postprocess
  • RFP3PV: PV levels to postprocess
  • RFP3I: temperature levels to postprocess

Add new output

This section provides a simple example on how to add a new parameter/vertical level for postprocessing in scr/Select_postp.pl.

To add new "height above ground" output at 150m to the FULL-POS output, two changes are required:

  • Add the new height, 150., to the RFP3H array
  • Add level array number to the @namfpdyh_lev level selection
cd $HOME/hm_home/levexp
+$PATH_TO_HARMONIE/config-sh/Harmonie co scr/Select_postp.pl
+cp scr/Select_postp.pl scr/Select_postp.pl.ori
+### edit scr/Select_postp.pl
+diff scr/Select_postp.pl scr/Select_postp.pl.ori
+83c83
+<  RFP3H => ['20.','50.','100.','150.','250.','500.','750.','1000.','1250.','1500.','2000.','2500.','3000.'],
+---
+>  RFP3H => ['20.','50.','100.','250.','500.','750.','1000.','1250.','1500.','2000.','2500.','3000.'],
+132c132
+<  @namfpdyh_lev = (1,2,3,4,5,6,7,8,9,10,11,12,13) ;
+---
+>  @namfpdyh_lev = (1,2,3,4,5,6,7,8,9,10,11,12) ;

Expert users

In the FULL-POS namelist NAMFPC (variables explained in src/arp/module/yomfpc.F90), the variables are placed into different categories:

  • LFPCAPEX: if true XFU fields used for CAPE and CIN computation (with NFPCAPE).
  • LFPMOIS: month allowed for climatology usage:
    • .F. => month of the model (forecast).
    • .T. => month of the file.
  • NFPCLI: usage level for climatology:
    • 0: no climatology
    • 1: orography and land-sea mask of output only
    • 2: all available climatological fields of the current month
    • 3: shifting mean from the climatological fields of the current month to the ones of the closest month
  • NFPCAPE: kind of computation for CAPE and CIN:
    • 1 => from bottom model layer
    • 2 => from the most unstable layer
    • 3 => from mto standard height (2 meters) as recomputed values
    • 4 => from mto standard height (2 meters) out of fluxes (for analysis)
  • CFPFMT: format of the output files, can take the following values:
    • ’MODEL’ for output in spherical harmonics.
    • ’GAUSS’ for output in grid-point space on Gaussian grid (covering the global sphere).
    • ’LELAM’ for output on a grid of kind ALADIN (spectral or grid-point coefficients).
    • ’LALON’ for a grid of kind "latitudes * longitudes".
    Default is ’GAUSS’ in ARPEGE/IFS, ’LELAM’ in ALADIN.
  • CFPDOM: names of the subdomains. Names have at maximum 7 characters.
    • If CFPFMT=’GAUSS’ or ’LELAM’ only one output domain is allowed.
    • If CFPFMT=’LALON’ the maximum of output subdomains allowed is 10.
    By default, one output domain is requested, CFPDOM(1)=’000’ and CFPDOM(i)=’’ for i>1.
  • L_READ_MODEL_DATE: if: .TRUE. read date from the model

The default FA-names for parameters in different categories can be found from src/arp/setup/suafn1.F90 L687.

It's worth mentioning some of the variables postprocessed by FULL-POS

  • True vertical velocity w [VW]. (for NH ALADIN only).
  • Potential vorticity P V [PV].
  • Pressure coordinate vertical velocity ω [VV].
  • Eta coordinate vertical velocity η [ETAD].
  • Absolute vorticity ζ + f [ABS].
  • Relative vorticity ζ [VOR].
  • Divergence D [DIV].
  • Satellite equivalents
    • MSAT7 MVIRI channels 1 and 2 ([MSAT7C1] and [MSAT7C2]).
    • MSAT8 MVIRI channels 1 to 8 ([MSAT8C1] to [MSAT8C8]).
    • MSAT9 MVIRI channels 1 to 8 ([MSAT9C1] to [MSAT9C8]).
    • GOES11 IMAGER channels 1 to 4 ([GOES11C1] to [GOES11C4]).
    • GOES12 IMAGER channels 1 to 4 ([GOES12C1] to [GOES12C4]).
    • MTSAT1 IMAGER channels 1 to 4 ([MTSAT1C1] to [MTSAT1C4]).

Problems

Problems may be encountered with FULL-POS when running on large domains. Here are some things to look out for:

  • Increase the MBX_SIZE if you run out of MPI buffer space.
  • Increase number of cores if you run out of memory.
  • Make sure NFPROMA and NFPROMA_DEP are small and equal to NPROMA.
  • Set NSTRIN=NSTROUT=NPROC in nampar0 if one of the above mentioned doesn't help.
diff --git a/previews/PR1153/PostProcessing/Interpolation/index.html b/previews/PR1153/PostProcessing/Interpolation/index.html new file mode 100644 index 0000000000..2f42ca1e40 --- /dev/null +++ b/previews/PR1153/PostProcessing/Interpolation/index.html @@ -0,0 +1,6 @@ + +Interpolation GL · Harmonie wiki
GitHub

Interpolations with gl

Introduction

In the following we describe the geometrical routines in gl. gl can handle the following projections

  • lat/lon
  • Rotated lat/lon
  • Lambert
  • Polar stereographic
  • Rotated Mercator

Interpolation

All interpolations are handled within the module util/gl/mod/module_interpol.f90. The module contains

  • clear_interpol to clear the interpolation setup
  • setup_interpol where the position of the output gridpoints in the input grid are calculated
  • setup_weights where we calculate the interpolation weights. Interpolation can be nearest gridpoint or bilinear. The interpolation can be masked with a field that tells which gridpoints from the input fields that can be used.

The setup routines are only called once.

  • interpolate runs the interpolation
  • resample works like the interpolation if the input grid is coarser than the output grid. If reversed it takes the averages of the input gridpoints belonging to each output gridpoit.

Interpolation can be done between different projections as wall as to geographical points. The most general example on the usage of the interpolatin can be found in util/gl/grb/any2any.F90.

For practical usage see the section about postprocessing

Rotations

All rotations are handled within the module util/gl/mod/module_rotations.f90. The module contains

  • clear_rotation to clear the rotation setup
  • prepare_rotation prepare rotations from input geometry to output geometry via north south components.
  • rotate_winds runs the actual rotation.

Staggering

The staggering of an input file is based on the knowledge about the model and is in util/gl/mod/module_griblist.f90. The restaggering is done in util/gl/grb/restag.f90 as a simple average between gridpoints. The staggering of the output geomtery is defined by OUTGEO@ARKAWA, where A and C are available options.

diff --git a/previews/PR1153/PostProcessing/gl/index.html b/previews/PR1153/PostProcessing/gl/index.html new file mode 100644 index 0000000000..b92e069cf4 --- /dev/null +++ b/previews/PR1153/PostProcessing/gl/index.html @@ -0,0 +1,236 @@ + +GL · Harmonie wiki
GitHub

Post processing with gl

Introduction

gl ( as in griblist ) is a multi purpose tool for file manipulation and conversion. It uses ECMWF's ecCodes library, and can be compiled with and without support for HARMONIE FA/LFI or NETCDF files. The gl package also includes software for extraction for verification, fldextr, and field comparison, xtool.

 USAGE: gl file [-n namelist_file] [-o output_file] -[lfgmicp(nc)sdtq] [-lbc CONF]
+
+ gl [-f] file, list the content of a file, -f for FA/lfi files  
+ -c    : Convert a FA/lfi file to grib ( -f implicit )          
+ -p    : Convert a FA file to grib output without extension zone
+         (-c and -f implicit )                                  
+ -nc   : Convert a FA/lfi file to NetCDF ( -f implicit )        
+ -musc : Convert a MUSC FA file ASCII ( -c implicit )           
+ -lbc ARG : Convert a CONF file to HARMONIE input               
+            where CONF is ifs or hir as in ECMWF/HIRLAM data    
+         climate_aladin assumed available                       
+ -d    : Together with -lbc it gives a (bogus) NH boundary file   
+         climate_aladin assumed available                       
+ -s    : Work as silent as possible                             
+ -g    : Prints ksec/cadre/lfi info                             
+ -m    : Prints min,mean,max of the fields                      
+ -i    : Prints the namelist options (useless)                  
+ -tp   : Prints the GRIB parameter usage                        
+ -t    : Prints the FA/lfi/GRIB table (useful)                  
+ -wa   : Prints the atmosphere FA/NETCDF/GRIB table in wiki fmt 
+ -ws   : Prints the surfex FA/NETCDF/GRIB table in wiki fmt     
+ -q    : Cross check the FA/lfi/GRIB table (try)                
+ -pl X : Give polster_projlat in degrees                        
+
+ gl file -n namelist_file : interpolates file according to      
+                            namelist_file                       
+ gl -n namelist_file : creates an empty domain according to     
+                       specifications in namelist_file          
+ -igd  : Set lignore_duplicates=T                               
+ -igs  : Set lignore_shortname=T. Use indicatorOfParameter      
+             instead of shortName for selection                 
+

ecCodes definition tables

Since ecCodes has replaced grib_api as the ECMWF primary software package to handle GRIB, we will hereafter only refer to ecCodes but same similar settings applies for grib_api as well. With the change to ecCodes we heavily rely on the shortName key for identification. To get the correct connection between the shortnames and the GRIB1/GRIB2 identifiers we have defined specific tables for harmonie. These tables can be found in /util/gl/definitions. To use these tables you have to define the ECCODES_DEFINITION_PATH environment variable as 

export ECCODES_DEFINITION_PATH=SOME_PATH/gl/definitions:PATH_TO_YOUR_ECCODES_INSTALLATION

If this is not set correctly the interpretation of the fields may be wrong.

GRIB/FA/LFI file listing

Listing of GRIB/ASIMOF/FA/LFI files.

 gl [-l] [-f] [-m] [-g] FILE

where FILE is in GRIB/ASIMOF/FA/LFI format

OptionDescription
-linput format is LFI
-finput format is FA
-l and -f are equivalent
-gprint GRIB/FA/LFI header
-mprint min/mean/max values

GRIB/FA/LFI file conversion

Output to GRIB1

gl [-c] [-p] FILE [ -o OUTPUT_FILE] [ -n NAMELIST_FILE]

where

-cconverts the full field (including extension zone) from FA to GRIB1
-pconverts field excluding the extension zone ("p" as in physical domain) from FA to GRIB1

The FA/LFI to GRIB mapping is done in a table defined by a util/gl/inc/trans_tab.h

To view the table:

gl -t
+gl -tp

To check for duplicates in the table:

gl -q

The translation from FA/LFI to GRIB1 can be changed through a namelist like this one:

  &naminterp
+    user_trans%full_name ='CLSTEMPERATURE',
+    user_trans%t2v       = 253,
+    user_trans%pid       = 123,
+    user_trans%levtype   = 'heigthAboveGround',
+    user_trans%level     = 002,
+    user_trans%tri       = 000,
+  /

or for the case where the level number is included in the FA name

  &naminterp
+    user_trans%full_name='SNNNEZDIAG01',
+    user_trans%cpar='S'
+    user_trans%ctyp='EZDIAG01',
+    ...
+  /

Conversion can be refined to convert a selection of fields. Below is and example that will write out

  • T (shortname='t',pid=011), u (shortname='u',pid=033) andv (shortname='v',pid=034) on all (level=-1) model levels (levtype='hybrid')
  • T (shortname='t',pid=011) at 2m (lll=2) above the ground (levtype='heightAboveGround') [T2m]
  • Total precipitation (shortname='tp',pid=061,levtype='heightAboveGround',level=000)
  &naminterp
+   readkey%shortname=   't',     'u',     'v',                't',               'tp',               'fg',
+   readkey%levtype='hybrid','hybrid','hybrid','heightAboveGround','heightAboveGround','heightAboveGround',
+   readkey%level=        -1,      -1,      -1,                  2,                  0,                 10,
+   readkey%tri =          0,       0,       0,                  0,                  4,                  2,
+  /

where

  • shortname is the ecCodes shortname of the parameter
  • levtype is the ecCodes level type
  • level is the GRIB level
  • tri means timeRangeIndicator and is set to distinguish between instantaneous, accumulated and min/max values.

The first three ones are well known to most users. The time range indicator is used in HARMONIE to distinguish between instantaneous and accumulated fields. Read more about the options here Note that for levtype hybrid setting level=-1 means all.

We can also pick variables using their FA/lfi name:

  &naminterp
+    readkey%faname = 'SPECSURFGEOP','SNNNTEMPERATURE',
+  /

Where SNNNTEMPERATURE means that we picks all levels.

Fields can be excluded from the conversion by name

  &naminterp
+    exclkey%faname = 'SNNNTEMPERATURE'
+  /

Output to GRIB2

To get GRIB2 files the format has to be set in the namelist as 

  &naminterp
+    output_format = 'GRIB2'
+  /

The conversion from FA to GRIB2 is done in gl via the ecCodes tables. All translations are defined in util/gl/scr/harmonie_grib1_2_grib2.pm where we find all settings required to specify a parameter in GRIB1 and GRIB2.


+  tmax => {
+   editionNumber=> '2',
+   comment=> 'Maximum temperature',
+   discipline=> '0',
+   indicatorOfParameter=> '15',
+   paramId=> '253015',
+   parameterCategory=> '0',
+   parameterNumber=> '0',
+   shortName=> 'tmax',
+   table2Version=> '253',
+   typeOfStatisticalProcessing=> '2',
+   units=> 'K',
+  },
+

To create ecCodes tables from this file run

   cd gl/scr
+   ./gen_tables.pl harmonie_grib1_2_grib2

and copy the grib1/grib2 directories to gl/definitions.

Note that there are no GRIB2 transations yet defined for the SURFEX fields!

Output to NetCDF

gl -nc [-p] FILE [ -o OUTPUT_FILE] [ -n NAMELIST_FILE]

where

-pconverts field excluding the extension zone ("p" as in physical domain) from FA to NetCDF
-ooutput file name
-nnamelist file to be used in conversion

The FA/LFI to NetCDF mapping is done using tables defined by util/gl/inc/trans_tab.h and util/gl/inc/nc_tab.h

Namelist options for NetCDF

The translation from FA/LFI to NetCDF can be changed through a namelist like this one:

  &naminterp
+    user_nctrans%full_name ='SFX.SIC',
+    user_nctrans%s_name    = ""       
+    user_nctrans%l_name    = "Sea-Ice Area Percentage (Atmospheric Grid)",
+    user_nctrans%unit      = "%"                 ,
+  /

The unit entry can be used to do a limited set of unit conversions, in the example above SIC will be converted from the original units (fraction) to a percentage.

Other specific naminterp options for converting to netcdf:

variabledescriptiondefault
lacc2fluxT: Convert accumulated fields (tri=4) to fluxes by dividing by the length of the interval FF-F0. Names, units and tri are adapted..FALSE.
lmergelevsT: write all levels of a variable to the same file; F: each level in a separate file.FALSE.
lclimate_fieldsT: don't add a time dimension and variable, useful for climate fields like land mask.FALSE.
lverticesT: add vertices (corner points) to netcdf file, only possible for newly created files.FALSE.
lhistoryT: add history global attribute to netcdf file.FALSE.
ikindncNetCDF version (34), 3: larger files, but faster; 4: compressed, but slow
ref_dateReference date, used to generate relative time axis19500101
ref_hourReference hour, used to generate relative time axis0
ctimeistime refers to "start", "middle", or "end" of interval for non-instantaneous fields. If writing several variables to 1 file, that don't have the same timing (e.g. accumulated vs. instantaneous), then "end" is probably the only safe option!end
csepseparator in derived netcdf file name_
cdatefnameformat for date in derived netcdf file name, if not recognized as format, use whatever is passedYYYYMMDDHH
cfidenused in derived netcdf file name to indicate origin (e.g. his, sfx, fp)
cfreqused in derived netcdf file name and as "frequency" global attribute (e.g. 1hr, 3hr, day, mon)
chm_revHARMONIE version, used as "model_id" global attribute
cdomaindomain name, used in derived netcdf file name and as "domain" global attribute
cexperimentexperiment id, used in derived netcdf file name and as "experiment_id" global attribute
cinstituteused as "institute_id" global attribute
chostmodused as "drivingmodelid" global attribute
Setting fstart for min-max fields

Min and max fields, with tri=2 (time range indicator) are valid for a certain period. By default the period is 3h, but this can be changed via variables FREQ_RESET_TEMP and FREQ_RESET_GUST in ecf/config_exp.h, for example to 1 to store min/max temperature over an hour. By default gl doesn’t have info on this frequency and it is assumed they are valid since the start of the run. Use the namelist option fstart to assign the appropriate starting value, e.g.:

fstart(15) = 3

for max t2m (parameter code 15). The fstart value is then used in the time_bnds. This value needs to be updated with FREQ_RESET. In Makegrib_gribex and convertFA there are examples of how to do this. Note that this works in the same way for NetCDF and GRIB.

Derived file name

If no output file name is supplied (-o flag) an output file name is derived from available info:

nc_fld_name[_levinfo][_cfiden][_cdomain][_cexperiment][_cfreq][_timeinfo].nc

with: | | | | –- | –- | | ncfldname | name of netcdf variable as defined in nctab.h | | levinfo | indication of level info, with *lev if all levels are written to the same file (lsplitlev), or a level number/height otherwise | | cfiden | identifier of input file (e.g. his, sfx), set via namelist | | cdomain | domain name, set via namelist | | cexperiment | experiment name, set via namelist | | cfreq | frequency, set via namelist | | timeinfo | indicator of file date/time, format controlled via cdatefname namelist variable, not used if lclimatefields |

If elements are not set, either via the namelist or by a default value, they are excluded from the name. The separator is a _ by default but can be changed via the csep namelist variable.

Time axis

A relative time axis (days since …) is created using the refdate and refhour as reference. In existing files the current time step is looked up, and if it already exists it is overwritten. If it doesn’t exist yet, it is appended to the end of the file. Note that if time steps are not converted in order the time axis will not be consecutive. For non-instantaneous fields a time bounds variable is added. The start of the interval is taken from fstart (from tri=2) or outkey%F0, or just from the input file (usually 0). The end of the interval is the current time step. Whether the time variables refers to the beginning, middle or end of the interval can be controlled with the ctimeis namelist variable. If instantaneous and non-instantaneous files are written to the same file, it is best to use ctimeis=end. Start may also work, but this should be tested first. With the namelist variable cdatefname you can write output from multiple cycles to the same file. For example by setting it to YYYYMM the derived file name will contain year and month info, but not day and hour, so all cycles from a month are written to the same file. Be careful with the first time step of a cycle when using cdatefname as gl will overwrite the last time step of the previous cycle with those of the first step of the new cycle. You can decide to skip the first time step, or multiple steps, if cycles overlap more than 1 step.

Multilevel fields and fields on heights or pressure levels

All levels of multilevel fields can be written to one file (lmergelevs=.TRUE.) or to separate files (default). This is possible for model levels, pressure levels and height levels.

All levels in one file

If all levels are written to the same file and additional dimension is needed: lev for model levels, height for height levels. For model level fields, named SNNN, the number of levels is derived from the input file (glistnlev). For height level fields, HNNNNN, currently the heights must be set via the hlevlist namelist variable. The heights in this list are used to expand the HNNNNN (to H00010, H00250 etc) and are also used as coordinate variable. For pressure levels PNNNNN is used in the same way.

Single level fields on height

For single level fields on a specific height such as 2m temperature and 10m wind a height variable is added with that height. This is done if level type = 105 and level ≠ 0. This may not be appropriate in all cases. Note that for some fields level is abused (e.g. level 760 for the sea tile), which gives useless height. The same approach is used when outputting multilevel fields with lsplitlev=.TRUE. (default).

Don’t mix fields

There is a check that all fields on height levels in one file have the same height specification, because only 1 height variable can be specified at the moment. So t2m and w10m cannot be in the same file. Not sure if the check is foolproof. It may be possible to define multiple heights in the code, e.g. height, height2 etc., but this has not been implemented yet.

NetCDF 3 or NetCDF 4

With the ikindnc namelist options the netcdf format can be set. NetCDF 4 files are compressed in gl, however, this makes the conversion much slower. At the moment it seems better to let gl use the NetCDF 3 format and then convert them to NetCDF 4 after creation of the file has finished. This can be done with the following command:

nccopy -k 4 -d 1 -s $nc3_file $nc4_file

where:

-ddeflate level
-sshuffling (can improve compression, speed and size)

In scr/convertFA this can be done by setting nc3to4=yes (default). At the end of the script the files are then converted from netcdf3 to netcdf4-classic with compression.

Direction of fluxes

A new element positive was added to the nctrans derived type in moduletypez, and in nctab.h positive, can be empty, 'd' or 'u'. If it is not empty a positive attribute is added to the variable in the NetCDF file. If it has value 'u', the values of the variable are multiplied by −1 to change the direction from towards the surface to away from the surface.

Fill value

By default no missing value is added for atmospheric fields. For SURFEX fields either 999 (version ≤ 4) or 1+e20 (version ≥ 5) is used. It is possible to add a missing value via the namelist. To do so, in the namelist set variable lcheck_misval to .TRUE. and set rmisval to the correct value.

Adding new netcdf variables

If you get messages like:

No NETCDF conversion for ....

then you need to add the field to util/gl/inc/nc_tab.h, which contains the translation from FA to netcdf names. The file util/gl/inc/trans_tab.h contains the conversion to FA names to GRIB codes. If the field you would like to is absent there, it is probably best to add it in that file as well, as for example GRIB level types are used for functionality in the netcdf conversion as well. Remember to recompile.

postprocessing

gl can be used to produce postprocessed parameters possibly not available directly from the model.

  • Postprocessed parameters are defined in util/gl/grb/postprocess.f90 and util/gl/grb/postp_pressure_level.f90. Some more popular parameters are listed:
    • Pseudo satellite pictures
    • Total precipitation and snow
    • Wind (gust) speed and direction
    • Cloud base, cloud top, cloud mask and significant cloud top

For a comprehensive list please check the output information for each cycle. NOTE that all parameters may not be implemented in gl

  • To produce "postprocessed" MSLP and accumulated total precipitation and visibility use the following namelist, nam_FApp:

    &naminterp
+ pppkey(1:3)%shortname='pres','tp','vis',
+ pppkey(1:3)%levtype='heightAboveSea','heightAboveGround','heightAboveGround'
+ pppkey(1:3)%level=  0, 0, 0,
+ pppkey(1:3)%tri=  0, 4, 0,
+ lwrite_pponly= .TRUE.,
+/
    gl -p ICMSHHARM+0003 -o output_pp.grib -n nam_FApp
    • Note:
      • Set lwrite_pponly as true to only write the postprocessed fields to file
      • Set lwrite_pponly as false write all fields will be written to the file, input fields as well as the postprocessed fields.

Vertical interpolation

gl can be used to carry out vertical interpolation of parameters. Four types are available

  • HeightAboveSea, give height above sea in meters

  • HeightAboveGround, give height above ground in meters

  • HeightAboveGroundHighPrecision, give height above ground in centimeters

  • isobaricInHpa, give height above sea in hPa

  • To interpolation temperature to 1.40m (level 140 in cm) use the following namelist, nam_hl:

    &naminterp
+ pppkey(1:1)%shortname='t',
+ pppkey(1:1)%levtype='heightAboveGroundHighPrecision',
+ pppkey(1:1)%level=  140,
+ pppkey(1:1)%tri=  0,
+ vint_z_order=1,
+ lwrite_pponly= .TRUE.,
+/
    gl -p ICMSHHARM+0003 -o output_hl.grib -n nam_hl
    • Note:
      • Vertical interpolation to z levels is controlled by VINTZORDER: 0 is nearest level, 1 is linear interpolation

  • To height interpolation (Levls 500, 850 and 925 in hPa, type=100) use the following namelist, nam_pl:

    &naminterp
+ pppkey(1:3)%shortname='t','t','t',
+ pppkey(1:3)%levtype='isobaricInhPa','isobaricInhPa','isobaricInhPa',
+ pppkey(1:3)%level=  500, 850, 925,
+ pppkey(1:3)%tri=  0, 0, 0,
+ vint_z_order=1,
+ lwrite_pponly= .TRUE.,
+/
    gl -p ICMSHHARM+0003 -o output_pl.grib -n nam_pl

Horizontal interpolation

  • Interpolation/resampling between different geometries such as regular lat lon, Lambert conformal, Polar steregraphic, rotated lat lon and rotated Mercator is possible with gl

  • The interpolation methods available are:

    • nearest grid-point (order=-2)
    • most representative grid-point (order=-1)
    • nearest grid-point (order=0)
    • bi-linear (order=1)
    • bi-quadratic (order=2, mask not respected)
    • bi-cubic (order=3, mask not respected)

  • Example of (an Irish) rotated lat lon domain, nam_FArotll:

    &naminterp
+ outgeo%nlon=50,
+ outgeo%nlat=50,
+ outgeo%nlev=-1,
+ outgeo%gridtype='rotated_ll',
+ outgeo%west=-2.5,
+ outgeo%south=-2.5,
+ outgeo%dlon=0.1,
+ outgeo%dlat=0.1,
+ outgeo%polon=-6.7,
+ outgeo%polat=-36.2,
+ order= 1,
+/

where DLON/DLAT are in degrees.The HIRLAM Domain Tool may be of use for viewing rotated lat lon domains.

gl -p ICMSHHARM+0003 -n nam_FArotll  -o output.grib

  • Example of a lambert domain

    &naminterp
+  outgeo%nlon       =  50 ,
+  outgeo%nlat       =  50,
+  outgeo%nlev       =  -1,
+  outgeo%gridtype   =  'lambert',
+  outgeo%west       =  15.0
+  outgeo%south      =  50.0
+  outgeo%dlon       = 10000.
+  outgeo%dlat       = 10000.
+  outgeo%projlat    =  60.
+  outgeo%projlat2   =  60.
+  outgeo%projlon    =  15.
+/

    where DLON/DLAT are in meters.The HIRLAM Domain Tool may be of use for viewing rotated lat lon domains.

  • Example polar stereographic projection

    &naminterp
+  outgeo%nlon       =  50 ,
+  outgeo%nlat       =  50,
+  outgeo%nlev       =  -1,
+  outgeo%gridtype   =  'polar_stereographic',
+  outgeo%west       =  15.0
+  outgeo%south      =  50.0
+  outgeo%dlon       = 10000.
+  outgeo%dlat       = 10000.
+  outgeo%projlat    =  60.
+  outgeo%projlon    =  15.
+/

    where DLON/DLAT are in meters.Note: the GRIB1 standard assumes that the projection plane is at 60 degrees north whereas HARMONIE assumes it is at 90 degrees north.

  • Example rotated Mercator

    &naminterp
+  outgeo%nlon       =  50 ,
+  outgeo%nlat       =  50,
+  outgeo%nlev       =  -1,
+  outgeo%projection =  11,
+  outgeo%west       =  15.0
+  outgeo%south      =  50.0
+  outgeo%dlon       = 10000.
+  outgeo%dlat       = 10000.
+  outgeo%projlat    =  60.
+  outgeo%projlon    =  15.
+/

    where DLON/DLAT are in metersNote: rotated Mercator is not supported in GRIB1.

  • Geographical points is a special case of projection 0 use namelist file, nam_FAgp:

    &naminterp
+  outgeo%nlon=3 ,
+  outgeo%nlat=1,
+  outgeo%nlev=-1,
+  outgeo%gridtype='regular_ll',
+  outgeo%arakawa=  'a',
+  order             =   0,
+  readkey(1:3)%shortname='t','u','v',
+  readkey(1:3)%levtype='heightAboveGround','heightAboveGround','heightAboveGround',
+  readkey(1:3)%level=   2,  10, 10,
+  readkey(1:3)%tri=  0, 0, 0,
+  linterp_field     = f,
+  gplat          = 57.375,57.35,57.60
+  gplon          = 13.55,13.55,14.63
+/

    The result will be written to a ASCII file with the name gpYYYYMMDDHHLLL.

    gl -p ICMSHHARM+0003 -n nam_FAgp 
+cat gp20140702_1200+003

Extract (crop) a sub-domain

gl can be used to "cut out" a sub-domain from an input file using the namelist namCUT:

Crop using lower left and upper right coordinates

&naminterp
+istart = 150
+jstart = 150
+istop = 350
+jstop = 350
+/

Use this command:

gl input.grib -n namCut -o cutout.grib

Another way of specifying your sub domain is to define how many points to exclude in the end

&naminterp
+istart = 150
+jstart = 150
+istop = -10
+jstop = -10
+/

Crop using SW,NE corner and/or number of points

Here, you specify any of the SouthWest, NorthEast corners and/or the number of gridpoints

&naminterp
+outgeo%gridtype = 'crop',
+outgeo%nlat  = 200,
+outgeo%nlon  = 300,
+outgeo%south =  50.155,
+outgeo%west  = -12.88,
+/

Or 

&naminterp
+outgeo%gridtype = 'crop',
+outgeo%north =  58.277,
+outgeo%east  =  12.3,
+outgeo%south =  50.155,
+outgeo%west  = -12.88,
+/

If you specify outgeo%gridtype as 'crop', the SouthWest corner will be translated to lower left grid coordinates and Nlat,Nlon will translate to upper right coordinates. You may specify any of SW, NE, nlat/nlon. Priority is given to SW, NE. The behaviour is as follows:

SW and NE have priority, these will anchor either corner. If a corner is not specified, Nlat/Nlon will extend from the other corner.

If only one coordinate is specified, the other corner becomes the corner of the input domain. So:

  1. Specify only SW and you get a crop from there to the NE corner of the input domain.

  1. Specify only NE and you get a crop from the SW corner of the input domain.

  2. Specify SW and NE and you get a crop between these corners

  1. Specify SW and Nlat/Nlon and you get Nlat x Nlon from SW corner.
  1. Specify NE and Nlat/Nlon and you get Nlat x Nlon south and west of NE corner.
  1. Specify SW, NE and Nlat/Nlon and you get a crop between SW/NE corners. Nlat/Nlon are ignored.
  1. Specify only Nlat/Nlon and you get Nlat x Nlon from SW corner of the input domain.

The crop must be within the original domain unless you set

ldemand_inside = .FALSE.

in the namelist. In this case, the crop will be adjusted to lie within the original domain and the output will be smaller than Nlat x Nlon. In the case where the requested crop lies entirely outside the original domain, the program will abort.

Rotating wind components

HARMONIE produces u and v wind components relative to the model grid. gl by default always outputs u and v relative to the output grid. So if no regridding is done and the output is still on the LCC grid, u and v will also still be relative to the LCC grid. But if the output is regridded to a regular lat-lon grid, then u and v will be rotated and will be relative to the regular lat-lon grid. Wind (from) direction (parameter 31), however, is always relative to a regular lat-lon grid. To rotate u and v to regular lat-lon, while retaining the data on the LCC grid set uvrelativetogrid=0 in the namelist. All u and v vectors that will be processed will be rotated to geographical E and N directions.

Output to several files

It is possible to let gl read data once and do processing loops with these data. Let us look at an example namelist

&naminterp
+ OUTPUT_FORMAT='MEMORY'
+/
+&naminterp
+ INPUT_FORMAT='MEMORY'
+ OUTPUT_FORMAT='GRIB'
+ OUTFILE='test1.grib'
+/
+&naminterp
+ INPUT_FORMAT='MEMORY'
+ OUTPUT_FORMAT='GRIB'
+ OUTFILE='test2.grib'
+ READKEY%FANAME='SNNNTEMPERATURE'
+/
+&naminterp
+ INPUT_FORMAT='MEMORY'
+ OUTPUT_FORMAT='GRIB'
+ READKEY%FANAME='CLSTEMPERATURE'
+ outgeo%nlon       =  50 ,
+ outgeo%nlat       =  50,
+ outgeo%nlev       =  -1,
+ outgeo%gridtype   =  'polar_stereographic',
+ outgeo%west       =  15.0
+ outgeo%south      =  50.0
+ outgeo%dlon       = 10000.
+ outgeo%dlat       = 10000.
+ outgeo%projlat    =  60.
+ outgeo%projlon    =  15.
+ OUTFILE='test3.grib'
+/

In the first loop we read data and store it in memory. In the second look we read the data from memory and output to the file test1.grib. Then we make two more loops where we in the first one only output a subset and in the last one also do an interpolation to a new grid. The data in memory is however still untouched.

Input from several files

It's also possible to read several files and write them into one. This is used to gather the various FA fields written from the IO-server. A typical namelist would look like

&naminterp
+ maxfl=28,
+ output_format='MEMORY',
+ output_type = 'APPEND',
+ input_format='FA',
+ infile='forecast/io_serv.000001.d/ICMSHHARM+0003.gridall',
+/
+&naminterp
+ output_format='MEMORY',
+ output_type = 'APPEND',
+ input_format='FA',
+ infile='forecast/io_serv.000002.d/ICMSHHARM+0003.gridall',
+/
+...
+&naminterp
+ input_format = 'MEMORY',
+ output_format= 'GRIB'
+ output_type  = 'NEW',
+ outfile      = 'test.grib'
+/

Where maxfl tells how many files that will be read.

domain_prop

domain_prop is used do extract various properties from a file. 

Climate:  $MPPGL $BINDIR/domain_prop -DOMAIN_CHECK $LCLIMDIR/m$M1 -f || \

Check an existing domain with a namelist specification

domain_prop -DOMAIN_CHECK -f CLIMATE_FILE

The geometry is read from fort.10 and the program aborts if the new and old geometries differs. See scr/Climate for an example.

Check if Q is in gridpoint or spectral representation

domain_prop -f -QCHECK FAFILE

returns 1 if Q is spectral and 0 if Q is in gridpoint space.

Check if a specific field is present

domain_prop -f -CHECK_FIELD S001CLOUD_FRACTI

returns 1 if S001CLOUD_FRACTI is found, 0 otherwise

Check the number of levels in a file

domain_prop -f -NLEV FAFILE

Check the geographical extension of the domain

domain_prop -f -MAX_EXT FAFILE

This is used in several places to determine the domain to be extracted from MARS or limit the observations sample. Another way is to provide the projection parameters of your domain as input

domain_prop -MAX_EXTR \
+-NLON $NLON -NLAT $NLAT \
+-LATC $LATC -LONC $LONC \
+-LAT0 $LAT0 -LON0 $LON0 \
+-GSIZE $GSIZE

To get the geographical position of the lower left corner use

domain_prop -f -LOW_LEFT FAFILE

To print out the important projection parameters in a file use:

domain_prop -f -4JB FAFILE

Get time information from a file

domain_prop -f -DATE FAFILE

fldextr and obsextr

Read about the verification extraction programs here

diff --git a/previews/PR1153/PostProcessing/xtool/index.html b/previews/PR1153/PostProcessing/xtool/index.html new file mode 100644 index 0000000000..4ff00bc31e --- /dev/null +++ b/previews/PR1153/PostProcessing/xtool/index.html @@ -0,0 +1,70 @@ + +xtool · Harmonie wiki
GitHub

xtool

Xtool, part of the gl package, provides a utility to calculate differences between GRIB/FA files and produce the result in a new GRIB/NetCDF file. See xtool part of util/gl/README. The main commands are:

 
+                          xtool                                 
+ 
+ Simple usage:                                                  
+  xtool -f1 FILE1 [ -fN FILEN] -op OPERATOR [ -o OFILE]       
+  i.e. apply OPERATOR on FILEN and output to OFILE              
+  operator is one of SUM/DIFF/AVE/STDV/RMS/MS                      
+  1 file : SUM/AVE/SQR                                          
+  2 files: SUM/AVE/PROD/DIFF/RMSE/STDV/SAL                      
+  3 files: DIFF/SAL                                             
+ 
+ Accumulated usage:                                             
+  xtool -sdtg1 YYYYMMDDHH -edtg1 YYYYMMDDHH -ll1 LLL -ll2 LLL \ 
+        -p1 PATH1 -p2 PATH2 -fcint HH -op OPERATOR              
+  i.e. accumulate OPERATOR on FILE1 and FILE2 during the period 
+  sdtg1 to edtg1 with step of fcint.                            
+  sdtg2/edtg2=sdtg1/edtg2 - (LL1-LL2) unless given              
+ 
+ Time information in the path should be given as                
+  -p1 /data/test/fc@YYYY@@MM@@DD@@HH@+@LLL@ or something like   
+  -p2 /data/@YYYY@/@MM@/@DD@/@HH@/fc@YYYY@@MM@@DD@_@HH@+@LLL@   
+ 
+ Different parameters can be compared by using the xkey         
+ variable in the namelist                                       
+ 
+ Flag summary :                                                 
+  -h                : Print this help                           
+  -fN FILE          : Single file name                          
+  -pN PATH          : Path name                                 
+  -sdtgN YYYYMMDDHH : Start date/time                           
+  -edtgN YYYYMMDDHH : End date/time                             
+  -llN LLL          : Forecast length to use                    
+  -fcint HH         : Forecast cycle interval in hours          
+  -iN               : format of the input file GRIB/FA          
+  -s                : Run silent                                
+  -of               : Output format GRIB/FA/NETCDF/SCREEN       
+  -g                : Prints ksec/cadre/lfi info                
+  -p                : Use FA file without extension zone        
+  -f                : Global FA switch                          
+  -a FILE           : Accumulation file to be read              
+  -n namelist       : Use namelist to set additional options    
+  -igd              : Set lignore_duplicates=F                  
+  -r VALUE          : Rescale the output with a constant VALUE  
+

DIFF

One of the things xtool is useful for is to check if the result from two different experiments differ. This is done by applying the DIFF operator and writing the output to the screen like

 xtool [-f] -f1 FILE1 -f2 FILE2 -of SCREEN

The is heavily used in the Harmonie testbed to check the difference between versions of the system.

Below is a simple example of how to use xtool. You may also check scr/Fldver to find examples.

What is the difference between +24h and +48h MSLP forecasts during August 2008?

  1. Namelist for xtool, which lists the parameters (here mean sea level pressure) to be examined:

    &NAMINTERP
+  PPPKEY%ppp = 001,
+  PPPKEY%lll = 000,
+  PPPKEY%ttt = 103,
+/

  2. Run xtool.

    xtool -sdtg1 2008080100 -edtg1 2008083000 -ll1 48 \
+      -sdtg2 2008073100 -edtg2 2008082900 -ll2 24 \
+      -p1 /your_model_data/YYYY/MM/HH/fcYYYYMMDD_HH+LLL \
+      -p2 /your_model_data/YYYY/MM/HH/fcYYYYMMDD_HH+LLL \
+      -fcint 6 -op DIFF -n your_namelist \
+      -o output.grb
    • -sdtg1, -edtg1, -ll1: The cycles to look for the +48h forecast.
    • -sdtg2, -edtg2, -ll2: The cycles to look for the +24h forecast.
    • -p1, -p2: Naming rules for the files in cycle 1 and 2, respectively.
    • -fcint: Interval between forecast cycles.
    • -op: Operation to be applied. Possible choices DIFF, SUM, AVE, STDV or SAL
    • -n: Namelist file.
    • -o: Name of the output grib file.

  3. Output file (output.grb) now contains one 2D-field with accumulated 48-24h difference of mean sea level pressure.

Deaccumulate with xtool, setting outkey%startstep

Accumulated fields, with tri=4, such as precipitation and radiation fields, are accumulated from the start of a cycle. Often it is more interesting to know for example the hourly amount. This can be also be done with xtool DIFF, using the steps below, assuming regular 1h output intervals:

  1. The first output file (+0h) does not contain accumulated fields, so skip that one
  2. The second file contains the amount between 0 and 1, so no need to subtract, simple convert with gl
  3. For all consecutive steps use xtool, e.g.:
    xtool -f -f1 $infile -f2 $infile_prev -op DIFF -of NETCDF -n $def_nam -igd

This subtracts the fields in $infile_prev from those in $infile. The namelist file should contain at least the names of the accumulated fields to use and the outkey parameters:

&naminterp
+readkey%name = "YOUR_ACCUM_FIELD",
+outkey%date = $YMD
+outkey%time = ${HH}00
+outkey%startstep = $FF
+outkey%endstep = $FF_prev
+/

where $YMD and $HH are the start of your cycle, $FF is the step of $infile and $FF_prev of the previous file. For example to calculate the amount of rain between hour 7 and 8 of a forecast started at 2017030300 use:

xtool -f -f1 ICMSHHARM+0008 -f2 ICMSHHARM+0007 -op DIFF -of NETCDF -n $def_nam -igd

def_nam contains:

&naminterp
+readkey%name = "SURFACCPLUIE",
+outkey%date = 20170303
+outkey%time = 0000
+outkey%endstep = 8
+outkey%startstep = 7
+/

This is used scr/convertFA to deaccumulate fields to NetCDF for climate simulations.

SAL

Structure Amplitude Location (SAL) is object based quality measure for the verification of QPFs (Wernli et al., 2008). SAL contains three independent components that focus on Structure, Amplitude and Location of the precipitation field in a specified domain.

  • S: Measure of structure of the precipitation area (-2 - +2). Large S, if model predicts too large precipitation areas.

  • A: Measure of strength of the precipitation (-2 - +2). Large A, if model predicts too intense precipitation.

  • L: Measure of location of the precipitation object (0 - +2). Large L, if modelled precipitation objects are far from the observed conterparts.

  • SAL can be activated in xtool by using -op SAL option. e.g.

     xtool -f1 model.grib -f2 observation.grib -op SAL -n namelist

  • Output of the SAL are 2 simple ascii-files:

    1. scatter_plot.dat containing date, S,A and L parameters.
    2. sal_output.dat containing more detailed statistics collected during the verification (location of center of mass, number of objects, measure of object size etc.).
diff --git a/previews/PR1153/SuiteManagement/ECFLOW/index.html b/previews/PR1153/SuiteManagement/ECFLOW/index.html new file mode 100644 index 0000000000..04fe04eea6 --- /dev/null +++ b/previews/PR1153/SuiteManagement/ECFLOW/index.html @@ -0,0 +1,21 @@ + +ECFLOW · Harmonie wiki
GitHub

Running Harmonie under ecFlow

Introduction

This document describes how to run Harmonie under ecFlow scheduler at ECMWF. ecFlow is the ECMWF workflow manager and it has been written using python to improve maintainability, allow easier modification and introduce object orientated features as compared to the old scheduler SMS. ecFlow can be used in any HARMONIE version in and above harmonie-40h1.1.beta.1.

New users

On the ECMWF Atos machine in Bologna, each user has a virtual machine on which ecFlow is running. If you don't have a VM yet, ask ECMWF to set it up for you. If you are starting ecFlow for the first time at ECMWF, you may have to add your ssh key to the authorized_keys file to allow passwordless access, as ssh is used to communicate between the servers:

      cat ~/.ssh/id_rsa.pub >> ~/.ssh/authorized_keys

Start your experiment supervised by ecFlow

Launch the experiment in the usual manner by giving start time, DTG, end time, DTGEND and other optional arguments

      ~hlam/Harmonie start DTG=YYYYMMDDHH

If successful, ecFlow will identify your experiment name and start building your binaries and run your forecast. If not, you need to examine the ecFlow log file $HM_DATA/ECF.log. $HM_DATA is defined in your Env_system file. At ECMWF $HM_DATA=$SCRATCH/hm_home/$EXP where $EXP is your experiment name.

The ecFlow viewer starts automatically. To view any suite for your server or other servers, the server must be added to the ecFlow viewer (via Servers -> Manage servers, Add server) and selected in Servers. See below on how to find the port and server name.

  • More than one experiment is not allowed with the same name monitored in the same server so Harmonie will start the server and delete previous non-active suite for you.
  • For deleting a suite manually using ecflow_client --port XXXX --host XXXX --delete force yes /suite or using the GUI: right-click on the suite, then click "Remove" (if you don't see the Remove option, go to Tools -> Preferences -> Menus, and make yourself Administrator)
  • If other manual intervention in server or client is needed you can use ecflow commands. See here.

ecFlow control

Finding the port and host of the ecFlow server

The server on which ecFlow is running is defined with variable $ECF_HOST, the port with ECF_PORT, set in Env_system or derived. On the VMs on ECMWF Atos machine in Bologna ECF_HOST=ecflow-gen-${USER}-001 and ECF_PORT=3141 for all users.

NOTE: New naming convention of the ecflow servers has been implemented by ECMWF. The old server name still will be available for some users. If the new naming is used for your user you need to update in Env_system ECF_HOST=ecfg-${USER}-1 and ECF_PORT=3141.

Information about server variables can be found by running:

  • On ECMWF's Atos:
      ssh ecflow-gen-${USER}-001 ecflow_server status
  • Or if ecFlow is running on the machine you are logged into:
      ecflow_server status

You can also find ECF_PORT/ECF_HOST by checking the files under $ECF_HOME, like:

> ls -rlt ~/ecflow_server
+total 12
+-rw-r--r-- 1 hlam accord 2529 Jun 15 16:20 ecflow-gen-hlam-001.3141.ecf.check.b
+-rw-r--r-- 1 hlam accord 2529 Jun 20 17:36 ecflow-gen-hlam-001.3141.ecf.check
+-rw-r--r-- 1 hlam accord 3113 Jun 20 17:38 ecflow-gen-hlam-001.log

Check the status of your server

To check the status of your server you can use

ecflow_client --stats  --port ECF_PORT  --host ECF_HOST

or

ecflow_client --port ECF_PORT  --host ECF_HOST  --ping

or go to the "Info" tab in the ecFlow viewer.

Open the viewer of a running ecFlow server

If you know that your ecFlow server is running but you have no viewer attached to it you can restart the viewer:

ecflow_ui &

Stop your ecFlow server

If you are sure you're running the server on the login node of your machine you can simply run

ecflow_stop.sh

A more complete and robust way is

export ECF_PORT=<your port>
+export ECF_HOST=<your server name>
+ecflow_client  --halt=yes
+ecflow_client  --check_pt
+ecflow_client  --terminate=yes

Restart your ecFlow server

The ecFlow servers on the virtual machines a ECMWF should be restarted automatically. If it doesn't, you may need to restart it with:

ssh ecflow-gen-${USER}-001 sudo systemctl restart ecflow-server

On other systems, if the server is not running you can start again using the script:

 ecflow_start.sh [-d $ECF_HOME]

If ecFlow is running on a different machine you have to login and start it on that machine:

 ssh <your server name>
+ module load ecflow
+ ecflow_start.sh [-d $ECF_HOME]

As an alternative you can let Harmonie start the server for you when starting your next experiment, or type

~hlam/Harmonie mon

Keep your ecFlow server alive

If not using ecFlow at the ECMWF's VMs, the ecFlow server will eventually die causing an unexpected disruption in you experiments. To prevent this you can add a cron job restarting the server e.g. every fifth minute.

> crontab -l
+*/5 * * * * /home/$USER/bin/cronrun.sh ecflow_start.sh -d $ECF_HOME > ~/ecflow_start.out 2>&1

where tthe small script cronrun.sh makes sure you get the right environment

#!/bin/bash
+source ~/.bash_profile
+module unload ecflow
+module load ecflow/5.7.0
+$@

The ecFlow server version may change over time.

Add another user to your ecFlow viewer

Sometimes it's handy to be able to follow, and control, your colleagues experiments. To be able to do this do the following steps:

  • Find the port number of your colleague as described above.
  • In the ecFlow viewer choose Servers -> Manage servers, click on "Add server" and fill in the appropriate host and port and give it a useful name. Click on OK to save it.
  • If you click on Servers in the viewer the name should appear and you can make it visible by clicking on it.

Changing the port

By default, the port is set by 

export ECF_PORT=$((1500+usernumber))

in mSMS.job (40h1.1), Start_ecFlow.sh (up to #b6d58dd), or Main (currently).

For the VMs at ECMWF it is set to 3141 in Env_system. If you want to change this number (for example, if that port is in use already), you will also need to add a -p flag when calling ecflow_start.sh as follows:

ecflow_start.sh -p $ECF_PORT -d $JOBOUTDIR

Otherwise, ecflow_start.sh tries to open the default port.

Note: if you already have an ecFlow server running at your new port number before launching an experiment, this won't be an issue.

More info

diff --git a/previews/PR1153/System/Build_local_docs/index.html b/previews/PR1153/System/Build_local_docs/index.html new file mode 100644 index 0000000000..760c30bf5f --- /dev/null +++ b/previews/PR1153/System/Build_local_docs/index.html @@ -0,0 +1,20 @@ + +Local Documentation · Harmonie wiki
GitHub

Build system documentation locally

This page explains how to build the system documentation locally

Install Julia

Documentation is build using Julia. It is strongly recommended that the official generic binaries from the downloads page be used to install Julia

  1. Download Julia and untar
  2. Add the julia bin directory to your PATH
export PATH=/path/to/julia/bin:$PATH
Note

On Atos you can 

module load julia

but make sure to set JULIA_DEPOT_PATH to a place with sufficient quota. E.g set in .bashrc

export JULIA_DEPOT_PATH=$PERM/juliadepot

Install dependencies

To install the Documenter.jl dependency

julia --project=docs/ -e 'using Pkg; Pkg.instantiate()'

Build documentation

To create the HTML pages from the markdown files run

julia --project=docs/ docs/make.jl 
[ Info: SetupBuildDirectory: setting up build directory.
+[ Info: Doctest: running doctests.
+[ Info: ExpandTemplates: expanding markdown templates.
+[ Info: CrossReferences: building cross-references.
+[ Info: CheckDocument: running document checks.
+[ Info: Populate: populating indices.
+[ Info: RenderDocument: rendering document.
+[ Info: HTMLWriter: rendering HTML pages.
+┌ Info: Deployment criteria for deploying devbranch build from GitHub Actions:
+│ - ✔ ENV["GITHUB_REPOSITORY"]="github.com/Hirlam/HarmonieSystemDocumentation.git" occurs in repo="github.com/Hirlam/HarmonieSystemDocumentation.git"
+│ - ✘ ENV["GITHUB_EVENT_NAME"]="" is "push"
+│ - ✘ ENV["GITHUB_REF"] matches devbranch="pre-CY46h1"
+│ - ✘ ENV["GITHUB_ACTOR"] exists
+│ - ✘ ENV["DOCUMENTER_KEY"] or ENV["GITHUB_TOKEN"]  exists
+└ Deploying: ✘

The HTML pages will be put in docs/build. Open index.html in a browser

firefox docs/build/index.html

A local build will not deploy the HTML pages to github.com/Hirlam/HarmonieSystemDocumentation.git.

Also see .github/workflows/documentation.yml

diff --git a/previews/PR1153/System/DrHook/index.html b/previews/PR1153/System/DrHook/index.html new file mode 100644 index 0000000000..f0a3e5290d --- /dev/null +++ b/previews/PR1153/System/DrHook/index.html @@ -0,0 +1,42 @@ + +DrHook · Harmonie wiki
GitHub

Profiling & traceback tool Dr.Hook

Background

Dr.Hook (& the Medicine Head :-) was developed at ECMWF in 2003 to overcome problems in catching runtime errors. Their IBM system at the time was quite impotent to produce meaningful traceback upon crash. It was decided that something need to be done urgently.

Dr.Hook gets its name from Fujitsu VPP's hook-functionality in their Fortran compiler, which enabled to call user functions upon enter and exit of a routine. Dr.Hook is of course a former US rock-band from 70's, which probably did not survive to this millenium due to heavy drug use!

In about week or so late 2003 the first version of Dr.Hook saw daylight. It turned out nearly immediately that we could try to gather information for profiling purposes, too, like wall & CPU clock times, possibly MFlop/s and memory consumption information.

One drawback with Dr.Hook was that (initially just) Fortran code needed to be instrumented by subroutine calls, which was a bother. However, for IFS code and automatique insertion script was developed greatly simplifiying the task.

Activating Dr.Hook

Two things have to be in place in order to use Dr.Hook:

  1. Fortran (or C) codes must contain explicit Dr.Hook calls to enable instrumentation, starting from the main program
  2. Certain environment variable(s) need to be set

An example of Fortran instrumentation

SUBROUTINE HOP(KDLEN,KDBDY,KSET,KHORIZ)
+!**** *HOP* - Operator routine for all types of observations.
+!     E. ANDERSSON            ECMWF          01/04/99
+...
+USE PARKIND1  ,ONLY : JPIM     ,JPRB
+USE YOMHOOK   ,ONLY : LHOOK,   DR_HOOK
+...
+IMPLICIT NONE
+...
+REAL(KIND=JPRB) :: ZHOOK_HANDLE ! Stack variable i.e. do not use SAVE
+...
+! Before the very first statement
+IF (LHOOK) CALL DR_HOOK('HOP',0,ZHOOK_HANDLE)
+...
+! Before any RETURN-clause
+IF (LLcondition) THEN
+  IF (LHOOK) CALL DR_HOOK('HOP',1,ZHOOK_HANDLE)
+  RETURN
+ENDIF
+...
+! Before the very last statement
+IF (LHOOK) CALL DR_HOOK('HOP',1,ZHOOK_HANDLE)
+END SUBROUTINE HOP
+

Some environment variables

To activate Dr.Hook and to enable tracebacks upon failure:

export DR_HOOK=1

This sets the Fortran-variable LHOOK to .TRUE..

By default all usual Unix-signals are caught (like SIGFPE=8, SIGSEGV=11, etc.). Occasionally, during development, some of them can be turned off, e.g. SIGFPE:

export DR_HOOK_IGNORE_SIGNALS=8

To enable low-overhead wall clock time profiling, set also:

export DR_HOOK_OPT=prof

Also recommended options are:

export DR_HOOK_SHOW_PROCESS_OPTIONS=0
+mkdir -p /some/path/hook
+export DR_HOOK_PROFILE=/some/path/hook/drhook.prof.%d

The former one reduces Dr.Hook informative output upon initialization. This can be messy as so many processors are printing the same, often useless, output to the stderr.

The latter defines the profile files' location. The %d will be replaced with MPL-task id (= MPI-task plus 1).

Sometimes it is necessary to turn Dr.Hook off and also make sure no signals are caught by Dr.Hook – as this the (unfortunate?) default due to function call to C_DRHOOK_INIT_SIGNALS in arp/setup/sumpini.F. Now there is a new environment variable DR_HOOK_INIT_SIGNALS to prevent this. So, to make sure Dr.Hook does not interfere your run at all, give:

export DR_HOOK=0`
+export DR_HOOK_INIT_SIGNALS=0

Timeline memory profiling

It is possible to activate timeline profiling to see jumps in memory usage. Output is written to stdout. Controlling variables are:

export DR_HOOK=1
+export DR_HOOK_TIMELINE=1
+#-- Optional:
+export DR_HOOK_TIMELINE_FREQ=1 # the default = 1000000
+export DR_HOOK_TIMELINE_MB=1 # th default jump 1 MByte

Upon each DR_HOOK_TIMELINE_FREQ-call to DR_HOOK this will check for one MByte (or DR_HOOK_TIMELINE_MB) jumps in resident memory usage, and will print a line containing cumulutive wall clock time since start, resident memory size right now, high water mark so far, routine name (instrumented to Dr.Hook).

Implicit MPL-library (and MPI) initialization

Be aware that the very first call to DR_HOOK also attempts to initialize MPL-library for you. Sometimes this is not desired or causes some hard to understand failures, especially with programs where MPI is not involved, but Dr.Hook calls are present. To turn this initialization off, set

export DR_HOOK_NOT_MPI=1

For example, asyncronous I/O module SAMIO does that – from within its Fortran. It calls before first Dr.Hook call function

CALL C_DRHOOK_NOT_MPI()

Thus, this can be used elsewhere, too (like in util/gl tools):

PROGRAM SOME_UTILGL_TOOL
+...
+CALL C_DRHOOK_NOT_MPI()
+!-- The following now does NOT initialize MPL nor MPI for you
+IF (LHOOK) CALL DR_HOOK('SOME_UTILGL_TOOL',0,ZHOOK_HANDLE)
+...
+IF (LHOOK) CALL DR_HOOK('SOME_UTILGL_TOOL',1,ZHOOK_HANDLE)

Overheads

The DR_HOOK=1 has practically no overhead on a scalar machine. Profiling with DR_HOOK_OPT=prof causes some 5% overhead.

On a vector machine overhead are so big that Dr.Hook should not be used there, unfortunately.

diff --git a/previews/PR1153/System/ECMWF/ECMWF_teleport/index.html b/previews/PR1153/System/ECMWF/ECMWF_teleport/index.html new file mode 100644 index 0000000000..0f08489ea4 --- /dev/null +++ b/previews/PR1153/System/ECMWF/ECMWF_teleport/index.html @@ -0,0 +1,23 @@ + +Teleport · Harmonie wiki
GitHub

Monitoring Harmonie suites with Teleport

In order to monitor the progress of your Harmonie suite(s) at ECMWF the ecFlow GUI ecflow_ui can be used directly from your local PC/server. This relies on teleport and ssh port forwarding which is described in more detail below.

Open Teleport connection

  • This relies on a Teleport connection to ECMWF. Further details on Teleport are available here:
[itops@reaserve ~]$ tsh status
+> Profile URL:  https://jump.ecmwf.int:443
+  Logged in as: itops@met.ie
+  Cluster:      jump.ecmwf.int
+  Roles:        *
+  Logins:       duit
+  Valid until:  2021-03-23 22:00:35 +0000 UTC [valid for 11h21m0s]
+  Extensions:   permit-X11-forwarding, permit-agent-forwarding, permit-port-forwarding, permit-pty
+
+
+* RBAC is only available in Teleport Enterprise
+  https://gravitational.com/teleport/docs/enterprise
+[itops@reaserve ~]$
  • In order to open a new Teleport connection execute the following and submit credential via browser:
[ewhelan@reaserve ~]$ tsh login --proxy=jump.ecmwf.int:433

Log in

To log in to ECMWF's Atos:

[itops@reaserve ~]$ ssh -X hpc-login

The Teleport connection to ECMWF is configured as follows:

[ewhelan@reaserve ~]$ cat .ssh/config 
+Host hpc-login
+  User dui
+  IdentityFile ~/.tsh/keys/jump.ecmwf.int/eoin.whelan@met.ie
+  ProxyCommand bash -c "tsh login; ssh -W %h:%p %r@jump.ecmwf.int"
+[ewhelan@reaserve ~]$

Open ecFlow ports

  • The following opens ports to ECMWF (dui, ECF_PORT=3141) ecFlow server. Based on instructions provided by [https://confluence.ecmwf.int/display/ECFLOW/Teleport+-+using+local+ecflow_ui]. In a new terminal:
ssh hpc-login -C -N -L 3141:ecflow-gen-dui-001:3141
diff --git a/previews/PR1153/System/ECMWF/RunningHarmonieOnAtos/index.html b/previews/PR1153/System/ECMWF/RunningHarmonieOnAtos/index.html new file mode 100644 index 0000000000..084cc08d3a --- /dev/null +++ b/previews/PR1153/System/ECMWF/RunningHarmonieOnAtos/index.html @@ -0,0 +1,21 @@ + +Running on Atos · Harmonie wiki
GitHub

Running Harmonie on Atos

Before you start

New Harmonie users will require membership of the accord user group at ECMWF. Please contact the HIRLAM System Manager, Daniel Santos, to make this request on your behalf. Futhermore ECMWF will have to setup a virtual machine for you to run the ecFlow server on (see here). Finally, make sure that your login shell is set to /bin/bash.

Tip

To share your experiments with the members of the accord group do: 

chmod 755 $HOME $SCRATCH $PERM $HPCPERM
+chgrp -R accord $HOME/hm_home $SCRATCH/hm_home $HOME/HARMONIE $HPCPERM/hm_home
+chmod g+s $HOME/hm_home $SCRATCH/hm_home $HOME/HARMONIE $HPCPERM/hm_home

The chmod g+s sets the SGID bit which will ensure that new experiments created in hm_home will automatically be in the accord group

Configure your experiment (option 1)

  • Create an experiment directory under $HOME/hm_home and use the master script Harmonie to set up a minimum environment for your experiment. 

    mkdir -p $HOME/hm_home/my_exp
+cd $HOME/hm_home/my_exp
+ln -sf /path/to/git/repository/config-sh/Harmonie
+./Harmonie setup -r /path/to/git/repository -h ECMWF.atos

    where

    • -r Specifies the path to the git repository. Make sure you have checkout-ed the correct branch.
    • -h tells which configuration files to use. At ECMWF config.ECMWF.atos is the default one. For harmonie-43h2.2 use -h config.aa
      Tip

      An Atos tagged versions of Harmonie are available in ~hlam/harmonie_release/git/tags/

      ln -sf ~hlam/harmonie_release/git/tags/<taggedversion>/config-sh/Harmonie 
+Harmonie setup -r ~hlam/harmonie_release/git/tags/<taggedversion>  -h ECMWF.atos
  • This would give you the default setup which currently is AROME physics with CANARI+OI_MAIN surface assimilation and 3DVAR upper air assimilations with 3h cycling on a domain covering Denmark using 2.5km horizontal resolution and 65 levels in the vertical.
  • Now you can edit the basic configuration file ecf/config_exp.h to configure your experiment scenarios. Modify specifications for domain, data locations, settings for dynamics, physics, coupling host model etc. Read more about the options here. You can also use some of the predefined configurations by calling Harmonie with the -c option:
    ./Harmonie setup -r PATH_TO_HARMONIE -h YOURHOST -c CONFIG -d DOMAIN
    where CONFIG is one of the setups defined in scr/Harmonie_configurations.pm. If you give -c without an argument or a non existing configuration a list of configurations will be printed.
  • In some cases you might have to edit the general system configuration file config-sh/config.ECMWF.atos. See here for further information.
  • The rules for how to submit jobs on Atos are defined in config-sh/submit.ECMWF.atos. See here for further information
  • If you experiment in data assimilation you might also want to change settings in scr/include.ass.

Configure your experiment using github repo (option 2)

Disadvantage of option 1 for version control in git is that code is located in two places. Instead you can :

  • Make a fork of the Harmonie repository. From now we assume your fork will be located at https://github.com/<user>/Harmonie.
  • Log in to ATOS as usual and perform the following commands:
mkdir -p $PERM/hm_home && cd $PERM/hm_home/
+git clone -b <remote_branch> git@github.com:<user>/Harmonie.git  <exp_name>
+cd <exp_name>
+git checkout -b <feature/branch_name>
+export PERL5LIB=$(pwd)
+config-sh/Harmonie setup -r $(pwd) -h ECMWF.atos

Where the git clone command clones a specific branch into a directory called <exp_name>. git checkout with the -b flag, then creates a new branch for you to work on. Call it something meaningful. Then the experiment is set up as usual, but using your local repository as reference to itself.

Then you do some work and when ready to commit something you do

git add <path to modified file>
+git commit --author "Name <name@host>" -m "Commit message"
+git push --set-upstream origin <feature/branch_name>

Specifying --set-upstream origin <feature/branch_name> to git push is only necessary the first time you push your branch to the remote. When ready you can now go to GitHub and make a pull-request to the Harmonie repository from your fork.

Start your experiment

Launch the experiment by giving start time, DTG, end time, DTGEND

./Harmonie start DTG=YYYYMMDDHH DTGEND=YYYYMMDDHH
+# e.g., ./Harmonie start DTG=2022122400 DTGEND=2022122406

If successful, Harmonie will identify your experiment name and start building your binaries and run your forecast. If not, you need to examine the ECFLOW log file $HM_DATA/ECF.log. $HM_DATA is defined in your Env_system file. At ECMWF $HM_DATA=$SCRATCH/hm_home/$EXP where $EXP is your experiment name. Read more about where things happen further down.

Continue your experiment

If your experiment have successfully completed and you would like to continue for another period you should write

./Harmonie prod DTGEND=YYYYMMDDHH

By using prod you tell the system that you are continuing the experiment and using the first guess from the previous cycle. The start date is take from a file progress.log created in your $HOME/hm_home/my_exp directory. If you would have used start the initial data would have been interpolated from the boundaries, a cold start in other words.

Start/Restart of ecflow_ui

To start the graphical window for ECFLOW

./Harmonie mon

The graphical window runs independently of the experiment and can be closed and restarted again with the same command. With the graphical interface you can control and view logfiles of each task.

Making local changes

Very soon you will find that you need to do changes in a script or in the source code. Once you have identified which file to edit you put it into the current $HOME/hm_home/my_exp directory, with exactly the same subdirectory structure as in the reference. e.g, if you want to modify a namelist setting 

./Harmonie co nam/harmonie_namelists.pm   # retrieve default namelist harmonie_namelists.pm
+vi nam/harmonie_namelists.pm              # modify the namelist

Next time you run your experiment the changed file will be used. You can also make changes in a running experiment. Make the change you wish and rerun the InitRun task from the viewer. The InitRun task copies all files from your local experiment directory to your working directory $HM_DATA. Once your InitRun task is complete your can rerun the task you are interested in. If you wish to recompile something you will also have to rerun the Build tasks.

Issues

Harmonie exp stop at ECMWF(Atos) due $PERM mounting problem https://github.com/Hirlam/Harmonie/issues/628

Account

In order to change the billing account, open Env_submit and find the definition of scalar_job. Then add a line like

'ACCOUNT' => $submit_type.' --account=account_name' to the definition of the dictionary.

Directory structure

$SCRATCH

In $SCRATCH/hm_home/$EXP you will find

DirectoryContent
binBinaries
libSource code synced from $HM_LIB and compiled code
lib/srcObject files and source code (if you build with makeup, set by MAKEUP_BUILD_DIR)
lib/utilUtilities such as makeup, gl_grib_api or oulan
climateClimate files
YYYYMMDD_HHWorking directory for the current cycle. If an experiment fails it is useful to check the IFS log file, NODE.001_01, in the working directory of the current cycle. The failed job will be in a directory called something like Failed_this_job.
archiveArchived files. A YYYY/MM/DD/HH structure for per cycle data. ICMSHHARM+NNNN and ICMSHHARM+NNNN.sfx are atmospheric and surfex forecast output files
extractVerification input data. This is also stored on the permanent disk $HPCPERM/HARMONIE/archive/$EXP/parchive/archive/extract
ECF.logLog of job submission

ECFS

  • Since $SCRATCH is cleaned regularly we need to store data permanently on ECFS, the EC file system, as well. There are two options for ECFS, ectmp and ec. The latter is a permanent storage and first one is cleaned after 90 days. Which one you use is defined by the`ECFSLOC variable. To view your data type e.g.

    els ectmp:/$USER/harmonie/my_exp

  • The level of archiving depends on ARSTRATEGY in ecf/config_exp.h. The default setting will give you one YYYY/MM/DD/HH structure per cycle data containing:

    • Surface analysis, ICMSHANAL+0000[.sfx]
    • Atmospheric analysis result MXMIN1999+0000
    • Blending between surface/atmospheric analysis and cloud variable from the first guess LSMIXBCout
    • ICMSHHARM+NNNN and ICMSHHARM+NNNN.sfx are atmospheric and surfex forecast model state files
    • PFHARM* files produced by the inline postprocessing
    • ICMSHSELE+NNNN.sfx are surfex files with selected output
    • GRIB files for fullpos and surfex select files
    • Logfiles in a tar file logfiles.tar
    • Observation database and feedback information in odb_stuff.tar.
    • Extracted files for obsmon in sqlite.tar

  • Climate files are stored in the climate directory

  • One directory each for vfld and vobs data respectively for verification data

$PERM

DirectoryContent
HARMONIE/$EXPecflow log and job files
hm_lib/$EXP/libScipts, config files, ecf and suite, source code (not compiled, set by $HM_LIB). Reference with experiment's changes on top

$HPCPERM

In $HPCPERM/hm_home/$EXP

DirectoryContent
parchive/archive/extract/Verification input data.

$HOME on ecflow-gen-${user}-001

DirectoryContent
ecflow_server/ecFlow checkpoint and log files

Cleanup of old experiments

Danger

These commands may not work properly in all versions. Do not run the removal before you're sure it's OK

Once you have complete your experiment you may wish to remove code, scripts and data from the disks. Harmonie provides some simple tools to do this. First check the content of the different disks by

Harmonie CleanUp -ALL

Once you have convinced yourself that this is OK you can proceed with the removal.

Harmonie CleanUp -ALL -go

If you would like to exclude the data stored on e.g ECFS ( at ECMWF ) or in more general terms stored under HM_EXP ( as defined in Env_system ) you run 

Harmonie CleanUp -d

to list the directories intended for cleaning. Again, convince yourself that this is OK and proceed with the cleaning by

Harmonie CleanUp -d -go

You can always remove the data from ECFS directly by running e.g.

erm -R ec:/YOUR_USER/harmonie/EXPERIMENT_NAME

or

erm -R ectmp:/YOUR_USER/harmonie/EXPERIMENT_NAME
  • For more information about cleaning with Harmonie read here
  • For more information about the ECFS commands read here

Debugging Harmonie with ARM DDT

Follow instructions here. Use Run DDT client on your Personal Computer or End User Device

diff --git a/previews/PR1153/System/GitDeveloperDocumentation/index.html b/previews/PR1153/System/GitDeveloperDocumentation/index.html new file mode 100644 index 0000000000..70a8ef5f2b --- /dev/null +++ b/previews/PR1153/System/GitDeveloperDocumentation/index.html @@ -0,0 +1,36 @@ + +GitHub workflow · Harmonie wiki
GitHub

Developing in the Hirlam GitHub organization

Introduction

Since 2018 and CY43 HIRLAM have used git for code revision control and gitolite as the git server on hirlam.org. HIRLAM is now moving to using Github for ''software development and version control''. This page provides information on how to access the GitHub Hirlam organisation and how to commit your developments, specifically Harmonie. As was the case with hirlam.org's gitolite a fork-and-branch workflow will be used to manage developments.

Becoming a member of Hirlam

  1. Create a GitHub account: https://github.com – click on Sign up. Details here
  2. Go to settings and add your full name, company and location to make it easier to identify you
  3. Add your public ssh key(s) to the account. Details here
  4. Contact your friendly System-core to be invited to the GitHub Hirlam organisation

Fork and branch

WP repo=Hirlam/Harmonie

You can create a user fork of Harmonie by doing the following:

  1. Go to https://github.com/Hirlam/Harmonie

  2. Click on Fork to create a fork of Harmonie for your user (USER)

  3. Clone your fork:

    git clone git@github.com:USER/Harmonie.git $HOME/git/github/USER/Harmonie

Further information is available here

Keep your fork synced

  1. In a terminal change directory to the clone of you fork:

    cd $HOME/git/github/USER/Harmonie

  2. List the current configured remote repository for your fork.

    git remote -v
+origin	git@github.com:USER/Harmonie.git (fetch)
+origin	git@github.com:USER/Harmonie.git (push)

  3. Specify a new remote upstream repository that will be synced with the fork.

    git remote add upstream git@github.com:Hirlam/Harmonie.git

  4. Verify the new upstream repository you've specified for your fork.

    git remote -v
+origin	git@github.com:USER/Harmonie.git (fetch)
+origin	git@github.com:USER/Harmonie.git (push)
+upstream	git@github.com:Hirlam/Harmonie.git (fetch)
+upstream	git@github.com:Hirlam/Harmonie.git (push)

  5. Update the dev-CY46h1 branch in your fork.

    git checkout dev-CY46h1
+git pull upstream dev-CY46h1
+git push origin dev-CY46h1

Further information is available here

An alternative approach is to go to your fork on github.com and click "Fetch upstream" which will sync the branch on GitHub followed by a git pull in your clone

Tip

If you put the following in your .bashrc it will show the name of the branch in your prompt (when inside a git repository)

function parse_git_branch () {
+              git branch 2> /dev/null | sed -e '/^[^*]/d' -e 's/* \(.*\)/ (\1)/'
+}
+
+RED="\[\033[0;31m\]"
+YELLOW="\[\033[0;33m\]"
+GREEN="\[\033[0;32m\]"
+NO_COLOR="\[\033[0m\]"
+
+PS1="$GREEN\u@\h$NO_COLOR:\w$YELLOW\$(parse_git_branch)$NO_COLOR\$ "

Contributing developments – dev-CY46h1

Feature branches

Contributions to the dev-CY46h1 branch (and any other branch) should be developed in your Harmonie fork in a development branch (feature/bugfix/...). The following details how you can get your development upstream.

Create a feature branch

cd $HOME/git/github/USER/Harmonie
+git checkout dev-CY46h1
+git checkout -b feature/descriptive_name_for_developments

Keep up to date with dev-CY46h1

  1. Sync your fork as described above

  2. Merge dev-CY46h1 updates in to your branch

    cd $HOME/git/github/USER/Harmonie
+git checkout feature/descriptive_name_for_developments
+git merge dev-CY46h1

Creating a pull request

Once you have committed to your feature branch and wanted them included in the upstream repo you should do the following:

  1. Push your branch to your fork:

    cd $HOME/git/github/USER/Harmonie
+git checkout feature/descriptive_name_for_developments
+git push origin feature/descriptive_name_for_developments

  2. When you push your branch information on how to create a pull request will be presented:

    remote: Resolving deltas: 100% (x/x), completed with x local objects.
+remote: 
+remote: Create a pull request for 'feature/descriptive_name_for_developments' on GitHub by visiting:
+remote:      https://github.com/USER/Harmonie/pull/new/feature/descriptive_name_for_developments
+remote:

  3. Follow this link

    • request a reviewer
    • add labels to the development (feature/enhancement/...)
    • add comments to help with the review process (Testbed members used/Changes expected if any/...)

  4. Once the pull request has been approved by the System-core team it will be merged in to the dev-CY46h1 branch

Further information is available here

Moving my branches from hirlam.org

  1. Add your hirlam.org fork as a remote (HLUSER is your hirlam.org username) 

    cd $HOME/git/github/USER/Harmonie
+git remote add hirlamorgfork https://git.hirlam.org/users/HLUSER/Harmonie
+git fetch hirlamorgfork

  2. For each branch BRANCHNAME you want to move to github

    git checkout -t hirlamorgfork/BRANCHNAME
+git push origin BRANCHNAME

learn git branching is an excellent interactive tool to understand git.

Coding Standards

See Coding standards for Arpège, IFS and Aladin and Arpege/IFS Fortran coding standard (requires ECMWF account)

diff --git a/previews/PR1153/System/HarmonieTestbed/index.html b/previews/PR1153/System/HarmonieTestbed/index.html new file mode 100644 index 0000000000..92c53280db --- /dev/null +++ b/previews/PR1153/System/HarmonieTestbed/index.html @@ -0,0 +1,125 @@ + +Testbed · Harmonie wiki
GitHub

The HARMONIE testbed

The HARMONIE testbed provides a facility to run a number of well defined test cases using the existing script environment in HARMONIE. The ALADIN testbed, Mitraillette runs test on the hart of the model, the dynamical core. The HARMONIE testbed tests the full script system as it is supposed to be used.

Defining the configurations

General

The testbed is a suite that launches and follows new experiments one at a time in a controlled environment. The testbed experiment takes care of compilation and also hosts the climate files generated by the tested configurations. Source and scripts changes shall be done in the testbed experiment and will be synchronized to the child experiment using the hm_CMODS option in HARMONIE.

A number of basic configurations have been defined in scr/Harmonie_configurations.pm as the deviation from the default setup in ecf/config_exp.h, scr/include.ass and suites/harmonie.pm. These configurations are controlled by the script scr/Harmonie_testbed.pl. The script also contains a number of extra configurations tested from time to time. With the current settings, a test of AROME without 3DVAR would look like.


+    # AROME no 3D-VAR but default blending of upper air from boundaries
+    'AROME' => {
+      'description' => 'Standard AROME settings without upper air DA',
+      'PHYSICS'     => 'arome',
+      'SURFACE'     => 'surfex',
+      'DYNAMICS'    => 'nh',
+      'ANAATMO'     => 'blending',
+      'ANASURF'     => 'none',
+      'DFI'         => 'none',
+      'HOST_MODEL'  => 'ifs',
+      'DOMAIN'      => 'DKCOEXP',
+      'VLEV'        => '65',
+      'BDINT'       => '3',
+    },
+

The resulting output, in this case from AROMEBDARO running at ECMWF would look like:


+ Using the configuration AROME_BD_ARO
+
+
+ Input /scratch/hlam/hm_home/testbed_ECMWF.atos.gnu_12413/ecf/config_exp.h  
+ Output ecf/config_exp.h  
+
+ Change BUILD=${BUILD-yes}                     to BUILD=no 
+ Change       BUILD_ROOTPACK=no to BUILD_ROOTPACK=no 
+ Change BINDIR=${BINDIR-$HM_DATA/bin}                 to BINDIR=$HM_COMDAT/testbed_ECMWF.atos.gnu_12413/bin 
+ Change DOMAIN=DKCOEXP                          to DOMAIN=TEST_8 
+ Change VLEV=65                                 to VLEV=HIRLAM_60 
+ Change LL=${LL-06}                             to LL=6 
+ Change DYNAMICS="nh"                           to DYNAMICS=nh 
+ Change PHYSICS="arome"                         to PHYSICS=arome 
+ Change SURFACE="surfex"                        to SURFACE=surfex 
+ Change DFI="none"                              to DFI=none 
+ Change ANAATMO=3DVAR                           to ANAATMO=none 
+ Change ANASURF=CANARI_OI_MAIN                  to ANASURF=none 
+ Change OBDIR=$HM_DATA/observations             to OBDIR=$HM_DATA/../testbed_ECMWF.atos.gnu_12413/observations/ 
+ Change HOST_MODEL="ifs"                        to HOST_MODEL=aro 
+ Change HOST_SURFEX="no"                        to HOST_SURFEX=yes 
+ Change SURFEX_INPUT_FORMAT=lfi                 to SURFEX_INPUT_FORMAT=fa 
+ Change BDLIB=ECMWF                             to BDLIB=AROME 
+ Change BDDIR=$HM_DATA/${BDLIB}/archive/@YYYY@/@MM@/@DD@/@HH@   to BDDIR=$HM_DATA/../testbed_ECMWF.atos.gnu_12413/archive_AROME/@YYYY@/@MM@/@DD@/@HH@/ 
+ Change INT_BDFILE=$WRK/ELSCF${CNMEXP}ALBC@NNN@                 to INT_BDFILE=$ARCHIVE_ROOT/$YY/$MM/$DD/$HH/ELSCF${CNMEXP}ALBC@NNN@ 
+ Change BDSTRATEGY=simulate_operational to BDSTRATEGY=same_forecast 
+ Change BDINT=1                         to BDINT=3 
+ Change SURFEX_PREP="no"                to SURFEX_PREP=yes 
+ Change CLIMDIR=$HM_DATA/climate                to CLIMDIR=$HM_DATA/../testbed_ECMWF.atos.gnu_12413/climate/$DOMAIN/$PHYSICS 
+ Change BDCLIM=$HM_DATA/${BDLIB}/climate        to BDCLIM=$HM_DATA/../testbed_ECMWF.atos.gnu_12413/climate/TEST_11/arome/ 
+ Change INT_SINI_FILE=$WRK/SURFXINI.$SURFEX_OUTPUT_FORMAT       to INT_SINI_FILE=$ARCHIVE_ROOT/$YY/$MM/$DD/$HH/SURFXINI.$SURFEX_OUTPUT_FORMAT 
+ Change ARCHIVE_ECMWF=yes                       to ARCHIVE_ECMWF=no 
+ Change POSTP="inline"                          to POSTP=inline 
+ Change MAKEGRIB=no                             to MAKEGRIB=yes 
+ Add new settings JBDIR=$HM_REV/testbed_data/jb_data 
+ Add new settings LARGE_EC_BD=no 
+ Add new settings PLAYFILE=harmonie 
+ Add new settings config=AROME 
+
+
+ Input /scratch/hlam/hm_home/testbed_ECMWF.atos.gnu_12413/Env_submit 
+ Output Env_submit 
+
+ Change $nprocx=16; to $nprocx=2 
+ Change $nprocy=16; to $nprocy=2 
+ Change $nprocx=8; to $nprocx=2 
+ Change $nprocy=16; to $nprocy=2 
+

As seen from the example above the script also changes the submission rules. These rules can be defined, per host, at the end of the script. Other host specific settings may also be defined to allow local changes of the test environment. In Harmonie_testbed.pl we find e.g. changes for the default at ECMWF:


+ 'default' => {
+   'BINDIR'     => '$HM_COMDAT/'.$EXP.'/bin',
+   'BDDIR'      => '$HM_DATA/../'.$EXP.'/$BDLIB/$DOMAIN',
+   'OBDIR'      => '$HM_DATA/../'.$EXP.'/observations/$DOMAIN',
+   'LARGE_EC_BD' => 'no',
+   'CLIMDIR'    => '$HM_DATA/../'.$EXP.'/climate/$DOMAIN/$PHYSICS',
+  },
+

The host dependent settings will be imposed on all configurations. If a setting in any configuration is in conflict with the host settings the configuration settings will be used.

Define changes in harmonie.pm

The changes to msms/harmonie.pm are controlled with a special syntax, like in the AROME_JB configuration.

   # AROME Structure function derivation
+   'AROME_JB' => {
+     'description' => 'Derive structure functions for AROME 3DVAR',
+      ...
+      'harmonie.pm' => ['ENSBDMBR','ENSCTL','SLAFLAG'],
+        'ENSBDMBR'    => '[1,2,3,4]',
+        'ENSCTL'      => '["001","002","003","004"]',
+        'SLAFLAG'     => '[0]',
+    },
+

The harmonie.pm key determines which keyword to find and replace. The list guarantees that the same keywords are not changed in e.g. ecf/config_exp.h .

Testbed members

NameDOMAINDTGsDependenciesDescriptionActive in
AROMETEST_112017093018-2017100100NoneAROME with 2-D decompositionCY43
AROME_1DTEST_112017093018-2017100100NoneAROME with 1-D decompositionCY43
AROME_2DTEST_112017093018-2017100100NoneAROME with 2-D decomposition
AROME_3DVARIRELAND1502017093018-2017100100NoneAROME_3DVARCY43
AROME_3DVAR_MARSOBSIRELAND1502017093018-2017100100NoneAROME_3DVAR including non-conventional observations from MARSCY43
AROME_3DVAR_2PTEST_112017093018-2017100100NoneAROME_3DVAR with two patches
AROME_4DVARSCANDINAVIA2017093021-2017100100NoneAROME_4DVAR
AROME_BD_ALATEST_82017093018-2017100100ALAROAROME with ALARO LBCs
AROME_BD_ALA_AROTEST_2.52017093018-2017100100AROME_BD_ALAAROME with AROME LBCs
AROME_BD_AROTEST_82017093018-2017100100AROMEAROME with AROME LBCs, no IO-serverCY43
AROME_BD_ARO_IO_SERVTEST_82017093018-2017100100AROMEAROME with AROME LBCs, with IO-serverCY43
AROME_BD_ARO_2PTEST_82017093018-2017100100AROMEAROME two patches with AROME LBCs
AROME_CLIMSIMTEST_112012053100-2012060200NoneAROME climate simulation, netcdf outputCY43
AROME_EKFTEST_112017093018-2017100100NoneAROME with CANARI_EKF_SURFEX
AROME_EPS_COMPTEST_112017093018-2017100100HarmonEPSAROME_3DVAR comparison of EPS controlCY43
AROME_MUSCTEST_112017093018-2017100100AROMEAROME MUSCCY43
AROME_NONETEST_112017093018-2017100100NoneAROME no SFC/UA DA
AROME_NONE_2DTEST_112017093018-2017100100NoneAROME no SFC/UA DA
AROME_NONE_BD_ALA_NONETEST_82017093018-2017100100ALARO_NONEAROME no SFC/UA DA with ALARO LBCs
AROME_NONE_BD_ARO_NONETEST_82017093018-2017100100AROME_NONEAROME no SFC/UA DA with AROME LBCs
ARONE_JBTEST_112017093018-2017100100NoneGeneration of JB statisticsCY43
HarmonEPSTEST_112017093018-2017100100AROME_EPS_COMPHarmonEPSCY43
HarmonEPS_IFSENSBDTEST_112019111021-2019111103AROME_EPS_COMPHarmonEPS with IFSENS boundariesCY43
ALARO1_3DVAR_OLDTEST_112017093018-2017100100NoneALARO1 with 3DVAR and old_surface
ALARO_1DTEST_112017093018-2017100100NoneALARO with 1-D decomposition
ALARO_2DTEST_112017093018-2017100100NoneALARO with 2-D decomposition
ALARO_3DVAR_OLDTEST_112017093018-2017100100NoneALARO3DVAR with oldsurface
ALARO_EKFTEST_112017093018-2017100100NoneALARO with CANARI_EKF_SURFEX
ALARO_EPS_COMPTEST_112017093018-2017100100???ALARO EPS?
ALARO_MF_60TEST_112017093018-2017100100NoneALARO with VLEV=MF_60
ALARO_MUSCTEST_112017093018-2017100100ALAROALARO MUSC
ALARO_NH_1DTEST_112017093018-2017100100NoneALARO with NH dynamics and 1-D decomposition
ALARO_NH_2DTEST_112017093018-2017100100NoneALARO with NH dynamics and 2-D decomposition
ALARO_NONETEST_112017093018-2017100100NoneALARO with no SFC/UA DA
ALARO_OLDTEST_112017093018-2017100100NoneALARO with old_surface
ALARO_OLD_MUSCTEST_112017093018-2017100100ALAROALARO MUSC with old_surface

Testbed domains

The playfile

The playfile used for the testbed is msms/testbed.tdf. Here each configuration is defined with a trigger, a task to create and one to follow the child experiments. Configurations inluded are listed in the TESTBED_LIST environment variable in ecf/config_exp.h

 TESTBED_LIST="ALADIN ALADIN_3DVAR AROME"

If the child experiment fails the Follow_exp task will also fail. When the child experiment problem has been corrected and the task restarted, the follow task should be restarted. When, finally, the child experiment is finished the test family will be completed and next test case will be triggered.

Input data

The standard testbed configuration is run over several. The domain and resolution is chosen to be computationally cheap and not to give meteorologically interesting and meaningful results. Input data for running the testbed is ECMWF boundaries, observations, background error statistics and climate files. The latest data may be found on /scratch/hlam/hm_home/some_recent_testbed_experiment/testbed_data and the data included is the following:

  • ECMWF boundaries for the tested periods
  • Observations
  • Background errors
  • Climate files
  • Forcing data for nested experiments

Download the data to your machine and put it on the default location $HM_REV/testbed_data or define your location in scr/Harmonie_testbed.pl. If you wish to test the climate generation you simple redefine the location of the climate files or remove the existing ones in the climate directory of the testbed. The testbed data typically includes the following:

Starting the testbed

The testbed experiment is setup as any normal experiment with

Harmonie setup -r REVISION -h HOST

The testbed is launched by

Harmonie testbed

Before you start the testbed you should define your reference experiment. The reference experiment is picked automatically as an experiment with the same name but with lower revision number. The reference experiment can also be defined by the by setting REFEXP in ecf/config_exp.h as the full path to another testbed experiment:

export REFEXP=/scratch/hlam/hm_home/test_37h12
+

Evaluation of the result

At the end of each testbed run the results are compared to a reference experiment using the script scr/Testbed_copmp. The script uses xtool to check the numerical difference for the following output:

  • ECMWF input data
  • climate files
  • Interpolated boundary files
  • Output forecast files in FA format
  • Output forecast files in GRIB format
  • vfld/vobs files

In addition the internal consistency is checked by comparing runs with

  • 1D vs 2D decomposition
  • EPS control vs a deterministic run
  • Run with and without IO-server

The choice of internal consistency tests reflects the history of problems and inconsistencies encountered.


+HARMONIE testbed results from ecflow-gen-hlam-001
+Sat Nov 16 20:41:27 GMT 2019
+
+Configuration: ECMWF.atos.gnu
+
+Compare experiment testbed_ECMWF.atos.gnu_12414 and testbed_ECMWF.atos.gnu_12413
+
+Check:ecmwf_bd
+  Output grib file summary (differ/missing/total) 0/0/37
+   comparison took 164 seconds
+ Configuration ecmwf_bd is equal
+
+Check:climate
+  Output internal file summary (differ/missing/total) 0/0/52
+   comparison took 34 seconds
+ Configuration climate is equal
+
+Check:AROME_3DVAR
+  Output internal file summary (differ/missing/total) 0/0/36
+   comparison took 79 seconds
+  Output grib file summary (differ/missing/total) 0/0/96
+   comparison took 91 seconds
+  vfld/vobs file summary (differ/missing/total) 0/0/36
+   comparison took 4 seconds
+ Configuration AROME_3DVAR is equal
+
+ ...
+
+Compare AROME_BD_ARO and AROME_BD_ARO_IO_SERV
+ No differences found
+   comparison took 423 seconds
+
+Testbed comparison complete
+
+[ Status: OK]
+
+ For more details please check /scratch/hlam/hm_home/testbed_ECMWF.atos.gnu_12414/testbed_comp_12414.log_details
+

All the logs from a testbed experiment are posted to the mail address MAIL_TESTBED set in ecf_config_exp.h. If a github token GH_TOKEN is set in scr/Testbed_comp the results will also be posted on Testbed output discussions on github using the GraphQL API. See github settings to create a token. Tick at least the repo box. Save your token in $HOME/.ssh/gh_testbed.token or in $HOME/env/gh_testbed.token and chmod 600 and it will be used. The test returns three different status signals

  • OK means that all configurations reproduces the result of your reference experiment.
  • OK, BUT NO COMPARISON means that the suit run through but that there was nothing to compare with
  • FAILED means that the internal comparisons failed
  • DIFFER means that one more configurations differ from your reference experiment
  • FAILED and DIFFER is a combination of the last two

In addition to the summary information detailed information can be found in the archive about the art of the difference.

When to use the testbed

It is recommended to use the testbed when adding new options or make other changes in the configurations. If your new option is not activated the result compared with the reference experiment should be the same, if not you have to start debugging. When changing things for one configuration it's easy to break other ones. In such cases the testbed is a very good tool make sure you haven't destroyed anything.

diff --git a/previews/PR1153/System/Local/QuickStartLocal/index.html b/previews/PR1153/System/Local/QuickStartLocal/index.html new file mode 100644 index 0000000000..4935d30832 --- /dev/null +++ b/previews/PR1153/System/Local/QuickStartLocal/index.html @@ -0,0 +1,15 @@ + +Local · Harmonie wiki
GitHub

Running Harmonie on your local platform

Introduction

These "quick start instructions" assumes that someone has already put in place a valid configuration for your local platform, CONFIG=linux.local for example.

The Harmonie system runs through a number of steps to help you complete your experiment. The chain can be summarized like:

  • Configure and start the experiment: This is where you define your domain, choose your settings and specify the period for your experiment.

Once you have done this you can start the system and let it create the basic infrastructure

  • Setup the necessary directories and copy the system files needed (InitRun, Prepare_cycle)
  • Compile the binaries you need to run your experiment (Build)
  • Create the constant climate files specifying your domain (Climate)

With the basic setup and files in place we can proceed to the integration part where we have three loops taking care of

  • Prepare boundaries and observations (MakeCycleInput)
  • Run assimilation and forecasts (Date)
  • Post process and archive the result (Postprocessing)

The three different task are allowed to run ahead/after each other to get a good throughput.

The configuration, the full suite and the relation between different tasks is controlled by the scheduler. This documentation describes how to get started with your first experiment. The description is general for a single host.

Following example shows the steps to launch an Harmonie experiment my_exp.

If this is the first time to install HARMONIE on your local platform please take a look at the basic install instructions here.

Configure your experiment

  • Create an experiment directory under $HOME/hm_home and use the master script Harmonie to set up a minimum environment for your experiment. bash mkdir -p $HOME/hm_home/my_exp cd $HOME/hm_home/my_exp PATH_TO_HARMONIE/config-sh/Harmonie setup -r PATH_TO_HARMONIE -h YOURHOST

where

  • -r is the path to your downloaded version of HARMONIE
  • -h tells which configuration files to use. At ECMWF config.ECMWF.atos is the default one. List PATH_TO_HARMONIE/config-sh/config.* for available HOST configurations
  • This setup command provides the default setup which currently is AROME physics with CANARI+OI_MAIN surface assimilation and 3DVAR upper air assimilations with 3h cycling on a domain covering Denmark using 2.5km horizontal resolution and 65 levels in the vertical.
  • Now you can edit the basic configuration file ecf/config_exp.h to configure your experiment scenarios. Modify specifications for model domain, physics (AROME, ALARO), data locations, settings for dynamics, physics, domain, coupling host model etc. Read more about the options in here. You can also use some of the predefined configurations by calling Harmonie with the -c option:
mkdir $HOME/hm_home/my_exp
+cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie setup -r PATH_TO_HARMONIE -h YOURHOST -c CONFIG

where CONFIG is one of the setups defined in scr/Harmonie_configurations.pm. If you give -c with out an argument or a non existing configuration a list of configurations will be printed.

  • In some cases you might have to edit the general system configuration file, Env_system. See here for further information
  • The rules for how to submit jobs are defined in Env_submit. See here for further information
  • If you experiment in data assimilation you might also want to change scr/include.ass

Start your experiment

Launch the experiment by giving start time, DTG, end time, DTGEND, and forecast length, LL

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie start DTG=YYYYMMDDHH DTGEND=YYYYMMDDHH LL=12
+# e.g., PATH_TO_HARMONIE/Harmonie start DTG=2012122400 DTGEND=2012122406 LL=12

If you would like to only run long forecasts at 00/12 UTC and short (3h) at 03/06/09/15/18/21, you specify the longer forecast length as LLMAIN. 

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie start DTG=2012122400 LLMAIN=24

If successful, ecflow will identify your experiment name and start building your binaries and run your forecast. If not, you need to examine the mSMS log file $HM_DATA/mSMS.log. $HM_DATA is defined in your Env_system file. At ECMWF $HM_DATA=$SCRATCH/hm_home/$EXP where $EXP is your experiment name. Read more about where things happen further down.

Continue your experiment

If your experiment have successfully completed and you would like to continue for another period you should write

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie prod DTGEND=YYYYMMDDHH LL=12

By using prod you tell the system that you are continuing the experiment and using the first guess from the previous cycle. The start date is take from a file progress.log created in your $HOME/hm_home/my_exp directory. If you would have used start the initial data would have been interpolated from the boundaries, a cold start in other words.

Start/Restart of ecflow_ui

To start the graphical window for ecFlow on ECMWF type

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie mon

The graphical window, mXCdp runs independently of the mSMS job and can be closed and restarted again with the same command. With the graphical interface you can control and view logfiles of each task.

Making local changes

Very soon you will find that you need to do changes in a script or in the source code. Once you have identified which file to edit you put it into the current $HOME/hm_home/my_exp directory, with exactly the same subdirectory structure as in the reference. e.g, if you want to modify a namelist setting 

cd $HOME/hm_home/my_exp
+PATH_TO_HARMONIE/config-sh/Harmonie co nam/harmonie_namelists.pm         # retrieve default namelist harmonie_namelists.pm
+vi nam/harmonie_namelists.pm                        # modify the namelist

Next time you run your experiment the changed file will be used. You can also make changes in a running experiment. Make the change you wish and rerun the InitRun task in the mXCdp window. The !InitRun task copies all files from your local experiment directory to your working directory $HM_DATA. Once your InitRun task is complete your can rerun the task you are interested in. If you wish to recompile something you will also have to rerun the Build tasks. Read more about how to control and rerun tasks in mini-SMS from mXCdp.

Directory structure

On most platforms HARMONIE compiles and produces all its output data under $HM_DATA (defined in ~/hm_home/my_exp/Env_system)

= Description == Location =
Binaries$BINDIR (set in ecf/config_exp.h ), default is $HM_DATA/bin
libraries, object files & source code$HM_DATA/lib/src if MAKEUP=yes, $HMDATA/gmkpack_build if MAKEUP=no
Scripts$HM_LIB/scr
config files (Envsystem & Envsystem$HM_LIB linked to files in $HM_LIB/config-sh
ecf scripts and main config$HM_LIB/ecf
ecFlow suite definitions$HM_LIB/suites
Utilities such as gmkpack, gl & monitor$HM_DATA/lib/util
Climate files$HM_DATA/climate
Working directory for the current cycle$HM_DATA/YYYYMMDD_HH
Archived files$HM_DATA/archive
Archived cycle output$HM_DATA/archive/YYYY/MM/DD/HH
Archived log files$HM_DATA/archive/log/HM_TaskFamily_YYYYMMDDHH.html where TaskFamily=MakeCycleInput,Date,Postprocessing
Task log files$JOBOUTDIR (set in Env_system) usually $HM_DATA/sms_logfiles
Verification data (vfld/vobs/logmonitor)$HM_DATA/archive/extract
Verification (monitor) results$HM_DATA/archive/extract/WebgraF
"Fail" directory$HM_DATA/YYYYMMDD_HH/Failed_Family_Task (look at ifs.stat,NODE.001_01, fort.4

Archive contents

$HM_DATA/archive/YYYY/MM/DD/HH is used to store "archived" output from HARMONIE cycles. The level of archiving depends on ARSTRATEGY in ecf/config_exp.h . The default setting is medium which will keep the following cycle data:

  • Surface analysis: ICMSHANAL+0000
  • Atmospheric analysis result: MXMIN1999+0000
  • Blending between surface/atmospheric analysis and cloud variable from the first guess: ANAB1999+0000
  • ICMSHHARM+NNNN and ICMSHHARM+NNNN.sfx are atmospheric and surfex forecast output files
  • PFHARM* files produced by the inline postprocessing
  • GRIB files produced by the conversion of FA output files to GRIB if MAKEGRIB=yes in ecf/config_exp.h
  • ODB databases and feedback information in odb_stuff.tar

Cleanup of old experiments

Once you have complete your experiment you may wish to remove code, scripts and data from the disks. Harmonie provides some simple tools to do this. First check the content of the different disks by

 Harmonie CleanUp -ALL

Once you have convinced yourself that this is OK you can proceed with the removal.

 Harmonie CleanUp -ALL -go

If you would like to exclude the data stored HM_DATA ( as defined in Env_system ) you run 

 Harmonie CleanUp -d

to list the directories intended for cleaning. Again, convince yourself that this is OK and proceed with the cleaning by

 Harmonie CleanUp -d -go

NOTE that these commands may not work properly in all versions. Do not run the removal before you're sure it's OK

diff --git a/previews/PR1153/System/MFaccess/index.html b/previews/PR1153/System/MFaccess/index.html new file mode 100644 index 0000000000..813a6ee341 --- /dev/null +++ b/previews/PR1153/System/MFaccess/index.html @@ -0,0 +1,97 @@ + +MF Access · Harmonie wiki
GitHub

Using Météo-France Servers

Introduction

The procedure to get access to MF servers and their read-only git repository is outlined here

First steps

  • Discuss your requirements for access to MF servers with the HIRLAM System project leader, Daniel Santos (dsantosm@aemet.es).
  • Download two forms "Undertaking for the use of Météo-France computer resources" and "Demande d'authorisation de conexion au résau de Météo Franc" from http://www.cnrm.meteo.fr/aladin/spip.php?article157.
    • The "Undertaking for the use of Météo-France computer resources" form is to be signed by you only
    • The "Demande d'authorisation de conexion au résau de Météo France" must be signed by you and your department head. It must also include an institute stamp. You should enter details in Contacts, Compte d'accesés aux machines du Centre de Cacul and at the bottom with authorization from you institute manager with institute stamp. - A scan of both forms with a brief introductory note should be sent to Eric Escaliere (eric.escaliere@meteo.fr) and cc'ed to Daniel Santos (dsantosm@aemet.es) and Claude Fischer (claude.fischer@meteo.fr).
    • Be careful with the "Machine du client". I had to specify the name and IP address of my institute's Firewall server as this is what the outside world sees when I access external servers from my PC.
  • Météo-France will send (by post) your username (Identificateur) and password (Mot de passe) for log in.
  • The authentication process itself remains in two steps (first “parme”, then target), as before.
  • A few specific examples follow (see MF's instructions for full details):
    • beaufix:
ewhelan@realin23:gcc-8.3.1:.../~> which beaufix
+alias beaufix='telnet beaufix.meteo.fr'
+	/usr/bin/telnet
+ewhelan@realin23:gcc-8.3.1:.../~> beaufix 
+Trying 137.129.240.110...
+Connected to beaufix.meteo.fr.
+Escape character is '^]'.
+Check Point FireWall-1 authenticated Telnet server running on mascarpone
+User: whelane
+password: your_parme_password
+User whelane authenticated by FireWall-1 authentication
+
+Connected to 137.129.240.110
+Red Hat Enterprise Linux Server release 6.9 (Santiago)
+Kernel 2.6.32-696.6.3.el6.x86_64 on an x86_64
+beaufixlogin0 login: whelane
+Password: your_ldap_password
+Last login: Tue Oct 13 10:15:53 from gw2.met.ie
+ _                           __  _       
+| |                         / _|(_)      
+| |__    ___   __ _  _   _ | |_  _ __  __
+| '_ \  / _ \ / _` || | | ||  _|| |\ \/ /
+| |_) ||  __/| (_| || |_| || |  | | >  < 
+|_.__/  \___| \__,_| \__,_||_|  |_|/_/\_\ 
+
+[whelane@beaufixlogin0 ~]$

What next? TO BE CONFIRMED

Access to MF servers via parme

  • Once you are happy that you can access PARME from your PC you should once again contact Eric Escaliere (eric.escaliere@meteo.fr) and request login details for merou (Eric will send you a temporary password) and LDAP login details to front-id to enable access to COUGAR, YUKI, BEAUFIX and ID-FRONT

  • An automatic e-mail will be sent from expl-identites@meteo.fr with you LDAP repository password.

  • front-id requires certain criteria for your password. These are detailed in French below. When you have received LDAP login details for front-id:

    ewhelan@eddy:~> telnet parme.meteo.fr
+Trying 137.129.20.1...
+Connected to parme.meteo.fr.
+Escape character is '^]'.
+Check Point FireWall-1 authenticated Telnet server running on parmesan
+User: whelane
+password: ********
+User whelane authenticated by FireWall-1 authentication
+Host: front-id
+
+Connected to id-front
+Red Hat Enterprise Linux AS release 4 (Nahant Update 5)
+Kernel 2.6.9-55.ELsmp on an x86_64
+login: whelane
+Password: 
+Last login: Mon Nov  4 05:14:22 from gw2.met.ie
+Bienvenue EOIN WHELAN
+Vous pouvez changer votre mot de passe
+-------------------------------------------------------------------------
+- Controle de validite sur les mots de passe avant de poster la demande -
+- Le OLD doit etre fourni. -
+- Au moins 8 car, au plus 20 car. -
+- Au moins 2 car. alpha et 2 car. non-alpha. -
+- Ne pas ressembler a UID NAME et OLD sur une syllabe de + de 2 car. -
+-------------------------------------------------------------------------
+-------------------------------------------------------------------------
+Hello EOIN WHELAN
+You may change your password
+-------------------------------------------------------------------------
+- Validity control before demand acceptation -
+- You must enter the old password first -
+- The new password must contain: -
+- At least 8 characters, 20 characters maximum -
+- At least 2 alphanumeric characters and 2 non-alphanumeric characters -
+- The passwd must contain a part of UID NAME -
+-------------------------------------------------------------------------
+Changing password for user 'whelane(56064)'.
+Enter login(LDAP) password: 
+New password: 
+Re-enter new password: 
+Votre mot de passe a ete change

  • When you have received login details for merou from Eric:

    ewhelan@eddy:~> telnet parme.meteo.fr
+Trying 137.129.20.1...
+Connected to parme.meteo.fr.
+Escape character is '^]'.
+Check Point FireWall-1 authenticated Telnet server running on parmesan
+User: whelane
+password: ********
+User whelane authenticated by FireWall-1 authentication
+Host: merou
+
+Connected to merou
+Red Hat Enterprise Linux Server release 5.6 (Tikanga)
+Kernel 2.6.18-238.el5 on an x86_64
+login: whelane
+Password: 
+Last login: Tue Nov  5 10:06:35 from gw2.met.ie
+[whelane@merou ~]$ passwd
+Changing password for user whelane.
+Changing password for whelane
+(current) UNIX password: 
+New UNIX password: 
+Retype new UNIX password: 
+passwd: all authentication tokens updated successfully.
+[whelane@merou ~]$

Access to (read-only) MF git arpifs git repository

MF use ssh keys to allow access to their read-only git repository. If approved by the HIRLAM System PL you should request access to the repository by sending a request e-mail to Eric Escaliere and cc'ed to Daniel Santos and Claude Fischer your ssh public key attached.

Once you have been given access you can create a local clone by issuing the following commands:

cd $HOME
+mkdir arpifs_releases
+cd arpifs_releases
+git clone ssh://reader054@git.cnrm-game-meteo.fr/git/arpifs.git

Happy gitting!

diff --git a/previews/PR1153/System/ReleaseProcess/index.html b/previews/PR1153/System/ReleaseProcess/index.html new file mode 100644 index 0000000000..aa2578a49b --- /dev/null +++ b/previews/PR1153/System/ReleaseProcess/index.html @@ -0,0 +1,6 @@ + +Harmonie release process · Harmonie wiki
GitHub

Harmonie release process

This page describes the release process for tagging new Harmonie versions

Harmonie repository organization

In the past we used the concept of trunk(svn) or develop(git) for the development of Harmonie-Arome codes. Since CY46 we decided to used dev-CYXXhX as development branch to be more clear about the harmonie version under development.

Harmonie-AROME naming convection

Using a common T(Toulouse) cycle of the ACCORD consortium from the IAL repository the development of an Harmonie-Arome version starts.

  • The naming convention is using the number of their cycle of T cycle used as base.
  • The h letter is used to indicate that it is, or will be, an Harmonie-Arome CSC that differs from the T base code version.
  • The first number after the h refers to the version of T cycle version used as base. (e.g. CY46T1 is used as base for dev-CY46h1)

Tagging

In Hirlam, various tagging prior to official releases are made to provide user communities with a 'frozen' code set, even though the code has not necessarily been fully validated. These codes are often labeled as alpha, beta, rc.

  • Alpha release (e.g. harmonie-46h1.alpha.1): a snapshot of dev branch which is not mature both technically and meteorologically
  • Beta release (e.g. harmonie-46h1.beta.1): a snapshot of dev branch which is deemed technically mature for evaluation and meteorological validation. On the other hand, there could still be possibility for more features to add
  • Target releases (e.g. harmonie-43h2.2.target.2 and harmonie-43h2.2.target.3): pre-release tagging for final meteorological evaluation
  • Release candidate(e.g. harmonie-43h2.2.rc1): pre-release tagging for final evaluation
  • Official release (e.g. harmonie-43h2.2): mature for operational use
    • The second number refers the number of the Harmonie-Arome release technically and meteorological quality assured
    • A third number could appear in the name for a minor update, a technical release necessities or other aspects.(e.g., harmonie-43h2.2.1
    • Also some bugfix branches could be active using the bf in the naming (e.g.harmonie-43h2.2_bf)
diff --git a/previews/PR1153/System/StandaloneOdb/index.html b/previews/PR1153/System/StandaloneOdb/index.html new file mode 100644 index 0000000000..a00ed15db7 --- /dev/null +++ b/previews/PR1153/System/StandaloneOdb/index.html @@ -0,0 +1,71 @@ + +Stand alone ODB · Harmonie wiki
GitHub

ODB software

Get the software

To make best use of ODB information produced by your Harmonie experiment one should use ODB and ODB-API software developed by ECMWF. Below are instruction on how to obtain the software from ECMWF.

ODB-API

ODB-API software is open source and released under an Apache licence

ODB

ODB stands for Observational !DataBase. It is database software to store and retrieve large amounts of meteorological numerical data in an efficient manner while used from within IFS. ODB software mimics relational database queries through its ODB/SQL -compiler and accesses data currently via a Fortran90 library interface. The original documentation is available here

Building your ODB software

The ODB-API Software bundle uses cmake https://www.cmake.org to configure the make files used to compile the software. The instructions below worked with Redhat 7/GCC 4.8.5 and CentOS 7/GCC 4.8.5. On newer systems python functionality may have to be switched off with -DENABLE_PYTHON=OFF.

VERSION=0.18.1
+wget https://confluence.ecmwf.int/download/attachments/61117379/odb_api_bundle-${VERSION}-Source.tar.gz
+gunzip odb_api_bundle-${VERSION}-Source.tar.gz
+tar -xvf odb_api_bundle-${VERSION}-Source.tar
+cd odb_api_bundle-${VERSION}-Source
+mkdir build
+cd build
+cmake.. -DCMAKE_INSTALL_PREFIX=/opt/metapp/odb_api/${VERSION}/gnu \
+-DENABLE_ODB_API_SERVER_SIDE=ON -DENABLE_FORTRAN=ON \
+-DENABLE_GRIB=OFF -DENABLE_ODB_SERVER_TIME_FORMAT_FOUR_DIGITS=ON \
+-DENABLE_PYTHON=ON -DENABLE_ODB=ON -DODB_SCHEMAS="ECMA;CCMA"
+make -j 2
+ctest
+make install

Building on Fedora systems

To compile the odb_api on a Fedora workstation (F35), the following additional flags needed to be added to the cmake command above:

-DCMAKE_Fortran_FLAGS='-fallow-argument-mismatch'

Additionally the following flag may be needed (on F36):

-DCMAKE_SHARED_LINKER_FLAGS='-lgfortran'

Furthermore, compilation failed in odb_api_bundle-0.18.1-Source/odb_api/src/odb_api/sqly.y (error: 'yyscan_t' was not declared in this scope). This can be fixed with:

sed -i '6i %code requires {typedef void *yyscan_t;}' odb_api_bundle-${VERSION}-Source/odb_api/src/odb_api/sqly.y

So, from start to finish:

VERSION=0.18.1
+wget https://confluence.ecmwf.int/download/attachments/61117379/odb_api_bundle-${VERSION}-Source.tar.gz
+tar xvfz odb_api_bundle-${VERSION}-Source.tar.gz
+sed -i '6i %code requires {typedef void *yyscan_t;}' odb_api_bundle-${VERSION}-Source/odb_api/src/odb_api/sqly.y
+mkdir build
+cd build
+cmake ../odb_api_bundle-${VERSION}-Source -DCMAKE_INSTALL_PREFIX=$HOME/install/odb_api/${VERSION}/gnu \
+ -DCMAKE_Fortran_FLAGS='-fallow-argument-mismatch' \
+[-DCMAKE_SHARED_LINKER_FLAGS='-lgfortran' \]
+ -DENABLE_ODB_API_SERVER_SIDE=ON -DENABLE_FORTRAN=ON \
+ -DENABLE_GRIB=OFF -DENABLE_ODB_SERVER_TIME_FORMAT_FOUR_DIGITS=ON \
+ -DENABLE_PYTHON=OFF -DENABLE_ODB=ON -DODB_SCHEMAS="ECMA;CCMA"
+make -j 4
+ctest
+make install

ACTION: FOR EOIN: everything below here needs to be updated

ODB data

Convert ODB-1 to ODB-2

Details on how to convert your ODB-1 (Harmonie experiment) databases to ODB-2 using odb_migrator are described here. I have used version 0.9.31 of ODB-API (I have had some problems with 0.9.32). I will use a Harmonie CCMA conventional ODB-1 database as an example:

tar -xvf odb_ccma.tar
+cd odb_ccma/CCMA/
+dcagen
+cd ../../
+ls -l ../conv.38h1.sql
+which odb_migrator
+/opt/metlib/odb_api/0.9.31/gnu/bin/odb_migrator -addcolumns "expver='    38h1',class=2,stream=1025,type=264" odb_ccma/CCMA ../conv.38h1.sql var${DTG}.odb
+ls -l var${DTG}.odb

Here is the SQL file used: conv.38h1.sql. To construct my conv.38h1.sql file did carried out the following commands:

cd odb_ccma/CCMA/
+odbsql -q "select * from desc,timeslot_index,hdr,body" | head -1

Instructions for use on ecgb

On ecgb I have installed odb_migrator in my own account. ODB developers have promise to provide a "system" installation of odbmigrator soon. The next version of ODB-API on ecgb should include *odbmigrator*. My installation is here:

/home/ms/ie/dui/odbapi/0.9.31

To produce your own ODB-2 file from a Harmonie CCMA tar ball on ecgb:

module load odb
+export PATH=/home/ms/ie/dui/odbapi/0.9.31/bin:$PATH
+export LD_LIBRARY_PATH=/home/ms/ie/dui/odbapi/0.9.31/lib:$LD_LIBRARY_PATH
+cd $SCRATCH
+mkdir ODB2odb
+cd ODB2odb
+## copy your odb_stuff.tar/odb_ccma.tar file from ECFS/your home system to this directory
+## eg -- ecp ec:/dui/harmonie/refSonde38h1p1/2013/12/27/00/odb_stuff.tar .
+tar -xvf odb_stuff.tar
+tar -xvf odb_ccma.tar
+cd odb_ccma/CCMA/
+dcagen
+cd ../../
+odb_migrator odb_ccma/CCMA -addcolumns "expver='refSonde',class=2,stream=1025,type=264" /home/ms/ie/dui/odbapi/conv.38h1.sql conv2013122700.odb
+odb header conv2013122700.odb
+odb sql 'select distinct varno' -i conv2013122700.odb
+odb sql 'select count(*) where varno=2' -i conv2013122700.odb
+#
+rm -f bdstrategy odb*.tar ## tidy up the directory if you wish
+rm -rf odb_ccma

ODB visualisation

ODB-2 data can be visualized (directly) using Metview. On local platforms Metview must be built with ODB support (that uses ODB-API software) to visualize ODB-2 data. Here is an example, odbmap.mv4, of using Metview on ecagte to visualize ODB-2 data using a Metview Macro. This example requires an ODB-2 data file as input. Optionally this macro can also plot domain grid-points from a Harmonie GRIB file (called dom.grib) to indicate the extent of your Harmonie model domain.

  • Usage:
    odbmap:: Usage: metview -b odbmap.mv4 inputfile odbvar odbrequest odblegend outputtype
+odbmap::   where: inputfile  -- ODB-2 file
+odbmap::   where: odbvar     -- ODB variable to be plotted
+odbmap::                     -- (enclosed with inverted commas)
+odbmap::   where: odbrequest -- ODB SQL request 
+odbmap::                     -- (enclosed with inverted commas)
+odbmap::   where: odblegend  -- legon/legoff
+odbmap::   where: outputtype -- ps/png
  • An example to plot 2m temperature observation values on 25th December 2013 at 12z:
    cd  $SCRATCH
+cp -r /home/ms/ie/dui/odbMacroTest .
+cd odbMacroTest
+metview4 -b odbmap.mv4 conv201312.odb "obsvalue" "andate=20131225 and antime=120000 and varno=39" legon png
+xv odbmap.1.png
diff --git a/previews/PR1153/System/TheHarmonieScript/index.html b/previews/PR1153/System/TheHarmonieScript/index.html new file mode 100644 index 0000000000..748f7ea1bc --- /dev/null +++ b/previews/PR1153/System/TheHarmonieScript/index.html @@ -0,0 +1,20 @@ + +The Harmonie script · Harmonie wiki
GitHub

The Harmonie main script

The Harmonie script is the main user interface to the harmonie system. It is used to setup, start, check and control your experiment and environment. Below follows the most useful commands. There are other commands inherited from the HIRLAM environment that may or may not work. For a full list check scr/Start, scr/Actions, scr/Actions.pl.

  • Harmonie setup [ -r REVISION] [ -h HOST] [ -d DOMAIN] [ -c CONFIGURATION] [ -l LEVELS] where:

    • REVISION is the path to the version of harmonie you are working with.
    • HOST is the name of the host you are working on. There should exist corresponding config-sh/config.HOST.
    • CONFIGURATION is one of the predefined configurations in scr/Harmonie_testbed.pl. It a fast way to setup your favourite configuration.
    • DOMAIN is one of the predefined domains in ecf/config_exp.h
    • LEVELS is one of the predefined level definitions in scr/Vertical_levels.pl

  • Harmonie start DTG=YYYYMMDDHH [ DTGEND=YYYYMMDDHH] [ optional environment variables] launches a cold start run.

    • DTG is the initial time of your experiment
    • Several other optional variables can be given like
      • PLAYFILE=FILENAME use a different ecflow suite definition file. Default is harmonie.tdf
      • BUILD=yes|no to turn on and off compilation
      • CREATE_CLIMATE=yes|no to turn on and off generation of climate files
      • Any environment variable that you would like to send to the system.

  • Harmonie prod will continue from the DTG given in your progress.log file. The rest of the arguments is as for Harmonie start. This should be used to continue and experiment. It is assumed that a first guess file is available and the run will fail if this is not found.

  • Harmonie mon will restart your ecflow_ui window and try to connect to an existing ecflow server.

  • Harmonie co [FILE|PATH/FILE] will copy the request file from the version chosen in your setup ( as pointed out in the config-sh/hm_rev file ) to your local directory. If the PATH is not given a search will be done. If the name matches several files you will be given a list to choose from.

  • Harmonie install will build your libraries and binaries but not start any experiment

  • Harmonie testbed will launch the Harmonie testbed

  • Harmonie diff [--xxdiff] will look for differences between the revision in config-sh/hm_rev and HM_LIB.

  • Harmonie CleanUp -ALL -go will clean the following directories: HM_DATA, HM_LIB, HM_EXP. Instructions from src/Actions.pl:

# args: if -go: remove, (default is to list but not remove the matching files)
+#       if -k*: do not do the long term archive HM_EXP - so keep it
+#       if -d*: combination of -k and -ALL (-d* means: disks)
+#       if -ALL: treat all files and also (if -go) remove the directories
+#       a pattern is usually a string without meta-characters. To this
+#       a * is appended (so e.g. ob will affect all files ob*); this can
+#       be inhibited by appending ~ (so ob~! translates to ob).
+#       Also, files in all subdirectories P*_* will be affected
+#       where P is the pattern [0-9][0-9], This resembles
+#       a `CYCLEDIR'. So ob will result in 'ob* P*_*/ob*'.
+#       The pattern P*_* will be prepended to every / in the pattern,
+#       unless the / is preceded by ~ (which will be removed).
+#       Hence, to remove e.g. all analyses from 1995, use 1995/an,
+#       which translates to 1995[0-9][0-9]*_*/an*
+#       (to be precise: use: CleanUp("REMOVE:1995/an", "-go");
diff --git a/previews/PR1153/System/UpdateNamelists/index.html b/previews/PR1153/System/UpdateNamelists/index.html new file mode 100644 index 0000000000..88ac240f37 --- /dev/null +++ b/previews/PR1153/System/UpdateNamelists/index.html @@ -0,0 +1,14 @@ + +Update Namelist · Harmonie wiki
GitHub

Update the namelist hashes

Introduction

Each namelists is build from a perl dictionary of different settings, nam/harmonie_namelists.pm as the deviation from the default setup. One section takes care of the general file settings, one of the mpp options and the large ones of different configurations. The script nam/gen_namelists.pl allows us to build new namelists adding the settings on top of each other. In the following we describe how to add new namelists and include them in the suite.

Create a new hash module

Let us assume we have some new 4DVAR namelists we would like to merge. Create a directory, 4dvar, and put your new namelists in here. Run the script nam/Create_hashes.pl

./Create_hashes.pl 4dvar
+Create namelist hash for 4dvar 
+Scan 4dvar/namscreen_dat_4d 
+Scan 4dvar/namtraj_1_4d 
+Scan 4dvar/namvar_dat_4d 
+Create namelist hash 4dvar.pm 
+Create updated empty namelist hash empty_4dvar.pm for 4dvar

We have now created a perl module for the new namelists. One with empty namelist entries, 4dvar_empty.pm, and one with all namelists in the right format, 4dvar.pm. To get one of your namelists back ( sorted ) you can write:

./gen_namlist.pl -n 4dvar_empty.pm -n 4dvar.pm namscreen_dat_4d

To get the module integrated in the system the module has to be merged with the conventions in harmonie_namelists.pm, but as a start the full namelists can be used. Copy the new empty*.pm to empty.pm to get the updated list of empty namelists.

Create the new namelist

Add the new namelists to the script scr/Get_namelist. In this case we would add a new case for 4dvar

4dvartraj) 
+   NAMELIST_CONFIG="$DEFAULT minimization dynamics ${DYNAMICS} ${PHYSICS} ${PHYSICS}_minimization ${SURFACE} ${EXTRA_FORECAST_OPTIONS} varbc minim4d"
+    ;;
diff --git a/previews/PR1153/System/UsingSubmodulesinHarmonie/index.html b/previews/PR1153/System/UsingSubmodulesinHarmonie/index.html new file mode 100644 index 0000000000..4440f0b732 --- /dev/null +++ b/previews/PR1153/System/UsingSubmodulesinHarmonie/index.html @@ -0,0 +1,151 @@ + +GitHub workflow with submodules · Harmonie wiki
GitHub

How to use submodules in the HarmonieCSC repository

The information on this page is not relevant for CY46 yet, but is intended as pointer to upcoming changes in CY49 and might be useful when porting changes from CY46 to CY49

Introduction

Up to CY49 the Hirlam/Harmonie repository contained all scripts and code needed for Harmonie and then some. Since CY49 a new Hirlam/HarmonieCSC repository is used. The src directory has been externalized so it can follow the ACCORD IAL repository, simplifying code development within ACCORD. In addition to the src directory, several other components have been moved into separate repositories outside the Harmonie repository as well. To create a consistent set of scripts, code and tools, git submodules are used. Git submodules are essentially git repositories contained within the main repository, a.k.a. the superproject, with commit hashes of the submodules tied to a specific commit of the superproject. The Hirlam/HarmonieCSC superproject contains the following submodules:

Preparation

To be able to access github using ssh, add your public ssh key to https://github.com/settings/keys

For users of Harmonie (no development)

Clone the Harmonie superproject + the submodules contained therein from the Hirlam organization:

git clone --recurse-submodules git@github.com:Hirlam/HarmonieCSC.git

This will create a structure very similar to the original Harmonie repository and usage is as before.

If you forget the --recurse-submodules, you can use:

git submodule init

To initialise your submodules after cloning followed by a recursive pull described below.

Pull changes to your local repository

If a submodule has changed remotely, the reference in the superproject will also have changed and you can get the change with a pull. After pulling, you can update your submodules with:

git submodule update

This can be done with one command with:

git pull --recurse-submodules

This can be set to the default behaviour by setting:

git config --global submodule.recurse true

However, this will check out the commit set in the superproject in all your submodules, so if you are working on your own branch, you will have to check it out again afterwards manually. If you have uncommited changes in your branch, you will get an error and the checkout will be aborted.

To avoid this, you can use:

git submodule update path/to/submodule

to update a specific submodule.

For developers

Contributing code has become somewhat more complex, as the submodules and the superproject need to be treated separately. The steps that need to be taken are described below for 3 scenarios.

Creating user forks

To be able to create pull requests a user fork of the superproject is needed. This can be done via https://github.com/Hirlam/HarmonieCSC/fork. To contribute to one or more of the submodules, forks must be created for these as well in a similar fashion, e.g. from src via https://github.com/Hirlam/IAL/fork. User forks need to be kept up-to-date manually by the users themselves (see GitDeveloperDocumentation). Alternatively, you can clone the superproject from Hirlam and add your user fork as a second remote:

  • Clone the superproject + the submodules contained therein from the Hirlam organization, and move into it (Note that the remote will be called Hirlam, rather than origin):
    git clone -o Hirlam --recurse-submodules git@github.com:Hirlam/HarmonieCSC.git
+cd HarmonieCSC
  • Then add your user fork as new remote and update all remotes
    git remote add <YOUR_GITHUB_USERNAME> git@github.com:<YOUR_GITHUB_USERNAME>/HarmonieCSC
+git fetch --all
  • After making changes, push to your fork, not to Hirlam.

Scenario 1: Modify the superproject only

If only modifications to the superproject are needed, the workflow is very similar to before, as there is no need to update the submodules and their hashes.

Create a new feature or bugfix branch for the new development, e.g.:

git checkout -b <YOUR_BRANCH> [branch_to_branch_from]

This will create a new branch named <YOUR_BRANCH> based on the branch that was checked out, or from the branch specified as [branch_to_branch_from]. to create and check out the branch in a different location without copying the full repository, worktrees can be used, e.g.:

git worktree add -b <YOUR_BRANCH> ../some_new_dev [branch_to_branch_from]

Which will create new branch <YOUR_BRANCH> and check it out in ../some_new_dev

Make the changes as needed, then stage and commit them:

git add <changed_files>         # stage
+git commit -m "Useful message"  # and commit

Then push the changes in your branch to your fork:

git push -u <YOUR_GITHUB_USERNAME> <YOUR_BRANCH>

Once you are happy, create a pull request in github.

Scenario 2: Modify a submodule only

If only a change in the submodules is needed, first the change in the submodule needs to be made and merged, and then the submodule's hash in the superproject needs to be updated so that it points to the new commit. Basic steps are:

  • Make the desired changes to the submodule:
    • Clone your user fork
    • Go to the submodule directory and add your fork of the submodule as remote
    • Create a new branch for the submodule
    • Make and test your changes to the submodule
    • Commit the changes to the submodule
    • Push the submodule changes to your user fork of the submodule on github
    • Create a pull request for the submodule changes and wait until they are approved and merged in
  • Update the submodule's hash in the superproject:
    • Go to the superproject clone directory
    • Create a new branch
    • Update the submodule's hash and commit the change
    • Push the new branch to your user fork of the superproject
    • Create a pull request to update the submodule's hash

See next section for details from a real case.

Steps taken in a real case, modifying src/surfex/SURFEX/interpol_npts.F90

  • Clone your up-to-date fork

    > cd <SOMEPATH>
+> git clone --recurse-submodules git@github.com:<YOUR_GITHUB_USERNAME>/HarmonieCSC.git
+Cloning into 'HarmonieCSC'...
+remote: Enumerating objects: 25230, done.
+remote: Counting objects: 100% (277/277), done.
+remote: Compressing objects: 100% (154/154), done.
+remote: Total 25230 (delta 156), reused 198 (delta 120), pack-reused 24953
+Receiving objects: 100% (25230/25230), 8.28 MiB | 2.91 MiB/s, done.
+Resolving deltas: 100% (18952/18952), done.
+Updating files: 100% (1395/1395), done.
+Submodule 'const' (git@github.com:Hirlam/HarmonieConst) registered for path 'const'
+Submodule 'src' (git@github.com:Hirlam/IAL.git) registered for path 'src'
+Submodule 'util/auxlibs' (git@github.com:Hirlam/Auxlibs.git) registered for path 'util/auxlibs'
+Submodule 'util/gl' (git@github.com:Hirlam/GL.git) registered for path 'util/gl'
+Cloning into '<SOMEPATH>/HarmonieCSC/const'...
+remote: Enumerating objects: 535, done.        
+remote: Total 535 (delta 0), reused 0 (delta 0), pack-reused 535        
+Receiving objects: 100% (535/535), 158.98 MiB | 16.17 MiB/s, done.
+Resolving deltas: 100% (189/189), done.
+Cloning into '<SOMEPATH>/HarmonieCSC/src'...
+remote: Enumerating objects: 472517, done.        
+remote: Counting objects: 100% (7780/7780), done.        
+remote: Compressing objects: 100% (2433/2433), done.        
+remote: Total 472517 (delta 5550), reused 6930 (delta 5329), pack-reused 464737        
+Receiving objects: 100% (472517/472517), 560.70 MiB | 11.45 MiB/s, done.
+Resolving deltas: 100% (381932/381932), done.
+Cloning into '<SOMEPATH>/HarmonieCSC/util/auxlibs'...
+remote: Enumerating objects: 2880, done.        
+remote: Counting objects: 100% (2880/2880), done.        
+remote: Compressing objects: 100% (1102/1102), done.        
+remote: Total 2880 (delta 1614), reused 2880 (delta 1614), pack-reused 0        
+Receiving objects: 100% (2880/2880), 20.29 MiB | 12.55 MiB/s, done.
+Resolving deltas: 100% (1614/1614), done.
+Cloning into '<SOMEPATH>/HarmonieCSC/util/gl'...
+remote: Enumerating objects: 9414, done.        
+remote: Counting objects: 100% (9414/9414), done.        
+remote: Compressing objects: 100% (1839/1839), done.        
+remote: Total 9414 (delta 5595), reused 9408 (delta 5593), pack-reused 0        
+Receiving objects: 100% (9414/9414), 2.82 MiB | 4.56 MiB/s, done.
+Resolving deltas: 100% (5595/5595), done.
+Submodule path 'const': checked out '6ff54331ba1e9253ffde7a0c5a003f6258f78fff'
+Submodule path 'src': checked out '61847aa01cf880252d5bd35e57a417ed31d1cd08'
+Submodule path 'util/auxlibs': checked out '626140284a8ec8eef5974cc7fb38b7d08105ea91'
+Submodule path 'util/gl': checked out '9285e2fcdb76c5afb9444e227fb03a338b68ff6a'

  • all submodules in the user fork point to repositories in the Hirlam organisation, e.g.:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git remote -v
+origin	git@github.com:Hirlam/IAL.git (fetch)
+origin	git@github.com:Hirlam/IAL.git (push)

  • Add my fork of the IAL repository as remote, in the src directory, and fetch it:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git remote add <YOUR_GITHUB_USERNAME> git@github.com:<YOUR_GITHUB_USERNAME>/IAL.git
+> git fetch <YOUR_GITHUB_USERNAME>
+remote: Enumerating objects: 363, done.
+remote: Counting objects: 100% (340/340), done.
+remote: Compressing objects: 100% (77/77), done.
+remote: Total 363 (delta 266), reused 328 (delta 263), pack-reused 23
+Receiving objects: 100% (363/363), 315.12 KiB | 1.12 MiB/s, done.
+Resolving deltas: 100% (268/268), completed with 56 local objects.
+From github.com:<YOUR_GITHUB_USERNAME>/IAL
+ * [new branch]            accord_CY49T0_bf                       -> <YOUR_GITHUB_USERNAME>/accord_CY49T0_bf
+ * [new branch]            accord_CY49T0_to_T1                    -> <YOUR_GITHUB_USERNAME>/accord_CY49T0_to_T1
+ * [new branch]            feature/markdown_docs                  -> 
+ *   <YOUR_GITHUB_USERNAME>/feature/markdown_docs
+ * [new branch]            gco_CY46T1_bf                          -> <YOUR_GITHUB_USERNAME>/gco_CY46T1_bf
+ * [new branch]            gco_CY46T1_op1                         -> <YOUR_GITHUB_USERNAME>/gco_CY46T1_op1
+ * [new branch]            mary_CY48T1_preT2                      -> <YOUR_GITHUB_USERNAME>/mary_CY48T1_preT2
+ * [new branch]            master                                 -> <YOUR_GITHUB_USERNAME>/master
+ * [new tag]               CY49T0_T1rc.01                         -> CY49T0_T1rc.01
+ * [new tag]               CY49T0_bf.00                           -> CY49T0_bf.00
+ * [new tag]               CY49T0_bf.01                           -> CY49T0_bf.01
+ * [new tag]               CY49T0_bf.02                           -> CY49T0_bf.02
+ * [new tag]               CY49T0_op0.00                          -> CY49T0_op0.00
+ * [new tag]               CY49T0_to_T1.01                        -> CY49T0_to_T1.01
+ * [new tag]               CY49T0_to_T1.03                        -> CY49T0_to_T1.03
+ * [new tag]               CY49T0_to_T1.04                        -> CY49T0_to_T1.04
+ * [new tag]               CY49T0_to_T1.05                        -> CY49T0_to_T1.05
+ * [new tag]               CY49T0_to_T1.06                        -> CY49T0_to_T1.06
+ * [new tag]               CY49T0_to_T1.07                        -> CY49T0_to_T1.07
+ * [new tag]               CY49T0_to_T1.08                        -> CY49T0_to_T1.08
+ * [new tag]               CY49T0_to_T1.09                        -> CY49T0_to_T1.09
+ * [new tag]               CY49T1                                 -> CY49T1
+ * [new tag]               CY49T1_toT2.02                         -> CY49T1_toT2.02

  • Create a new branch in the src directory and check it out:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git checkout -b <YOUR_BRANCH>
+Switched to a new branch '<YOUR_BRANCH>'

  • Make your changes to the submodule (and test everything carefully of course):

  • git status will show modified files:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git status
+On branch <YOUR_BRANCH>
+Changes not staged for commit:
+  (use "git add <file>..." to update what will be committed)
+  (use "git restore <file>..." to discard changes in working directory)
+	modified:   surfex/SURFEX/interpol_npts.F90
+
+no changes added to commit (use "git add" and/or "git commit -a")

  • Stage and commit the changes, e.g.:

    > cd <SOMEPATH>/HarmonieCSC/src
+git add surfex/SURFEX/interpol_npts.F90
+git commit -m '<a good descriptive message>'

  • Push the submodule to your fork of the submodule's repository:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git push -u <YOUR_GITHUB_USERNAME> <YOUR_BRANCH>
+Enumerating objects: 442, done.
+Counting objects: 100% (374/374), done.
+Delta compression using up to 256 threads
+Compressing objects: 100% (123/123), done.
+Writing objects: 100% (227/227), 84.20 KiB | 1.24 MiB/s, done.
+Total 227 (delta 183), reused 144 (delta 103), pack-reused 0
+remote: Resolving deltas: 100% (183/183), completed with 120 local objects.
+remote: 
+remote: Create a pull request for '<YOUR_BRANCH>' on GitHub by visiting:
+remote:      https://github.com/<YOUR_GITHUB_USERNAME>/IAL/pull/new/<>
+remote: 
+To github.com:<YOUR_GITHUB_USERNAME>/IAL.git
+ * [new branch]            <YOUR_BRANCH> -> <YOUR_BRANCH>
+Branch '<YOUR_BRANCH>' set up to track remote branch '<YOUR_BRANCH>' from 
+'<YOUR_GITHUB_USERNAME>'.

  • Go to github and create a pull request for the submodule. Make sure the correct base repository and branch are used in the PR!

  • After the PR for the submodule has been merged in, the hash of the submodule in the superproject needs to be updated

  • Get the latest changes of the submodule into your local copy and check out the newest commit:

    > cd <SOMEPATH>/HarmonieCSC/src
+> git fetch origin
+remote: Enumerating objects: 1, done.
+remote: Counting objects: 100% (1/1), done.
+remote: Total 1 (delta 0), reused 1 (delta 0), pack-reused 0
+Unpacking objects: 100% (1/1), 904 bytes | 14.00 KiB/s, done.
+From github.com:Hirlam/IAL
+   61847aa01c..f8d3d93767  dev-CY49T2h -> origin/dev-CY49T2h
+> git checkout origin
+Previous HEAD position was 61847aa01c Updates for CMake compilation of CY49T2h (Hirlam/IAL#7)
+HEAD is now at f8d3d93767 Fix a FPE (NaN) in PGD, instead of ZDIST, use X, which is ZDIST passed to internal 
+submodule ORDERI (#10)

Ensure that this is indeed the commit of the submodule you want to use in the superproject.

  • Go to the superproject's directory and create and check out a new branch:
    > cd <SOMEPATH>/HarmonieCSC
+> git checkout -b <YOUR_BRANCH>
+Switched to a new branch '<YOUR_BRANCH>'
  • Update the submodule's hash, src in the example, and commit the change:
    > cd <SOMEPATH>/HarmonieCSC
+> git add src
+> git commit -m '<another good log message>'
  • Push the new branch to your user fork (remote: origin) of the superproject:
    > git push -u origin <YOUR_BRANCH>
+Enumerating objects: 3, done.
+Counting objects: 100% (3/3), done.
+Delta compression using up to 256 threads
+Compressing objects: 100% (2/2), done.
+Writing objects: 100% (2/2), 297 bytes | 148.00 KiB/s, done.
+Total 2 (delta 1), reused 0 (delta 0), pack-reused 0
+remote: Resolving deltas: 100% (1/1), completed with 1 local object.
+remote: 
+remote: Create a pull request for '<YOUR_BRANCH>' on GitHub by visiting:
+remote:      https://github.com/<YOUR_GITHUB_USERNAME>/HarmonieCSC/pull/new/<YOUR_BRANCH>
+remote: 
+To github.com:<YOUR_GITHUB_USERNAME>/HarmonieCSC.git
+ * [new branch]        <YOUR_BRANCH> -> <YOUR_BRANCH>
+Branch '<YOUR_BRANCH>' set up to track remote branch '<YOUR_BRANCH>' from 'origin'.
  • Finally create a pull request to update the submodule's hash, as suggested by git above. Once this PR has been approved and merged in, you're done!

Scenario 3: Changes in superproject and a submodule

If changes are needed in both the superproject (e.g. namelist) and submodules (e.g. new namelist variable) the steps are very similar to the scenario in which only a submodule needs to be modified. In the step where the submodule's hash is updated in the superproject, additional commits to the superproject's own files can be pushed and included in the same pull request.

For developers++

This section describes some git submodule actions that regular users probably never need to worry about.

Merge from dev-CY46h1 into dev-CY49T2h

ToDo

Adding a submodule

To add a new submodule to the superproject, got to the cloned superproject's directory, create a new branch and then add the submodule:

git submodule add <submodule_url> [<new_submodule_path>]

The path to the submodule and updated .gitmodules file will be staged automatically, e.g.:

> git status
+On branch main
+Your branch is up to date with 'origin/main'.
+
+Changes to be committed:
+  (use "git restore --staged <file>..." to unstage)
+        new file:   .gitmodules
+        new file:   <new_submodule_path>

Then simply commit (git commit) and push (git push).

More info

  • https://git-scm.com/book/en/Git-Tools-Submodules
  • https://www.atlassian.com/git/tutorials/git-submodule
diff --git a/previews/PR1153/Verification/AllobsVerification/index.html b/previews/PR1153/Verification/AllobsVerification/index.html new file mode 100644 index 0000000000..5f8dcef690 --- /dev/null +++ b/previews/PR1153/Verification/AllobsVerification/index.html @@ -0,0 +1,8 @@ + +allobs Verification · Harmonie wiki
GitHub

allobs Verification

Introduction

It is possible to use Screening (NCONF=002) to calculate observation - forecast (O-F) statistics using forecasts of any length as the model first-guess. The ...

Screening adjustments

The screening of observations is switched off by adjusting the NAMCT0 and L_SCREEN_CALL

&NAMCT0
+  L_SCREEN_CALL=.FALSE.,
+/

Inputs

The inputs for the allobs data extraction are the same as for a regular DA Screening task - observations (ECMA) and a first-guess (short-forecast files - ICMSHHARM+hhhh and ICMSHHARM+hhhh.sfx).

Note

The forecasts being verified will need both model state (ICMSHHARM+hhhh) and the "full" SURFEX file (ICMSHHARM+hhhh.sfx) available for the Scextr task. You may need to adjust the VERITIMES and SWRITUPTIMES settings in your ecf/config_exp.h file.

The following settings are important:

config_exp.h setting
SCREXTRUse Screening (NCONF=002) to produce O-F data
SCREXTR_TASKSNumber of parallel tasks for O-F extraction
FGREFEXPExperiment name for FirstGuess. If set to undef it will use own forecasts
OBREFEXPExperiment name for ODBs. If set to undef it will use own ODBs

Running

This extraction can be executed as part of a running experiment (with SCREXTER=yes) or using a standalone suite (PLAYFILE=allobsver).

Output

The output from the Scrextr task is a CCMA ODB with O-F statistics. This ODB is archived in $HM_DATA/archive/extract/obsver/odb_ver_${FGDTG}_${FCLENSTR}/ where FGDTG is the forecast cycle DTG and FCLENSTR is the forecast length verified. The ODB data is then converted to ODB-2 and sqlite files for use in Harp and other downstream applications using odbcon tools.

diff --git a/previews/PR1153/Verification/CommonVerification/index.html b/previews/PR1153/Verification/CommonVerification/index.html new file mode 100644 index 0000000000..9fd0792a95 --- /dev/null +++ b/previews/PR1153/Verification/CommonVerification/index.html @@ -0,0 +1,6 @@ + +- · Harmonie wiki
GitHub
diff --git a/previews/PR1153/Verification/Extract4verification/index.html b/previews/PR1153/Verification/Extract4verification/index.html new file mode 100644 index 0000000000..dac6a11761 --- /dev/null +++ b/previews/PR1153/Verification/Extract4verification/index.html @@ -0,0 +1,33 @@ + +Extract4verification · Harmonie wiki
GitHub

Verification preparation

Introduction

Before we can run the verification we need to extract data for each geographical point and produce files in a format that the verification program can use. In HARMONIE there are two programs, one fore extracting model data (fldextr_grib_api) and one for observations ( obsextr ). Both are part of the util/gl_grib_api.

fldextr is capable of extracting data from several sources (HARMONIE/HIRLAM/IFS and produces so called vfld-files in ASCII format. The main tasks of the program is to:

  • Recalculates rh,td to be over water
  • Interpolates to geographical points according to a synop.list and temp.list
  • Does MSLP,RH2M,TD2M calculations if the are not available in the input file
  • Optional fraction of land check.
  • Interpolates to pressure levels for TEMP data.

obsextr extracts conventional observations from BUFR data and creates a vobs file similar to the vfld file. It:

  • Reads SYNOP and TEMP
  • LUSE_LIST controls the usage of a station list

Station lists used by verification

src/Fldextr links synop.list to $HM_LIB/util/gl_grib_api/scr/allsynop.list and temp.list to $HM_LIB/util/gl_grib_api/scr/alltemp.list. These station lists are based on information in WMO's ''Publication No. 9, Volume A, Observing Stations and WMO Catalogue of Radiosondes. This is regularly updated by the WMO. allsynop.list and alltemp.list are updated less frequently. There is also scope to include local stations in these lists that are not included in WMO'sPublication No. 9''. The following 7-digit station identifiers are available to HIRLAM countries:

Countryidentifier
Norway1000000 - 1099999
Sweden2000000 - 2099999
Estonia2600000 - 2649999
Lithuania2650000 - 2699999
Finland2700000 - 2799999
Ireland3900000 - 3900000
Iceland4000000 - 4099999
Greenland4200000 - 4299999
Denmark6000000 - 6999999
Netherlands6200000 - 6299999
Spain8000000 - 8099999

Field extraction

scr/Fldextr This script goes through all forecast files and collects all the variables (T2m, V10m, mean sea level pressure, RH2m, Q2m, total cloudiness, precipitation + profiles) needed in basic verification.

  • Input parameters: none.
  • Data: Forecast files.
  • Namelists: Station lists for surface data (ewglam.list) and radiosounding data (temp.list).
  • Executables: fldextr.
  • Output: Field extraction files (vfld${EXP}${DTG}), which are placed in EXTRARCH.

Extract observations

scr/FetchOBS scripts takes care of the observation extraction for verification. First, the observation BUFR-file is fetched from the MARS (ExtractVEROBSfromMARS), then all the needed data is extracted from the BUFR-files.

  • Input parameters: none.
  • Data: Station lists for surface data (ewglam.list) and radiosounding data (temp.list). These shoud be found from SCRDIR
  • Executables: mars, obsextr.
  • Output: Field extraction files (vobs*), which are placed in EXTRARCH.

A general input format

The file format for verification is a simple ascii file with a header that allows an arbitrary number of different types of point data to be included in the model vfld- or observation vobs- files.

The generalized input format is defined as 

nstation_synop nstation_temp version_flag  # written in fortran format '(1x,3I6)' )
+# where version_flag == 4
+# If ( nstation_synop > 0 ) we read the variables in the file, their descriptors and
+# their accumulation time
+#
+nvar_synop
+DESC_1 ACC_TIME_1
+...
+DESC_nvar_synop ACC_TIME_nvar_synop
+# Station information and data N=nstation_synop times
+stid_1 lat lon hgt val(1:nvar_synop)
+...
+stid_N lat lon hgt val(1:nvar_synop)
+
+# If ( nstation_temp > 0 )
+nlev_temp
+nvar_temp
+DESC_1 ACC_TIME_1
+..
+DESC_nvar_temp ACC_TIME_nvar_temp
+# Station information and data nstation_temp times
+# and station data nlev_temp times for each station
+stid_1 lat lon hgt
+pressure(1) val(1:nvar_temp)
+...
+pressure(nlev_temp) val(1:nvar_temp)
+stid_2 lat lon hgt
+...

The accumulation time allows us to e.g. easily include different precipitation accumulation intervals.

diff --git a/previews/PR1153/Verification/HARP/index.html b/previews/PR1153/Verification/HARP/index.html new file mode 100644 index 0000000000..7ed345aa02 --- /dev/null +++ b/previews/PR1153/Verification/HARP/index.html @@ -0,0 +1,6 @@ + +HARP · Harmonie wiki
GitHub

harp

harp is a set of R packages for manipulation, analysis, visualization and verification of data from regular grids. The most up to date information and tutorials can be found on the website for the 2024 training course

diff --git a/previews/PR1153/Verification/Obsmon/index.html b/previews/PR1153/Verification/Obsmon/index.html new file mode 100644 index 0000000000..4077d70144 --- /dev/null +++ b/previews/PR1153/Verification/Obsmon/index.html @@ -0,0 +1,9 @@ + +Obsmon · Harmonie wiki
GitHub

OBSMON

In 2014 a new version of the observational monitoring system entered trunk. The first official release containing obsmon was cy38h1.2

The obsmon package consists of two components. The first is a fortran-based code that is run, for all the active observations types (defined in scr/include.ass), at the post-processing stage of an experiment. It generates statistics from the ODB and store data in three SQLite tables (ECMA/CCMA/ECMA_SFC(CANARI)). In addition the SQLite tables are concatenated in tables in the /ts directory at the end of the run.

The second component is written in R using the Shiny web application framework. It allows the interactive visualization of the data contained in the SQLite tables produced by the first component of the package. This can be done either offline or via a server daemon (e.g. shiny.hirlam.org).

For disambiguation, we will hereinafter use the terms "backend" and "frontend" to refer to the first and second components of obsmon, respectively.

How to turn on backend obsmon?

Obsmon is enabled by default in ecf/config_exp.h vi OBSMONITOR=obstat

Note

If you don't have any log-files from the monitoring experiment, you should disable plotlog from the OBSMONITOR= string in ecf/config_exp.h

Note

Make sure that the -DODBMONITOR pre-processor flag is active during compilation of util/monitor. This should only be an issue on untested platforms and is by default enabled on ECMWF.

How to create statistics and SQLite tables offline/stand-alone:

If you are running a normal harmonie experiment with the OBSMONITOR=obstat active, the following step is not relevant.

Two new actions are implemented in the Harmonie script. Instead of start you can write obsmon and instead of prod you can write obsmonprod. This will use the correct definition file and only do post-processing. If you have your ODB files in another experiment you can add the variable OBSMON_EXP_ARCHIVE_ROOT to point to the archive directory in the experiment you are monitoring. This approach is used in the operational MetCoOp runs. If you set OBSMON_EXP=label the runs will be stored in $EXTRARCH/label/. This way you can use the same experiment to monitor all other experiments. The experiements do not need to belong to you as long as you have reading permissions to the experiment. 

1. as start:
+${HM_REV}/config-sh/Harmonie obsmon DTG=YYYYMMDDHH DTGEND=YYYYMMDDHH OBSMON_EXP_ARCHIVE_ROOT=PATH-TO-ARCHIVE-DIRECTORY-TO-MONITOR OBSMON_EXP=MY-LABEL
2. as prod:
+${HM_REV}/config-sh/Harmonie obsmonprod DTGEND=YYYYMMDDHH OBSMON_EXP_ARCHIVE_ROOT=PATH-TO-ARCHIVE-DIRECTORY-TO-MONITOR OBSMON_EXP=MY-LABEL

If you want to monitor an experiment stored on ECFS, you should specify OBSMON_EXP_ARCHIVE_ROOT with the full address (ectmp:/$USER/..... or ec:/$USER/...) e.g. 

OBSMON_EXP_ARCHIVE_ROOT=ectmp:/$USER/harmonie/MY-EXP OBSMON_EXP=MY-LABEL

You can also monitor other users experiments as long as you have read-access to the data.

How to visualize the SQLite tables using frontend obsmon:

Download the code from its git repo at github:

git clone git@github.com:Hirlam/obsmon.git

Instructions on how to install, configure and run the code can be found in the file docs/obsmon_documentation.pdf that is shipped with the code.

How to extend backend obsmon with new observation types

Step 1: Extract statistics from ODB

In the scripts you must enable monitoring of your observation type. Each observation type is monitored if active in:

msms/harmonie.tdf

The script which calls the obsmon binary, is:

scr/obsmon_stat

This script set the correct namelist based on how you define your observation below.

After the information is extracted, the different SQLite bases are gathered into one big SQLite file in the script:

scr/obsmon_link_stat

The observation types which the above script is gathering is defined in obtypes in this script:

util/monitor/scr/monitor.inc

Then let us introduce the new observation in the obsmon binary. The source code is in 

harmonie/util/monitor

There are two modules controlling the extraction from ODB:

mod/module_obstypes.f90
+mod/module_obsmon.F90

The first routine defines and initializes the observation type you want to monitor. The second calls the intialization defined in the first file. The important steps are to introduce namelist variables and a meaningful definition in the initialization of the observation type.

The real extraction from ODB is done in

cmastat/odb_extract.f90

At the moment there are two different SQL files used, one for conventional and one for satelites. E.g. radar is handled as TEMP/AIRCRAFT.

Step 2: Visualize the new observation in shiny (frontend obsmon)

The logics of which observation type to display is defined in:

src/observation_definitions.R

In case of a new plot added, the plotting is defined in the files under:

src/plots
diff --git a/previews/PR1153/Verification/Verification/index.html b/previews/PR1153/Verification/Verification/index.html new file mode 100644 index 0000000000..58a16cdfda --- /dev/null +++ b/previews/PR1153/Verification/Verification/index.html @@ -0,0 +1,6 @@ + +Verification · Harmonie wiki
GitHub
diff --git a/previews/PR1153/Visualization/EPyGrAM/index.html b/previews/PR1153/Visualization/EPyGrAM/index.html new file mode 100644 index 0000000000..e23d6aa9a5 --- /dev/null +++ b/previews/PR1153/Visualization/EPyGrAM/index.html @@ -0,0 +1,9 @@ + +EpyGram · Harmonie wiki
GitHub
diff --git a/previews/PR1153/assets/CloudIngest_scheme.png b/previews/PR1153/assets/CloudIngest_scheme.png new file mode 100644 index 0000000000..674984eff3 Binary files /dev/null and b/previews/PR1153/assets/CloudIngest_scheme.png differ diff --git a/previews/PR1153/assets/README/index.html b/previews/PR1153/assets/README/index.html new file mode 100644 index 0000000000..1f0c91d3c1 --- /dev/null +++ b/previews/PR1153/assets/README/index.html @@ -0,0 +1,6 @@ + +- · Harmonie wiki
GitHub

da_graph.svg is created in .github/workflows/documentation.yml. It can be recreated locally by using dot which is part of graphviz

sudo apt install graphviz
dot -Tsvg da_graph.dot -o da_graph.svg
diff --git a/previews/PR1153/assets/cie_domain.png b/previews/PR1153/assets/cie_domain.png new file mode 100644 index 0000000000..b08572ca92 Binary files /dev/null and b/previews/PR1153/assets/cie_domain.png differ diff --git a/previews/PR1153/assets/cloudingest.dot b/previews/PR1153/assets/cloudingest.dot new file mode 100644 index 0000000000..e67c61dd16 --- /dev/null +++ b/previews/PR1153/assets/cloudingest.dot @@ -0,0 +1,42 @@ +digraph cloudingest { + +// files +node[shape="note",fillcolor="#ff99ff",style=filled] +A[label="$WRK/first_guess"] +C[label="$WRK/first_guess_gridpp_grib"] +E[label= "$ARCHIVE/FirstGuess4Gridpp_cloud_base.nc"] +F[label="$OBDIR/obYYYYMMDDHH"] +H[label="$ARCHIVE/obYYYYMMDDHH"] +J[label= "$ARCHIVE/qc_obs_cloud_base.json"] +L[label= "$ARCHIVE/an_cloud_base.nc"] +Q[label= "MXMIN1999+0000 ($WRK/fc_start)"] +O[label="$OBDIR/MSGcloudYYYYMMDDHH.grib"] +N[label="$WRK/fc_start"] + +// tasks +node[shape="rectangle",fillcolor="yellow",style=filled] +B[label="FirstguessFA2grib"] +D[label="FirstGuessCB"] +G[label="Bufr2json"] +I[label="Qualitycontrol"] +K[label="OptimalInterpolation"] +M[label="MSG_combine"] +P[label="Minim"] + +// edges +A -> B -> C +C -> D -> E +F -> G -> H +H -> I -> J + +J -> K +E -> K +K -> L + +L -> M +P -> Q -> M +O -> M +M -> N + + +} diff --git a/previews/PR1153/assets/cloudingest.svg b/previews/PR1153/assets/cloudingest.svg new file mode 100644 index 0000000000..cf9d469703 --- /dev/null +++ b/previews/PR1153/assets/cloudingest.svg @@ -0,0 +1,231 @@ + + + + + + +cloudingest + + + +A + + + +$WRK/first_guess + + + +B + +FirstguessFA2grib + + + +A->B + + + + + +C + + + +$WRK/first_guess_gridpp_grib + + + +D + +FirstGuessCB + + + +C->D + + + + + +E + + + +$ARCHIVE/FirstGuess4Gridpp_cloud_base.nc + + + +K + +OptimalInterpolation + + + +E->K + + + + + +F + + + +$OBDIR/obYYYYMMDDHH + + + +G + +Bufr2json + + + +F->G + + + + + +H + + + +$ARCHIVE/obYYYYMMDDHH + + + +I + +Qualitycontrol + + + +H->I + + + + + +J + + + +$ARCHIVE/qc_obs_cloud_base.json + + + +J->K + + + + + +L + + + +$ARCHIVE/an_cloud_base.nc + + + +M + +MSG_combine + + + +L->M + + + + + +Q + + + +MXMIN1999+0000 ($WRK/fc_start) + + + +Q->M + + + + + +O + + + +$OBDIR/MSGcloudYYYYMMDDHH.grib + + + +O->M + + + + + +N + + + +$WRK/fc_start + + + +B->C + + + + + +D->E + + + + + +G->H + + + + + +I->J + + + + + +K->L + + + + + +M->N + + + + + +P + +Minim + + + +P->Q + + + + + diff --git a/previews/PR1153/assets/da_graph.svg b/previews/PR1153/assets/da_graph.svg new file mode 100644 index 0000000000..5e40286e54 --- /dev/null +++ b/previews/PR1153/assets/da_graph.svg @@ -0,0 +1,506 @@ + + + + + + +Harmonie + + + +Prepare_ob + + +Prepare_ob + + + + + +obYYYYMMDD + + + +observations/ob$YYYYMMDD + + + +Prepare_ob->obYYYYMMDD + + + + + +Bator + + +Bator + + + + + +odb + + +odb + + + +Bator->odb + + + + + +odb_can_ori + + +odb_can_ori + + + +Bator->odb_can_ori + + + + + +Oulan + + +Oulan + + + + + +OBSOUL + + + +oulan/OBSOUL + + + +Oulan->OBSOUL + + + + + +FirstGuess + +FirstGuess + + + +first_guess + + + +first_guess + + + +FirstGuess->first_guess + + + + + +first_guess_sfx + + + +first_guess_sfx + + + +FirstGuess->first_guess_sfx + + + + + +Fetch_assim_data + +Fetch_assim_data + + + +VarBC_very_fg + + + + +VarBC.cycle + + + + + +Fetch_assim_data->VarBC_very_fg + + + + + +stabal96 + + + + +stabal96.{cv,bal} + + + + + +Fetch_assim_data->stabal96 + + + + + +Canari + + +Canari + + + + + +ICMSHANALp0000sfx + + + + +ICMSHANAL+0000.sfx + + + + + +Canari->ICMSHANALp0000sfx + + + + + +odb_can_merge + + +odb_can_merge + + + +Canari->odb_can_merge + + + + + +odb_can + + +odb_can + + + +Canari->odb_can + + + + + +Screening + + +Screening + + + + + +odb_ccma + + +odb_ccma + + + +Screening->odb_ccma + + + + + +odbvar + + +odbvar + + + +Screening->odbvar + + + + + +VarBC_fg + + + + +VarBC.cycle + + + + + +Screening->VarBC_fg + + + + + +Minim + + +Minim + + + + + +MXMIN1999p0000 + + + + +MXMIN1999+0000 + + + + + +Minim->MXMIN1999p0000 + + + + + +VarBC_an + + + + +VarBC.cycle + + + + + +Minim->VarBC_an + + + + + +Forecast + + +Forecast + + + + + +fc_start + + + +fc_start + + + +MXMIN1999p0000->fc_start + + +Minim + + + +fc_start_sfx + + + +fc_start_sfx + + + +ICMSHANALp0000sfx->fc_start_sfx + + +Canari + + + +obYYYYMMDD->Bator + + + + + +obYYYYMMDD->Oulan + + + + + +OBSOUL->Bator + + + + + +odb->Screening + + + + + +odb_ccma->Minim + + + + + +odb_can_ori->Canari + + + + + +fc_start->Forecast + + + + + +first_guess->Canari + + + + + +first_guess->Screening + + + + + +first_guess->Minim + + + + + +first_guess_sfx->Canari + + + + + +fc_start_sfx->Forecast + + + + + +VarBC_very_fg->Screening + + + + + +VarBC_fg->Minim + + + + + +stabal96->Minim + + + + + +ECMWF_CANARI_SST_SIC + + + +ECMWF_CANARI_SST_SIC + + + +ECMWF_CANARI_SST_SIC->Canari + + + + + +LISTE_NOIRE_DIAP + + + + +LISTE_NOIRE_DIAP + + + + + +LISTE_NOIRE_DIAP->Bator + + + + + +LISTE_LOC + + + + +LISTE_LOC + + + + + +LISTE_LOC->Bator + + + + + +param_batorcfg + + + +param_batorcfg + + + +param_batorcfg->Bator + + + + + diff --git a/previews/PR1153/assets/documenter.js b/previews/PR1153/assets/documenter.js new file mode 100644 index 0000000000..b2bdd43eeb --- /dev/null +++ b/previews/PR1153/assets/documenter.js @@ -0,0 +1,1059 @@ +// Generated by Documenter.jl +requirejs.config({ + paths: { + 'highlight-julia': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/julia.min', + 'headroom': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.12.0/headroom.min', + 'jqueryui': 'https://cdnjs.cloudflare.com/ajax/libs/jqueryui/1.13.2/jquery-ui.min', + 'katex-auto-render': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/contrib/auto-render.min', + 'jquery': 'https://cdnjs.cloudflare.com/ajax/libs/jquery/3.7.0/jquery.min', + 'headroom-jquery': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.12.0/jQuery.headroom.min', + 'katex': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min', + 'highlight': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min', + 'highlight-julia-repl': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/julia-repl.min', + }, + shim: { + "highlight-julia": { + "deps": [ + "highlight" + ] + }, + "katex-auto-render": { + "deps": [ + "katex" + ] + }, + "headroom-jquery": { + "deps": [ + "jquery", + "headroom" + ] + }, + "highlight-julia-repl": { + "deps": [ + "highlight" + ] + } +} +}); +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'katex', 'katex-auto-render'], function($, katex, renderMathInElement) { +$(document).ready(function() { + renderMathInElement( + document.body, + { + "delimiters": [ + { + "left": "$", + "right": "$", + "display": false + }, + { + "left": "$$", + "right": "$$", + "display": true + }, + { + "left": "\\[", + "right": "\\]", + "display": true + } + ] +} + + ); +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'highlight', 'highlight-julia', 'highlight-julia-repl'], function($) { +$(document).ready(function() { + hljs.highlightAll(); +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +let timer = 0; +var isExpanded = true; + +$(document).on("click", ".docstring header", function () { + let articleToggleTitle = "Expand docstring"; + + debounce(() => { + if ($(this).siblings("section").is(":visible")) { + $(this) + .find(".docstring-article-toggle-button") + .removeClass("fa-chevron-down") + .addClass("fa-chevron-right"); + } else { + $(this) + .find(".docstring-article-toggle-button") + .removeClass("fa-chevron-right") + .addClass("fa-chevron-down"); + + articleToggleTitle = "Collapse docstring"; + } + + $(this) + .find(".docstring-article-toggle-button") + .prop("title", articleToggleTitle); + $(this).siblings("section").slideToggle(); + }); +}); + +$(document).on("click", ".docs-article-toggle-button", function (event) { + let articleToggleTitle = "Expand docstring"; + let navArticleToggleTitle = "Expand all docstrings"; + let animationSpeed = event.noToggleAnimation ? 0 : 400; + + debounce(() => { + if (isExpanded) { + $(this).removeClass("fa-chevron-up").addClass("fa-chevron-down"); + $(".docstring-article-toggle-button") + .removeClass("fa-chevron-down") + .addClass("fa-chevron-right"); + + isExpanded = false; + + $(".docstring section").slideUp(animationSpeed); + } else { + $(this).removeClass("fa-chevron-down").addClass("fa-chevron-up"); + $(".docstring-article-toggle-button") + .removeClass("fa-chevron-right") + .addClass("fa-chevron-down"); + + isExpanded = true; + articleToggleTitle = "Collapse docstring"; + navArticleToggleTitle = "Collapse all docstrings"; + + $(".docstring section").slideDown(animationSpeed); + } + + $(this).prop("title", navArticleToggleTitle); + $(".docstring-article-toggle-button").prop("title", articleToggleTitle); + }); +}); + +function debounce(callback, timeout = 300) { + if (Date.now() - timer > timeout) { + callback(); + } + + clearTimeout(timer); + + timer = Date.now(); +} + +}) +//////////////////////////////////////////////////////////////////////////////// +require([], function() { +function addCopyButtonCallbacks() { + for (const el of document.getElementsByTagName("pre")) { + const button = document.createElement("button"); + button.classList.add("copy-button", "fa-solid", "fa-copy"); + button.setAttribute("aria-label", "Copy this code block"); + button.setAttribute("title", "Copy"); + + el.appendChild(button); + + const success = function () { + button.classList.add("success", "fa-check"); + button.classList.remove("fa-copy"); + }; + + const failure = function () { + button.classList.add("error", "fa-xmark"); + button.classList.remove("fa-copy"); + }; + + button.addEventListener("click", function () { + copyToClipboard(el.innerText).then(success, failure); + + setTimeout(function () { + button.classList.add("fa-copy"); + button.classList.remove("success", "fa-check", "fa-xmark"); + }, 5000); + }); + } +} + +function copyToClipboard(text) { + // clipboard API is only available in secure contexts + if (window.navigator && window.navigator.clipboard) { + return window.navigator.clipboard.writeText(text); + } else { + return new Promise(function (resolve, reject) { + try { + const el = document.createElement("textarea"); + el.textContent = text; + el.style.position = "fixed"; + el.style.opacity = 0; + document.body.appendChild(el); + el.select(); + document.execCommand("copy"); + + resolve(); + } catch (err) { + reject(err); + } finally { + document.body.removeChild(el); + } + }); + } +} + +if (document.readyState === "loading") { + document.addEventListener("DOMContentLoaded", addCopyButtonCallbacks); +} else { + addCopyButtonCallbacks(); +} + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'headroom', 'headroom-jquery'], function($, Headroom) { + +// Manages the top navigation bar (hides it when the user starts scrolling down on the +// mobile). +window.Headroom = Headroom; // work around buggy module loading? +$(document).ready(function () { + $("#documenter .docs-navbar").headroom({ + tolerance: { up: 10, down: 10 }, + }); +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +$(document).ready(function () { + let meta = $("div[data-docstringscollapsed]").data(); + + if (meta?.docstringscollapsed) { + $("#documenter-article-toggle-button").trigger({ + type: "click", + noToggleAnimation: true, + }); + } +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +/* +To get an in-depth about the thought process you can refer: https://hetarth02.hashnode.dev/series/gsoc + +PSEUDOCODE: + +Searching happens automatically as the user types or adjusts the selected filters. +To preserve responsiveness, as much as possible of the slow parts of the search are done +in a web worker. Searching and result generation are done in the worker, and filtering and +DOM updates are done in the main thread. The filters are in the main thread as they should +be very quick to apply. This lets filters be changed without re-searching with minisearch +(which is possible even if filtering is on the worker thread) and also lets filters be +changed _while_ the worker is searching and without message passing (neither of which are +possible if filtering is on the worker thread) + +SEARCH WORKER: + +Import minisearch + +Build index + +On message from main thread + run search + find the first 200 unique results from each category, and compute their divs for display + note that this is necessary and sufficient information for the main thread to find the + first 200 unique results from any given filter set + post results to main thread + +MAIN: + +Launch worker + +Declare nonconstant globals (worker_is_running, last_search_text, unfiltered_results) + +On text update + if worker is not running, launch_search() + +launch_search + set worker_is_running to true, set last_search_text to the search text + post the search query to worker + +on message from worker + if last_search_text is not the same as the text in the search field, + the latest search result is not reflective of the latest search query, so update again + launch_search() + otherwise + set worker_is_running to false + + regardless, display the new search results to the user + save the unfiltered_results as a global + update_search() + +on filter click + adjust the filter selection + update_search() + +update_search + apply search filters by looping through the unfiltered_results and finding the first 200 + unique results that match the filters + + Update the DOM +*/ + +/////// SEARCH WORKER /////// + +function worker_function(documenterSearchIndex, documenterBaseURL, filters) { + importScripts( + "https://cdn.jsdelivr.net/npm/minisearch@6.1.0/dist/umd/index.min.js" + ); + + let data = documenterSearchIndex.map((x, key) => { + x["id"] = key; // minisearch requires a unique for each object + return x; + }); + + // list below is the lunr 2.1.3 list minus the intersect with names(Base) + // (all, any, get, in, is, only, which) and (do, else, for, let, where, while, with) + // ideally we'd just filter the original list but it's not available as a variable + const stopWords = new Set([ + "a", + "able", + "about", + "across", + "after", + "almost", + "also", + "am", + "among", + "an", + "and", + "are", + "as", + "at", + "be", + "because", + "been", + "but", + "by", + "can", + "cannot", + "could", + "dear", + "did", + "does", + "either", + "ever", + "every", + "from", + "got", + "had", + "has", + "have", + "he", + "her", + "hers", + "him", + "his", + "how", + "however", + "i", + "if", + "into", + "it", + "its", + "just", + "least", + "like", + "likely", + "may", + "me", + "might", + "most", + "must", + "my", + "neither", + "no", + "nor", + "not", + "of", + "off", + "often", + "on", + "or", + "other", + "our", + "own", + "rather", + "said", + "say", + "says", + "she", + "should", + "since", + "so", + "some", + "than", + "that", + "the", + "their", + "them", + "then", + "there", + "these", + "they", + "this", + "tis", + "to", + "too", + "twas", + "us", + "wants", + "was", + "we", + "were", + "what", + "when", + "who", + "whom", + "why", + "will", + "would", + "yet", + "you", + "your", + ]); + + let index = new MiniSearch({ + fields: ["title", "text"], // fields to index for full-text search + storeFields: ["location", "title", "text", "category", "page"], // fields to return with results + processTerm: (term) => { + let word = stopWords.has(term) ? null : term; + if (word) { + // custom trimmer that doesn't strip @ and !, which are used in julia macro and function names + word = word + .replace(/^[^a-zA-Z0-9@!]+/, "") + .replace(/[^a-zA-Z0-9@!]+$/, ""); + + word = word.toLowerCase(); + } + + return word ?? null; + }, + // add . as a separator, because otherwise "title": "Documenter.Anchors.add!", would not + // find anything if searching for "add!", only for the entire qualification + tokenize: (string) => string.split(/[\s\-\.]+/), + // options which will be applied during the search + searchOptions: { + prefix: true, + boost: { title: 100 }, + fuzzy: 2, + }, + }); + + index.addAll(data); + + /** + * Used to map characters to HTML entities. + * Refer: https://github.com/lodash/lodash/blob/main/src/escape.ts + */ + const htmlEscapes = { + "&": "&", + "<": "<", + ">": ">", + '"': """, + "'": "'", + }; + + /** + * Used to match HTML entities and HTML characters. + * Refer: https://github.com/lodash/lodash/blob/main/src/escape.ts + */ + const reUnescapedHtml = /[&<>"']/g; + const reHasUnescapedHtml = RegExp(reUnescapedHtml.source); + + /** + * Escape function from lodash + * Refer: https://github.com/lodash/lodash/blob/main/src/escape.ts + */ + function escape(string) { + return string && reHasUnescapedHtml.test(string) + ? string.replace(reUnescapedHtml, (chr) => htmlEscapes[chr]) + : string || ""; + } + + /** + * RegX escape function from MDN + * Refer: https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ + function escapeRegExp(string) { + return string.replace(/[.*+?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + } + + /** + * Make the result component given a minisearch result data object and the value + * of the search input as queryString. To view the result object structure, refer: + * https://lucaong.github.io/minisearch/modules/_minisearch_.html#searchresult + * + * @param {object} result + * @param {string} querystring + * @returns string + */ + function make_search_result(result, querystring) { + let search_divider = `
`; + let display_link = + result.location.slice(Math.max(0), Math.min(50, result.location.length)) + + (result.location.length > 30 ? "..." : ""); // To cut-off the link because it messes with the overflow of the whole div + + if (result.page !== "") { + display_link += ` (${result.page})`; + } + searchstring = escapeRegExp(querystring); + let textindex = new RegExp(`${searchstring}`, "i").exec(result.text); + let text = + textindex !== null + ? result.text.slice( + Math.max(textindex.index - 100, 0), + Math.min( + textindex.index + querystring.length + 100, + result.text.length + ) + ) + : ""; // cut-off text before and after from the match + + text = text.length ? escape(text) : ""; + + let display_result = text.length + ? "..." + + text.replace( + new RegExp(`${escape(searchstring)}`, "i"), // For first occurrence + '$&' + ) + + "..." + : ""; // highlights the match + + let in_code = false; + if (!["page", "section"].includes(result.category.toLowerCase())) { + in_code = true; + } + + // We encode the full url to escape some special characters which can lead to broken links + let result_div = ` + +
+
${escape(result.title)}
+
${result.category}
+
+

+ ${display_result} +

+
+ ${display_link} +
+ + ${search_divider} + `; + + return result_div; + } + + self.onmessage = function (e) { + let query = e.data; + let results = index.search(query, { + filter: (result) => { + // Only return relevant results + return result.score >= 1; + }, + combineWith: "AND", + }); + + // Pre-filter to deduplicate and limit to 200 per category to the extent + // possible without knowing what the filters are. + let filtered_results = []; + let counts = {}; + for (let filter of filters) { + counts[filter] = 0; + } + let present = {}; + + for (let result of results) { + cat = result.category; + cnt = counts[cat]; + if (cnt < 200) { + id = cat + "---" + result.location; + if (present[id]) { + continue; + } + present[id] = true; + filtered_results.push({ + location: result.location, + category: cat, + div: make_search_result(result, query), + }); + } + } + + postMessage(filtered_results); + }; +} + +// `worker = Threads.@spawn worker_function(documenterSearchIndex)`, but in JavaScript! +const filters = [ + ...new Set(documenterSearchIndex["docs"].map((x) => x.category)), +]; +const worker_str = + "(" + + worker_function.toString() + + ")(" + + JSON.stringify(documenterSearchIndex["docs"]) + + "," + + JSON.stringify(documenterBaseURL) + + "," + + JSON.stringify(filters) + + ")"; +const worker_blob = new Blob([worker_str], { type: "text/javascript" }); +const worker = new Worker(URL.createObjectURL(worker_blob)); + +/////// SEARCH MAIN /////// + +// Whether the worker is currently handling a search. This is a boolean +// as the worker only ever handles 1 or 0 searches at a time. +var worker_is_running = false; + +// The last search text that was sent to the worker. This is used to determine +// if the worker should be launched again when it reports back results. +var last_search_text = ""; + +// The results of the last search. This, in combination with the state of the filters +// in the DOM, is used compute the results to display on calls to update_search. +var unfiltered_results = []; + +// Which filter is currently selected +var selected_filter = ""; + +$(document).on("input", ".documenter-search-input", function (event) { + if (!worker_is_running) { + launch_search(); + } +}); + +function launch_search() { + worker_is_running = true; + last_search_text = $(".documenter-search-input").val(); + worker.postMessage(last_search_text); +} + +worker.onmessage = function (e) { + if (last_search_text !== $(".documenter-search-input").val()) { + launch_search(); + } else { + worker_is_running = false; + } + + unfiltered_results = e.data; + update_search(); +}; + +$(document).on("click", ".search-filter", function () { + if ($(this).hasClass("search-filter-selected")) { + selected_filter = ""; + } else { + selected_filter = $(this).text().toLowerCase(); + } + + // This updates search results and toggles classes for UI: + update_search(); +}); + +/** + * Make/Update the search component + */ +function update_search() { + let querystring = $(".documenter-search-input").val(); + + if (querystring.trim()) { + if (selected_filter == "") { + results = unfiltered_results; + } else { + results = unfiltered_results.filter((result) => { + return selected_filter == result.category.toLowerCase(); + }); + } + + let search_result_container = ``; + let modal_filters = make_modal_body_filters(); + let search_divider = `
`; + + if (results.length) { + let links = []; + let count = 0; + let search_results = ""; + + for (var i = 0, n = results.length; i < n && count < 200; ++i) { + let result = results[i]; + if (result.location && !links.includes(result.location)) { + search_results += result.div; + count++; + links.push(result.location); + } + } + + if (count == 1) { + count_str = "1 result"; + } else if (count == 200) { + count_str = "200+ results"; + } else { + count_str = count + " results"; + } + let result_count = `
${count_str}
`; + + search_result_container = ` +
+ ${modal_filters} + ${search_divider} + ${result_count} +
+ ${search_results} +
+
+ `; + } else { + search_result_container = ` +
+ ${modal_filters} + ${search_divider} +
0 result(s)
+
+
No result found!
+ `; + } + + if ($(".search-modal-card-body").hasClass("is-justify-content-center")) { + $(".search-modal-card-body").removeClass("is-justify-content-center"); + } + + $(".search-modal-card-body").html(search_result_container); + } else { + if (!$(".search-modal-card-body").hasClass("is-justify-content-center")) { + $(".search-modal-card-body").addClass("is-justify-content-center"); + } + + $(".search-modal-card-body").html(` +
Type something to get started!
+ `); + } +} + +/** + * Make the modal filter html + * + * @returns string + */ +function make_modal_body_filters() { + let str = filters + .map((val) => { + if (selected_filter == val.toLowerCase()) { + return `${val}`; + } else { + return `${val}`; + } + }) + .join(""); + + return ` +
+ Filters: + ${str} +
`; +} + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// Modal settings dialog +$(document).ready(function () { + var settings = $("#documenter-settings"); + $("#documenter-settings-button").click(function () { + settings.toggleClass("is-active"); + }); + // Close the dialog if X is clicked + $("#documenter-settings button.delete").click(function () { + settings.removeClass("is-active"); + }); + // Close dialog if ESC is pressed + $(document).keyup(function (e) { + if (e.keyCode == 27) settings.removeClass("is-active"); + }); +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +$(document).ready(function () { + let search_modal_header = ` +
+
+

+ + + + +

+
+
+ +
+
+ `; + + let initial_search_body = ` +
Type something to get started!
+ `; + + let search_modal_footer = ` + + `; + + $(document.body).append( + ` + + ` + ); + + document.querySelector(".docs-search-query").addEventListener("click", () => { + openModal(); + }); + + document + .querySelector(".close-search-modal") + .addEventListener("click", () => { + closeModal(); + }); + + $(document).on("click", ".search-result-link", function () { + closeModal(); + }); + + document.addEventListener("keydown", (event) => { + if ((event.ctrlKey || event.metaKey) && event.key === "/") { + openModal(); + } else if (event.key === "Escape") { + closeModal(); + } + + return false; + }); + + // Functions to open and close a modal + function openModal() { + let searchModal = document.querySelector("#search-modal"); + + searchModal.classList.add("is-active"); + document.querySelector(".documenter-search-input").focus(); + } + + function closeModal() { + let searchModal = document.querySelector("#search-modal"); + let initial_search_body = ` +
Type something to get started!
+ `; + + searchModal.classList.remove("is-active"); + document.querySelector(".documenter-search-input").blur(); + + if (!$(".search-modal-card-body").hasClass("is-justify-content-center")) { + $(".search-modal-card-body").addClass("is-justify-content-center"); + } + + $(".documenter-search-input").val(""); + $(".search-modal-card-body").html(initial_search_body); + } + + document + .querySelector("#search-modal .modal-background") + .addEventListener("click", () => { + closeModal(); + }); +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// Manages the showing and hiding of the sidebar. +$(document).ready(function () { + var sidebar = $("#documenter > .docs-sidebar"); + var sidebar_button = $("#documenter-sidebar-button"); + sidebar_button.click(function (ev) { + ev.preventDefault(); + sidebar.toggleClass("visible"); + if (sidebar.hasClass("visible")) { + // Makes sure that the current menu item is visible in the sidebar. + $("#documenter .docs-menu a.is-active").focus(); + } + }); + $("#documenter > .docs-main").bind("click", function (ev) { + if ($(ev.target).is(sidebar_button)) { + return; + } + if (sidebar.hasClass("visible")) { + sidebar.removeClass("visible"); + } + }); +}); + +// Resizes the package name / sitename in the sidebar if it is too wide. +// Inspired by: https://github.com/davatron5000/FitText.js +$(document).ready(function () { + e = $("#documenter .docs-autofit"); + function resize() { + var L = parseInt(e.css("max-width"), 10); + var L0 = e.width(); + if (L0 > L) { + var h0 = parseInt(e.css("font-size"), 10); + e.css("font-size", (L * h0) / L0); + // TODO: make sure it survives resizes? + } + } + // call once and then register events + resize(); + $(window).resize(resize); + $(window).on("orientationchange", resize); +}); + +// Scroll the navigation bar to the currently selected menu item +$(document).ready(function () { + var sidebar = $("#documenter .docs-menu").get(0); + var active = $("#documenter .docs-menu .is-active").get(0); + if (typeof active !== "undefined") { + sidebar.scrollTop = active.offsetTop - sidebar.offsetTop - 15; + } +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// Theme picker setup +$(document).ready(function () { + // onchange callback + $("#documenter-themepicker").change(function themepick_callback(ev) { + var themename = $("#documenter-themepicker option:selected").attr("value"); + if (themename === "auto") { + // set_theme(window.matchMedia('(prefers-color-scheme: dark)').matches ? 'dark' : 'light'); + window.localStorage.removeItem("documenter-theme"); + } else { + // set_theme(themename); + window.localStorage.setItem("documenter-theme", themename); + } + // We re-use the global function from themeswap.js to actually do the swapping. + set_theme_from_local_storage(); + }); + + // Make sure that the themepicker displays the correct theme when the theme is retrieved + // from localStorage + if (typeof window.localStorage !== "undefined") { + var theme = window.localStorage.getItem("documenter-theme"); + if (theme !== null) { + $("#documenter-themepicker option").each(function (i, e) { + e.selected = e.value === theme; + }); + } + } +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// update the version selector with info from the siteinfo.js and ../versions.js files +$(document).ready(function () { + // If the version selector is disabled with DOCUMENTER_VERSION_SELECTOR_DISABLED in the + // siteinfo.js file, we just return immediately and not display the version selector. + if ( + typeof DOCUMENTER_VERSION_SELECTOR_DISABLED === "boolean" && + DOCUMENTER_VERSION_SELECTOR_DISABLED + ) { + return; + } + + var version_selector = $("#documenter .docs-version-selector"); + var version_selector_select = $("#documenter .docs-version-selector select"); + + version_selector_select.change(function (x) { + target_href = version_selector_select + .children("option:selected") + .get(0).value; + window.location.href = target_href; + }); + + // add the current version to the selector based on siteinfo.js, but only if the selector is empty + if ( + typeof DOCUMENTER_CURRENT_VERSION !== "undefined" && + $("#version-selector > option").length == 0 + ) { + var option = $( + "" + ); + version_selector_select.append(option); + } + + if (typeof DOC_VERSIONS !== "undefined") { + var existing_versions = version_selector_select.children("option"); + var existing_versions_texts = existing_versions.map(function (i, x) { + return x.text; + }); + DOC_VERSIONS.forEach(function (each) { + var version_url = documenterBaseURL + "/../" + each + "/"; + var existing_id = $.inArray(each, existing_versions_texts); + // if not already in the version selector, add it as a new option, + // otherwise update the old option with the URL and enable it + if (existing_id == -1) { + var option = $( + "" + ); + version_selector_select.append(option); + } else { + var option = existing_versions[existing_id]; + option.value = version_url; + option.disabled = false; + } + }); + } + + // only show the version selector if the selector has been populated + if (version_selector_select.children("option").length > 0) { + version_selector.toggleClass("visible"); + } +}); + +}) diff --git a/previews/PR1153/assets/emaddcc-thinning4_sketch.png b/previews/PR1153/assets/emaddcc-thinning4_sketch.png new file mode 100755 index 0000000000..554a207c70 Binary files /dev/null and b/previews/PR1153/assets/emaddcc-thinning4_sketch.png differ diff --git a/previews/PR1153/assets/harmonieDA.dot b/previews/PR1153/assets/harmonieDA.dot new file mode 100644 index 0000000000..00f9583bf7 --- /dev/null +++ b/previews/PR1153/assets/harmonieDA.dot @@ -0,0 +1,86 @@ +digraph Harmonie { + +//------------------------------------------- +// Tasks +//------------------------------------------- +node[shape="rectangle"] +Prepare_ob +Bator +Oulan +FirstGuess +Fetch_assim_data +Canari +Screening +Minim +Forecast + + +//------------------------------------------/ +// Files +//------------------------------------------/ +node[shape="note"] +MXMIN1999p0000 [label="MXMIN1999+0000", tooltip="Upper air Analysis"] +ICMSHANALp0000sfx [label="ICMSHANAL+0000.sfx", tooltip="Surface Analysis"] +obYYYYMMDD [label="observations/ob\$YYYYMMDD"] +OBSOUL [label="oulan/OBSOUL"] +odb [shape="cylinder"] +odb_ccma [shape="cylinder"] +odb_can_merge [shape="cylinder"] +odbvar [shape="cylinder"] +odb_can [shape="cylinder"] +odb_can_ori [shape="cylinder"] +fc_start +first_guess +first_guess_sfx +fc_start_sfx +VarBC_very_fg [label="VarBC.cycle", tooltip="VarBC very first guess" ] +VarBC_fg [label="VarBC.cycle", tooltip="VarBC first guess"] +VarBC_an [label="VarBC.cycle", tooltip="VarBC analysis"] +stabal96 [label="stabal96.{cv,bal}", tooltip="Structure Functions"] + + +/// links + + Prepare_ob -> {obYYYYMMDD } + Fetch_assim_data -> {VarBC_very_fg, stabal96} + FirstGuess -> {first_guess_sfx, first_guess} +{obYYYYMMDD } -> Oulan -> {OBSOUL } +{OBSOUL, obYYYYMMDD } -> Bator -> {odb, odb_can_ori } +{first_guess, first_guess_sfx, ECMWF_CANARI_SST_SIC,odb_can_ori} -> Canari -> {ICMSHANALp0000sfx, odb_can, odb_can_merge} +{first_guess, VarBC_very_fg, odb } -> Screening -> {odb_ccma, odbvar, VarBC_fg } +{odb_ccma, VarBC_fg, first_guess } -> Minim -> {MXMIN1999p0000, VarBC_an} +{fc_start, fc_start_sfx } -> Forecast + + +//---------------------------------- +// "Static" input, namelists, climate files, etc. +//---------------------------------- + +{LISTE_NOIRE_DIAP, LISTE_LOC,param_batorcfg } -> Bator +{stabal96 } -> Minim + + + + +//--------------------------------------------------------------- +// Symlinks +//--------------------------------------------------------------- +ICMSHANALp0000sfx -> fc_start_sfx [label="Canari", style=dashed] +MXMIN1999p0000 -> fc_start [label="Minim", style=dashed] + +//----------------------------------------------------------------- +// URL +//---------------------------------------------------------------- +Prepare_ob [href="../Observations/ObservationData/index.html"] +Canari [href="../DataAssimilation/Surface/CANARI/index.html"] +Forecast [href="../ForecastModel/Forecast/index.html"] +Oulan [href="../Observations/Oulan/index.html"] +Bator [href="../Observations/Bator/index.html"] +Minim [href="http://www.umr-cnrm.fr/gmapdoc/IMG/pdf/ykminim45.pdf"] +Screening [href="../DataAssimilation/Screening/index.html"] +stabal96 [href="../DataAssimilation/Structurefunctions/index.html"] +LISTE_NOIRE_DIAP [href="../Observations/Bator/index.html#LISTE_NOIRE_DIAP-1"] +LISTE_LOC [href="../Observations/Bator/index.html#LISTE_LOC-1"] + +}// Digraph Harmonie + diff --git a/previews/PR1153/assets/logo.png b/previews/PR1153/assets/logo.png new file mode 100644 index 0000000000..2d6213e05b Binary files /dev/null and b/previews/PR1153/assets/logo.png differ diff --git a/previews/PR1153/assets/nwf_seviri.png b/previews/PR1153/assets/nwf_seviri.png new file mode 100644 index 0000000000..b5a4b52c60 Binary files /dev/null and b/previews/PR1153/assets/nwf_seviri.png differ diff --git a/previews/PR1153/assets/projections1.png b/previews/PR1153/assets/projections1.png new file mode 100644 index 0000000000..829e9ecf9c Binary files /dev/null and b/previews/PR1153/assets/projections1.png differ diff --git a/previews/PR1153/assets/rotmer.png b/previews/PR1153/assets/rotmer.png new file mode 100644 index 0000000000..375d9d5887 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.button.is-black.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-black.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-black.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-frappe .button.is-black.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-black.is-outlined{background-color:transparent;border-color:#0a0a0a;box-shadow:none;color:#0a0a0a}html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-focused{background-color:#fff;color:#0a0a0a}html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-frappe .button.is-light{background-color:#f5f5f5;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light:hover,html.theme--catppuccin-frappe .button.is-light.is-hovered{background-color:#eee;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light:focus,html.theme--catppuccin-frappe .button.is-light.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light:focus:not(:active),html.theme--catppuccin-frappe .button.is-light.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(245,245,245,0.25)}html.theme--catppuccin-frappe .button.is-light:active,html.theme--catppuccin-frappe .button.is-light.is-active{background-color:#e8e8e8;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-light{background-color:#f5f5f5;border-color:#f5f5f5;box-shadow:none}html.theme--catppuccin-frappe .button.is-light.is-inverted{background-color:rgba(0,0,0,0.7);color:#f5f5f5}html.theme--catppuccin-frappe 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.button.is-light.is-outlined.is-focused{background-color:#f5f5f5;border-color:#f5f5f5;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light.is-outlined.is-loading::after{border-color:transparent transparent #f5f5f5 #f5f5f5 !important}html.theme--catppuccin-frappe .button.is-light.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-light.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-light.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-light.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-frappe .button.is-light.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-light.is-outlined{background-color:transparent;border-color:#f5f5f5;box-shadow:none;color:#f5f5f5}html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#f5f5f5}html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-light.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #f5f5f5 #f5f5f5 !important}html.theme--catppuccin-frappe 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!important}html.theme--catppuccin-frappe .button.is-dark.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .content kbd.button.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-dark.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .content kbd.button.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-dark.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .content kbd.button.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-dark.is-outlined.is-loading.is-focused::after,html.theme--catppuccin-frappe .content kbd.button.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-frappe .button.is-dark.is-outlined[disabled],html.theme--catppuccin-frappe .content kbd.button.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-dark.is-outlined,fieldset[disabled] html.theme--catppuccin-frappe .content kbd.button.is-outlined{background-color:transparent;border-color:#414559;box-shadow:none;color:#414559}html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-focused,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-focused{background-color:#fff;color:#414559}html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined.is-loading.is-focused::after,html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #414559 #414559 !important}html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined[disabled],html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-dark.is-inverted.is-outlined,fieldset[disabled] html.theme--catppuccin-frappe .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-frappe .button.is-primary,html.theme--catppuccin-frappe .docstring>section>a.button.docs-sourcelink{background-color:#8caaee;border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-primary:hover,html.theme--catppuccin-frappe .docstring>section>a.button.docs-sourcelink:hover,html.theme--catppuccin-frappe .button.is-primary.is-hovered,html.theme--catppuccin-frappe .docstring>section>a.button.is-hovered.docs-sourcelink{background-color:#81a2ec;border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-primary:focus,html.theme--catppuccin-frappe 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.button.is-success.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-success.is-outlined:focus,html.theme--catppuccin-frappe .button.is-success.is-outlined.is-focused{background-color:#a6d189;border-color:#a6d189;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-success.is-outlined.is-loading::after{border-color:transparent transparent #a6d189 #a6d189 !important}html.theme--catppuccin-frappe .button.is-success.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-success.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-success.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-success.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-frappe .button.is-success.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-success.is-outlined{background-color:transparent;border-color:#a6d189;box-shadow:none;color:#a6d189}html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#a6d189}html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #a6d189 #a6d189 !important}html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-success.is-light{background-color:#f4f9f0;color:#446a29}html.theme--catppuccin-frappe .button.is-success.is-light:hover,html.theme--catppuccin-frappe .button.is-success.is-light.is-hovered{background-color:#edf6e7;border-color:transparent;color:#446a29}html.theme--catppuccin-frappe .button.is-success.is-light:active,html.theme--catppuccin-frappe .button.is-success.is-light.is-active{background-color:#e6f2de;border-color:transparent;color:#446a29}html.theme--catppuccin-frappe .button.is-warning{background-color:#e5c890;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning:hover,html.theme--catppuccin-frappe .button.is-warning.is-hovered{background-color:#e3c386;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning:focus,html.theme--catppuccin-frappe .button.is-warning.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning:focus:not(:active),html.theme--catppuccin-frappe .button.is-warning.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(229,200,144,0.25)}html.theme--catppuccin-frappe .button.is-warning:active,html.theme--catppuccin-frappe .button.is-warning.is-active{background-color:#e0be7b;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-warning{background-color:#e5c890;border-color:#e5c890;box-shadow:none}html.theme--catppuccin-frappe .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);color:#e5c890}html.theme--catppuccin-frappe .button.is-warning.is-inverted:hover,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#e5c890}html.theme--catppuccin-frappe .button.is-warning.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-frappe .button.is-warning.is-outlined{background-color:transparent;border-color:#e5c890;color:#e5c890}html.theme--catppuccin-frappe .button.is-warning.is-outlined:hover,html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-warning.is-outlined:focus,html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-focused{background-color:#e5c890;border-color:#e5c890;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-loading::after{border-color:transparent transparent #e5c890 #e5c890 !important}html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-warning.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-frappe .button.is-warning.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-warning.is-outlined{background-color:transparent;border-color:#e5c890;box-shadow:none;color:#e5c890}html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#e5c890}html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #e5c890 #e5c890 !important}html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-frappe .button.is-warning.is-light{background-color:#fbf7ee;color:#78591c}html.theme--catppuccin-frappe .button.is-warning.is-light:hover,html.theme--catppuccin-frappe .button.is-warning.is-light.is-hovered{background-color:#f9f2e4;border-color:transparent;color:#78591c}html.theme--catppuccin-frappe .button.is-warning.is-light:active,html.theme--catppuccin-frappe .button.is-warning.is-light.is-active{background-color:#f6edda;border-color:transparent;color:#78591c}html.theme--catppuccin-frappe .button.is-danger{background-color:#e78284;border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-danger:hover,html.theme--catppuccin-frappe .button.is-danger.is-hovered{background-color:#e57779;border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-danger:focus,html.theme--catppuccin-frappe .button.is-danger.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-danger:focus:not(:active),html.theme--catppuccin-frappe .button.is-danger.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(231,130,132,0.25)}html.theme--catppuccin-frappe .button.is-danger:active,html.theme--catppuccin-frappe .button.is-danger.is-active{background-color:#e36d6f;border-color:transparent;color:#fff}html.theme--catppuccin-frappe .button.is-danger[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-danger{background-color:#e78284;border-color:#e78284;box-shadow:none}html.theme--catppuccin-frappe .button.is-danger.is-inverted{background-color:#fff;color:#e78284}html.theme--catppuccin-frappe .button.is-danger.is-inverted:hover,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-frappe .button.is-danger.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#e78284}html.theme--catppuccin-frappe .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-frappe .button.is-danger.is-outlined{background-color:transparent;border-color:#e78284;color:#e78284}html.theme--catppuccin-frappe .button.is-danger.is-outlined:hover,html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-danger.is-outlined:focus,html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-focused{background-color:#e78284;border-color:#e78284;color:#fff}html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-loading::after{border-color:transparent transparent #e78284 #e78284 !important}html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-danger.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-frappe .button.is-danger.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-danger.is-outlined{background-color:transparent;border-color:#e78284;box-shadow:none;color:#e78284}html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined:hover,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined:focus,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-focused{background-color:#fff;color:#e78284}html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #e78284 #e78284 !important}html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-frappe .button.is-danger.is-light{background-color:#fceeee;color:#9a1e20}html.theme--catppuccin-frappe .button.is-danger.is-light:hover,html.theme--catppuccin-frappe .button.is-danger.is-light.is-hovered{background-color:#fae3e4;border-color:transparent;color:#9a1e20}html.theme--catppuccin-frappe .button.is-danger.is-light:active,html.theme--catppuccin-frappe .button.is-danger.is-light.is-active{background-color:#f8d8d9;border-color:transparent;color:#9a1e20}html.theme--catppuccin-frappe .button.is-small,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.button{font-size:.75rem}html.theme--catppuccin-frappe .button.is-small:not(.is-rounded),html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.button:not(.is-rounded){border-radius:3px}html.theme--catppuccin-frappe .button.is-normal{font-size:1rem}html.theme--catppuccin-frappe .button.is-medium{font-size:1.25rem}html.theme--catppuccin-frappe .button.is-large{font-size:1.5rem}html.theme--catppuccin-frappe .button[disabled],fieldset[disabled] html.theme--catppuccin-frappe .button{background-color:#737994;border-color:#626880;box-shadow:none;opacity:.5}html.theme--catppuccin-frappe .button.is-fullwidth{display:flex;width:100%}html.theme--catppuccin-frappe .button.is-loading{color:transparent !important;pointer-events:none}html.theme--catppuccin-frappe .button.is-loading::after{position:absolute;left:calc(50% - (1em * 0.5));top:calc(50% - (1em * 0.5));position:absolute !important}html.theme--catppuccin-frappe .button.is-static{background-color:#292c3c;border-color:#626880;color:#838ba7;box-shadow:none;pointer-events:none}html.theme--catppuccin-frappe .button.is-rounded,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.button{border-radius:9999px;padding-left:calc(1em + 0.25em);padding-right:calc(1em + 0.25em)}html.theme--catppuccin-frappe .buttons{align-items:center;display:flex;flex-wrap:wrap;justify-content:flex-start}html.theme--catppuccin-frappe .buttons .button{margin-bottom:0.5rem}html.theme--catppuccin-frappe .buttons .button:not(:last-child):not(.is-fullwidth){margin-right:.5rem}html.theme--catppuccin-frappe .buttons:last-child{margin-bottom:-0.5rem}html.theme--catppuccin-frappe .buttons:not(:last-child){margin-bottom:1rem}html.theme--catppuccin-frappe .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large){font-size:.75rem}html.theme--catppuccin-frappe .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large):not(.is-rounded){border-radius:3px}html.theme--catppuccin-frappe .buttons.are-medium .button:not(.is-small):not(.is-normal):not(.is-large){font-size:1.25rem}html.theme--catppuccin-frappe .buttons.are-large .button:not(.is-small):not(.is-normal):not(.is-medium){font-size:1.5rem}html.theme--catppuccin-frappe .buttons.has-addons .button:not(:first-child){border-bottom-left-radius:0;border-top-left-radius:0}html.theme--catppuccin-frappe .buttons.has-addons .button:not(:last-child){border-bottom-right-radius:0;border-top-right-radius:0;margin-right:-1px}html.theme--catppuccin-frappe .buttons.has-addons .button:last-child{margin-right:0}html.theme--catppuccin-frappe .buttons.has-addons .button:hover,html.theme--catppuccin-frappe .buttons.has-addons .button.is-hovered{z-index:2}html.theme--catppuccin-frappe .buttons.has-addons .button:focus,html.theme--catppuccin-frappe .buttons.has-addons .button.is-focused,html.theme--catppuccin-frappe .buttons.has-addons .button:active,html.theme--catppuccin-frappe .buttons.has-addons .button.is-active,html.theme--catppuccin-frappe .buttons.has-addons .button.is-selected{z-index:3}html.theme--catppuccin-frappe .buttons.has-addons .button:focus:hover,html.theme--catppuccin-frappe .buttons.has-addons .button.is-focused:hover,html.theme--catppuccin-frappe .buttons.has-addons .button:active:hover,html.theme--catppuccin-frappe .buttons.has-addons .button.is-active:hover,html.theme--catppuccin-frappe .buttons.has-addons .button.is-selected:hover{z-index:4}html.theme--catppuccin-frappe .buttons.has-addons .button.is-expanded{flex-grow:1;flex-shrink:1}html.theme--catppuccin-frappe .buttons.is-centered{justify-content:center}html.theme--catppuccin-frappe .buttons.is-centered:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--catppuccin-frappe .buttons.is-right{justify-content:flex-end}html.theme--catppuccin-frappe .buttons.is-right:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}@media screen and (max-width: 768px){html.theme--catppuccin-frappe .button.is-responsive.is-small,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.5625rem}html.theme--catppuccin-frappe .button.is-responsive,html.theme--catppuccin-frappe .button.is-responsive.is-normal{font-size:.65625rem}html.theme--catppuccin-frappe .button.is-responsive.is-medium{font-size:.75rem}html.theme--catppuccin-frappe .button.is-responsive.is-large{font-size:1rem}}@media screen and (min-width: 769px) and (max-width: 1055px){html.theme--catppuccin-frappe .button.is-responsive.is-small,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.65625rem}html.theme--catppuccin-frappe .button.is-responsive,html.theme--catppuccin-frappe .button.is-responsive.is-normal{font-size:.75rem}html.theme--catppuccin-frappe .button.is-responsive.is-medium{font-size:1rem}html.theme--catppuccin-frappe .button.is-responsive.is-large{font-size:1.25rem}}html.theme--catppuccin-frappe .container{flex-grow:1;margin:0 auto;position:relative;width:auto}html.theme--catppuccin-frappe .container.is-fluid{max-width:none !important;padding-left:32px;padding-right:32px;width:100%}@media screen and (min-width: 1056px){html.theme--catppuccin-frappe .container{max-width:992px}}@media screen and (max-width: 1215px){html.theme--catppuccin-frappe .container.is-widescreen:not(.is-max-desktop){max-width:1152px}}@media screen and (max-width: 1407px){html.theme--catppuccin-frappe .container.is-fullhd:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}@media screen and (min-width: 1216px){html.theme--catppuccin-frappe .container:not(.is-max-desktop){max-width:1152px}}@media screen and (min-width: 1408px){html.theme--catppuccin-frappe .container:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}html.theme--catppuccin-frappe .content li+li{margin-top:0.25em}html.theme--catppuccin-frappe .content p:not(:last-child),html.theme--catppuccin-frappe .content dl:not(:last-child),html.theme--catppuccin-frappe .content ol:not(:last-child),html.theme--catppuccin-frappe .content ul:not(:last-child),html.theme--catppuccin-frappe .content blockquote:not(:last-child),html.theme--catppuccin-frappe .content pre:not(:last-child),html.theme--catppuccin-frappe .content table:not(:last-child){margin-bottom:1em}html.theme--catppuccin-frappe .content h1,html.theme--catppuccin-frappe .content h2,html.theme--catppuccin-frappe .content h3,html.theme--catppuccin-frappe .content h4,html.theme--catppuccin-frappe .content h5,html.theme--catppuccin-frappe .content h6{color:#c6d0f5;font-weight:600;line-height:1.125}html.theme--catppuccin-frappe .content h1{font-size:2em;margin-bottom:0.5em}html.theme--catppuccin-frappe .content h1:not(:first-child){margin-top:1em}html.theme--catppuccin-frappe .content h2{font-size:1.75em;margin-bottom:0.5714em}html.theme--catppuccin-frappe .content h2:not(:first-child){margin-top:1.1428em}html.theme--catppuccin-frappe .content 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.navbar-item.is-tab:hover{background-color:rgba(0,0,0,0);border-bottom-color:#8caaee}html.theme--catppuccin-frappe .navbar-item.is-tab.is-active{background-color:rgba(0,0,0,0);border-bottom-color:#8caaee;border-bottom-style:solid;border-bottom-width:3px;color:#8caaee;padding-bottom:calc(0.5rem - 3px)}html.theme--catppuccin-frappe .navbar-content{flex-grow:1;flex-shrink:1}html.theme--catppuccin-frappe .navbar-link:not(.is-arrowless){padding-right:2.5em}html.theme--catppuccin-frappe .navbar-link:not(.is-arrowless)::after{border-color:#fff;margin-top:-0.375em;right:1.125em}html.theme--catppuccin-frappe .navbar-dropdown{font-size:0.875rem;padding-bottom:0.5rem;padding-top:0.5rem}html.theme--catppuccin-frappe .navbar-dropdown .navbar-item{padding-left:1.5rem;padding-right:1.5rem}html.theme--catppuccin-frappe .navbar-divider{background-color:rgba(0,0,0,0.2);border:none;display:none;height:2px;margin:0.5rem 0}@media screen and (max-width: 1055px){html.theme--catppuccin-frappe 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a.navbar-item:hover{background-color:rgba(0,0,0,0);color:#838ba7}html.theme--catppuccin-frappe .navbar-dropdown a.navbar-item.is-active{background-color:rgba(0,0,0,0);color:#8caaee}.navbar.is-spaced html.theme--catppuccin-frappe .navbar-dropdown,html.theme--catppuccin-frappe .navbar-dropdown.is-boxed{border-radius:8px;border-top:none;box-shadow:0 8px 8px rgba(10,10,10,0.1), 0 0 0 1px rgba(10,10,10,0.1);display:block;opacity:0;pointer-events:none;top:calc(100% + (-4px));transform:translateY(-5px);transition-duration:86ms;transition-property:opacity, transform}html.theme--catppuccin-frappe .navbar-dropdown.is-right{left:auto;right:0}html.theme--catppuccin-frappe .navbar-divider{display:block}html.theme--catppuccin-frappe .navbar>.container .navbar-brand,html.theme--catppuccin-frappe .container>.navbar .navbar-brand{margin-left:-.75rem}html.theme--catppuccin-frappe .navbar>.container .navbar-menu,html.theme--catppuccin-frappe .container>.navbar .navbar-menu{margin-right:-.75rem}html.theme--catppuccin-frappe .navbar.is-fixed-bottom-desktop,html.theme--catppuccin-frappe .navbar.is-fixed-top-desktop{left:0;position:fixed;right:0;z-index:30}html.theme--catppuccin-frappe .navbar.is-fixed-bottom-desktop{bottom:0}html.theme--catppuccin-frappe .navbar.is-fixed-bottom-desktop.has-shadow{box-shadow:0 -2px 3px rgba(10,10,10,0.1)}html.theme--catppuccin-frappe .navbar.is-fixed-top-desktop{top:0}html.theme--catppuccin-frappe html.has-navbar-fixed-top-desktop,html.theme--catppuccin-frappe body.has-navbar-fixed-top-desktop{padding-top:4rem}html.theme--catppuccin-frappe html.has-navbar-fixed-bottom-desktop,html.theme--catppuccin-frappe body.has-navbar-fixed-bottom-desktop{padding-bottom:4rem}html.theme--catppuccin-frappe html.has-spaced-navbar-fixed-top,html.theme--catppuccin-frappe body.has-spaced-navbar-fixed-top{padding-top:6rem}html.theme--catppuccin-frappe html.has-spaced-navbar-fixed-bottom,html.theme--catppuccin-frappe body.has-spaced-navbar-fixed-bottom{padding-bottom:6rem}html.theme--catppuccin-frappe a.navbar-item.is-active,html.theme--catppuccin-frappe .navbar-link.is-active{color:#8caaee}html.theme--catppuccin-frappe a.navbar-item.is-active:not(:focus):not(:hover),html.theme--catppuccin-frappe .navbar-link.is-active:not(:focus):not(:hover){background-color:rgba(0,0,0,0)}html.theme--catppuccin-frappe .navbar-item.has-dropdown:focus .navbar-link,html.theme--catppuccin-frappe .navbar-item.has-dropdown:hover .navbar-link,html.theme--catppuccin-frappe .navbar-item.has-dropdown.is-active .navbar-link{background-color:rgba(0,0,0,0)}}html.theme--catppuccin-frappe .hero.is-fullheight-with-navbar{min-height:calc(100vh - 4rem)}html.theme--catppuccin-frappe .pagination{font-size:1rem;margin:-.25rem}html.theme--catppuccin-frappe .pagination.is-small,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.pagination{font-size:.75rem}html.theme--catppuccin-frappe .pagination.is-medium{font-size:1.25rem}html.theme--catppuccin-frappe .pagination.is-large{font-size:1.5rem}html.theme--catppuccin-frappe .pagination.is-rounded .pagination-previous,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.pagination .pagination-previous,html.theme--catppuccin-frappe .pagination.is-rounded .pagination-next,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.pagination .pagination-next{padding-left:1em;padding-right:1em;border-radius:9999px}html.theme--catppuccin-frappe .pagination.is-rounded .pagination-link,html.theme--catppuccin-frappe #documenter .docs-sidebar form.docs-search>input.pagination .pagination-link{border-radius:9999px}html.theme--catppuccin-frappe .pagination,html.theme--catppuccin-frappe .pagination-list{align-items:center;display:flex;justify-content:center;text-align:center}html.theme--catppuccin-frappe .pagination-previous,html.theme--catppuccin-frappe .pagination-next,html.theme--catppuccin-frappe .pagination-link,html.theme--catppuccin-frappe .pagination-ellipsis{font-size:1em;justify-content:center;margin:.25rem;padding-left:.5em;padding-right:.5em;text-align:center}html.theme--catppuccin-frappe .pagination-previous,html.theme--catppuccin-frappe .pagination-next,html.theme--catppuccin-frappe .pagination-link{border-color:#626880;color:#8caaee;min-width:2.5em}html.theme--catppuccin-frappe .pagination-previous:hover,html.theme--catppuccin-frappe .pagination-next:hover,html.theme--catppuccin-frappe .pagination-link:hover{border-color:#737994;color:#99d1db}html.theme--catppuccin-frappe .pagination-previous:focus,html.theme--catppuccin-frappe .pagination-next:focus,html.theme--catppuccin-frappe .pagination-link:focus{border-color:#737994}html.theme--catppuccin-frappe .pagination-previous:active,html.theme--catppuccin-frappe .pagination-next:active,html.theme--catppuccin-frappe .pagination-link:active{box-shadow:inset 0 1px 2px 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rgba(10,10,10,0.25)}html.theme--catppuccin-latte .button.is-black:active,html.theme--catppuccin-latte .button.is-black.is-active{background-color:#000;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-black[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-black{background-color:#0a0a0a;border-color:#0a0a0a;box-shadow:none}html.theme--catppuccin-latte .button.is-black.is-inverted{background-color:#fff;color:#0a0a0a}html.theme--catppuccin-latte .button.is-black.is-inverted:hover,html.theme--catppuccin-latte .button.is-black.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-latte .button.is-black.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-black.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#0a0a0a}html.theme--catppuccin-latte .button.is-black.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-black.is-outlined{background-color:transparent;border-color:#0a0a0a;color:#0a0a0a}html.theme--catppuccin-latte .button.is-black.is-outlined:hover,html.theme--catppuccin-latte .button.is-black.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-black.is-outlined:focus,html.theme--catppuccin-latte .button.is-black.is-outlined.is-focused{background-color:#0a0a0a;border-color:#0a0a0a;color:#fff}html.theme--catppuccin-latte .button.is-black.is-outlined.is-loading::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--catppuccin-latte .button.is-black.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-black.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-black.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-black.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-black.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-black.is-outlined{background-color:transparent;border-color:#0a0a0a;box-shadow:none;color:#0a0a0a}html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-focused{background-color:#fff;color:#0a0a0a}html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-latte .button.is-light{background-color:#f5f5f5;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light:hover,html.theme--catppuccin-latte .button.is-light.is-hovered{background-color:#eee;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light:focus,html.theme--catppuccin-latte .button.is-light.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light:focus:not(:active),html.theme--catppuccin-latte .button.is-light.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(245,245,245,0.25)}html.theme--catppuccin-latte .button.is-light:active,html.theme--catppuccin-latte .button.is-light.is-active{background-color:#e8e8e8;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-light{background-color:#f5f5f5;border-color:#f5f5f5;box-shadow:none}html.theme--catppuccin-latte .button.is-light.is-inverted{background-color:rgba(0,0,0,0.7);color:#f5f5f5}html.theme--catppuccin-latte .button.is-light.is-inverted:hover,html.theme--catppuccin-latte .button.is-light.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-light.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#f5f5f5}html.theme--catppuccin-latte .button.is-light.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-latte .button.is-light.is-outlined{background-color:transparent;border-color:#f5f5f5;color:#f5f5f5}html.theme--catppuccin-latte .button.is-light.is-outlined:hover,html.theme--catppuccin-latte .button.is-light.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-light.is-outlined:focus,html.theme--catppuccin-latte .button.is-light.is-outlined.is-focused{background-color:#f5f5f5;border-color:#f5f5f5;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light.is-outlined.is-loading::after{border-color:transparent transparent #f5f5f5 #f5f5f5 !important}html.theme--catppuccin-latte .button.is-light.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-light.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-light.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-light.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-latte .button.is-light.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-light.is-outlined{background-color:transparent;border-color:#f5f5f5;box-shadow:none;color:#f5f5f5}html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#f5f5f5}html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #f5f5f5 #f5f5f5 !important}html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark,html.theme--catppuccin-latte .content kbd.button{background-color:#ccd0da;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark:hover,html.theme--catppuccin-latte .content kbd.button:hover,html.theme--catppuccin-latte .button.is-dark.is-hovered,html.theme--catppuccin-latte .content kbd.button.is-hovered{background-color:#c5c9d5;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark:focus,html.theme--catppuccin-latte .content kbd.button:focus,html.theme--catppuccin-latte .button.is-dark.is-focused,html.theme--catppuccin-latte .content kbd.button.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark:focus:not(:active),html.theme--catppuccin-latte .content kbd.button:focus:not(:active),html.theme--catppuccin-latte .button.is-dark.is-focused:not(:active),html.theme--catppuccin-latte .content kbd.button.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(204,208,218,0.25)}html.theme--catppuccin-latte .button.is-dark:active,html.theme--catppuccin-latte .content kbd.button:active,html.theme--catppuccin-latte .button.is-dark.is-active,html.theme--catppuccin-latte .content kbd.button.is-active{background-color:#bdc2cf;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark[disabled],html.theme--catppuccin-latte .content kbd.button[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-dark,fieldset[disabled] html.theme--catppuccin-latte .content kbd.button{background-color:#ccd0da;border-color:#ccd0da;box-shadow:none}html.theme--catppuccin-latte .button.is-dark.is-inverted,html.theme--catppuccin-latte .content kbd.button.is-inverted{background-color:rgba(0,0,0,0.7);color:#ccd0da}html.theme--catppuccin-latte .button.is-dark.is-inverted:hover,html.theme--catppuccin-latte .content kbd.button.is-inverted:hover,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-hovered,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark.is-inverted[disabled],html.theme--catppuccin-latte .content kbd.button.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-dark.is-inverted,fieldset[disabled] html.theme--catppuccin-latte .content kbd.button.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#ccd0da}html.theme--catppuccin-latte .button.is-dark.is-loading::after,html.theme--catppuccin-latte .content kbd.button.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-latte .button.is-dark.is-outlined,html.theme--catppuccin-latte .content kbd.button.is-outlined{background-color:transparent;border-color:#ccd0da;color:#ccd0da}html.theme--catppuccin-latte .button.is-dark.is-outlined:hover,html.theme--catppuccin-latte .content kbd.button.is-outlined:hover,html.theme--catppuccin-latte .button.is-dark.is-outlined.is-hovered,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-dark.is-outlined:focus,html.theme--catppuccin-latte .content kbd.button.is-outlined:focus,html.theme--catppuccin-latte .button.is-dark.is-outlined.is-focused,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-focused{background-color:#ccd0da;border-color:#ccd0da;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark.is-outlined.is-loading::after,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-loading::after{border-color:transparent transparent #ccd0da #ccd0da !important}html.theme--catppuccin-latte .button.is-dark.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-dark.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-dark.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-dark.is-outlined.is-loading.is-focused::after,html.theme--catppuccin-latte .content kbd.button.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-latte .button.is-dark.is-outlined[disabled],html.theme--catppuccin-latte .content kbd.button.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-dark.is-outlined,fieldset[disabled] html.theme--catppuccin-latte .content kbd.button.is-outlined{background-color:transparent;border-color:#ccd0da;box-shadow:none;color:#ccd0da}html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-focused,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#ccd0da}html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined.is-loading.is-focused::after,html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #ccd0da #ccd0da !important}html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined[disabled],html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-dark.is-inverted.is-outlined,fieldset[disabled] html.theme--catppuccin-latte .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-latte .button.is-primary,html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink{background-color:#1e66f5;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-primary:hover,html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink:hover,html.theme--catppuccin-latte .button.is-primary.is-hovered,html.theme--catppuccin-latte .docstring>section>a.button.is-hovered.docs-sourcelink{background-color:#125ef4;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-primary:focus,html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink:focus,html.theme--catppuccin-latte .button.is-primary.is-focused,html.theme--catppuccin-latte .docstring>section>a.button.is-focused.docs-sourcelink{border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-primary:focus:not(:active),html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink:focus:not(:active),html.theme--catppuccin-latte .button.is-primary.is-focused:not(:active),html.theme--catppuccin-latte .docstring>section>a.button.is-focused.docs-sourcelink:not(:active){box-shadow:0 0 0 0.125em rgba(30,102,245,0.25)}html.theme--catppuccin-latte .button.is-primary:active,html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink:active,html.theme--catppuccin-latte .button.is-primary.is-active,html.theme--catppuccin-latte .docstring>section>a.button.is-active.docs-sourcelink{background-color:#0b57ef;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-primary[disabled],html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-primary,fieldset[disabled] html.theme--catppuccin-latte .docstring>section>a.button.docs-sourcelink{background-color:#1e66f5;border-color:#1e66f5;box-shadow:none}html.theme--catppuccin-latte .button.is-primary.is-inverted,html.theme--catppuccin-latte .docstring>section>a.button.is-inverted.docs-sourcelink{background-color:#fff;color:#1e66f5}html.theme--catppuccin-latte .button.is-primary.is-inverted:hover,html.theme--catppuccin-latte .docstring>section>a.button.is-inverted.docs-sourcelink:hover,html.theme--catppuccin-latte .button.is-primary.is-inverted.is-hovered,html.theme--catppuccin-latte .docstring>section>a.button.is-inverted.is-hovered.docs-sourcelink{background-color:#f2f2f2}html.theme--catppuccin-latte .button.is-primary.is-inverted[disabled],html.theme--catppuccin-latte .docstring>section>a.button.is-inverted.docs-sourcelink[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-primary.is-inverted,fieldset[disabled] html.theme--catppuccin-latte .docstring>section>a.button.is-inverted.docs-sourcelink{background-color:#fff;border-color:transparent;box-shadow:none;color:#1e66f5}html.theme--catppuccin-latte .button.is-primary.is-loading::after,html.theme--catppuccin-latte .docstring>section>a.button.is-loading.docs-sourcelink::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-primary.is-outlined,html.theme--catppuccin-latte .docstring>section>a.button.is-outlined.docs-sourcelink{background-color:transparent;border-color:#1e66f5;color:#1e66f5}html.theme--catppuccin-latte .button.is-primary.is-outlined:hover,html.theme--catppuccin-latte .docstring>section>a.button.is-outlined.docs-sourcelink:hover,html.theme--catppuccin-latte .button.is-primary.is-outlined.is-hovered,html.theme--catppuccin-latte .docstring>section>a.button.is-outlined.is-hovered.docs-sourcelink,html.theme--catppuccin-latte .button.is-primary.is-outlined:focus,html.theme--catppuccin-latte .docstring>section>a.button.is-outlined.docs-sourcelink:focus,html.theme--catppuccin-latte .button.is-primary.is-outlined.is-focused,html.theme--catppuccin-latte 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.button.is-primary.is-light.is-active,html.theme--catppuccin-latte .docstring>section>a.button.is-light.is-active.docs-sourcelink{background-color:#d3e1fd;border-color:transparent;color:#0a52e1}html.theme--catppuccin-latte .button.is-link{background-color:#1e66f5;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-link:hover,html.theme--catppuccin-latte .button.is-link.is-hovered{background-color:#125ef4;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-link:focus,html.theme--catppuccin-latte .button.is-link.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-link:focus:not(:active),html.theme--catppuccin-latte .button.is-link.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(30,102,245,0.25)}html.theme--catppuccin-latte .button.is-link:active,html.theme--catppuccin-latte .button.is-link.is-active{background-color:#0b57ef;border-color:transparent;color:#fff}html.theme--catppuccin-latte 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.button.is-success.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-success.is-outlined{background-color:transparent;border-color:#40a02b;box-shadow:none;color:#40a02b}html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-focused{background-color:#fff;color:#40a02b}html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #40a02b #40a02b !important}html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-latte .button.is-success.is-light{background-color:#f1fbef;color:#40a12b}html.theme--catppuccin-latte .button.is-success.is-light:hover,html.theme--catppuccin-latte .button.is-success.is-light.is-hovered{background-color:#e8f8e5;border-color:transparent;color:#40a12b}html.theme--catppuccin-latte .button.is-success.is-light:active,html.theme--catppuccin-latte .button.is-success.is-light.is-active{background-color:#e0f5db;border-color:transparent;color:#40a12b}html.theme--catppuccin-latte .button.is-warning{background-color:#df8e1d;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-warning:hover,html.theme--catppuccin-latte .button.is-warning.is-hovered{background-color:#d4871c;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-warning:focus,html.theme--catppuccin-latte .button.is-warning.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-warning:focus:not(:active),html.theme--catppuccin-latte .button.is-warning.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(223,142,29,0.25)}html.theme--catppuccin-latte .button.is-warning:active,html.theme--catppuccin-latte .button.is-warning.is-active{background-color:#c8801a;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-warning[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-warning{background-color:#df8e1d;border-color:#df8e1d;box-shadow:none}html.theme--catppuccin-latte .button.is-warning.is-inverted{background-color:#fff;color:#df8e1d}html.theme--catppuccin-latte .button.is-warning.is-inverted:hover,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-latte .button.is-warning.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-warning.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#df8e1d}html.theme--catppuccin-latte .button.is-warning.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-warning.is-outlined{background-color:transparent;border-color:#df8e1d;color:#df8e1d}html.theme--catppuccin-latte .button.is-warning.is-outlined:hover,html.theme--catppuccin-latte .button.is-warning.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-warning.is-outlined:focus,html.theme--catppuccin-latte .button.is-warning.is-outlined.is-focused{background-color:#df8e1d;border-color:#df8e1d;color:#fff}html.theme--catppuccin-latte .button.is-warning.is-outlined.is-loading::after{border-color:transparent transparent #df8e1d #df8e1d !important}html.theme--catppuccin-latte .button.is-warning.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-warning.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-warning.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-warning.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-warning.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-warning.is-outlined{background-color:transparent;border-color:#df8e1d;box-shadow:none;color:#df8e1d}html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-focused{background-color:#fff;color:#df8e1d}html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #df8e1d #df8e1d !important}html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-latte .button.is-warning.is-light{background-color:#fdf6ed;color:#9e6515}html.theme--catppuccin-latte .button.is-warning.is-light:hover,html.theme--catppuccin-latte .button.is-warning.is-light.is-hovered{background-color:#fbf1e2;border-color:transparent;color:#9e6515}html.theme--catppuccin-latte .button.is-warning.is-light:active,html.theme--catppuccin-latte .button.is-warning.is-light.is-active{background-color:#faebd6;border-color:transparent;color:#9e6515}html.theme--catppuccin-latte .button.is-danger{background-color:#d20f39;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-danger:hover,html.theme--catppuccin-latte .button.is-danger.is-hovered{background-color:#c60e36;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-danger:focus,html.theme--catppuccin-latte .button.is-danger.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-danger:focus:not(:active),html.theme--catppuccin-latte .button.is-danger.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(210,15,57,0.25)}html.theme--catppuccin-latte .button.is-danger:active,html.theme--catppuccin-latte .button.is-danger.is-active{background-color:#ba0d33;border-color:transparent;color:#fff}html.theme--catppuccin-latte .button.is-danger[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-danger{background-color:#d20f39;border-color:#d20f39;box-shadow:none}html.theme--catppuccin-latte .button.is-danger.is-inverted{background-color:#fff;color:#d20f39}html.theme--catppuccin-latte .button.is-danger.is-inverted:hover,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-latte .button.is-danger.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#d20f39}html.theme--catppuccin-latte .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-danger.is-outlined{background-color:transparent;border-color:#d20f39;color:#d20f39}html.theme--catppuccin-latte .button.is-danger.is-outlined:hover,html.theme--catppuccin-latte .button.is-danger.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-danger.is-outlined:focus,html.theme--catppuccin-latte .button.is-danger.is-outlined.is-focused{background-color:#d20f39;border-color:#d20f39;color:#fff}html.theme--catppuccin-latte .button.is-danger.is-outlined.is-loading::after{border-color:transparent transparent #d20f39 #d20f39 !important}html.theme--catppuccin-latte .button.is-danger.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-danger.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-danger.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-danger.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-latte .button.is-danger.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-danger.is-outlined{background-color:transparent;border-color:#d20f39;box-shadow:none;color:#d20f39}html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined:hover,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined:focus,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-focused{background-color:#fff;color:#d20f39}html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #d20f39 #d20f39 !important}html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-latte .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-latte .button.is-danger.is-light{background-color:#feecf0;color:#e9113f}html.theme--catppuccin-latte .button.is-danger.is-light:hover,html.theme--catppuccin-latte .button.is-danger.is-light.is-hovered{background-color:#fde0e6;border-color:transparent;color:#e9113f}html.theme--catppuccin-latte .button.is-danger.is-light:active,html.theme--catppuccin-latte .button.is-danger.is-light.is-active{background-color:#fcd4dd;border-color:transparent;color:#e9113f}html.theme--catppuccin-latte .button.is-small,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.button{font-size:.75rem}html.theme--catppuccin-latte .button.is-small:not(.is-rounded),html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.button:not(.is-rounded){border-radius:3px}html.theme--catppuccin-latte .button.is-normal{font-size:1rem}html.theme--catppuccin-latte .button.is-medium{font-size:1.25rem}html.theme--catppuccin-latte .button.is-large{font-size:1.5rem}html.theme--catppuccin-latte .button[disabled],fieldset[disabled] html.theme--catppuccin-latte .button{background-color:#9ca0b0;border-color:#acb0be;box-shadow:none;opacity:.5}html.theme--catppuccin-latte .button.is-fullwidth{display:flex;width:100%}html.theme--catppuccin-latte .button.is-loading{color:transparent !important;pointer-events:none}html.theme--catppuccin-latte .button.is-loading::after{position:absolute;left:calc(50% - (1em * 0.5));top:calc(50% - (1em * 0.5));position:absolute !important}html.theme--catppuccin-latte .button.is-static{background-color:#e6e9ef;border-color:#acb0be;color:#8c8fa1;box-shadow:none;pointer-events:none}html.theme--catppuccin-latte .button.is-rounded,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.button{border-radius:9999px;padding-left:calc(1em + 0.25em);padding-right:calc(1em + 0.25em)}html.theme--catppuccin-latte .buttons{align-items:center;display:flex;flex-wrap:wrap;justify-content:flex-start}html.theme--catppuccin-latte .buttons .button{margin-bottom:0.5rem}html.theme--catppuccin-latte .buttons .button:not(:last-child):not(.is-fullwidth){margin-right:.5rem}html.theme--catppuccin-latte .buttons:last-child{margin-bottom:-0.5rem}html.theme--catppuccin-latte .buttons:not(:last-child){margin-bottom:1rem}html.theme--catppuccin-latte .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large){font-size:.75rem}html.theme--catppuccin-latte .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large):not(.is-rounded){border-radius:3px}html.theme--catppuccin-latte .buttons.are-medium .button:not(.is-small):not(.is-normal):not(.is-large){font-size:1.25rem}html.theme--catppuccin-latte .buttons.are-large .button:not(.is-small):not(.is-normal):not(.is-medium){font-size:1.5rem}html.theme--catppuccin-latte .buttons.has-addons .button:not(:first-child){border-bottom-left-radius:0;border-top-left-radius:0}html.theme--catppuccin-latte .buttons.has-addons .button:not(:last-child){border-bottom-right-radius:0;border-top-right-radius:0;margin-right:-1px}html.theme--catppuccin-latte .buttons.has-addons .button:last-child{margin-right:0}html.theme--catppuccin-latte .buttons.has-addons .button:hover,html.theme--catppuccin-latte .buttons.has-addons .button.is-hovered{z-index:2}html.theme--catppuccin-latte .buttons.has-addons .button:focus,html.theme--catppuccin-latte .buttons.has-addons .button.is-focused,html.theme--catppuccin-latte .buttons.has-addons .button:active,html.theme--catppuccin-latte .buttons.has-addons .button.is-active,html.theme--catppuccin-latte .buttons.has-addons .button.is-selected{z-index:3}html.theme--catppuccin-latte .buttons.has-addons .button:focus:hover,html.theme--catppuccin-latte .buttons.has-addons .button.is-focused:hover,html.theme--catppuccin-latte .buttons.has-addons .button:active:hover,html.theme--catppuccin-latte .buttons.has-addons .button.is-active:hover,html.theme--catppuccin-latte .buttons.has-addons .button.is-selected:hover{z-index:4}html.theme--catppuccin-latte .buttons.has-addons .button.is-expanded{flex-grow:1;flex-shrink:1}html.theme--catppuccin-latte .buttons.is-centered{justify-content:center}html.theme--catppuccin-latte .buttons.is-centered:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--catppuccin-latte .buttons.is-right{justify-content:flex-end}html.theme--catppuccin-latte .buttons.is-right:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}@media screen and (max-width: 768px){html.theme--catppuccin-latte .button.is-responsive.is-small,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.5625rem}html.theme--catppuccin-latte .button.is-responsive,html.theme--catppuccin-latte .button.is-responsive.is-normal{font-size:.65625rem}html.theme--catppuccin-latte .button.is-responsive.is-medium{font-size:.75rem}html.theme--catppuccin-latte .button.is-responsive.is-large{font-size:1rem}}@media screen and (min-width: 769px) and (max-width: 1055px){html.theme--catppuccin-latte .button.is-responsive.is-small,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.65625rem}html.theme--catppuccin-latte .button.is-responsive,html.theme--catppuccin-latte .button.is-responsive.is-normal{font-size:.75rem}html.theme--catppuccin-latte .button.is-responsive.is-medium{font-size:1rem}html.theme--catppuccin-latte .button.is-responsive.is-large{font-size:1.25rem}}html.theme--catppuccin-latte .container{flex-grow:1;margin:0 auto;position:relative;width:auto}html.theme--catppuccin-latte .container.is-fluid{max-width:none !important;padding-left:32px;padding-right:32px;width:100%}@media screen and (min-width: 1056px){html.theme--catppuccin-latte .container{max-width:992px}}@media screen and (max-width: 1215px){html.theme--catppuccin-latte .container.is-widescreen:not(.is-max-desktop){max-width:1152px}}@media screen and (max-width: 1407px){html.theme--catppuccin-latte .container.is-fullhd:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}@media screen and (min-width: 1216px){html.theme--catppuccin-latte .container:not(.is-max-desktop){max-width:1152px}}@media screen and (min-width: 1408px){html.theme--catppuccin-latte .container:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}html.theme--catppuccin-latte .content li+li{margin-top:0.25em}html.theme--catppuccin-latte .content p:not(:last-child),html.theme--catppuccin-latte .content dl:not(:last-child),html.theme--catppuccin-latte .content ol:not(:last-child),html.theme--catppuccin-latte .content ul:not(:last-child),html.theme--catppuccin-latte .content blockquote:not(:last-child),html.theme--catppuccin-latte .content pre:not(:last-child),html.theme--catppuccin-latte .content table:not(:last-child){margin-bottom:1em}html.theme--catppuccin-latte .content h1,html.theme--catppuccin-latte .content h2,html.theme--catppuccin-latte .content h3,html.theme--catppuccin-latte .content h4,html.theme--catppuccin-latte .content h5,html.theme--catppuccin-latte .content h6{color:#4c4f69;font-weight:600;line-height:1.125}html.theme--catppuccin-latte .content h1{font-size:2em;margin-bottom:0.5em}html.theme--catppuccin-latte .content h1:not(:first-child){margin-top:1em}html.theme--catppuccin-latte .content h2{font-size:1.75em;margin-bottom:0.5714em}html.theme--catppuccin-latte .content h2:not(:first-child){margin-top:1.1428em}html.theme--catppuccin-latte .content h3{font-size:1.5em;margin-bottom:0.6666em}html.theme--catppuccin-latte .content h3:not(:first-child){margin-top:1.3333em}html.theme--catppuccin-latte .content h4{font-size:1.25em;margin-bottom:0.8em}html.theme--catppuccin-latte .content h5{font-size:1.125em;margin-bottom:0.8888em}html.theme--catppuccin-latte .content h6{font-size:1em;margin-bottom:1em}html.theme--catppuccin-latte .content blockquote{background-color:#e6e9ef;border-left:5px solid #acb0be;padding:1.25em 1.5em}html.theme--catppuccin-latte .content ol{list-style-position:outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-latte .content ol:not([type]){list-style-type:decimal}html.theme--catppuccin-latte .content ol.is-lower-alpha:not([type]){list-style-type:lower-alpha}html.theme--catppuccin-latte .content ol.is-lower-roman:not([type]){list-style-type:lower-roman}html.theme--catppuccin-latte .content ol.is-upper-alpha:not([type]){list-style-type:upper-alpha}html.theme--catppuccin-latte .content ol.is-upper-roman:not([type]){list-style-type:upper-roman}html.theme--catppuccin-latte .content ul{list-style:disc outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-latte .content ul ul{list-style-type:circle;margin-top:0.5em}html.theme--catppuccin-latte .content ul ul ul{list-style-type:square}html.theme--catppuccin-latte .content dd{margin-left:2em}html.theme--catppuccin-latte .content figure{margin-left:2em;margin-right:2em;text-align:center}html.theme--catppuccin-latte .content figure:not(:first-child){margin-top:2em}html.theme--catppuccin-latte .content figure:not(:last-child){margin-bottom:2em}html.theme--catppuccin-latte .content figure img{display:inline-block}html.theme--catppuccin-latte .content figure figcaption{font-style:italic}html.theme--catppuccin-latte .content pre{-webkit-overflow-scrolling:touch;overflow-x:auto;padding:0;white-space:pre;word-wrap:normal}html.theme--catppuccin-latte .content sup,html.theme--catppuccin-latte .content sub{font-size:75%}html.theme--catppuccin-latte .content table{width:100%}html.theme--catppuccin-latte .content table td,html.theme--catppuccin-latte .content table th{border:1px solid #acb0be;border-width:0 0 1px;padding:0.5em 0.75em;vertical-align:top}html.theme--catppuccin-latte .content table th{color:#41445a}html.theme--catppuccin-latte .content table 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#documenter .docs-sidebar form.docs-search>input.file{font-size:.75rem}html.theme--catppuccin-latte .file.is-normal{font-size:1rem}html.theme--catppuccin-latte .file.is-medium{font-size:1.25rem}html.theme--catppuccin-latte .file.is-medium .file-icon .fa{font-size:21px}html.theme--catppuccin-latte .file.is-large{font-size:1.5rem}html.theme--catppuccin-latte .file.is-large .file-icon .fa{font-size:28px}html.theme--catppuccin-latte .file.has-name .file-cta{border-bottom-right-radius:0;border-top-right-radius:0}html.theme--catppuccin-latte .file.has-name .file-name{border-bottom-left-radius:0;border-top-left-radius:0}html.theme--catppuccin-latte .file.has-name.is-empty .file-cta{border-radius:.4em}html.theme--catppuccin-latte .file.has-name.is-empty .file-name{display:none}html.theme--catppuccin-latte .file.is-boxed .file-label{flex-direction:column}html.theme--catppuccin-latte .file.is-boxed .file-cta{flex-direction:column;height:auto;padding:1em 3em}html.theme--catppuccin-latte .file.is-boxed .file-name{border-width:0 1px 1px}html.theme--catppuccin-latte .file.is-boxed .file-icon{height:1.5em;width:1.5em}html.theme--catppuccin-latte .file.is-boxed .file-icon .fa{font-size:21px}html.theme--catppuccin-latte .file.is-boxed.is-small .file-icon .fa,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.is-boxed .file-icon .fa{font-size:14px}html.theme--catppuccin-latte .file.is-boxed.is-medium .file-icon .fa{font-size:28px}html.theme--catppuccin-latte .file.is-boxed.is-large .file-icon .fa{font-size:35px}html.theme--catppuccin-latte .file.is-boxed.has-name .file-cta{border-radius:.4em .4em 0 0}html.theme--catppuccin-latte .file.is-boxed.has-name .file-name{border-radius:0 0 .4em .4em;border-width:0 1px 1px}html.theme--catppuccin-latte .file.is-centered{justify-content:center}html.theme--catppuccin-latte .file.is-fullwidth .file-label{width:100%}html.theme--catppuccin-latte .file.is-fullwidth .file-name{flex-grow:1;max-width:none}html.theme--catppuccin-latte .file.is-right{justify-content:flex-end}html.theme--catppuccin-latte .file.is-right .file-cta{border-radius:0 .4em .4em 0}html.theme--catppuccin-latte .file.is-right .file-name{border-radius:.4em 0 0 .4em;border-width:1px 0 1px 1px;order:-1}html.theme--catppuccin-latte .file-label{align-items:stretch;display:flex;cursor:pointer;justify-content:flex-start;overflow:hidden;position:relative}html.theme--catppuccin-latte .file-label:hover .file-cta{background-color:#c5c9d5;color:#41445a}html.theme--catppuccin-latte .file-label:hover .file-name{border-color:#a5a9b8}html.theme--catppuccin-latte .file-label:active .file-cta{background-color:#bdc2cf;color:#41445a}html.theme--catppuccin-latte .file-label:active .file-name{border-color:#9ea2b3}html.theme--catppuccin-latte .file-input{height:100%;left:0;opacity:0;outline:none;position:absolute;top:0;width:100%}html.theme--catppuccin-latte .file-cta,html.theme--catppuccin-latte .file-name{border-color:#acb0be;border-radius:.4em;font-size:1em;padding-left:1em;padding-right:1em;white-space:nowrap}html.theme--catppuccin-latte .file-cta{background-color:#ccd0da;color:#4c4f69}html.theme--catppuccin-latte .file-name{border-color:#acb0be;border-style:solid;border-width:1px 1px 1px 0;display:block;max-width:16em;overflow:hidden;text-align:inherit;text-overflow:ellipsis}html.theme--catppuccin-latte .file-icon{align-items:center;display:flex;height:1em;justify-content:center;margin-right:.5em;width:1em}html.theme--catppuccin-latte .file-icon .fa{font-size:14px}html.theme--catppuccin-latte .label{color:#41445a;display:block;font-size:1rem;font-weight:700}html.theme--catppuccin-latte .label:not(:last-child){margin-bottom:0.5em}html.theme--catppuccin-latte .label.is-small,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.label{font-size:.75rem}html.theme--catppuccin-latte .label.is-medium{font-size:1.25rem}html.theme--catppuccin-latte .label.is-large{font-size:1.5rem}html.theme--catppuccin-latte .help{display:block;font-size:.75rem;margin-top:0.25rem}html.theme--catppuccin-latte .help.is-white{color:#fff}html.theme--catppuccin-latte .help.is-black{color:#0a0a0a}html.theme--catppuccin-latte .help.is-light{color:#f5f5f5}html.theme--catppuccin-latte .help.is-dark,html.theme--catppuccin-latte .content kbd.help{color:#ccd0da}html.theme--catppuccin-latte .help.is-primary,html.theme--catppuccin-latte .docstring>section>a.help.docs-sourcelink{color:#1e66f5}html.theme--catppuccin-latte .help.is-link{color:#1e66f5}html.theme--catppuccin-latte .help.is-info{color:#179299}html.theme--catppuccin-latte .help.is-success{color:#40a02b}html.theme--catppuccin-latte .help.is-warning{color:#df8e1d}html.theme--catppuccin-latte .help.is-danger{color:#d20f39}html.theme--catppuccin-latte .field:not(:last-child){margin-bottom:0.75rem}html.theme--catppuccin-latte .field.has-addons{display:flex;justify-content:flex-start}html.theme--catppuccin-latte .field.has-addons .control:not(:last-child){margin-right:-1px}html.theme--catppuccin-latte .field.has-addons .control:not(:first-child):not(:last-child) .button,html.theme--catppuccin-latte .field.has-addons .control:not(:first-child):not(:last-child) .input,html.theme--catppuccin-latte .field.has-addons .control:not(:first-child):not(:last-child) #documenter .docs-sidebar form.docs-search>input,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control:not(:first-child):not(:last-child) form.docs-search>input,html.theme--catppuccin-latte .field.has-addons .control:not(:first-child):not(:last-child) .select select{border-radius:0}html.theme--catppuccin-latte .field.has-addons .control:first-child:not(:only-child) .button,html.theme--catppuccin-latte .field.has-addons .control:first-child:not(:only-child) .input,html.theme--catppuccin-latte .field.has-addons .control:first-child:not(:only-child) #documenter .docs-sidebar form.docs-search>input,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control:first-child:not(:only-child) form.docs-search>input,html.theme--catppuccin-latte .field.has-addons .control:first-child:not(:only-child) .select select{border-bottom-right-radius:0;border-top-right-radius:0}html.theme--catppuccin-latte .field.has-addons .control:last-child:not(:only-child) .button,html.theme--catppuccin-latte .field.has-addons .control:last-child:not(:only-child) .input,html.theme--catppuccin-latte .field.has-addons .control:last-child:not(:only-child) #documenter .docs-sidebar form.docs-search>input,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control:last-child:not(:only-child) form.docs-search>input,html.theme--catppuccin-latte .field.has-addons .control:last-child:not(:only-child) .select select{border-bottom-left-radius:0;border-top-left-radius:0}html.theme--catppuccin-latte .field.has-addons .control .button:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .button.is-hovered:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .input:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input:not([disabled]):hover,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .input.is-hovered:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input.is-hovered:not([disabled]),html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input.is-hovered:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .select select:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .select select.is-hovered:not([disabled]){z-index:2}html.theme--catppuccin-latte .field.has-addons .control .button:not([disabled]):focus,html.theme--catppuccin-latte .field.has-addons .control .button.is-focused:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .button:not([disabled]):active,html.theme--catppuccin-latte .field.has-addons .control .button.is-active:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .input:not([disabled]):focus,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input:not([disabled]):focus,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input:not([disabled]):focus,html.theme--catppuccin-latte .field.has-addons .control .input.is-focused:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input.is-focused:not([disabled]),html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input.is-focused:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .input:not([disabled]):active,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input:not([disabled]):active,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input:not([disabled]):active,html.theme--catppuccin-latte .field.has-addons .control .input.is-active:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input.is-active:not([disabled]),html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input.is-active:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .select select:not([disabled]):focus,html.theme--catppuccin-latte .field.has-addons .control .select select.is-focused:not([disabled]),html.theme--catppuccin-latte .field.has-addons .control .select select:not([disabled]):active,html.theme--catppuccin-latte .field.has-addons .control .select select.is-active:not([disabled]){z-index:3}html.theme--catppuccin-latte .field.has-addons .control .button:not([disabled]):focus:hover,html.theme--catppuccin-latte .field.has-addons .control .button.is-focused:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .button:not([disabled]):active:hover,html.theme--catppuccin-latte .field.has-addons .control .button.is-active:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .input:not([disabled]):focus:hover,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input:not([disabled]):focus:hover,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input:not([disabled]):focus:hover,html.theme--catppuccin-latte .field.has-addons .control .input.is-focused:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input.is-focused:not([disabled]):hover,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input.is-focused:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .input:not([disabled]):active:hover,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input:not([disabled]):active:hover,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input:not([disabled]):active:hover,html.theme--catppuccin-latte .field.has-addons .control .input.is-active:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control #documenter .docs-sidebar form.docs-search>input.is-active:not([disabled]):hover,html.theme--catppuccin-latte #documenter .docs-sidebar .field.has-addons .control form.docs-search>input.is-active:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .select select:not([disabled]):focus:hover,html.theme--catppuccin-latte .field.has-addons .control .select select.is-focused:not([disabled]):hover,html.theme--catppuccin-latte .field.has-addons .control .select select:not([disabled]):active:hover,html.theme--catppuccin-latte .field.has-addons .control .select select.is-active:not([disabled]):hover{z-index:4}html.theme--catppuccin-latte .field.has-addons .control.is-expanded{flex-grow:1;flex-shrink:1}html.theme--catppuccin-latte .field.has-addons.has-addons-centered{justify-content:center}html.theme--catppuccin-latte .field.has-addons.has-addons-right{justify-content:flex-end}html.theme--catppuccin-latte .field.has-addons.has-addons-fullwidth .control{flex-grow:1;flex-shrink:0}html.theme--catppuccin-latte .field.is-grouped{display:flex;justify-content:flex-start}html.theme--catppuccin-latte .field.is-grouped>.control{flex-shrink:0}html.theme--catppuccin-latte .field.is-grouped>.control:not(:last-child){margin-bottom:0;margin-right:.75rem}html.theme--catppuccin-latte .field.is-grouped>.control.is-expanded{flex-grow:1;flex-shrink:1}html.theme--catppuccin-latte .field.is-grouped.is-grouped-centered{justify-content:center}html.theme--catppuccin-latte .field.is-grouped.is-grouped-right{justify-content:flex-end}html.theme--catppuccin-latte .field.is-grouped.is-grouped-multiline{flex-wrap:wrap}html.theme--catppuccin-latte .field.is-grouped.is-grouped-multiline>.control:last-child,html.theme--catppuccin-latte .field.is-grouped.is-grouped-multiline>.control:not(:last-child){margin-bottom:0.75rem}html.theme--catppuccin-latte .field.is-grouped.is-grouped-multiline:last-child{margin-bottom:-0.75rem}html.theme--catppuccin-latte .field.is-grouped.is-grouped-multiline:not(:last-child){margin-bottom:0}@media screen and (min-width: 769px),print{html.theme--catppuccin-latte .field.is-horizontal{display:flex}}html.theme--catppuccin-latte .field-label .label{font-size:inherit}@media screen and (max-width: 768px){html.theme--catppuccin-latte .field-label{margin-bottom:0.5rem}}@media screen and (min-width: 769px),print{html.theme--catppuccin-latte .field-label{flex-basis:0;flex-grow:1;flex-shrink:0;margin-right:1.5rem;text-align:right}html.theme--catppuccin-latte .field-label.is-small,html.theme--catppuccin-latte #documenter .docs-sidebar form.docs-search>input.field-label{font-size:.75rem;padding-top:0.375em}html.theme--catppuccin-latte .field-label.is-normal{padding-top:0.375em}html.theme--catppuccin-latte .field-label.is-medium{font-size:1.25rem;padding-top:0.375em}html.theme--catppuccin-latte .field-label.is-large{font-size:1.5rem;padding-top:0.375em}}html.theme--catppuccin-latte .field-body .field .field{margin-bottom:0}@media screen and (min-width: 769px),print{html.theme--catppuccin-latte .field-body{display:flex;flex-basis:0;flex-grow:5;flex-shrink:1}html.theme--catppuccin-latte .field-body .field{margin-bottom:0}html.theme--catppuccin-latte .field-body>.field{flex-shrink:1}html.theme--catppuccin-latte .field-body>.field:not(.is-narrow){flex-grow:1}html.theme--catppuccin-latte .field-body>.field:not(:last-child){margin-right:.75rem}}html.theme--catppuccin-latte .control{box-sizing:border-box;clear:both;font-size:1rem;position:relative;text-align:inherit}html.theme--catppuccin-latte .control.has-icons-left .input:focus~.icon,html.theme--catppuccin-latte .control.has-icons-left #documenter .docs-sidebar form.docs-search>input:focus~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-left form.docs-search>input:focus~.icon,html.theme--catppuccin-latte .control.has-icons-left .select:focus~.icon,html.theme--catppuccin-latte .control.has-icons-right .input:focus~.icon,html.theme--catppuccin-latte .control.has-icons-right #documenter .docs-sidebar form.docs-search>input:focus~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-right form.docs-search>input:focus~.icon,html.theme--catppuccin-latte .control.has-icons-right .select:focus~.icon{color:#ccd0da}html.theme--catppuccin-latte .control.has-icons-left .input.is-small~.icon,html.theme--catppuccin-latte .control.has-icons-left #documenter .docs-sidebar form.docs-search>input~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-left form.docs-search>input~.icon,html.theme--catppuccin-latte .control.has-icons-left .select.is-small~.icon,html.theme--catppuccin-latte .control.has-icons-right .input.is-small~.icon,html.theme--catppuccin-latte .control.has-icons-right #documenter .docs-sidebar form.docs-search>input~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-right form.docs-search>input~.icon,html.theme--catppuccin-latte .control.has-icons-right .select.is-small~.icon{font-size:.75rem}html.theme--catppuccin-latte .control.has-icons-left .input.is-medium~.icon,html.theme--catppuccin-latte .control.has-icons-left #documenter .docs-sidebar form.docs-search>input.is-medium~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-left form.docs-search>input.is-medium~.icon,html.theme--catppuccin-latte .control.has-icons-left .select.is-medium~.icon,html.theme--catppuccin-latte .control.has-icons-right .input.is-medium~.icon,html.theme--catppuccin-latte .control.has-icons-right #documenter .docs-sidebar form.docs-search>input.is-medium~.icon,html.theme--catppuccin-latte #documenter .docs-sidebar .control.has-icons-right form.docs-search>input.is-medium~.icon,html.theme--catppuccin-latte .control.has-icons-right .select.is-medium~.icon{font-size:1.25rem}html.theme--catppuccin-latte .control.has-icons-left 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kbd.button.is-outlined{background-color:transparent;border-color:#363a4f;box-shadow:none;color:#363a4f}html.theme--catppuccin-macchiato .button.is-dark.is-inverted.is-outlined,html.theme--catppuccin-macchiato .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-macchiato .button.is-dark.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .content kbd.button.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-dark.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .content kbd.button.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-dark.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .content kbd.button.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-dark.is-inverted.is-outlined.is-focused,html.theme--catppuccin-macchiato .content 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.button.is-info.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-info.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-focused{background-color:#8bd5ca;border-color:#8bd5ca;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-loading::after{border-color:transparent transparent #8bd5ca #8bd5ca !important}html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-info.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-macchiato .button.is-info.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-info.is-outlined{background-color:transparent;border-color:#8bd5ca;box-shadow:none;color:#8bd5ca}html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#8bd5ca}html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #8bd5ca #8bd5ca !important}html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-info.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-info.is-light{background-color:#f0faf8;color:#276d62}html.theme--catppuccin-macchiato .button.is-info.is-light:hover,html.theme--catppuccin-macchiato .button.is-info.is-light.is-hovered{background-color:#e7f6f4;border-color:transparent;color:#276d62}html.theme--catppuccin-macchiato .button.is-info.is-light:active,html.theme--catppuccin-macchiato .button.is-info.is-light.is-active{background-color:#ddf3f0;border-color:transparent;color:#276d62}html.theme--catppuccin-macchiato .button.is-success{background-color:#a6da95;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success:hover,html.theme--catppuccin-macchiato .button.is-success.is-hovered{background-color:#9ed78c;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success:focus,html.theme--catppuccin-macchiato .button.is-success.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success:focus:not(:active),html.theme--catppuccin-macchiato .button.is-success.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(166,218,149,0.25)}html.theme--catppuccin-macchiato .button.is-success:active,html.theme--catppuccin-macchiato .button.is-success.is-active{background-color:#96d382;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-success{background-color:#a6da95;border-color:#a6da95;box-shadow:none}html.theme--catppuccin-macchiato .button.is-success.is-inverted{background-color:rgba(0,0,0,0.7);color:#a6da95}html.theme--catppuccin-macchiato .button.is-success.is-inverted:hover,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-success.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#a6da95}html.theme--catppuccin-macchiato .button.is-success.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-macchiato .button.is-success.is-outlined{background-color:transparent;border-color:#a6da95;color:#a6da95}html.theme--catppuccin-macchiato .button.is-success.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-success.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-focused{background-color:#a6da95;border-color:#a6da95;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-loading::after{border-color:transparent transparent #a6da95 #a6da95 !important}html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-success.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-macchiato .button.is-success.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-success.is-outlined{background-color:transparent;border-color:#a6da95;box-shadow:none;color:#a6da95}html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#a6da95}html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #a6da95 #a6da95 !important}html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-success.is-light{background-color:#f2faf0;color:#386e26}html.theme--catppuccin-macchiato .button.is-success.is-light:hover,html.theme--catppuccin-macchiato .button.is-success.is-light.is-hovered{background-color:#eaf6e6;border-color:transparent;color:#386e26}html.theme--catppuccin-macchiato .button.is-success.is-light:active,html.theme--catppuccin-macchiato .button.is-success.is-light.is-active{background-color:#e2f3dd;border-color:transparent;color:#386e26}html.theme--catppuccin-macchiato .button.is-warning{background-color:#eed49f;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning:hover,html.theme--catppuccin-macchiato .button.is-warning.is-hovered{background-color:#eccf94;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning:focus,html.theme--catppuccin-macchiato .button.is-warning.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning:focus:not(:active),html.theme--catppuccin-macchiato .button.is-warning.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(238,212,159,0.25)}html.theme--catppuccin-macchiato .button.is-warning:active,html.theme--catppuccin-macchiato .button.is-warning.is-active{background-color:#eaca89;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-warning{background-color:#eed49f;border-color:#eed49f;box-shadow:none}html.theme--catppuccin-macchiato .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);color:#eed49f}html.theme--catppuccin-macchiato .button.is-warning.is-inverted:hover,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#eed49f}html.theme--catppuccin-macchiato .button.is-warning.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-macchiato .button.is-warning.is-outlined{background-color:transparent;border-color:#eed49f;color:#eed49f}html.theme--catppuccin-macchiato .button.is-warning.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-warning.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-focused{background-color:#eed49f;border-color:#eed49f;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-loading::after{border-color:transparent transparent #eed49f #eed49f !important}html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-warning.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-macchiato .button.is-warning.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-warning.is-outlined{background-color:transparent;border-color:#eed49f;box-shadow:none;color:#eed49f}html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#eed49f}html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #eed49f #eed49f !important}html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-macchiato .button.is-warning.is-light{background-color:#fcf7ee;color:#7e5c16}html.theme--catppuccin-macchiato .button.is-warning.is-light:hover,html.theme--catppuccin-macchiato .button.is-warning.is-light.is-hovered{background-color:#faf2e3;border-color:transparent;color:#7e5c16}html.theme--catppuccin-macchiato .button.is-warning.is-light:active,html.theme--catppuccin-macchiato .button.is-warning.is-light.is-active{background-color:#f8eed8;border-color:transparent;color:#7e5c16}html.theme--catppuccin-macchiato .button.is-danger{background-color:#ed8796;border-color:transparent;color:#fff}html.theme--catppuccin-macchiato .button.is-danger:hover,html.theme--catppuccin-macchiato .button.is-danger.is-hovered{background-color:#eb7c8c;border-color:transparent;color:#fff}html.theme--catppuccin-macchiato .button.is-danger:focus,html.theme--catppuccin-macchiato .button.is-danger.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-macchiato .button.is-danger:focus:not(:active),html.theme--catppuccin-macchiato .button.is-danger.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(237,135,150,0.25)}html.theme--catppuccin-macchiato .button.is-danger:active,html.theme--catppuccin-macchiato .button.is-danger.is-active{background-color:#ea7183;border-color:transparent;color:#fff}html.theme--catppuccin-macchiato .button.is-danger[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-danger{background-color:#ed8796;border-color:#ed8796;box-shadow:none}html.theme--catppuccin-macchiato .button.is-danger.is-inverted{background-color:#fff;color:#ed8796}html.theme--catppuccin-macchiato .button.is-danger.is-inverted:hover,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-macchiato .button.is-danger.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#ed8796}html.theme--catppuccin-macchiato .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-macchiato .button.is-danger.is-outlined{background-color:transparent;border-color:#ed8796;color:#ed8796}html.theme--catppuccin-macchiato .button.is-danger.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-danger.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-focused{background-color:#ed8796;border-color:#ed8796;color:#fff}html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-loading::after{border-color:transparent transparent #ed8796 #ed8796 !important}html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-danger.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-macchiato .button.is-danger.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-danger.is-outlined{background-color:transparent;border-color:#ed8796;box-shadow:none;color:#ed8796}html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined:hover,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined:focus,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-focused{background-color:#fff;color:#ed8796}html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #ed8796 #ed8796 !important}html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-macchiato .button.is-danger.is-light{background-color:#fcedef;color:#971729}html.theme--catppuccin-macchiato .button.is-danger.is-light:hover,html.theme--catppuccin-macchiato .button.is-danger.is-light.is-hovered{background-color:#fbe2e6;border-color:transparent;color:#971729}html.theme--catppuccin-macchiato .button.is-danger.is-light:active,html.theme--catppuccin-macchiato .button.is-danger.is-light.is-active{background-color:#f9d7dc;border-color:transparent;color:#971729}html.theme--catppuccin-macchiato .button.is-small,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.button{font-size:.75rem}html.theme--catppuccin-macchiato .button.is-small:not(.is-rounded),html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.button:not(.is-rounded){border-radius:3px}html.theme--catppuccin-macchiato .button.is-normal{font-size:1rem}html.theme--catppuccin-macchiato .button.is-medium{font-size:1.25rem}html.theme--catppuccin-macchiato .button.is-large{font-size:1.5rem}html.theme--catppuccin-macchiato .button[disabled],fieldset[disabled] html.theme--catppuccin-macchiato .button{background-color:#6e738d;border-color:#5b6078;box-shadow:none;opacity:.5}html.theme--catppuccin-macchiato .button.is-fullwidth{display:flex;width:100%}html.theme--catppuccin-macchiato .button.is-loading{color:transparent !important;pointer-events:none}html.theme--catppuccin-macchiato .button.is-loading::after{position:absolute;left:calc(50% - (1em * 0.5));top:calc(50% - (1em * 0.5));position:absolute !important}html.theme--catppuccin-macchiato .button.is-static{background-color:#1e2030;border-color:#5b6078;color:#8087a2;box-shadow:none;pointer-events:none}html.theme--catppuccin-macchiato .button.is-rounded,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.button{border-radius:9999px;padding-left:calc(1em + 0.25em);padding-right:calc(1em + 0.25em)}html.theme--catppuccin-macchiato .buttons{align-items:center;display:flex;flex-wrap:wrap;justify-content:flex-start}html.theme--catppuccin-macchiato .buttons .button{margin-bottom:0.5rem}html.theme--catppuccin-macchiato .buttons .button:not(:last-child):not(.is-fullwidth){margin-right:.5rem}html.theme--catppuccin-macchiato .buttons:last-child{margin-bottom:-0.5rem}html.theme--catppuccin-macchiato .buttons:not(:last-child){margin-bottom:1rem}html.theme--catppuccin-macchiato .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large){font-size:.75rem}html.theme--catppuccin-macchiato .buttons.are-small 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.container:not(.is-max-desktop){max-width:1152px}}@media screen and (min-width: 1408px){html.theme--catppuccin-macchiato .container:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}html.theme--catppuccin-macchiato .content li+li{margin-top:0.25em}html.theme--catppuccin-macchiato .content p:not(:last-child),html.theme--catppuccin-macchiato .content dl:not(:last-child),html.theme--catppuccin-macchiato .content ol:not(:last-child),html.theme--catppuccin-macchiato .content ul:not(:last-child),html.theme--catppuccin-macchiato .content blockquote:not(:last-child),html.theme--catppuccin-macchiato .content pre:not(:last-child),html.theme--catppuccin-macchiato .content table:not(:last-child){margin-bottom:1em}html.theme--catppuccin-macchiato .content h1,html.theme--catppuccin-macchiato .content h2,html.theme--catppuccin-macchiato .content h3,html.theme--catppuccin-macchiato .content h4,html.theme--catppuccin-macchiato .content h5,html.theme--catppuccin-macchiato .content 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ol{list-style-position:outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-macchiato .content ol:not([type]){list-style-type:decimal}html.theme--catppuccin-macchiato .content ol.is-lower-alpha:not([type]){list-style-type:lower-alpha}html.theme--catppuccin-macchiato .content ol.is-lower-roman:not([type]){list-style-type:lower-roman}html.theme--catppuccin-macchiato .content ol.is-upper-alpha:not([type]){list-style-type:upper-alpha}html.theme--catppuccin-macchiato .content ol.is-upper-roman:not([type]){list-style-type:upper-roman}html.theme--catppuccin-macchiato .content ul{list-style:disc outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-macchiato .content ul ul{list-style-type:circle;margin-top:0.5em}html.theme--catppuccin-macchiato .content ul ul ul{list-style-type:square}html.theme--catppuccin-macchiato .content dd{margin-left:2em}html.theme--catppuccin-macchiato .content figure{margin-left:2em;margin-right:2em;text-align:center}html.theme--catppuccin-macchiato 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form.docs-search>input.is-active{box-shadow:0 0 0 0.125em rgba(255,255,255,0.25)}html.theme--catppuccin-macchiato .is-black.textarea,html.theme--catppuccin-macchiato .is-black.input,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.is-black{border-color:#0a0a0a}html.theme--catppuccin-macchiato .is-black.textarea:focus,html.theme--catppuccin-macchiato .is-black.input:focus,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.is-black:focus,html.theme--catppuccin-macchiato .is-black.is-focused.textarea,html.theme--catppuccin-macchiato .is-black.is-focused.input,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.is-focused,html.theme--catppuccin-macchiato .is-black.textarea:active,html.theme--catppuccin-macchiato .is-black.input:active,html.theme--catppuccin-macchiato #documenter .docs-sidebar form.docs-search>input.is-black:active,html.theme--catppuccin-macchiato 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html.theme--catppuccin-mocha .button.is-link.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-mocha .button.is-link.is-light{background-color:#ebf3fe;color:#063c93}html.theme--catppuccin-mocha .button.is-link.is-light:hover,html.theme--catppuccin-mocha .button.is-link.is-light.is-hovered{background-color:#dfebfe;border-color:transparent;color:#063c93}html.theme--catppuccin-mocha .button.is-link.is-light:active,html.theme--catppuccin-mocha .button.is-link.is-light.is-active{background-color:#d3e3fd;border-color:transparent;color:#063c93}html.theme--catppuccin-mocha .button.is-info{background-color:#94e2d5;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info:hover,html.theme--catppuccin-mocha .button.is-info.is-hovered{background-color:#8adfd1;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info:focus,html.theme--catppuccin-mocha .button.is-info.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info:focus:not(:active),html.theme--catppuccin-mocha .button.is-info.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(148,226,213,0.25)}html.theme--catppuccin-mocha .button.is-info:active,html.theme--catppuccin-mocha .button.is-info.is-active{background-color:#80ddcd;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-info{background-color:#94e2d5;border-color:#94e2d5;box-shadow:none}html.theme--catppuccin-mocha .button.is-info.is-inverted{background-color:rgba(0,0,0,0.7);color:#94e2d5}html.theme--catppuccin-mocha .button.is-info.is-inverted:hover,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-info.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#94e2d5}html.theme--catppuccin-mocha .button.is-info.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-info.is-outlined{background-color:transparent;border-color:#94e2d5;color:#94e2d5}html.theme--catppuccin-mocha .button.is-info.is-outlined:hover,html.theme--catppuccin-mocha .button.is-info.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-info.is-outlined:focus,html.theme--catppuccin-mocha .button.is-info.is-outlined.is-focused{background-color:#94e2d5;border-color:#94e2d5;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info.is-outlined.is-loading::after{border-color:transparent transparent #94e2d5 #94e2d5 !important}html.theme--catppuccin-mocha .button.is-info.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-info.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-info.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-info.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-info.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-info.is-outlined{background-color:transparent;border-color:#94e2d5;box-shadow:none;color:#94e2d5}html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined:hover,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined:focus,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#94e2d5}html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #94e2d5 #94e2d5 !important}html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-info.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-info.is-light{background-color:#effbf9;color:#207466}html.theme--catppuccin-mocha .button.is-info.is-light:hover,html.theme--catppuccin-mocha .button.is-info.is-light.is-hovered{background-color:#e5f8f5;border-color:transparent;color:#207466}html.theme--catppuccin-mocha .button.is-info.is-light:active,html.theme--catppuccin-mocha .button.is-info.is-light.is-active{background-color:#dbf5f1;border-color:transparent;color:#207466}html.theme--catppuccin-mocha .button.is-success{background-color:#a6e3a1;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success:hover,html.theme--catppuccin-mocha .button.is-success.is-hovered{background-color:#9de097;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success:focus,html.theme--catppuccin-mocha .button.is-success.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success:focus:not(:active),html.theme--catppuccin-mocha .button.is-success.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(166,227,161,0.25)}html.theme--catppuccin-mocha .button.is-success:active,html.theme--catppuccin-mocha .button.is-success.is-active{background-color:#93dd8d;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-success{background-color:#a6e3a1;border-color:#a6e3a1;box-shadow:none}html.theme--catppuccin-mocha .button.is-success.is-inverted{background-color:rgba(0,0,0,0.7);color:#a6e3a1}html.theme--catppuccin-mocha .button.is-success.is-inverted:hover,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-success.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#a6e3a1}html.theme--catppuccin-mocha .button.is-success.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-success.is-outlined{background-color:transparent;border-color:#a6e3a1;color:#a6e3a1}html.theme--catppuccin-mocha .button.is-success.is-outlined:hover,html.theme--catppuccin-mocha .button.is-success.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-success.is-outlined:focus,html.theme--catppuccin-mocha .button.is-success.is-outlined.is-focused{background-color:#a6e3a1;border-color:#a6e3a1;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success.is-outlined.is-loading::after{border-color:transparent transparent #a6e3a1 #a6e3a1 !important}html.theme--catppuccin-mocha .button.is-success.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-success.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-success.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-success.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-success.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-success.is-outlined{background-color:transparent;border-color:#a6e3a1;box-shadow:none;color:#a6e3a1}html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined:hover,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined:focus,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#a6e3a1}html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #a6e3a1 #a6e3a1 !important}html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-success.is-light{background-color:#f0faef;color:#287222}html.theme--catppuccin-mocha .button.is-success.is-light:hover,html.theme--catppuccin-mocha .button.is-success.is-light.is-hovered{background-color:#e7f7e5;border-color:transparent;color:#287222}html.theme--catppuccin-mocha .button.is-success.is-light:active,html.theme--catppuccin-mocha .button.is-success.is-light.is-active{background-color:#def4dc;border-color:transparent;color:#287222}html.theme--catppuccin-mocha .button.is-warning{background-color:#f9e2af;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning:hover,html.theme--catppuccin-mocha .button.is-warning.is-hovered{background-color:#f8dea3;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning:focus,html.theme--catppuccin-mocha .button.is-warning.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning:focus:not(:active),html.theme--catppuccin-mocha .button.is-warning.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(249,226,175,0.25)}html.theme--catppuccin-mocha .button.is-warning:active,html.theme--catppuccin-mocha .button.is-warning.is-active{background-color:#f7d997;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-warning{background-color:#f9e2af;border-color:#f9e2af;box-shadow:none}html.theme--catppuccin-mocha .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);color:#f9e2af}html.theme--catppuccin-mocha .button.is-warning.is-inverted:hover,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-warning.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#f9e2af}html.theme--catppuccin-mocha .button.is-warning.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-warning.is-outlined{background-color:transparent;border-color:#f9e2af;color:#f9e2af}html.theme--catppuccin-mocha .button.is-warning.is-outlined:hover,html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-warning.is-outlined:focus,html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-focused{background-color:#f9e2af;border-color:#f9e2af;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-loading::after{border-color:transparent transparent #f9e2af #f9e2af !important}html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-warning.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--catppuccin-mocha .button.is-warning.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-warning.is-outlined{background-color:transparent;border-color:#f9e2af;box-shadow:none;color:#f9e2af}html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined:hover,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined:focus,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#f9e2af}html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #f9e2af #f9e2af !important}html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--catppuccin-mocha .button.is-warning.is-light{background-color:#fef8ec;color:#8a620a}html.theme--catppuccin-mocha .button.is-warning.is-light:hover,html.theme--catppuccin-mocha .button.is-warning.is-light.is-hovered{background-color:#fdf4e0;border-color:transparent;color:#8a620a}html.theme--catppuccin-mocha .button.is-warning.is-light:active,html.theme--catppuccin-mocha .button.is-warning.is-light.is-active{background-color:#fcf0d4;border-color:transparent;color:#8a620a}html.theme--catppuccin-mocha .button.is-danger{background-color:#f38ba8;border-color:transparent;color:#fff}html.theme--catppuccin-mocha .button.is-danger:hover,html.theme--catppuccin-mocha .button.is-danger.is-hovered{background-color:#f27f9f;border-color:transparent;color:#fff}html.theme--catppuccin-mocha .button.is-danger:focus,html.theme--catppuccin-mocha .button.is-danger.is-focused{border-color:transparent;color:#fff}html.theme--catppuccin-mocha .button.is-danger:focus:not(:active),html.theme--catppuccin-mocha .button.is-danger.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(243,139,168,0.25)}html.theme--catppuccin-mocha .button.is-danger:active,html.theme--catppuccin-mocha .button.is-danger.is-active{background-color:#f17497;border-color:transparent;color:#fff}html.theme--catppuccin-mocha .button.is-danger[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-danger{background-color:#f38ba8;border-color:#f38ba8;box-shadow:none}html.theme--catppuccin-mocha .button.is-danger.is-inverted{background-color:#fff;color:#f38ba8}html.theme--catppuccin-mocha .button.is-danger.is-inverted:hover,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--catppuccin-mocha .button.is-danger.is-inverted[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#f38ba8}html.theme--catppuccin-mocha .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-mocha .button.is-danger.is-outlined{background-color:transparent;border-color:#f38ba8;color:#f38ba8}html.theme--catppuccin-mocha .button.is-danger.is-outlined:hover,html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-danger.is-outlined:focus,html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-focused{background-color:#f38ba8;border-color:#f38ba8;color:#fff}html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-loading::after{border-color:transparent transparent #f38ba8 #f38ba8 !important}html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-danger.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--catppuccin-mocha .button.is-danger.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-danger.is-outlined{background-color:transparent;border-color:#f38ba8;box-shadow:none;color:#f38ba8}html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined:hover,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-hovered,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined:focus,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-focused{background-color:#fff;color:#f38ba8}html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-loading:hover::after,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-loading:focus::after,html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #f38ba8 #f38ba8 !important}html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--catppuccin-mocha .button.is-danger.is-light{background-color:#fdedf1;color:#991036}html.theme--catppuccin-mocha .button.is-danger.is-light:hover,html.theme--catppuccin-mocha .button.is-danger.is-light.is-hovered{background-color:#fce1e8;border-color:transparent;color:#991036}html.theme--catppuccin-mocha .button.is-danger.is-light:active,html.theme--catppuccin-mocha .button.is-danger.is-light.is-active{background-color:#fbd5e0;border-color:transparent;color:#991036}html.theme--catppuccin-mocha .button.is-small,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.button{font-size:.75rem}html.theme--catppuccin-mocha .button.is-small:not(.is-rounded),html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.button:not(.is-rounded){border-radius:3px}html.theme--catppuccin-mocha .button.is-normal{font-size:1rem}html.theme--catppuccin-mocha .button.is-medium{font-size:1.25rem}html.theme--catppuccin-mocha .button.is-large{font-size:1.5rem}html.theme--catppuccin-mocha .button[disabled],fieldset[disabled] html.theme--catppuccin-mocha .button{background-color:#6c7086;border-color:#585b70;box-shadow:none;opacity:.5}html.theme--catppuccin-mocha .button.is-fullwidth{display:flex;width:100%}html.theme--catppuccin-mocha .button.is-loading{color:transparent !important;pointer-events:none}html.theme--catppuccin-mocha .button.is-loading::after{position:absolute;left:calc(50% - (1em * 0.5));top:calc(50% - (1em * 0.5));position:absolute !important}html.theme--catppuccin-mocha .button.is-static{background-color:#181825;border-color:#585b70;color:#7f849c;box-shadow:none;pointer-events:none}html.theme--catppuccin-mocha .button.is-rounded,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.button{border-radius:9999px;padding-left:calc(1em + 0.25em);padding-right:calc(1em + 0.25em)}html.theme--catppuccin-mocha .buttons{align-items:center;display:flex;flex-wrap:wrap;justify-content:flex-start}html.theme--catppuccin-mocha .buttons .button{margin-bottom:0.5rem}html.theme--catppuccin-mocha .buttons .button:not(:last-child):not(.is-fullwidth){margin-right:.5rem}html.theme--catppuccin-mocha .buttons:last-child{margin-bottom:-0.5rem}html.theme--catppuccin-mocha .buttons:not(:last-child){margin-bottom:1rem}html.theme--catppuccin-mocha .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large){font-size:.75rem}html.theme--catppuccin-mocha .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large):not(.is-rounded){border-radius:3px}html.theme--catppuccin-mocha .buttons.are-medium .button:not(.is-small):not(.is-normal):not(.is-large){font-size:1.25rem}html.theme--catppuccin-mocha .buttons.are-large .button:not(.is-small):not(.is-normal):not(.is-medium){font-size:1.5rem}html.theme--catppuccin-mocha .buttons.has-addons .button:not(:first-child){border-bottom-left-radius:0;border-top-left-radius:0}html.theme--catppuccin-mocha .buttons.has-addons .button:not(:last-child){border-bottom-right-radius:0;border-top-right-radius:0;margin-right:-1px}html.theme--catppuccin-mocha .buttons.has-addons .button:last-child{margin-right:0}html.theme--catppuccin-mocha .buttons.has-addons .button:hover,html.theme--catppuccin-mocha .buttons.has-addons .button.is-hovered{z-index:2}html.theme--catppuccin-mocha .buttons.has-addons .button:focus,html.theme--catppuccin-mocha .buttons.has-addons .button.is-focused,html.theme--catppuccin-mocha .buttons.has-addons .button:active,html.theme--catppuccin-mocha .buttons.has-addons .button.is-active,html.theme--catppuccin-mocha .buttons.has-addons .button.is-selected{z-index:3}html.theme--catppuccin-mocha .buttons.has-addons .button:focus:hover,html.theme--catppuccin-mocha .buttons.has-addons .button.is-focused:hover,html.theme--catppuccin-mocha .buttons.has-addons .button:active:hover,html.theme--catppuccin-mocha .buttons.has-addons .button.is-active:hover,html.theme--catppuccin-mocha .buttons.has-addons .button.is-selected:hover{z-index:4}html.theme--catppuccin-mocha .buttons.has-addons .button.is-expanded{flex-grow:1;flex-shrink:1}html.theme--catppuccin-mocha .buttons.is-centered{justify-content:center}html.theme--catppuccin-mocha .buttons.is-centered:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--catppuccin-mocha .buttons.is-right{justify-content:flex-end}html.theme--catppuccin-mocha .buttons.is-right:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}@media screen and (max-width: 768px){html.theme--catppuccin-mocha .button.is-responsive.is-small,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.5625rem}html.theme--catppuccin-mocha .button.is-responsive,html.theme--catppuccin-mocha .button.is-responsive.is-normal{font-size:.65625rem}html.theme--catppuccin-mocha .button.is-responsive.is-medium{font-size:.75rem}html.theme--catppuccin-mocha .button.is-responsive.is-large{font-size:1rem}}@media screen and (min-width: 769px) and (max-width: 1055px){html.theme--catppuccin-mocha .button.is-responsive.is-small,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.65625rem}html.theme--catppuccin-mocha .button.is-responsive,html.theme--catppuccin-mocha .button.is-responsive.is-normal{font-size:.75rem}html.theme--catppuccin-mocha .button.is-responsive.is-medium{font-size:1rem}html.theme--catppuccin-mocha .button.is-responsive.is-large{font-size:1.25rem}}html.theme--catppuccin-mocha .container{flex-grow:1;margin:0 auto;position:relative;width:auto}html.theme--catppuccin-mocha .container.is-fluid{max-width:none !important;padding-left:32px;padding-right:32px;width:100%}@media screen and (min-width: 1056px){html.theme--catppuccin-mocha .container{max-width:992px}}@media screen and (max-width: 1215px){html.theme--catppuccin-mocha .container.is-widescreen:not(.is-max-desktop){max-width:1152px}}@media screen and (max-width: 1407px){html.theme--catppuccin-mocha .container.is-fullhd:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}@media screen and (min-width: 1216px){html.theme--catppuccin-mocha .container:not(.is-max-desktop){max-width:1152px}}@media screen and (min-width: 1408px){html.theme--catppuccin-mocha .container:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}html.theme--catppuccin-mocha .content li+li{margin-top:0.25em}html.theme--catppuccin-mocha .content p:not(:last-child),html.theme--catppuccin-mocha .content dl:not(:last-child),html.theme--catppuccin-mocha .content ol:not(:last-child),html.theme--catppuccin-mocha .content ul:not(:last-child),html.theme--catppuccin-mocha .content blockquote:not(:last-child),html.theme--catppuccin-mocha .content pre:not(:last-child),html.theme--catppuccin-mocha .content table:not(:last-child){margin-bottom:1em}html.theme--catppuccin-mocha .content h1,html.theme--catppuccin-mocha .content h2,html.theme--catppuccin-mocha .content h3,html.theme--catppuccin-mocha .content h4,html.theme--catppuccin-mocha .content h5,html.theme--catppuccin-mocha .content h6{color:#cdd6f4;font-weight:600;line-height:1.125}html.theme--catppuccin-mocha .content h1{font-size:2em;margin-bottom:0.5em}html.theme--catppuccin-mocha .content h1:not(:first-child){margin-top:1em}html.theme--catppuccin-mocha .content h2{font-size:1.75em;margin-bottom:0.5714em}html.theme--catppuccin-mocha .content h2:not(:first-child){margin-top:1.1428em}html.theme--catppuccin-mocha .content h3{font-size:1.5em;margin-bottom:0.6666em}html.theme--catppuccin-mocha .content h3:not(:first-child){margin-top:1.3333em}html.theme--catppuccin-mocha .content h4{font-size:1.25em;margin-bottom:0.8em}html.theme--catppuccin-mocha .content h5{font-size:1.125em;margin-bottom:0.8888em}html.theme--catppuccin-mocha .content h6{font-size:1em;margin-bottom:1em}html.theme--catppuccin-mocha .content blockquote{background-color:#181825;border-left:5px solid #585b70;padding:1.25em 1.5em}html.theme--catppuccin-mocha .content ol{list-style-position:outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-mocha .content ol:not([type]){list-style-type:decimal}html.theme--catppuccin-mocha .content ol.is-lower-alpha:not([type]){list-style-type:lower-alpha}html.theme--catppuccin-mocha .content ol.is-lower-roman:not([type]){list-style-type:lower-roman}html.theme--catppuccin-mocha .content ol.is-upper-alpha:not([type]){list-style-type:upper-alpha}html.theme--catppuccin-mocha .content ol.is-upper-roman:not([type]){list-style-type:upper-roman}html.theme--catppuccin-mocha .content ul{list-style:disc outside;margin-left:2em;margin-top:1em}html.theme--catppuccin-mocha .content ul ul{list-style-type:circle;margin-top:0.5em}html.theme--catppuccin-mocha .content ul ul ul{list-style-type:square}html.theme--catppuccin-mocha .content dd{margin-left:2em}html.theme--catppuccin-mocha .content figure{margin-left:2em;margin-right:2em;text-align:center}html.theme--catppuccin-mocha .content figure:not(:first-child){margin-top:2em}html.theme--catppuccin-mocha .content figure:not(:last-child){margin-bottom:2em}html.theme--catppuccin-mocha .content figure img{display:inline-block}html.theme--catppuccin-mocha .content figure figcaption{font-style:italic}html.theme--catppuccin-mocha .content pre{-webkit-overflow-scrolling:touch;overflow-x:auto;padding:0;white-space:pre;word-wrap:normal}html.theme--catppuccin-mocha .content sup,html.theme--catppuccin-mocha .content sub{font-size:75%}html.theme--catppuccin-mocha .content table{width:100%}html.theme--catppuccin-mocha .content table td,html.theme--catppuccin-mocha .content table th{border:1px solid #585b70;border-width:0 0 1px;padding:0.5em 0.75em;vertical-align:top}html.theme--catppuccin-mocha .content table th{color:#b8c5ef}html.theme--catppuccin-mocha .content table th:not([align]){text-align:inherit}html.theme--catppuccin-mocha .content table thead td,html.theme--catppuccin-mocha .content table thead th{border-width:0 0 2px;color:#b8c5ef}html.theme--catppuccin-mocha .content table tfoot td,html.theme--catppuccin-mocha .content table tfoot th{border-width:2px 0 0;color:#b8c5ef}html.theme--catppuccin-mocha .content table tbody tr:last-child td,html.theme--catppuccin-mocha .content table tbody tr:last-child th{border-bottom-width:0}html.theme--catppuccin-mocha .content .tabs li+li{margin-top:0}html.theme--catppuccin-mocha .content.is-small,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.content{font-size:.75rem}html.theme--catppuccin-mocha .content.is-normal{font-size:1rem}html.theme--catppuccin-mocha .content.is-medium{font-size:1.25rem}html.theme--catppuccin-mocha .content.is-large{font-size:1.5rem}html.theme--catppuccin-mocha .icon{align-items:center;display:inline-flex;justify-content:center;height:1.5rem;width:1.5rem}html.theme--catppuccin-mocha .icon.is-small,html.theme--catppuccin-mocha #documenter .docs-sidebar form.docs-search>input.icon{height:1rem;width:1rem}html.theme--catppuccin-mocha .icon.is-medium{height:2rem;width:2rem}html.theme--catppuccin-mocha .icon.is-large{height:3rem;width:3rem}html.theme--catppuccin-mocha .icon-text{align-items:flex-start;color:inherit;display:inline-flex;flex-wrap:wrap;line-height:1.5rem;vertical-align:top}html.theme--catppuccin-mocha .icon-text .icon{flex-grow:0;flex-shrink:0}html.theme--catppuccin-mocha .icon-text .icon:not(:last-child){margin-right:.25em}html.theme--catppuccin-mocha .icon-text .icon:not(:first-child){margin-left:.25em}html.theme--catppuccin-mocha div.icon-text{display:flex}html.theme--catppuccin-mocha .image,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img{display:block;position:relative}html.theme--catppuccin-mocha .image img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img img{display:block;height:auto;width:100%}html.theme--catppuccin-mocha .image img.is-rounded,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img img.is-rounded{border-radius:9999px}html.theme--catppuccin-mocha .image.is-fullwidth,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-fullwidth{width:100%}html.theme--catppuccin-mocha .image.is-square img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-square img,html.theme--catppuccin-mocha .image.is-square .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-square .has-ratio,html.theme--catppuccin-mocha .image.is-1by1 img,html.theme--catppuccin-mocha #documenter .docs-sidebar 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.has-ratio,html.theme--catppuccin-mocha .image.is-5by3 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-5by3 img,html.theme--catppuccin-mocha .image.is-5by3 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-5by3 .has-ratio,html.theme--catppuccin-mocha .image.is-16by9 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-16by9 img,html.theme--catppuccin-mocha .image.is-16by9 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-16by9 .has-ratio,html.theme--catppuccin-mocha .image.is-2by1 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-2by1 img,html.theme--catppuccin-mocha .image.is-2by1 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-2by1 .has-ratio,html.theme--catppuccin-mocha .image.is-3by1 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by1 img,html.theme--catppuccin-mocha 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img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by5 img,html.theme--catppuccin-mocha .image.is-3by5 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by5 .has-ratio,html.theme--catppuccin-mocha .image.is-9by16 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-9by16 img,html.theme--catppuccin-mocha .image.is-9by16 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-9by16 .has-ratio,html.theme--catppuccin-mocha .image.is-1by2 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-1by2 img,html.theme--catppuccin-mocha .image.is-1by2 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-1by2 .has-ratio,html.theme--catppuccin-mocha .image.is-1by3 img,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-1by3 img,html.theme--catppuccin-mocha .image.is-1by3 .has-ratio,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-1by3 .has-ratio{height:100%;width:100%}html.theme--catppuccin-mocha .image.is-square,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-square,html.theme--catppuccin-mocha .image.is-1by1,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-1by1{padding-top:100%}html.theme--catppuccin-mocha .image.is-5by4,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-5by4{padding-top:80%}html.theme--catppuccin-mocha .image.is-4by3,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-4by3{padding-top:75%}html.theme--catppuccin-mocha .image.is-3by2,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by2{padding-top:66.6666%}html.theme--catppuccin-mocha .image.is-5by3,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-5by3{padding-top:60%}html.theme--catppuccin-mocha .image.is-16by9,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-16by9{padding-top:56.25%}html.theme--catppuccin-mocha .image.is-2by1,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-2by1{padding-top:50%}html.theme--catppuccin-mocha .image.is-3by1,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by1{padding-top:33.3333%}html.theme--catppuccin-mocha .image.is-4by5,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-4by5{padding-top:125%}html.theme--catppuccin-mocha .image.is-3by4,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by4{padding-top:133.3333%}html.theme--catppuccin-mocha .image.is-2by3,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-2by3{padding-top:150%}html.theme--catppuccin-mocha .image.is-3by5,html.theme--catppuccin-mocha #documenter .docs-sidebar .docs-logo>img.is-3by5{padding-top:166.6666%}html.theme--catppuccin-mocha .image.is-9by16,html.theme--catppuccin-mocha #documenter 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.button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-focused{background-color:#fff;color:#0a0a0a}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-light{background-color:#ecf0f1;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light:hover,html.theme--documenter-dark .button.is-light.is-hovered{background-color:#e5eaec;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light:focus,html.theme--documenter-dark .button.is-light.is-focused{border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light:focus:not(:active),html.theme--documenter-dark .button.is-light.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(236,240,241,0.25)}html.theme--documenter-dark .button.is-light:active,html.theme--documenter-dark .button.is-light.is-active{background-color:#dde4e6;border-color:transparent;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light{background-color:#ecf0f1;border-color:#ecf0f1;box-shadow:none}html.theme--documenter-dark .button.is-light.is-inverted{background-color:rgba(0,0,0,0.7);color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted:hover,html.theme--documenter-dark .button.is-light.is-inverted.is-hovered{background-color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-inverted{background-color:rgba(0,0,0,0.7);border-color:transparent;box-shadow:none;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-loading::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--documenter-dark .button.is-light.is-outlined{background-color:transparent;border-color:#ecf0f1;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-outlined:hover,html.theme--documenter-dark .button.is-light.is-outlined.is-hovered,html.theme--documenter-dark .button.is-light.is-outlined:focus,html.theme--documenter-dark .button.is-light.is-outlined.is-focused{background-color:#ecf0f1;border-color:#ecf0f1;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light.is-outlined.is-loading::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-light.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading.is-focused::after{border-color:transparent transparent rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--documenter-dark .button.is-light.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-outlined{background-color:transparent;border-color:#ecf0f1;box-shadow:none;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-dark,html.theme--documenter-dark .content kbd.button{background-color:#282f2f;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-dark:hover,html.theme--documenter-dark .content kbd.button:hover,html.theme--documenter-dark .button.is-dark.is-hovered,html.theme--documenter-dark .content kbd.button.is-hovered{background-color:#232829;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-dark:focus,html.theme--documenter-dark .content kbd.button:focus,html.theme--documenter-dark .button.is-dark.is-focused,html.theme--documenter-dark .content kbd.button.is-focused{border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-dark:focus:not(:active),html.theme--documenter-dark .content kbd.button:focus:not(:active),html.theme--documenter-dark .button.is-dark.is-focused:not(:active),html.theme--documenter-dark .content kbd.button.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(40,47,47,0.25)}html.theme--documenter-dark .button.is-dark:active,html.theme--documenter-dark .content kbd.button:active,html.theme--documenter-dark .button.is-dark.is-active,html.theme--documenter-dark .content kbd.button.is-active{background-color:#1d2122;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-dark[disabled],html.theme--documenter-dark .content kbd.button[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark,fieldset[disabled] html.theme--documenter-dark .content kbd.button{background-color:#282f2f;border-color:#282f2f;box-shadow:none}html.theme--documenter-dark .button.is-dark.is-inverted,html.theme--documenter-dark .content kbd.button.is-inverted{background-color:#fff;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted:hover,html.theme--documenter-dark .content kbd.button.is-inverted:hover,html.theme--documenter-dark .button.is-dark.is-inverted.is-hovered,html.theme--documenter-dark .content kbd.button.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--documenter-dark .button.is-dark.is-inverted[disabled],html.theme--documenter-dark .content kbd.button.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-inverted,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-loading::after,html.theme--documenter-dark .content kbd.button.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-dark.is-outlined,html.theme--documenter-dark .content kbd.button.is-outlined{background-color:transparent;border-color:#282f2f;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-outlined:hover,html.theme--documenter-dark .content kbd.button.is-outlined:hover,html.theme--documenter-dark .button.is-dark.is-outlined.is-hovered,html.theme--documenter-dark .content kbd.button.is-outlined.is-hovered,html.theme--documenter-dark .button.is-dark.is-outlined:focus,html.theme--documenter-dark .content kbd.button.is-outlined:focus,html.theme--documenter-dark .button.is-dark.is-outlined.is-focused,html.theme--documenter-dark .content kbd.button.is-outlined.is-focused{background-color:#282f2f;border-color:#282f2f;color:#fff}html.theme--documenter-dark .button.is-dark.is-outlined.is-loading::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-dark.is-outlined.is-loading:hover::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading:focus::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading.is-focused::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-dark.is-outlined[disabled],html.theme--documenter-dark .content kbd.button.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-outlined,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-outlined{background-color:transparent;border-color:#282f2f;box-shadow:none;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined:hover,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined:focus,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-focused,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-focused{background-color:#fff;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading.is-focused::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined[disabled],html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-primary,html.theme--documenter-dark .docstring>section>a.button.docs-sourcelink{background-color:#375a7f;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-primary:hover,html.theme--documenter-dark .docstring>section>a.button.docs-sourcelink:hover,html.theme--documenter-dark .button.is-primary.is-hovered,html.theme--documenter-dark .docstring>section>a.button.is-hovered.docs-sourcelink{background-color:#335476;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-primary:focus,html.theme--documenter-dark 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.docstring>section>a.button.is-outlined.is-hovered.docs-sourcelink,html.theme--documenter-dark .button.is-primary.is-outlined:focus,html.theme--documenter-dark .docstring>section>a.button.is-outlined.docs-sourcelink:focus,html.theme--documenter-dark .button.is-primary.is-outlined.is-focused,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-focused.docs-sourcelink{background-color:#375a7f;border-color:#375a7f;color:#fff}html.theme--documenter-dark .button.is-primary.is-outlined.is-loading::after,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-loading.docs-sourcelink::after{border-color:transparent transparent #375a7f #375a7f !important}html.theme--documenter-dark .button.is-primary.is-outlined.is-loading:hover::after,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-loading.docs-sourcelink:hover::after,html.theme--documenter-dark .button.is-primary.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-loading.is-hovered.docs-sourcelink::after,html.theme--documenter-dark .button.is-primary.is-outlined.is-loading:focus::after,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-loading.docs-sourcelink:focus::after,html.theme--documenter-dark .button.is-primary.is-outlined.is-loading.is-focused::after,html.theme--documenter-dark .docstring>section>a.button.is-outlined.is-loading.is-focused.docs-sourcelink::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-primary.is-outlined[disabled],html.theme--documenter-dark .docstring>section>a.button.is-outlined.docs-sourcelink[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-primary.is-outlined,fieldset[disabled] html.theme--documenter-dark .docstring>section>a.button.is-outlined.docs-sourcelink{background-color:transparent;border-color:#375a7f;box-shadow:none;color:#375a7f}html.theme--documenter-dark 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.button.is-link.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-link.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-link.is-outlined{background-color:transparent;border-color:#1abc9c;box-shadow:none;color:#1abc9c}html.theme--documenter-dark .button.is-link.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-link.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-focused{background-color:#fff;color:#1abc9c}html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-link.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #1abc9c #1abc9c !important}html.theme--documenter-dark .button.is-link.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-link.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-link.is-light{background-color:#edfdf9;color:#15987e}html.theme--documenter-dark .button.is-link.is-light:hover,html.theme--documenter-dark .button.is-link.is-light.is-hovered{background-color:#e2fbf6;border-color:transparent;color:#15987e}html.theme--documenter-dark .button.is-link.is-light:active,html.theme--documenter-dark 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.button.is-info.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-focused{background-color:#fff;color:#3c5dcd}html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-info.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #3c5dcd #3c5dcd !important}html.theme--documenter-dark .button.is-info.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark 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.button.is-success.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#259a12}html.theme--documenter-dark .button.is-success.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-success.is-outlined{background-color:transparent;border-color:#259a12;color:#259a12}html.theme--documenter-dark .button.is-success.is-outlined:hover,html.theme--documenter-dark .button.is-success.is-outlined.is-hovered,html.theme--documenter-dark .button.is-success.is-outlined:focus,html.theme--documenter-dark .button.is-success.is-outlined.is-focused{background-color:#259a12;border-color:#259a12;color:#fff}html.theme--documenter-dark .button.is-success.is-outlined.is-loading::after{border-color:transparent transparent #259a12 #259a12 !important}html.theme--documenter-dark .button.is-success.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-success.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-success.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-success.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-success.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-success.is-outlined{background-color:transparent;border-color:#259a12;box-shadow:none;color:#259a12}html.theme--documenter-dark .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-success.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-focused{background-color:#fff;color:#259a12}html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-success.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #259a12 #259a12 !important}html.theme--documenter-dark .button.is-success.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-success.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-success.is-light{background-color:#effded;color:#2ec016}html.theme--documenter-dark .button.is-success.is-light:hover,html.theme--documenter-dark 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rgba(0,0,0,0.7) rgba(0,0,0,0.7) !important}html.theme--documenter-dark .button.is-warning.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-warning.is-outlined{background-color:transparent;border-color:#f4c72f;box-shadow:none;color:#f4c72f}html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-focused{background-color:rgba(0,0,0,0.7);color:#f4c72f}html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #f4c72f #f4c72f !important}html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-warning.is-inverted.is-outlined{background-color:transparent;border-color:rgba(0,0,0,0.7);box-shadow:none;color:rgba(0,0,0,0.7)}html.theme--documenter-dark .button.is-warning.is-light{background-color:#fefaec;color:#8c6e07}html.theme--documenter-dark .button.is-warning.is-light:hover,html.theme--documenter-dark .button.is-warning.is-light.is-hovered{background-color:#fdf7e0;border-color:transparent;color:#8c6e07}html.theme--documenter-dark .button.is-warning.is-light:active,html.theme--documenter-dark .button.is-warning.is-light.is-active{background-color:#fdf3d3;border-color:transparent;color:#8c6e07}html.theme--documenter-dark .button.is-danger{background-color:#cb3c33;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-danger:hover,html.theme--documenter-dark .button.is-danger.is-hovered{background-color:#c13930;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-danger:focus,html.theme--documenter-dark .button.is-danger.is-focused{border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-danger:focus:not(:active),html.theme--documenter-dark .button.is-danger.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(203,60,51,0.25)}html.theme--documenter-dark .button.is-danger:active,html.theme--documenter-dark .button.is-danger.is-active{background-color:#b7362e;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-danger[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-danger{background-color:#cb3c33;border-color:#cb3c33;box-shadow:none}html.theme--documenter-dark .button.is-danger.is-inverted{background-color:#fff;color:#cb3c33}html.theme--documenter-dark .button.is-danger.is-inverted:hover,html.theme--documenter-dark .button.is-danger.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--documenter-dark .button.is-danger.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#cb3c33}html.theme--documenter-dark .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-danger.is-outlined{background-color:transparent;border-color:#cb3c33;color:#cb3c33}html.theme--documenter-dark .button.is-danger.is-outlined:hover,html.theme--documenter-dark .button.is-danger.is-outlined.is-hovered,html.theme--documenter-dark 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html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-danger.is-light{background-color:#fbefef;color:#c03930}html.theme--documenter-dark .button.is-danger.is-light:hover,html.theme--documenter-dark .button.is-danger.is-light.is-hovered{background-color:#f8e6e5;border-color:transparent;color:#c03930}html.theme--documenter-dark .button.is-danger.is-light:active,html.theme--documenter-dark .button.is-danger.is-light.is-active{background-color:#f6dcda;border-color:transparent;color:#c03930}html.theme--documenter-dark .button.is-small,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.button{font-size:.75rem}html.theme--documenter-dark .button.is-small:not(.is-rounded),html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.button:not(.is-rounded){border-radius:3px}html.theme--documenter-dark .button.is-normal{font-size:1rem}html.theme--documenter-dark .button.is-medium{font-size:1.25rem}html.theme--documenter-dark .button.is-large{font-size:1.5rem}html.theme--documenter-dark .button[disabled],fieldset[disabled] html.theme--documenter-dark .button{background-color:#8c9b9d;border-color:#5e6d6f;box-shadow:none;opacity:.5}html.theme--documenter-dark .button.is-fullwidth{display:flex;width:100%}html.theme--documenter-dark .button.is-loading{color:transparent !important;pointer-events:none}html.theme--documenter-dark .button.is-loading::after{position:absolute;left:calc(50% - (1em * 0.5));top:calc(50% - (1em * 0.5));position:absolute !important}html.theme--documenter-dark .button.is-static{background-color:#282f2f;border-color:#5e6d6f;color:#dbdee0;box-shadow:none;pointer-events:none}html.theme--documenter-dark .button.is-rounded,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.button{border-radius:9999px;padding-left:calc(1em + 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.buttons.has-addons .button:not(:first-child){border-bottom-left-radius:0;border-top-left-radius:0}html.theme--documenter-dark .buttons.has-addons .button:not(:last-child){border-bottom-right-radius:0;border-top-right-radius:0;margin-right:-1px}html.theme--documenter-dark .buttons.has-addons .button:last-child{margin-right:0}html.theme--documenter-dark .buttons.has-addons .button:hover,html.theme--documenter-dark .buttons.has-addons .button.is-hovered{z-index:2}html.theme--documenter-dark .buttons.has-addons .button:focus,html.theme--documenter-dark .buttons.has-addons .button.is-focused,html.theme--documenter-dark .buttons.has-addons .button:active,html.theme--documenter-dark .buttons.has-addons .button.is-active,html.theme--documenter-dark .buttons.has-addons .button.is-selected{z-index:3}html.theme--documenter-dark .buttons.has-addons .button:focus:hover,html.theme--documenter-dark .buttons.has-addons .button.is-focused:hover,html.theme--documenter-dark .buttons.has-addons .button:active:hover,html.theme--documenter-dark .buttons.has-addons .button.is-active:hover,html.theme--documenter-dark .buttons.has-addons .button.is-selected:hover{z-index:4}html.theme--documenter-dark .buttons.has-addons .button.is-expanded{flex-grow:1;flex-shrink:1}html.theme--documenter-dark .buttons.is-centered{justify-content:center}html.theme--documenter-dark .buttons.is-centered:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--documenter-dark .buttons.is-right{justify-content:flex-end}html.theme--documenter-dark .buttons.is-right:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}@media screen and (max-width: 768px){html.theme--documenter-dark .button.is-responsive.is-small,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.5625rem}html.theme--documenter-dark .button.is-responsive,html.theme--documenter-dark .button.is-responsive.is-normal{font-size:.65625rem}html.theme--documenter-dark .button.is-responsive.is-medium{font-size:.75rem}html.theme--documenter-dark .button.is-responsive.is-large{font-size:1rem}}@media screen and (min-width: 769px) and (max-width: 1055px){html.theme--documenter-dark .button.is-responsive.is-small,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.is-responsive{font-size:.65625rem}html.theme--documenter-dark .button.is-responsive,html.theme--documenter-dark .button.is-responsive.is-normal{font-size:.75rem}html.theme--documenter-dark .button.is-responsive.is-medium{font-size:1rem}html.theme--documenter-dark .button.is-responsive.is-large{font-size:1.25rem}}html.theme--documenter-dark .container{flex-grow:1;margin:0 auto;position:relative;width:auto}html.theme--documenter-dark .container.is-fluid{max-width:none !important;padding-left:32px;padding-right:32px;width:100%}@media screen and (min-width: 1056px){html.theme--documenter-dark .container{max-width:992px}}@media screen and (max-width: 1215px){html.theme--documenter-dark .container.is-widescreen:not(.is-max-desktop){max-width:1152px}}@media screen and (max-width: 1407px){html.theme--documenter-dark .container.is-fullhd:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}@media screen and (min-width: 1216px){html.theme--documenter-dark .container:not(.is-max-desktop){max-width:1152px}}@media screen and (min-width: 1408px){html.theme--documenter-dark .container:not(.is-max-desktop):not(.is-max-widescreen){max-width:1344px}}html.theme--documenter-dark .content li+li{margin-top:0.25em}html.theme--documenter-dark .content p:not(:last-child),html.theme--documenter-dark .content dl:not(:last-child),html.theme--documenter-dark .content ol:not(:last-child),html.theme--documenter-dark .content ul:not(:last-child),html.theme--documenter-dark .content blockquote:not(:last-child),html.theme--documenter-dark .content pre:not(:last-child),html.theme--documenter-dark .content table:not(:last-child){margin-bottom:1em}html.theme--documenter-dark .content h1,html.theme--documenter-dark .content h2,html.theme--documenter-dark .content h3,html.theme--documenter-dark .content h4,html.theme--documenter-dark .content h5,html.theme--documenter-dark .content h6{color:#f2f2f2;font-weight:600;line-height:1.125}html.theme--documenter-dark .content h1{font-size:2em;margin-bottom:0.5em}html.theme--documenter-dark .content h1:not(:first-child){margin-top:1em}html.theme--documenter-dark .content h2{font-size:1.75em;margin-bottom:0.5714em}html.theme--documenter-dark .content h2:not(:first-child){margin-top:1.1428em}html.theme--documenter-dark .content h3{font-size:1.5em;margin-bottom:0.6666em}html.theme--documenter-dark .content h3:not(:first-child){margin-top:1.3333em}html.theme--documenter-dark .content h4{font-size:1.25em;margin-bottom:0.8em}html.theme--documenter-dark .content h5{font-size:1.125em;margin-bottom:0.8888em}html.theme--documenter-dark .content h6{font-size:1em;margin-bottom:1em}html.theme--documenter-dark .content blockquote{background-color:#282f2f;border-left:5px solid #5e6d6f;padding:1.25em 1.5em}html.theme--documenter-dark .content ol{list-style-position:outside;margin-left:2em;margin-top:1em}html.theme--documenter-dark .content ol:not([type]){list-style-type:decimal}html.theme--documenter-dark .content ol.is-lower-alpha:not([type]){list-style-type:lower-alpha}html.theme--documenter-dark .content ol.is-lower-roman:not([type]){list-style-type:lower-roman}html.theme--documenter-dark .content ol.is-upper-alpha:not([type]){list-style-type:upper-alpha}html.theme--documenter-dark .content ol.is-upper-roman:not([type]){list-style-type:upper-roman}html.theme--documenter-dark .content ul{list-style:disc outside;margin-left:2em;margin-top:1em}html.theme--documenter-dark .content ul ul{list-style-type:circle;margin-top:0.5em}html.theme--documenter-dark .content ul ul ul{list-style-type:square}html.theme--documenter-dark .content dd{margin-left:2em}html.theme--documenter-dark .content figure{margin-left:2em;margin-right:2em;text-align:center}html.theme--documenter-dark .content figure:not(:first-child){margin-top:2em}html.theme--documenter-dark .content figure:not(:last-child){margin-bottom:2em}html.theme--documenter-dark .content figure img{display:inline-block}html.theme--documenter-dark .content figure figcaption{font-style:italic}html.theme--documenter-dark .content pre{-webkit-overflow-scrolling:touch;overflow-x:auto;padding:0;white-space:pre;word-wrap:normal}html.theme--documenter-dark .content sup,html.theme--documenter-dark .content sub{font-size:75%}html.theme--documenter-dark .content table{width:100%}html.theme--documenter-dark .content table td,html.theme--documenter-dark .content table th{border:1px solid #5e6d6f;border-width:0 0 1px;padding:0.5em 0.75em;vertical-align:top}html.theme--documenter-dark .content table th{color:#f2f2f2}html.theme--documenter-dark .content table th:not([align]){text-align:inherit}html.theme--documenter-dark .content table thead td,html.theme--documenter-dark .content table thead th{border-width:0 0 2px;color:#f2f2f2}html.theme--documenter-dark .content table tfoot td,html.theme--documenter-dark .content table tfoot th{border-width:2px 0 0;color:#f2f2f2}html.theme--documenter-dark .content table tbody tr:last-child td,html.theme--documenter-dark .content table tbody tr:last-child th{border-bottom-width:0}html.theme--documenter-dark .content .tabs li+li{margin-top:0}html.theme--documenter-dark .content.is-small,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.content{font-size:.75rem}html.theme--documenter-dark .content.is-normal{font-size:1rem}html.theme--documenter-dark .content.is-medium{font-size:1.25rem}html.theme--documenter-dark .content.is-large{font-size:1.5rem}html.theme--documenter-dark 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img,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img img{display:block;height:auto;width:100%}html.theme--documenter-dark .image img.is-rounded,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img img.is-rounded{border-radius:9999px}html.theme--documenter-dark .image.is-fullwidth,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-fullwidth{width:100%}html.theme--documenter-dark .image.is-square img,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-square img,html.theme--documenter-dark .image.is-square .has-ratio,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-square .has-ratio,html.theme--documenter-dark .image.is-1by1 img,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-1by1 img,html.theme--documenter-dark .image.is-1by1 .has-ratio,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-1by1 .has-ratio,html.theme--documenter-dark .image.is-5by4 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.docs-logo>img.is-3by1{padding-top:33.3333%}html.theme--documenter-dark .image.is-4by5,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-4by5{padding-top:125%}html.theme--documenter-dark .image.is-3by4,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by4{padding-top:133.3333%}html.theme--documenter-dark .image.is-2by3,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-2by3{padding-top:150%}html.theme--documenter-dark .image.is-3by5,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by5{padding-top:166.6666%}html.theme--documenter-dark .image.is-9by16,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-9by16{padding-top:177.7777%}html.theme--documenter-dark .image.is-1by2,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-1by2{padding-top:200%}html.theme--documenter-dark .image.is-1by3,html.theme--documenter-dark #documenter .docs-sidebar 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.hljs-string{color:#38a}.hljs-emphasis{font-style:italic}.hljs-strong{font-weight:bold}.gap-4{gap:1rem} diff --git a/previews/PR1153/assets/themeswap.js b/previews/PR1153/assets/themeswap.js new file mode 100644 index 0000000000..9f5eebe6aa --- /dev/null +++ b/previews/PR1153/assets/themeswap.js @@ -0,0 +1,84 @@ +// Small function to quickly swap out themes. Gets put into the tag.. +function set_theme_from_local_storage() { + // Initialize the theme to null, which means default + var theme = null; + // If the browser supports the localstorage and is not disabled then try to get the + // documenter theme + if (window.localStorage != null) { + // Get the user-picked theme from localStorage. May be `null`, which means the default + // theme. + theme = window.localStorage.getItem("documenter-theme"); + } + // Check if the users preference is for dark color scheme + var darkPreference = + window.matchMedia("(prefers-color-scheme: dark)").matches === true; + // Initialize a few variables for the loop: + // + // - active: will contain the index of the theme that should be active. Note that there + // is no guarantee that localStorage contains sane values. If `active` stays `null` + // we either could not find the theme or it is the default (primary) theme anyway. + // Either way, we then need to stick to the primary theme. + // + // - disabled: style sheets that should be disabled (i.e. all the theme style sheets + // that are not the currently active theme) + var active = null; + var disabled = []; + var primaryLightTheme = null; + var primaryDarkTheme = null; + for (var i = 0; i < document.styleSheets.length; i++) { + var ss = document.styleSheets[i]; + // The tag of each style sheet is expected to have a data-theme-name attribute + // which must contain the name of the theme. The names in localStorage much match this. + var themename = ss.ownerNode.getAttribute("data-theme-name"); + // attribute not set => non-theme stylesheet => ignore + if (themename === null) continue; + // To distinguish the default (primary) theme, it needs to have the data-theme-primary + // attribute set. + if (ss.ownerNode.getAttribute("data-theme-primary") !== null) { + primaryLightTheme = themename; + } + // Check if the theme is primary dark theme so that we could store its name in darkTheme + if (ss.ownerNode.getAttribute("data-theme-primary-dark") !== null) { + primaryDarkTheme = themename; + } + // If we find a matching theme (and it's not the default), we'll set active to non-null + if (themename === theme) active = i; + // Store the style sheets of inactive themes so that we could disable them + if (themename !== theme) disabled.push(ss); + } + var activeTheme = null; + if (active !== null) { + // If we did find an active theme, we'll (1) add the theme--$(theme) class to + document.getElementsByTagName("html")[0].className = "theme--" + theme; + activeTheme = theme; + } else { + // If we did _not_ find an active theme, then we need to fall back to the primary theme + // which can either be dark or light, depending on the user's OS preference. + var activeTheme = darkPreference ? primaryDarkTheme : primaryLightTheme; + // In case it somehow happens that the relevant primary theme was not found in the + // preceding loop, we abort without doing anything. + if (activeTheme === null) { + console.error("Unable to determine primary theme."); + return; + } + // When switching to the primary light theme, then we must not have a class name + // for the tag. 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The names in localStorage much match this. + var themename = ss.ownerNode.getAttribute("data-theme-name"); + // attribute not set => non-theme stylesheet => ignore + if (themename === null) continue; + // we'll disable all the stylesheets, except for the active one + ss.disabled = !(themename == activeTheme); + } +} +set_theme_from_local_storage(); diff --git a/previews/PR1153/assets/warner.js b/previews/PR1153/assets/warner.js new file mode 100644 index 0000000000..3f6f5d0083 --- /dev/null +++ b/previews/PR1153/assets/warner.js @@ -0,0 +1,52 @@ +function maybeAddWarning() { + // DOCUMENTER_NEWEST is defined in versions.js, DOCUMENTER_CURRENT_VERSION and DOCUMENTER_STABLE + // in siteinfo.js. + // If either of these are undefined something went horribly wrong, so we abort. + if ( + window.DOCUMENTER_NEWEST === undefined || + window.DOCUMENTER_CURRENT_VERSION === undefined || + window.DOCUMENTER_STABLE === undefined + ) { + return; + } + + // Current version is not a version number, so we can't tell if it's the newest version. Abort. + if (!/v(\d+\.)*\d+/.test(window.DOCUMENTER_CURRENT_VERSION)) { + return; + } + + // Current version is newest version, so no need to add a warning. + if (window.DOCUMENTER_NEWEST === window.DOCUMENTER_CURRENT_VERSION) { + return; + } + + // Add a noindex meta tag (unless one exists) so that search engines don't index this version of the docs. + if (document.body.querySelector('meta[name="robots"]') === null) { + const meta = document.createElement("meta"); + meta.name = "robots"; + meta.content = "noindex"; + + document.getElementsByTagName("head")[0].appendChild(meta); + } + + const div = document.createElement("div"); + div.classList.add("outdated-warning-overlay"); + const closer = document.createElement("button"); + closer.classList.add("outdated-warning-closer", "delete"); + closer.addEventListener("click", function () { + document.body.removeChild(div); + }); + const href = window.documenterBaseURL + "/../" + window.DOCUMENTER_STABLE; + div.innerHTML = + 'This documentation is not for the latest stable release, but for either the development version or an older release.
Click here to go to the documentation for the latest stable release.'; + div.appendChild(closer); + document.body.appendChild(div); +} + +if (document.readyState === "loading") { + document.addEventListener("DOMContentLoaded", maybeAddWarning); +} else { + maybeAddWarning(); +} diff --git a/previews/PR1153/index.html b/previews/PR1153/index.html new file mode 100644 index 0000000000..6d161a87a0 --- /dev/null +++ b/previews/PR1153/index.html @@ -0,0 +1,6 @@ + +Home · Harmonie wiki
GitHub

Harmonie System Documentation

Welcome to the Harmonie system documentation

Github

Contributing

To update a page:

  • Click the "Edit on Github" button at the top right of the page
  • Edit the markdown file on github.com
  • commit (this creates a new branch in your fork) and start a pull request

When adding new pages also add them to docs/pages.jl so they appear in the navigation bar.

To add a reference:

  • Update docs/references.bib using <Lastname><Year>` as the citation key.
  • Cite paper in markdown using [<Lastname><Year>](@cite)

Instructions how to build the system documentation locally are here.

diff --git a/previews/PR1153/objects.inv b/previews/PR1153/objects.inv new file mode 100644 index 0000000000..54f949aa8f Binary files /dev/null and b/previews/PR1153/objects.inv differ diff --git a/previews/PR1153/references/index.html b/previews/PR1153/references/index.html new file mode 100644 index 0000000000..e43bacf3ac --- /dev/null +++ b/previews/PR1153/references/index.html @@ -0,0 +1,6 @@ + +References · Harmonie wiki
GitHub

References

diff --git a/previews/PR1153/search_index.js b/previews/PR1153/search_index.js new file mode 100644 index 0000000000..2fc1fdb8a6 --- /dev/null +++ b/previews/PR1153/search_index.js @@ -0,0 +1,3 @@ +var documenterSearchIndex = {"docs": +[{"location":"ForecastModel/SingleColumnModel/Forcing/#musc-forcing","page":"Forcing","title":"MUSC Forcing","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"From Eric Bazile: The fields SXXXFORC0001 –> SXXXFORC00NN in the initial file for MUSC are the atmospheric forcing without any rules for variables or advection etc ...","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"XXX = vertical levels\nNN = number of forcing fields","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"So if you put for NN=1 the temperature and QV in 2, and the geostrophic wind ug (3) and Vg (4) and you want to force MUSC for 48h with a nudging for T and Q and a geostrophic wind you should add in the MUSC namelist ","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"NAMCT0\n LSFORC=T\n LSFROCS= FALSE ; default ONLY for surface forcing without SURFEX\n/ \n&NAMGFL\n NGFL_FORC=4 ; number of atmospheric forcing fields\n/\n&NAMLSFORC\n LGEOST_UV_FRC=.TRUE., ; geostrophic wind forcing\n LMUSCLFA=.TRUE.,\n NGEOST_U_DEB=3, ; Ug is in position 3 in GFL_FORC\n NGEOST_U_NUM=1, ; ONLY 1 Ug available \n NGEOST_V_DEB=4, ; Vg is in position 4 in GFL_FORC\n NGEOST_V_NUM=1, ; ONLY one Vg available\n LT_NUDG=.TRUE., : Nudging for T\n LQV_NUDG=.TRUE., ; Nudging for Qv\n RELAX_TAUT=43200. ; Relaxation time for Nudging for T\n RELAX_TAUQ=43200. ; same for Q\n NT_NUDG_NUM=1 ; Number of nudging profile for T \n NT_NUDG_DEB=1 ; Profile 1 used for the nudging of T\n NQV_NUDG_NUM=1 ; Number of nudging profile for Q\n NQV_NUDG_DEB=2 ; Profile 2 used for nudging Qv\n/","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"Here you can run MUSC for 1 day or 100 years with the same nudging profile and geostrophic wind !","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"So it is fully flexible BUT the user should know how the initial profile was created and which fields are in FORC00NN etc ....","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"After you can have several nudging profile (for several time) instead of one profile used for all the simulation. You just need to put the number of profile For ex you have 5 profiles for T for the nudging at 0, 6, 12 18 24. and if you put the T profile 0 in 1, etc ... the modified namelist","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"&NAMGFL\n NGFL_FORC=8 ; number of atmospheric forcing fields\n/\n&NAMLSFORC\n LGEOST_UV_FRC=.TRUE., ; geostrophic wind forcing\n LMUSCLFA=.TRUE.,\n NGEOST_U_DEB=7, ; Ug is in position 3 in GFL_FORC\n NGEOST_U_NUM=1, ; ONLY 1 Ug available \n NGEOST_V_DEB=8, ; Vg is in position 4 in GFL_FORC\n NGEOST_V_NUM=1, ; ONLY one Vg available\n LT_NUDG=.TRUE., : Nudging for T\n LQV_NUDG=.TRUE., ; Nudging for Qv\n RELAX_TAUT=43200. ; Relaxation time for Nudging for T\n RELAX_TAUQ=43200. ; same for Q\n NT_NUDG_NUM=5 ; Number of nudging profile for T \n NT_NUDG_DEB=1 ; Profile 1 used for the nudging of T\n NQV_NUDG_NUM=1 ; Number of nudging profile for Q\n NQV_NUDG_DEB=6 ; Profile 2 used for nudging Qv\n NL_T_NUDG_TIME(1) = 0\n NL_T_NUDG_TIME(2) = 21600\nNL_T_NUDG_TIME(3) = 43200\nNL_T_NUDG_TIME(4) = 64800\nNL_T_NUDG_TIME(5) = 86400\n/","category":"page"},{"location":"ForecastModel/SingleColumnModel/Forcing/","page":"Forcing","title":"Forcing","text":"and now you can not run MUSC more than 1 day ... if the time between the forcing profile is the same you can use *_FREQ instead of TIME ...","category":"page"},{"location":"Overview/Content/#Harmonie-Content","page":"Content","title":"Harmonie Content","text":"","category":"section"},{"location":"Overview/Content/#Overview","page":"Content","title":"Overview","text":"","category":"section"},{"location":"Overview/Content/","page":"Content","title":"Content","text":"Harmonie is HIRLAM's adaptation of the LAM version of the IFS/ARPEGE project. The common code shared with the ALADIN program, Meteo France and ECMWF only contains the source code. Harmonie adds the build environment, scripts, support for a scheduler, and a number of diagnostics tools for file conversion and postprocessing. In summary a git clone of harmonie from github contains the following main directories","category":"page"},{"location":"Overview/Content/","page":"Content","title":"Content","text":"config-sh : Configuration and job submission files for different platforms.\nconst : A selected number of constant files for bias correction, assimilation and different internal schemes. A large number of data for climate generation and the RTTOV software is kept outside of the repository. See [wiki:HarmonieSystemDocumentation#Downloaddata].\necf : Directory for the main configuration file config_exp.h and the containers for the scheduler ECFLOW.\nsuites Scripts and suit definition files for ECFLOW, the scheduler for HARMONIE. \nnam : Namelists for different configurations.\nscr : Scripts to run the different tasks.\nsrc : The IFS/ARPEGE source code.\nutil : A number of utilities and support libraries.","category":"page"},{"location":"Overview/Content/#util","page":"Content","title":"util","text":"","category":"section"},{"location":"Overview/Content/","page":"Content","title":"Content","text":"The util directory contains the following main directories","category":"page"},{"location":"Overview/Content/","page":"Content","title":"Content","text":"auxlibs : Contains gribex, bufr, rgb and some dummy routines\nbinutils : https://www.gnu.org/software/binutils/\nchecknorms : Script for code norm checking\ngl_grib_api : Boundary file generator and file converter\nmakeup : HIRLAM style compilation tool\nmusc : MUSC scripts\nobsmon : Code to produce obsmon sqlite files\noffline : SURFEX offline code\noulan : Converts conventional BUFR data to OBSOUL format read by bator.\nRadarDAbyFA : Field alignment code","category":"page"},{"location":"Observations/Iasi/#IASI-radiances-(pre-)-processing","page":"IASI","title":"IASI radiances (pre-) processing","text":"","category":"section"},{"location":"Observations/Iasi/#Introduction","page":"IASI","title":"Introduction","text":"","category":"section"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Typical IASI radiance data reception consists of a subset of 366 channels out of the full set of 8461. These cover the infrared absorption spectrum from 3.8 to 15.4 micrometers. In the context of NWP, the most useful IASI channels include (i) the temperature-sounding channels in the approximate channel index range 100-450, (ii) the humidity-sounding channels at 2800-3500 and 5000-5500 indices, and (iii) surface-sensing window channels at 500-1000. Most of the NWP impact from IASI is thought to come from group (i) and especially from the upper-tropospheric and lower-stratospheric channels in the range 200-300.","category":"page"},{"location":"Observations/Iasi/#Including-IASI-radiances-in-a-HARMONIE-run","page":"IASI","title":"Including IASI radiances in a HARMONIE run","text":"","category":"section"},{"location":"Observations/Iasi/#scr/include.ass","page":"IASI","title":"scr/include.ass","text":"","category":"section"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"scr/include.ass should be edited to \"switch on\" the use of AMSUA (AMSU-A), AMSUB (AMSU-B/MHS):","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"export IASI_OBS=1 # IASI\nexport ATOVS_SOURCE=mars # local: EUMETCast;\nexport IASI_SOURCE=ears # mars:MARS | else: file in $OBDIR\nexport IASI_RT_COEF=lblrtm # genln2|kcarta|lblrtm\n[[ $IASI_OBS -eq 1 ]] && types_BASE=\"$types_BASE iasi\"","category":"page"},{"location":"Observations/Iasi/#Loading-the-IASI-radiances","page":"IASI","title":"Loading the IASI radiances","text":"","category":"section"},{"location":"Observations/Iasi/#Data-extracted-from-MARS","page":"IASI","title":"Data extracted from MARS","text":"","category":"section"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":" elif [ \"$base\" = iasi ] ; then\n # IASI\n if [ \"$IASI_OBS\" -eq 1 ]; then\n echo \"iasi iasi BUFR iasi \">>batormap\n ln -sf \"${HM_LIB}\"/const/bator_param/param_bator.cfg.iasi param.cfg\n if [ \"$IASI_SOURCE\" = mars ] ; then\n ln -sf \"$WRK\"/splitObs/iasi ./BUFR.iasi\n else\n ln -sf $OBSDIR/iasi$DTG ./BUFR.iasi\n fi\n fi","category":"page"},{"location":"Observations/Iasi/#Locally-received-data","page":"IASI","title":"Locally received data","text":"","category":"section"},{"location":"Observations/Iasi/#Controlling-the-detection-of-cloud","page":"IASI","title":"Controlling the detection of cloud","text":"","category":"section"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"IASI radiances are strongly influenced by cloud. Because of inaccurate forward modelling, large background errors in cloud fields, and non-linear effects, success in the use of IASI requires careful screening and removal of cloud-affected data. In the HARMONIE data assimilation system, the screening for cloud follows the method of McNally and Watts (2003). The power of this method lies in the use of a large number of individual channels such that much of the disturbing instrument noise can be smoothed out and the cloud radiative effect is therefore more easily detected.","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Even if the active use of IASI is limited to relatively small number of channels (such as the 55-channel subset in MetCoOp in early 2021), it is advisable to include more than 100 channels in the cloud detection channel list. Furthermore, it is important that all these channels are subjected to VarBC. To achieve the latter, one needs to make sure that blacklisting for the cloud detection channels uses the fail(EXPERIMENTAL) syntax rather than fail(CONSTANT). The following excerpt from src/blacklists/hirlam_blacklist.b.data_selection_after_20140601 illustrates the concept:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":" if (SENSOR = iasi) then\n\n ! remove channels that are not used in either cloud detection\n ! or minimization\n if PRESS notin (38, 49, 51, 55, 57, 61, 63, 83, 85, 87,\n 104, 109, 111, 116, 122, 128, 135, 141, 146, 148,\n 154, 159, 161, 167, 173, 179, 180, 185, 187, 193,\n 199, 205, 207, 210, 212, 214, 217, 219, 222, 224,\n 226, 230, 232, 236, 239, 242, 243, 246, 249, 252,\n 254, 256, 258, 260, 262, 265, 267, 269, 275, 278,\n 280, 282, 284, 286, 288, 290, 292, 294, 296, 299,\n 306, 308, 310, 312, 314, 316, 318, 320, 323, 325,\n 327, 329, 331, 333, 335, 341, 345, 347, 350, 352,\n 354, 356, 358, 360, 362, 364, 366, 369, 371, 373,\n 375, 377, 379, 381, 383, 386, 389, 398, 401, 404,\n 407, 410, 414, 416, 426, 428, 432, 434, 439, 445,\n 457, 515, 546, 552, 559, 566, 571, 573, 646, 662,\n 668, 756, 867, 921, 1027, 1133, 1191, 1194, 1271, 1805,\n 1884, 1946, 1991, 2094, 2239, 2701, 2819, 2910, 2919, 2991,\n 2993, 3002, 3008, 3014, 3098, 3207, 3228, 3281, 3309, 3322,\n 3438, 3442, 3484, 3491, 3499, 3506, 3575, 3582, 3658, 4032)\n then fail(CONSTANT); endif;\n\n if PRESS notin (38, 51, 63, 85, 104, 109, 167, 173, 180, 185,\n 193, 199, 205, 207, 212, 224, 230, 236, 239, 242,\n 243, 249, 296, 333, 337, 345, 352, 386, 389, 432,\n 2701, 2819, 2910, 2919, 2991, 2993, 3002, 3008, 3014, 3098,\n 3207, 3228, 3281, 3309, 3322, 3438, 3442, 3484, 3491, 3499,\n 3506, 3575, 3582, 3658, 4032)\n then fail(EXPERIMENTAL);\n endif;\n\n endif; ! SENSOR = IASI","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Here we provide two lists of IASI channels. The first list includes all those channels that are either used in the cloud detection, or are intended for active assimilation (or both). The second list is a subset of the first and includes just those intended for active assimilation. Only those channels included in the latter list will have a significant weight during the assimilation process.","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"The control for the cloud detection happens via namelist file at nam/IASI_CLDDET.NL. The format of the namelist file is illustrated below:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"&NAMCLDDET\nN__Band_Size(1)=145\nN__Bands(1:145,1) =\n 38, 49, 51, 55, 57, 61, 63, 83, 85, 87,\n 104, 109, 111, 116, 122, 128, 135, 141, 146, 148,\n 154, 159, 161, 167, 173, 179, 180, 185, 187, 193,\n 199, 205, 207, 210, 212, 214, 217, 219, 222, 224,\n 226, 230, 232, 236, 239, 242, 243, 246, 249, 252,\n 254, 256, 258, 260, 262, 265, 267, 269, 275, 278,\n 280, 282, 284, 286, 288, 290, 292, 294, 296, 299,\n 306, 308, 310, 312, 314, 316, 318, 320, 323, 325,\n 327, 329, 331, 333, 335, 341, 345, 347, 350, 352,\n 354, 356, 358, 360, 362, 364, 366, 369, 371, 373,\n 375, 377, 379, 381, 383, 386, 389, 398, 401, 404,\n 407, 410, 414, 416, 426, 428, 432, 434, 439, 445,\n 457, 515, 546, 552, 559, 566, 571, 573, 646, 662,\n 668, 756, 867, 921, 1027, 1133, 1191, 1194, 1271, 1805,\n1884, 1946, 1991, 2094, 2239\n/","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Here we specify a list of 145 channels to be included in \"band 1\" of the cloud detection, i.e., in the main cloud detection channel band. The setup of the cloud detection involves not just the channel list but several additional tuning parameters that can be modified to make the screening more or less conservative. The default settings are specified in src/arpifs/obs_preproc/cloud_detect_setup.F90. A comprehensive description of the cloud detection scheme, including explanations of the various tuning parameter values, is given at the NWPSAF web site https://nwp-saf.eumetsat.int/site/software/aerosol-and-cloud-detection/documentation/.","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Log file of the Screening task will indicate whether the formatting of the namelist file is appropriate:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":" READING CLOUD DETECTION FILE FOR IASI\n IASI CLOUD DETECTION FILE READ OK","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"In case of an error, the following is printed instead:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":" READING CLOUD DETECTION FILE FOR IASI\n PROBLEM READING IASI CLOUD DETECTION FILE: Using Default Values","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"The third possibility is that the namelist file does not appear in the working directory, in which case the printout statement is this:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":" READING CLOUD DETECTION FILE FOR IASI\n NO IASI CLOUD DETECTION FILE : Using Default Values","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"Please note that the use of the \"Default Values\" is generally not a desired outcome. This is because many of the cloud detection channels in the default list (see src/arpifs/obs_preproc/cloud_detect_setup.F90) are sensitive to higher stratosphere and therefore may be severely affected by the relatively low model top of limited-area HARMONIE systems.","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"References:","category":"page"},{"location":"Observations/Iasi/","page":"IASI","title":"IASI","text":"McNally, AP, and PD Watts, 2003: A cloud detection algorithm for high-spectral-resolution infrared sounders. Quarterly Journal of the Royal Meteorological Society, 129, 3411-3423, doi:10.1256/qj.02.208.","category":"page"},{"location":"Verification/Verification/#Monitor","page":"Verification","title":"Monitor","text":"","category":"section"},{"location":"Verification/Verification/","page":"Verification","title":"Verification","text":"monitor documentation","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#configure-your-experiment","page":"Experiment","title":"Experiment configuration","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Introduction","page":"Experiment","title":"Introduction","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"There are several levels on configuration available in HARMONIE. The highest level of configuration is done in ecf/config_exp.h. It includes the environment variables, which are used to control the experimentation. In the following we describe the meaning of the different variables and are described in the order they appear in ecf/config_exp.h.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Host specific paths and environment variables for your system are defined in Env_system. ","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Build-options","page":"Experiment","title":"Build options","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Build and bin paths ****\n# Definitions about Build, should fit with hm_rev\nBUILD=${BUILD-yes} # Turn on or off the compilation and binary build (yes|no)\nBUILD_WITH=${BUILD_WITH-makeup} # Which build system to use (makeup|cmake)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"BUILD is a switch for compiling HARMONIE code (yes|no) and BUILD_WITH controls which build system to use when compiling HARMONIE-AROME.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"BINDIR=${BINDIR-$HM_DATA/bin} # Binary directory","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"BINDIR is the location of where your HARMONIE binaries will be installed. You can use this to point to binaries outside of your experiment. A few other options for non default configurations exists as well:","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"COMPILE_ENKF=${COMPILE_ENKF-\"no\"} # Compile LETKF code (yes|no)\nCOMPILE_DABYFA=${COMPILE_DABYFA-\"no\"} # Compile FA/VC code (yes|no)\nSURFEX_OFFLINE_BINARIES=\"no\" # Switch to compile and use offline SURFEX binaries","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#General-settings","page":"Experiment","title":"General settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Misc, defined first because it's used later ****\n\nCNMEXP=HARM # Four character experiment identifier\nWRK=$HM_DATA/$CYCLEDIR # Work directory","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"CNMEXP: experiment identifier used by MASTERODB\nWRK is the work directory. The suggested path on ECMWF.atos is $SCRATCH/hm_home/${EXP}/$CYCLEDIR","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Archive-settings-(ECMWF)","page":"Experiment","title":"Archive settings (ECMWF)","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Since $SCRATCH is cleaned regularly on ECMWF some files are transferred to ECFS for a more permanent storage by the scripts scr/Archive_host1 and scr/Archive_logs. ","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Paths to archive ****\n# We need to define ARCHIVE early since it might be used further down\n\nARCHIVE_ROOT=$HM_DATA/archive # Archive root directory\nECFSLOC=ectmp # Archiving site at ECMWF-ECFS: \"ec\" or ECFS-TMP \"ectmp\"\nECFSGROUP=accord # Group in which to chgrp the ECMWF archive, \"default\" or \"accord\"\nEXTRARCH=$ARCHIVE_ROOT/extract # Archive for fld/obs-extractions","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"ARCHIVE_ROOT is the path to forecast file archive. Note that at ECMWF this directory is not a permanent storage\nEXTRARCH is the path to field extraction archive. Note that at ECMWF this directory is not a permanent storage\nECFSLOC Archiving site at ECMWF-ECFS (ectmp|ec) Note that files archived on ectmp will be lost after 90 days. If you wish your files to stay longer you should set ECFSLOC=ec. \nECFSGROUP Group in which to chgrp the ECMWF archive, (accord|default)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Running-Mode","page":"Experiment","title":"Running Mode","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Running mode ****\nRUNNING_MODE=research # Research or operational mode (research|operational)\n # operational implies that the suite will continue even if e.g.\n # observations are missing or assimilation fails\n\nSIMULATION_TYPE=nwp # Type of simulation (nwp|climate)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"RUNNING_MODE can be research or operational. Operational is more forgiving in the error handling and e.g. the assimilation will be skipped if Bator doesn't find any observations. Exceptions handled by the operational mode are written to $HM_DATA/severe_warnings.txt\nSIMULATION_TYPE Switch between nwp and climate type of simulation. The climate simulations are still in an experimental stage. ","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Model-domain-settings","page":"Experiment","title":"Model domain settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Horizontal domain settings. Further information is available here","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"\n# **** Model geometry ****\nDOMAIN=DKCOEXP # See definitions in scr/Harmonie_domains.pm\nTOPO_SOURCE=gmted2010 # Input source for orography. Available are (gmted2010|gtopo30)\nGRID_TYPE=LINEAR # Type of grid (LINEAR|QUADRATIC|CUBIC)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"DOMAIN defines your domain according to the settings in scr/Harmonie_domains.pm (DKCOEXP). The spectral truncation for your domain is determined from NLON and NLAT by scr/Harmonie_domains.pm. Further information on model domains are available here\nTOPO_SOURCE: Defines input source for model orography (gmted2010|gtopo30). Further information available here: hi-res topography\nGRID_TYPE: This variable is used to define the spectral truncation used (LINEAR|QUADRATIC|CUBIC). GRID_TYPE is used in scr/Climate and scr/Forecast","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Vertical-levels","page":"Experiment","title":"Vertical levels","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Set the number vertical levels to use. Further information is available here","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"VLEV=65 # Vertical level definition name\n # HIRLAM_60, MF_60,HIRLAM_40, or\n # BOUNDARIES = same number of levs as on boundary file.\n # See the other choices from scr/Vertical_levels.pl","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"VLEV is the name of the vertical levels defined in scr/Vertical_levels.pl (65). Further information is available here. If you intend to run upper air assimilation you must select the same domain and level definition for which you have derived structure functions. Read more Structure Functions","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Forecast-model","page":"Experiment","title":"Forecast model","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Higher level forecast model settings.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** High level forecast options ****\nNAMELIST_BASE=\"harmonie\" # Input for namelist generation (harmonie|alaro1)\n # harmonie : The default HARMONIE namelist base nam/harmonie_namelists.pm\n # alaro1 : For ALARO-1 baseline with only a few configurations available\n # nam/alaro1_namelists.pm\nDYNAMICS=\"nh\" # Hydrostatic or non-hydrostatic dynamics (h|nh)\nVERT_DISC=vfd # Discretization in the vertical (vfd,vfe)\n # Note that vfe does not yet work in non-hydrostatic mode\nPHYSICS=\"arome\" # Main model physics flag (arome|alaro)\nSURFACE=\"surfex\" # Surface flag (old_surface|surfex)\nDFI=\"none\" # Digital filter initialization (idfi|fdfi|none)\n # idfi : Incremental dfi\n # fdfi : Full dfi\n # none : No initialization (AROME case)\nLSPBDC=no # Spectral boundary contions option off(no) | on(yes)\nLGRADSP=yes # Apply Wedi/Hortal vorticity dealiasing\nLUNBC=yes # Apply upper nested boundary condition","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"NAMELIST_BASE: Two different namelist sets are available (harmonie|alaro).\nDYNAMICS: Hydrostatic or non-hydrostatic dynamics (h|nh)\nVERT_DISC: Vertical discretization (vfd,vfe)\nPHYSICS: HARMONIE uses either AROME or ALARO for its forecast model physics (arome|alaro)\nSURFACE: Surface physics flag to use either the SURFEX or the ALADIN surface scheme(surfex|old_surface)\nDFI: Digital filter initialization switch (idfi|fdfi|none). idfi - incremental dfi, fdfi - full dfi, none - no initialization. See Digital filter for more information\nLSPBDC: Specify whether the boundary conditions are spectral or not (yes|no)\nLGRADSP: Switch to apply vorticity dealiasing (yes|no)\nLUNBC: Switch to apply upper boundary conditions (yes|no)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Physics","page":"Experiment","title":"Physics","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Physics options.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# Highlighted physics switches\nCISBA=\"3-L\" # Type of ISBA scheme in SURFEX. Options: \"3-L\" and \"2-L\".\nCROUGH=\"NONE\" # SSO scheme used in SURFEX \"NONE\"|\"'Z01D'\"|\"'BE04'\"\nSURFEX_SEA_ICE=\"none\" # Treatment of sea ice in surfex (none|sice)\nMASS_FLUX_SCHEME=edmfm # Version of EDMF scheme (edkf|edmfm)\n # Only applicable if PHYSICS=arome\n # edkf is the AROME-MF version\n # edmfm is the KNMI implementation of Eddy Diffusivity Mass Flux scheme for Meso-scale\nHARATU=\"yes\" # Switch for HARATU turbulence scheme (no|yes)\nALARO_VERSION=0 # Alaro version (1|0)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"CISBA: If SURFACE is set to surfex this selects the type of ISBA scheme to use in SURFEX. (3-L|2-L). See src/surfex_namelists.pm Namelists\nCROUGH: If SURFACE is set to surfex this selects the sub-grid scale orography scheme used in SURFEX. (NONE|Z01D|BE04). See src/surfex_namelists.pm Namelist\nSURFEX_SEA_ICE: Treatment of sea ice in surfex (none|sice). See nam/surfex_namelists.pm\nMASS_FLUX_SCHEME: If PHYSICS is set to arome choose the mass flux scheme to be used by AROME; edkf to use the AROME-MF scheme or edmfm to use the KNMI developed scheme\nHARATU: Switch to use the HARATU turbulence scheme\nALARO_VERSION: If PHYSICS is set to alaro select version of ALARO to use (0|1)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Assimilation","page":"Experiment","title":"Assimilation","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Data assimilation settings. More assimilation related settings, in particular what observations to assimilate, can be found in src/include.ass","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Assimilation ****\nANAATMO=3DVAR # Atmospheric analysis (3DVAR|4DVAR|blending|none)\nANASURF=CANARI_OI_MAIN # Surface analysis (CANARI|CANARI_OI_MAIN|CANARI_EKF_SURFEX|none)\n # CANARI : Old style CANARI\n # CANARI_OI_MAIN : CANARI + SURFEX OI\n # CANARI_EKF_SURFEX : CANARI + SURFEX EKF ( experimental )\n # none : No surface assimilation\nANASURF_MODE=\"before\" # When ANASURF should be done\n # before : Before ANAATMO\n # after : After ANAATMO\n # both : Before and after ANAATMO (Only for ANAATMO=4DVAR)\nINCV=\"1,1,1,1\" # Active EKF control variables. 1=WG2 2=WG1 3=TG2 4=TG1\nINCO=\"1,1,0\" # Active EKF observation types (Element 1=T2m, element 2=RH2m and element 3=Soil moisture) \n\nSST=BOUNDARY # Which SST fields to be used in surface analysis\n # BOUNDARY : SST interpolated from the boundary file. ECMWF boundaries utilize a special method.\n # HIRLAM and HARMONIE boundaries applies T0M which should be SST over sea.\nLSMIXBC=no # Spectral mixing of LBC0 file before assimilation\n[ \"$ANAATMO\" = 3DVAR] && LSMIXBC=yes\nJB_INTERPOL=no # Interpolation of structure functions from a pre-defined domain to your domain\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"ANAATMO: Atmospheric analysis (3DVAR|4DVAR|blending|none)\nANASURF: Surface analysis (CANARI|CANARIOIMAIN|CANARIEKFSURFEX|none). See nam/surfex_namelists.pm\nANASURF_MODE:When the surface should be called (before|after|both)\nINCV: Active EKF control variables. 1=WG2 2=WG1 3=TG2 4=TG1 (0|1)\nINCO: Active EKF observation types (Element 1=T2m, element 2=RH2m and element 3=Soil moisture) (0|1)\nSST: which sea surface temperature field to use in the surface analysis\nLSMIXBC Spectral mixing of LBC0 file before assimilation (no|yes)\nJB_INTERPOL Interpolation of structure functions from a pre-defined domain to your domain (no|yes). Note that this has to be used with some caution.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Observations","page":"Experiment","title":"Observations","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Observations ****\nOBDIR=$HM_DATA/observations # Observation file directory\nRADARDIR=$HM_DATA/radardata # Radar observation file directory\nSINGLEOBS=no # Run single obs experiment with observation created by scr/Create_single_obs (no|yes)\n\nUSE_MSG=no # Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"OBDIR: Defines the directory that your (BUFR) observation files (obYYYYMMDDHH) are to read from\nRADARDIR: Defines the directory that your (OPERA HDF5) radar observation files are to be read from. BALTRAD OPERA HDF5, MF BUFR and LOCAL files are treated in scr/Prepradar\nSINGLEOBS Run single obs experiment with synthetic observation created by scr/Create_single_obs scr/Create_single_obs (no|yes)\nUSE_MSG: Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes), expects MSGcloudYYYYMMDDHH.grib in $OBDIR","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#4DVAR-settings","page":"Experiment","title":"4DVAR settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"4DVAR settings (experimental)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** 4DVAR ****\nNOUTERLOOP=1 # 4DVAR outer loops, need to be 1 at present\nILRES=2,2 # Resolution (in parts of full) of outer loops\nTSTEP4D=360,360 # Timestep length (seconds) of outer loops TL+AD\nTL_TEST=yes # Only active for playfile tlad_tests\nAD_TEST=yes # Only active for playfile tlad_tests","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"NOUTERLOOP: Number of outer loops, need to be 1 at present\nILRES: Resolution (in parts of full) of outer loops\nTSTEP4D: Timestep length (seconds) of outer loops TL+AD\nTL_TEST: Only active for playfile tlad_tests (yes|no)\nAD_TEST: Only active for playfile tlad_tests (yes|no)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#digital-filter","page":"Experiment","title":"Digital filter settings ","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Digital filter initialization settings if DFI is not equal to \"none\"","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** DFI setting ****\nTAUS=5400 # cut-off frequency in second\nTSPAN=5400 # 7200s or 5400s","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"TAUS cut-off frequency in seconds \nTSPAN length of DFI run in seconds","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Boundaries-and-initial-conditions","page":"Experiment","title":"Boundaries and initial conditions","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Settings for generation of lateral boundaries conditions for HARMONIE. Further information is available here","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Lateral boundary conditions ****\nHOST_MODEL=\"ifs\" # Host model (ifs|hir|ald|ala|aro)\n # ifs : ecmwf data\n # hir : hirlam data\n # ald : Output from aladin physics\n # ala : Output from alaro physics\n # aro : Output from arome physics\n\nHOST_SURFEX=\"no\" # yes if the host model is run with SURFEX\nSURFEX_INPUT_FORMAT=lfi # Input format for host model run with surfex (lfi|fa)\n\nNBDMAX=12 # Number of parallel interpolation tasks\nBDLIB=ECMWF # Boundary experiment, set:\n # ECMWF to use MARS data\n # RCRa to use RCRa data from ECFS\n # Other HARMONIE/HIRLAM experiment\n\nBDDIR=$HM_DATA/${BDLIB}/archive/@YYYY@/@MM@/@DD@/@HH@ # Boundary file directory,\n # For more information, read in scr/Boundary_strategy.pl\n\nSST_SOURCES=$HOST_MODEL # List of external SST sources like $HOST_MODEL|HIROMB|NEMO|ROMS|ECE\n # See util/gl/ala/merge_ocean.F90 for more details\nSST_IS_LSM=\"auto\" # Switch for using SST as LSM (lsm|sst|auto)\n\nINT_BDFILE=$WRK/ELSCF${CNMEXP}ALBC@NNN@ # Interpolated boundary file name and location\n\nBDSTRATEGY=simulate_operational # Which boundary strategy to follow\n # as defined in scr/Boundary_strategy.pl\n #\n # available : Search for available files in BDDIR, try to keep forecast consistency\n # This is ment to be used operationally\n # simulate_operational : Mimic the behaviour of the operational runs using ECMWF LBC,\n # i.e. 6 hour old boundaries\n # same_forecast : Use all boundaries from the same forecast, start from analysis\n # analysis_only : Use only analysises as boundaries\n # era : As for analysis_only but using ERA interim data\n # latest : Use the latest possible boundary with the shortest forecast length\n # RCR_operational : Mimic the behaviour of the RCR runs, ie\n # 12h old boundaries at 00 and 12 and\n # 06h old boundaries at 06 and 18\n # enda : use ECMWF ENDA data for running ensemble data assimilation\n # or generation of background statistic.\n # Note that only LL up to 9h is supported\n # with this you should set your ENSMSEL members\n # eps_ec : ECMWF EPS members (on reduced gaussian grid)\n # : Only meaningful with ENSMSEL non-empty, i.e., ENSSIZE > 0\n\nBDINT=1 # Boundary interval in hours\n\nSURFEX_PREP=\"yes\" # Use offline surfex prep facility (Alt. gl + Fullpos + prep )","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"HOST_MODEL defines the host model that provides the lateral boundaries conditions for your experiment\nhir for HIRLAM.\nald for ALADIN \nala for ALARO\naro for AROME\nifs for ECMWF-IFS. \nHOST_SURFEX Set to yes if host model runs with SURFEX. (no|yes)\nSURFEX_INPUT_FORMAT Input format for host model run with surfex (lfi|fa)\nBDLIB is the experiment to be used as boundaries. Possible values, ECMWF for IFS from MARS (default), RCRa for HIRLAM-RCR from ECFS or other HARMONIE experiment. \nBDDIR is the boundary file directory. The possible date information in the path must be given by using UPPER CASE letters (@YYYY@=year,@MM@=month,@DD@=day,@HH@=hour,@FFF@=forecast length). \nBDSTRATEGY Which boundary strategy to follow i.e. How to find the right boundaries with the right age and location. Read more\nBDINT is boundary interval in hours.\nBDCLIM is the path to climate files corresponding the boundary files, when nesting HARMONIE to HARMONIE.\nINT_BDFILE is the name and location of the interpolated boundary files. These files are removed every cycle, but if you wish to save them you can specify a more permanent location here. By setting INT_BDFILE=$ARCHIVE the interpolated files will be stored in your archive directory.\nNBDMAX Number of parallel boundary interpolation tasks in mSMS. The current default value is 12.\nSST_SOURCES defines the host model used for SST & SIC\nSST_IS_LSM in interpolation of SST/SIC from host to HARMONIE grid, use SST (with missing values above land) to derive LSM, or use the actual provided LSM. The default, auto, makes a smart guess based on host model.\nSURFEX_PREP Use SURFEX tool PREP instead of gl+FULLPOS to prepare SURFEX initial conditions. This is now the default. The gl+FULLPOS version is still working but will not be maintained in the future (no|yes)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Read more about the boundary file preparation here.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Ensemble-mode-settings","page":"Experiment","title":"Ensemble mode settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# *** Ensemble mode general settings. ***\n# *** For member specific settings use msms/harmonie.pm ***\nENSMSEL= # Ensemble member selection, comma separated list, and/or range(s):\n # m1,m2,m3-m4,m5-m6:step mb-me == mb-me:1 == mb,mb+1,mb+2,...,me\n # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.\nENSINIPERT= # Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv.\nENSCTL= # Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.\nENSBDMBR= # Which host member is used for my boundaries? Use harmonie.pm to set.\nENSMFAIL=0 # Failure tolerance for all members.\nENSMDAFAIL=0 # Failure tolerance for members doing own DA. Not implemented.\nSLAFK=1.0 # best set in harmonie.pm\nSLAFLAG=0 # --- \" ---\nSLAFDIFF=0 # --- \" ---\n\n# *** This part is for EDA with observations perturbation\nPERTATMO=none # ECMAIN : In-line observation perturbation using the default IFS way.\n \t\t\t# CCMA : Perturbation of the active observations only (CCMA content)\n\t \t\t# before the Minimization, using the PERTCMA executable.\n \t\t\t# none : no perturbation of upper-air observations\n\nPERTSURF=none # ECMA : perturb also the surface observation before Canari (recommended\n \t\t\t# : for EDA to have full perturbation of the initial state).\n # model : perturb surface fields in grid-point space (recursive filter)\n\t\t\t # none : no perturbation for surface observations.\n\nFESTAT=no # Extract differences and do Jb calculations (no|yes)\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"ENSMSEL Ensemble member selection, comma separated list, and/or range(s):\n # m1,m2,m3-m4,m5-m6:step mb-me == mb-me:1 == mb,mb+1,mb+2,...,me\n # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.\nENSINIPERT Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv, slaf.\nENSMFAIL Failure tolerance for all members. Not yet implemented.\nENSMDAFAIL Failure tolerance for members doing own DA. Not yet implemented.\nENSCTL Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.\nENSBDMBR Which host member is used for my boundaries? Use harmonie.pm to set.\nSLAFK Perturbation coefficients for SLAF, experimental\nSLAFLAG Time lag for boundaries in SLAG, experimental","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"For member dependent settings see msms/harmonie.pm.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"PERTATMO Observation perturbation with three options \nECMA : In-line observation perturbation using the default IFS way.\nCCMA : Perturbation of the active observations only (CCMA content) before the Minimization, using the PERTCMA executable.\nnone : no perturbation of upper-air observations\nPERTSURF Perturbation of surface observations before Canari (recommended for EDA to have full perturbation of the initial state) (no|yes).","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"FESTAT Extract differences and do Jb calculations (no|yes). Read more about the procedure here.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Aerosol-choices","page":"Experiment","title":"Aerosol choices","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"USEAERO influences import of near-real-time aerosol via boundaries and use of aerosol in the forecast model. It selects use of n.r.t, climatology or no aerosol. When USEAERO=climaero, CAERO selects data for monthly climate file generation from existing sources (4 species of Tegen or CAMS AOD@550nm or 11 species of CAMS vertically integrated mass). CAMS aerosol mass climatology [camscms] and MOCAGE n.r.t. [mocanrt] are currently not available for within HARMONIE forecast system. ","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Aerosol choices [USEAERO implies aerosol usage in physics via forecast_model_settings!] ****\nUSEAERO=camsnrt # Aerosol usage: camsnrt | climaero | noaero | [mocanrt]\nCAERO=tegenaod # Aerosol climatology generation: tegenaod | [camscms not yet available] ","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Climate-file-settings","page":"Experiment","title":"Climate file settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Climate file generation settings. Further information is available here","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Climate files ****\nCREATE_CLIMATE=${CREATE_CLIMATE-yes} # Run climate generation (yes|no)\nCLIMDIR=$HM_DATA/climate/$DOMAIN # Climate files directory\nBDCLIM=$HM_DATA/${BDLIB}/climate # Boundary climate files (ald2ald,ald2aro)\n # This should point to intermediate aladin\n # climate file in case of hir2aro,ifs2aro processes.\nECOCLIMAP_PARAM_BINDIR=$HM_DATA/climate # Binary cover param files directory\n\n# Physiography input for SURFEX\nECOCLIMAP_VERSION=SG # Version of ECOCLIMAP for surfex\n # Available versions are 1.1-1.5,2.0-2.2,2.2.1,2.5_plus and SG\n # FLake requires 2.5_plus or SG\nXSCALE_H_TREE=1.0 # Scale the tree height with this factor\n# Activate inclusion of fake trees for open land VEGTYPEs. The vector positions represent:\n# 1 NVT_BOGR, 2 NVT_GRAS, 3 NVT_TROG, 4 NVT_C3W, 5 NVT_C3S, 6 NVT_C4, 7 NVT_FLGR\nLFAKETREE=.F.,.F.,.F.,.F.,.F.,.F.,.F.\nLDB_VERSION=3.0 # Lake database version.\nSOIL_TEXTURE_VERSION=SOILGRID # Soil texture input data FAO|HWSD_v2|SOILGRID|SOILGRID_v2\n\n# Path to pre-generated domains, in use if USE_REF_CLIMDIR=yes set in Env_system\n# Saves time for quick experiments\nREF_CLIMDIR=ec:/hlam/harmonie_climdir/release-43h2.1.1/$DOMAIN/$GRID_TYPE/$ECOCLIMAP_VERSION\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"CREATE_CLIMATE: Run climate generation (yes|no). If you already have a full set of climate files generated in CLIMDIR you can set this flag to no for a faster run.\nCLIMDIR: path to the generated climate files for your specific domain. The input data for the climate generation is defined by HM_CLDATA defined in Env_system -> config-sh/config.YOURHOST\nBDCLIM: path to intermediate climate files\nECOCLIMAP_PARAM_BINDIR: Direcotry where the binray version of ECOCLIMAP 1st generation parameter files will be stored.\nECOCLIMAP_VERSION is the version of ECOCLIMAP to be used with SURFEX. Available versions are 1.1-1.5,2.0-2.2,2.2.1,2.5_plus,SG. See surfex_namelists.pm Namelist\nXSCALE_H_TREE: A factor that scales the original tree height that comes from the database.\nLFAKETREE: Only relevant for ECOCLIMAP_VERSION=SG. It activates the inclusion of fake trees for open land VEGTYPEs to increase the roughness length. The vector positions represent 1 NVT_BOGR, 2 NVT_GRAS, 3 NVT_TROG, 4 NVT_C3W, 5 NVT_C3S, 6 NVT_C4, 7 NVT_FLGR.\nLDB_VERSION: Specifies the version of the Global Lake Database used for FLake.\nSOIL_TEXTURE_VERSION Soil texture input data (FAO|HWSD_v2|SOILGRID|SOILGRID_v2). See surfex_namelists.pm more info.\nREF_CLIMDIR: Specifies the location of possible pre-generated domains. Is used if USE_REF_CLIMDIR=yes set in Env_system.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Archiving-settings","page":"Experiment","title":"Archiving settings","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Archiving settings ****\nARCHIVE_ECMWF=yes # Archive to $ECFSLOC at ECMWF (yes|no)\n# Archiving selection syntax, settings done below\n#\n# [fc|an|pp]_[fa|gr|nc] : Output from\n# an : All steps from upper air and surface analysis\n# fc : Forecast model state files from upper air and surfex\n# pp : Output from FULLPOS and SURFEX_LSELECT=yes (ICMSHSELE+NNNN.sfx)\n# in any of the formats if applicable\n# fa : FA files\n# gr : GRIB[1|2] files\n# nc : NetCDF files\n# sqlite|odb|VARBC|bdstrategy : odb and sqlite files stored in odb_stuff.tar\n# fldver|ddh|vobs|vfld : fldver/ddh/vobs/vfld files\n# climate : Climate files from PGD and E923\n# Some macros\n# odb_stuff=odb:VARBC:bdstrategy:sqlite\n# verif=vobs:vfld\n# fg : Required files to run the next cycle","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Forecast-output","page":"Experiment","title":"Forecast output","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Cycles to run, and their forecast length ****\n\nTFLAG=\"h\" # Time flag for model output. (h|min)\n # h = hour based output\n # min = minute based output\n\n\n# The unit of HWRITUPTIMES, FULLFATIMES, ..., SFXFWFTIMES should be:\n# - hours if TFLAG=\"h\"\n# - minutes if TFLAG=\"min\"\n\n# Writeup times of # history,surfex and fullpos files\n# Comma separated list, and/or range(s) like:\n# t1,t2,t3-t4,t5-t6:step tb-te == tb-te:1 == tb,tb+1,tb+2,...,te\n\nif [ -z \"$ENSMSEL\"] ; then\n # Standard deterministic run\n HH_LIST=\"00-21:3\" # Which cycles to run, replaces FCINT\n LL_LIST=\"12,3\" # Forecast lengths for the cycles [h], replaces LL, LLMAIN\n # The LL_LIST list is wrapped around if necessary, to fit HH_LIST\n HWRITUPTIMES=\"00-21:3,24-60:6\" # History file output times\n FULLFAFTIMES=$HWRITUPTIMES # History FA file IO server gather times\n PWRITUPTIMES=\"00-60:3\" # Postprocessing times\n PFFULLWFTIMES=-1 # Postprocessing FA file IO server gathering times\n VERITIMES=\"00-60:1\" # Verification output times, may change PWRITUPTIMES\n SFXSELTIMES=$HWRITUPTIMES # Surfex select file output times\n # Only meaningful if SURFEX_LSELECT=yes\n SFXSWFTIMES=-1 # SURFEX select FA file IO server gathering times\n SWRITUPTIMES=\"00-06:3\" # Surfex model state output times\n SFXWFTIMES=$SWRITUPTIMES # SURFEX history FA file IO server gathering times\n if [ \"$SIMULATION_TYPE\" == climate]; then #Specific settings for climate simulations\n HWRITUPTIMES=\"00-760:6\" # History file output times\n FULLFAFTIMES=\"00-760:24\" # History FA file IO server gather times\n PWRITUPTIMES=$HWRITUPTIMES # Postprocessing times\n VERITIMES=$HWRITUPTIMES # Verification output times, may change PWRITUPTIMES\n SFXSELTIMES=$HWRITUPTIMES # Surfex select file output times - Only meaningful if SURFEX_LSELECT=yes\n SWRITUPTIMES=\"00-760:12\" # Surfex model state output times\n SFXWFTIMES=$SWRITUPTIMES # SURFEX history FA file IO server gathering times\n fi\n\n ARSTRATEGY=\"climate:fg:verif:odb_stuff: \\\n [an|fc]_fa:pp_grb\" # Files to archive on ECFS, see above for syntax\n\nelse\n # EPS settings\n HH_LIST=\"00-21:3\" # Which cycles to run, replaces FCINT\n LL_LIST=\"36,3,3,3\" # Forecast lengths for the cycles [h], replaces LL, LLMAIN\n HWRITUPTIMES=\"00-06:3\" # History file output times\n FULLFAFTIMES=$HWRITUPTIMES # History FA file IO server gather times\n PWRITUPTIMES=\"00-48:1\" # Postprocessing times\n PFFULLWFTIMES=-1 # Postprocessing FA file IO server gathering times\n VERITIMES=\"00-60:3\" # Verification output times, may change PWRITUPTIMES\n SFXSELTIMES=$HWRITUPTIMES # Surfex select file output times\n # Only meaningful if SURFEX_LSELECT=yes\n SFXSWFTIMES=-1 # SURFEX select FA file IO server gathering times\n SWRITUPTIMES=\"00-06:3\" # Surfex model state output times\n SFXWFTIMES=$SWRITUPTIMES # SURFEX history FA file IO server gathering times\n\n ARSTRATEGY=\"climate:fg:verif:odb_stuff: \\\n an_fa:pp_grb\" # Files to archive on ECFS, see above for syntax\n\nfi\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"The writeup times of model output can be defined as a space separated list or as a fixed frequency for model history files, surfex files and postprocessed files respectively. The unit of the steps of WRITUPTIMES, SWRITUPTIMES, PWRITUPTIMES and OUTINT should be in hours or minutes depending on the TFLAG Regular output interval can be switched on by setting OUTINT>0. Consequently, OUTINT will override the WRITUPTIMES lists!","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"TFLAG: Time flag for model output. Hourly or minute-based output (h|min)\nHWRITUPTIMES: Output list for history files. Default is 00-21:3,24-60:6 which will output files every 3 hours for 00-21 and every 6 hours for 24-60.\nVERITIMES: Output list for verification files. Default is 00-60:1 which will produce file every 1 hour for 00-60\nSWRITUPTIMES Output list for surfex files. Default is 00-06:3 which output a SURFEX file every 3 hours for 00-06.\nPWRITUPTIMES Output list for fullpos (post-processed) files. Default is 00-21:3,24-60:6 which will output files every 3 hours for 00-21 and every 6 hours for 24-60.","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"SURFEX_LSELECT=\"yes\" # Only write selected fields in surfex outpute files. (yes|no)\n # Check nam/surfex_selected_output.pm for details.\n # Not tested with lfi files.\nINT_SINI_FILE=$WRK/SURFXINI.fa # Surfex initial file name and location\n\n# **** Postprocessing/output ****\nIO_SERVER=yes # Use IO server (yes|no). Set the number of cores to be used\n # in your Env_submit\nIO_SERVER_BD=yes # Use IO server for reading of boundary data\nPOSTP=\"inline\" # Postprocessing by Fullpos (inline|offline|none).\n # See Setup_postp.pl for selection of fields.\n # inline: this is run inside of the forecast\n # offline: this is run in parallel to the forecast in a separate task\n\nFREQ_RESET_TEMP=3 # Reset frequency of max/min temperature values in hours, controls NRAZTS\nFREQ_RESET_GUST=1 # Reset frequency of max/min gust values in hours, controls NXGSTPERIOD\n # Set to -1 to get the same frequency _AND_ reset behaviour as for min/max temperature\n # See yomxfu.F90 for further information.\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"SURFEX_LSELECT: Switch to write a selection of fields in SURFEX output files (yes|no). See surfex_selected_output.pm for more info. Namelist\nINT_SINI_FILE: name and location of the initial SURFEX file\nARCHIVE_ECMWF: archive files to ECFSLOC at ECMWF (yes|no)\nIO_SERVER: Use IO server (yes|no). If set to \"yes\" changes may be required in Env_submit -> config-sh/submit.YOURHOUST\nPOSTP: Postprocessing by Fullpos (inline|offline|none).\nFREQ_RESET_[TEMP|GUST]: Reset frequency of max/min values in hours, controls NRAZTS. Default is every 3/1 hours","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** GRIB ****\nCONVERTFA=yes # Conversion of FA file to GRIB/nc (yes|no)\nARCHIVE_FORMAT=GRIB1 # Format of archive files (GRIB1|GRIB2|nc). nc format yet only available in climate mode\nNCNAMES=nwp # Nameing of NetCDF files follows (climate|nwp) convention.\nRCR_POSTP=no # Produce a subset of fields from the history file for RCR monitoring\n # Only applicable if ARCHIVE_FORMAT=GRIB\nMAKEGRIB_LISTENERS=1 # Number of parallel listeners for Makegrib\n # Only applicable if ARCHIVE_FORMAT=GRIB\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"More options on fullpos postprocessing can be found in scr/Select_posp.pl","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"CONVERTFA: Conversion of FA files to GRIB or NetCDF (yes|no)\nARCHIVE_FORMAT: Format of archive files (GRIB1|nc). NetCDF format yet only available in climate mode\nRCR_POSTP: Produce a subset of fields from the history file for RCR monitoring (yes|no). This is only applicable if ARCHIVE_FORMAT=GRIB1|GRIB2\nMAKEGRIB_LISTENERS: Number of parallel listeners for Makegrib. Only applicable if ARCHIVE_FORMAT=GRIB1|GRIB2","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"More options on file conversion can be found in scr/Makegrib","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#DDH-files","page":"Experiment","title":"DDH files","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** DDH ****\nUSEDDH=\"yes\" # Use DDH. (yes|no)\n","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Permits to include the namelist NAMDDH in the forecast namelist.\nThe DDH files will be saved in the ARCHIVE directory.\nTo archive the DDH files to ECFSLOC at ECMWF, include the option \"ddh\" in ARSTRATEGY\nRead more in DDH in HARMONIE-AROME","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Verification-and-monitoring","page":"Experiment","title":"Verification and monitoring","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# **** Verification extraction ****\nOBSEXTR=yes # Extract observations from BUFR (yes|no)\nFLDEXTR=yes # Extract model data for verification from model files (yes|no)\nFLDEXTR_TASKS=1 # Number of parallel tasks for field extraction\nVFLDEXP=$EXP # Experiment name on vfld files\nSCREXTR=no # Use Screening (NCONF=002) to produce O-F data\nSCREXTR_TASKS=1 # Number of parallel tasks for O-F extraction\nFGREFEXP=${FGREFEXP-undef} # reference experiment name for FirstGuess\nOBREFEXP=${OBREFEXP-undef} # reference experiment name for ODBs","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"OBSEXTR: Extract observations for verification from BUFR (yes|no)\nFLDEXTR: Extract model data for verification from model files (yes|no)\n*FLDEXTR_TASKS: Number of parallel tasks for field extraction\nVFLDEXP: Change vfld file name to this string\nSCREXTR : Switch on extraction of O-F data for verification using Screening (NCONF=002)\nSCREXTR_TASKS : Number of parallel tasks for O-F extraction\nFGREFEXP=${FGREFEXP-undef} : reference experiment name for FirstGuess (useful with PLAYFILE=allobsver)\nOBREFEXP=${OBREFEXP-undef} : reference experiment name for ODBs (useful with PLAYFILE=allobsver)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Read more about the verification package here","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Field-verification","page":"Experiment","title":"Field verification","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# *** Field verification ***\nFLDVER=no # Main switch for field verification (yes|no)\nFLDVER_HOURS=\"06 12 18 24 30 36 42 48\" # Hours for field verification","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"FLDVER Main switch for field verification (yes|no). The field verification extracts some selected variables for calculation of bias, rmse, stdv and averages on the model grid.\nFLDVER_HOURS Hours for field verification","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"More options on field verification can be found in scr/Fldver and scr/AccuFldver","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Observation-monitoring-and-general-diagnostics","page":"Experiment","title":"Observation monitoring and general diagnostics","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# *** Observation monitoring ***\nOBSMONITOR=obstat # Create Observation statistics plots\n # Format: OBSMONITOR=Option1:Option2:...:OptionN\n # obstat: Daily usage maps and departures\n # no: Nothing at all\n #\n # obstat is # only active if ANAATMO != none\nOBSMON_SYNC=no # Sync obsmn sqlite tables from HOST1 (if set) to HOST0 (yes|no)","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"OBSMONITOR Selection for observation statistics plots","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"obstat Observations usage. Read more here.\nno No monitoring","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"Note that this is only active if ANAATMO != none","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Mail-addresses","page":"Experiment","title":"Mail addresses","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"# Recipient(s) to send mails to (you@work,you@home)\nMAIL_ON_ABORT= # when a task aborts\nMAIL_TESTBED= # testbed results summary","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"MAIL_ON_ABORT e-mail address to send a mail to if a task fails in ecFlow\nMAIL_TESTBED e-mail address to send a mail to with a summary of the testbed results","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/#Testbed","page":"Experiment","title":"Testbed","text":"","category":"section"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"export TESTBED_LIST=\"AROME AROME_1D AROME_3DVAR \\\n AROME_BD_ARO AROME_BD_ARO_IO_SERV \\\n HarmonEPS HarmonEPS_IFSENS \\\n AROME_CLIMSIM\"","category":"page"},{"location":"ExperimentConfiguration/ConfigureYourExperiment/","page":"Experiment","title":"Experiment","text":"TESTBED_LIST contains the configurations that will be run in the testbed","category":"page"},{"location":"DataAssimilation/MTEN/#Moist-Total-Energy-Norm-(MTEN)-diagnostic","page":"MTEN","title":"Moist Total Energy Norm (MTEN) diagnostic","text":"","category":"section"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"MTEN shows the sensitivity of the forecast model to different observations withdrawn from the full analysis system. There are two ways of computing the MTEN diagnostic: A special branch was created in CY40 (see below) where the MTEN diagnostic can be requested. This approach uses Harmonie ensemble system to perform series of observation denial independent runs. This means that the following settings are used in msms/harmonie.pm","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":" 'ENSBDMBR' => [ 0 ],\n 'ENSCTL' => [ '000', '001', '002', '003', '004', '005', '006', '007' ],\n 'AIRCRAFT_OBS' => [ 0, 1, 1, 1, 1, 1, 1, 1],\n 'BUOY_OBS' => [ 1, 0, 1, 1, 1, 1, 1, 1],\n 'AMSUA_OBS' => [ 1, 1, 0, 1, 1, 1, 1, 1],\n 'AMSUB_OBS' => [ 1, 1, 1, 0, 1, 1, 1, 1],\n 'POL_OBS' => [ 1, 1, 1, 1, 0, 1, 1, 1],\n 'HRW_OBS' => [ 1, 1, 1, 1, 1, 0, 1, 1],\n 'TEMP_OBS' => [ 1, 1, 1, 1, 1, 1, 0, 1],\n 'IASI_OBS' => [ 1, 1, 1, 1, 1, 1, 1, 0],","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"In this particular example, we are interested in the impact of aircraft, Buoy, amsu-a, amsu-b/mhs, polar winds, high-resolution geowinds, radiosonde, and iasi observations. This setting is activated in config.exp with the following choice:","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"export REFEXP DOMTEN\nexport SYNOP_OBS=1 # All synop\nexport AIRCRAFT_OBS=1 # AMDAR, AIREP, ACARS\nexport BUOY_OBS=1 # Buoy\nexport POL_OBS=1 # Satob polar winds\nexport GEO_OBS=0 # Satob geo winds\nexport HRW_OBS=1 # Satob HRWind\nexport TEMP_OBS=1 # TEMP, TEMPSHIP\nexport PILOT_OBS=1 # Pilot, Europrofiler\nexport SEVIRI_OBS=0 # Seviri radiances\nexport AMSUA_OBS=1 # AMSU-A\nexport AMSUB_OBS=1 # AMSU-B, MHS\nexport IASI_OBS=1 # IASI\nexport PAOB_OBS=0 # PAOB not defined everywhere\nexport SCATT_OBS=0 # Scatterometer data not defined everywhere\nexport LIMB_OBS=0 # LIMB observations, GPS Radio Occultations\nexport RADAR_OBS=0 # Radar\nexport GNSS_OBS=0 # GNSS","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"Where REFEXP is the reference experiment (see below), and DOMTEN (yes,no) is activate the MTEN choice when fetching the First-guess and the VarBC files for the MTEN computation, as follows: in /scr/Fetch_assim_data:","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"if [ ${DOMTEN} = \"yes\" ]; then\n HM_REFEXP=/sbt/harmonie/$REFEXP\n adir=${ECFSLOC}:${HM_REFEXP}/$YY/$MM/$DD/$HH\nelse\n adir=$( ArchDir $HM_EXP $YY $MM $DD $HH )\nfi","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"in scr/FirstGuess (be careful this happens twice in the script)","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"if [ ${DOMTEN} = \"yes\" ]; then\n HM_REFEXP=/sbt/harmonie/$REFEXP\n adir=${ECFSLOC}:${HM_REFEXP}/$FGYY/$FGMM/$FGDD/$FGHH\nelse\n adir=$( ArchDir $HM_EXP $FGYY $FGMM $FGDD $FGHH )\nfi","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"The MTEN can be also computed using a deterministic system. In this case, you need to take care of the First-guess and the VarBC files, which should come from the reference experiment. You need to carefully set the choice of the observations to be tested in scr/include.ass. In this case, you need to adapt the above Fetch_assim_data and FirstGuess scripts accordingly.","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"The MTEN diagnostic, similarly to DFS, is case sensitive, so it's better to male the computation with times and dates enough distant (by 5 days or more).","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"The MTEN can be computed the example below:","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":" for EXP in EXP1 EXP2;\n for RANGE in 06 12 18 24 30 36 42 48;\n do\n\n YY=`echo $DTG | cut -c 1-4`\n mm=`echo $DTG | cut -c 5-6`\n dd=`echo $DTG | cut -c 7-8`\n hh=`echo $DTG | cut -c 9-10`\n # -- Get the FA files\n # ===================\n ecp ec:/$USER/harmonie/$REFEXP/$YY/$mm/$dd/$hh/ICMSHHARM+00$RANGE ./FAREF$RANGE\n ecp ec:/$USER/harmonie/${EXP}/$YY/$mm/$dd/$hh/ICMSHHARM+00$RANGE ./${EXP}$RANGE\n $MTEN_BIN/MTEN ./FAREF$RANGE ./${EXP}$RANGE\n\n done\n done\n","category":"page"},{"location":"DataAssimilation/MTEN/","page":"MTEN","title":"MTEN","text":"See (Storto and Randriamampianina, 2010) for more details.","category":"page"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/#canari_ekf_surfex","page":"CANARI EKF SURFEX","title":"Surface variables assimilated / read in EKF_MAIN","text":"","category":"section"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/","page":"CANARI EKF SURFEX","title":"CANARI EKF SURFEX","text":"From cycle 37 EKF is implemented in research/development mode. The following tiles and variables are modified:","category":"page"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/#NATURE","page":"CANARI EKF SURFEX","title":"NATURE","text":"","category":"section"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/#WG2/WG1/TG2/TG1","page":"CANARI EKF SURFEX","title":"WG2/WG1/TG2/TG1","text":"","category":"section"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/","page":"CANARI EKF SURFEX","title":"CANARI EKF SURFEX","text":"The uppermost two levels in ISBA of soil moisture and temperature are assimilated. With CANARI/CANARI_OI_MAIN by an OI method, by CANARI_SURFEX_EKF by an Extended Kalman Filter (EKF).","category":"page"},{"location":"DataAssimilation/Surface/CANARI_EKF_SURFEX/","page":"CANARI EKF SURFEX","title":"CANARI EKF SURFEX","text":"For 2012 it is planned to have a re-writing of OI_MAIN/EKF_MAIN to be the same binary in order to be able to apply the work done for OI_MAIN in EKF_MAIN and thus reduce the maintainance costs.","category":"page"},{"location":"DataAssimilation/StructureFunctions/#structure-functions","page":"Structure functions","title":"Derivation of Structure Functions","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/#General","page":"Structure functions","title":"General","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"For each new model domain, in order to carry out upper air data assimilation (3DVAR or 4DVAR) one needs to generate background error covariances (generally referred to as structure functions). The recommended procedure is to use a two step approach. In step one you generate background error statistics by downscaling (this is needed since you do not have have statistics for your domain setup for this forecast model version and physics options, so that you cannot run data-assimilation (unless you use statistics from old system possibly derived from a slighthly different domain and with a different model version, which is not recommended). In step 2 you then use the statistics derived in step 1 to generate the final background error statistics files by applying ensemble data assimilation within the HARMONIE-AROME modelling system.","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"In step 1 structure functions are generated from difference fields from ensemble members of HARMONIE-AROME forecast. These are obtained from downscaling of ECMWF EDA ensemble forecast. To alleviate spin-up issues, these phase 1 downscaled HARMONIE-AROME forecasts are run up to 6 hours, and differences are generated from these. Using the ECMWF LBC data, 6h HARMONIE ensemble forecasts are initiated from ECMWF 6h forecasts daily from 00 UTC and 12 UTC, with ECMWF forecasts as initial and lateral boundary conditions. To obtain stable statistics, it is recomended to run 4 ensembles for two chosen one-month episode (s). The episodes should sample different seasons. Therefore it is recommended to run for one winter month and one summer month, for example June 2016 and January 2017. These periods are chosen so as to benefit from the latest upgrade to ECMWF's EDA system. Thereby we sample both seasonal (January, July) and daily (00 UTC and 12 UTC) variations. After running of the ensembles the archived results (6h forecasts) are processed to generate structure functions by running a program called 'festat'. Festat will be run automatically within the SMS system when DTGEND is approached by an experiment and the statistics will be based on difference files generated by intermediate program femars and stored on ecfs in ec:/$uid/harmonie/$exp/femars (software to generate binary GRIB files of forecasts differences after each cycle). This will mean that if you start by running a one month experiment for January the structure functions generated when you reach DTGEND will be for January. When you use the same experiment name and launch also an experiment for July you will when you reach DTGEND have background error statistics based on both January and July differences files (since both of those are now found in ec:/$uid/harmonie/$exp/femars). These combined winter/summer background error statistics files from phase one are final product from step 1 and can are the intermediate background error statistics files to plug into the HARMONIE-AROME data assimilation of step 2. It should be mentioned that there is a possibility for the more advanced user to run festat off-line and with any combinations of January-July forecast difference files from ec:/$uid/harmonie/$exp/femars. That will be described in ore detail further below and is something you might want to do with forecasts difference files generated from step 2 to produce monthly background error statistics files by combining in different ways.","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"In step 2 we run again two one-month ensemble experiments for the same Januar and July months again utilizing ECMWF EDA forecasts as lateral boundary conditions. Again you use 4 ensemble members. The important difference as compared to step 1 is that you now carry out ensemble-data assimilation also within the HARMONIE-AROME framework. You use the background error statistics from phase 1 and do the eda within a data assimilation cycle. This has the important advantage that you significantly reduce spinup caused by the HARMONIE-AROME model adjustments to ECMWF EDA starting initial states. Because of this we can in step 2 derive the statistics from +3h forecast difference (rather than +6 that is used in step 1). ","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Note that there are methods to circumvent step1 and to technically run 3/4DVAR using structure functions derived from another HARMONIE model domain. Such existing methods include aspects such as horizontal truncation or extrapolation of horizontal spectra and possibly vertical interpolation in between vertical level geometries. Since the recommended procedure is to use the two stp approach described above these alternative methods are not described in detail. Furthermore it should be noted that there are background error covariance related tuning coefficients REDNMC and REDZONE. Settings of values of these ae not covered here. If you have a new domain you will use the default value 0.6 for REDNMC and 100 for REDZONE which are considered apropiate values for the derivation of structure functions. If you re-derive your statistics for an existing domain you will use the REDNMC and REDZONE values as assigned in scr/include.ass. ","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"There are various existing tools for investigating your newly derived structure functions and at the end of this page there are some documentation of existing tools and how to use them. ","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"The procedure for generating structure functions from an ensemble of forecasts is described below for a AROME setup with 2.5 km horizontal resolution and 65 vertical levels. The experiment is run for a one mont winter-period of followed by a one month summer-period on the ECMWF computing system. Forecast differences are derived twice a day (00 forecasts from 12 UTC) from combinations of the four ensemble members. Besides the scientific recommendation to cover many different weather situations there is as well a matemathical constraint that the number of forecast difference files provided to festat needs to be larger than the number of vertical levels used in the forecast model integration. In the section below detailed instructions on how to generate the structure functions are given. The other sections deals with how to diagnose the structure functions recent and ongoing work and future development plans.","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"It is recommended for future coming enhancements regarding handling of B statistics and diagnostics of it to save all generated forecast difference files as well as stabal.cv, stabal.cvt and stabal.bal and generated .xy and .y files (.cvt .xy and .y for diagnotical puroposes):","category":"page"},{"location":"DataAssimilation/StructureFunctions/#Generating-background-error-statistics-(using-43h2.2)","page":"Structure functions","title":"Generating background error statistics (using 43h2.2)","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"The following instructions are valid for trunk and any 43h2.2 tags that have been created. These instructions will only work at ECMWF. If you do have a new domain (or are not sure) you should follow that route in step 1 below. New domain creation is described in ModelDomain which links to the useful Domain Creation Tool ","category":"page"},{"location":"DataAssimilation/StructureFunctions/#STEP-1-Downscaling","page":"Structure functions","title":"STEP 1 Downscaling","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Create a new experiment on ECMWF:\nIn case you do have an existing domain setup do:\nmkdir -p $HOME/hm_home/jbdownexp\ncd $HOME/hm_home/jbdownexp\n~hlam/Harmonie setup -c JBDSC -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1 -d DOMAIN # where domain is the name of your domain\nIn case you are creating structure functions for a new domain (or you are not sure):\nmkdir -p $HOME/hm_home/jbdownexp\ncd $HOME/hm_home/jbdownexp\n~hlam/Harmonie setup -c JBDSC -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1\n~hlam/Harmonie co scr/Harmonie_domains.pm\nThen edit scr/Harmonie_domains.pm and add your new domain definition.\nThe ensemble that will be used to generate the structure functions needs to be defined in suites/harmonie.pm. An edited ensemble configuration file should define a four member ensemble that only varies the boundary memeber input (ENSBDMBR) as follows:\n%env = (\n# 'ANAATMO' => { 0 => '3DVAR' },\n# 'HWRITUPTIMES' => { 0 => '00-21:3,24-60:6' },\n# 'SWRITUPTIMES' => { 0 => '00-06:3' },\n# 'HH_LIST' => { 0 => '00-21:3' },\n# 'LL_LIST' => { 0 => '36,3' },\n# 'LSMIXBC' => { 0 => 'no' },\n# 'ANASURF' => { 0 => 'CANARI_OI_MAIN' },\n 'ENSCTL' => [ '001', '002', '003', '004'],\n# 'OBSMONITOR' => [ 'obstat'],\n# SLAFLAG: Forecast length to pick your perturbation end point from\n# SLAFDIFF: Hours difference to pick your perturbation start point from\n# SLAFLAG=24, SLAFDIFF=6 will use +24 - +18\n# SLAFDIFF=SLAFLAG will retain the original SLAF construction\n# SLAFK should be tuned so that all members have the same perturbation size\n 'ENSBDMBR' => [ 1,2,3,4],\n# 'SLAFLAG' => [ 0, 6, 6, 12, 12, 18, 18, 24, 24, 30, 30],\n# 'SLAFDIFF' => [ 0, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6],\n# 'SLAFK' => ['0.0','1.75','-1.75','1.5','-1.5','1.2','-1.2','1.0','-1.0','0.9','-0.9'],\n# When using ECMWF ENS the members should be defined\n# # 'ENSBDMBR' => [ 0, 1..10],\n\n### Normally NO NEED to change the settings below\nRun for two one-month (30 day) periods:\ncd $HOME/hm_home/jbdownexp\n~hlam/Harmonie start DTG=2016060100 DTGEND=2016070100\n#\n#~hlam/Harmonie start DTG=2017010100 DTGEND=2017013100\nGenerate the statistics using festat standalone:\nPlace yourself at $TEMP on ECMWF\nCopy Festat.standalone to $TEMP on ECMWF\nEdit the script to reflect your user and experiment details (in particular copy femars data ec:/$uid/harmonie /jbdownexp/femars/ to your femars-directory on $TEMP)\nsubmit with\nqsub ./Festat.standalone\nyou will get a log-file festat.log on $TEMP and results in directory festat_wrk. when the program has finished do:\ncd festat_wrk\nemkdir ec:/$uid/jbdata\ngzip stab_your_exp.cv\ngzip stab_your_exp.bal\necp stab_your_exp.cv.gz ec:/$uid/jbdata/. (with your own filename and directory)\necp stab_your_exp.bal.gz ec:/$uid/jbdata/. (with your own filename and directory)\n(also create a tar.file with all *.xy *.y *.cv, *.bal and *.cvt and put on ecfs for future diagnostical purposes) ","category":"page"},{"location":"DataAssimilation/StructureFunctions/#STEP-2-Generating-background-error-statistics-with-EDA-cycling-(instructions-under-testing)","page":"Structure functions","title":"STEP 2 Generating background error statistics with EDA cycling (instructions under testing)","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Create a new experiment on ECMWF:\nIn case you do have an existing domain setup do:\nmkdir -p $HOME/hm_home/jbedaexp\ncd $HOME/hm_home/jbedaexp\n~hlam/Harmonie setup -c AROME_JBEDA -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1 -d DOMAIN # where domain is the name of your domain\nIn case you are creating structure functions for a new domain (or you are not sure):\nmkdir -p $HOME/hm_home/jbedanexp\ncd $HOME/hm_home/jbedaexp\n~hlam/Harmonie setup -c AROME_JBEDA -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1\n~hlam/Harmonie co scr/Harmonie_domains.pm\nThen edit scr/Harmonie_domains.pm and add your new domain definition.\nThe ensemble that will be used to generate the structure functions needs to be defined in suites/harmonie.pm. An edited ensemble configuration file should define a four member ensemble that only varies the boundary memeber input (ENSBDMBR) as follows:\n%env = (\n# 'ANAATMO' => { 0 => '3DVAR' },\n# 'HWRITUPTIMES' => { 0 => '00-21:3,24-60:6' },\n# 'SWRITUPTIMES' => { 0 => '00-06:3' },\n# 'HH_LIST' => { 0 => '00-21:3' },\n# 'LL_LIST' => { 0 => '36,3' },\n# 'LSMIXBC' => { 0 => 'no' },\n# 'ANASURF' => { 0 => 'CANARI_OI_MAIN' },\n 'ENSCTL' => [ '001', '002', '003', '004'],\n# 'OBSMONITOR' => [ 'obstat'], \n# SLAFLAG: Forecast length to pick your perturbation end point from\n# SLAFDIFF: Hours difference to pick your perturbation start point from\n# SLAFLAG=24, SLAFDIFF=6 will use +24 - +18\n# SLAFDIFF=SLAFLAG will retain the original SLAF construction\n# SLAFK should be tuned so that all members have the same perturbation size\n 'ENSBDMBR' => [ 1,2,3,4],\n# 'SLAFLAG' => [ 0, 6, 6, 12, 12, 18, 18, 24, 24, 30, 30],\n# 'SLAFDIFF' => [ 0, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6],\n# 'SLAFK' => ['0.0','1.75','-1.75','1.5','-1.5','1.2','-1.2','1.0','-1.0','0.9','-0.9'],\n# When using ECMWF ENS the members should be defined\n# # 'ENSBDMBR' => [ 0, 1..10],\n\n### Normally NO NEED to change the settings below\nLink to your newly generated Jb statistics from STEP1 :\nEdit in $HOME/hm_home/jbedaexp/scr/include.ass as follows (example for DOMAIN=METCOOP25D): In the section for your relevant domain point to the structure function stored in STEP one as follows:\n elif [ \"$DOMAIN\" = YOUR DOMAIN]; then\n JBDIR=${JBDIR-\"ec:/hirlam/harmonie_jbdata\"}\n JBDIR=ec:/$uid/jbdata\n f_JBCV=stabfiltn_your_exp.cv_jbconv.cv (without .gz)\n f_JBBAL=stabfiltn_your_exp.bal_jbconv.bal (without.gz)\nRun for two one-month (30 day) periods:\ncd $HOME/hm_home/jbedaexp\n~hlam/Harmonie start DTG=2016060100 DTGEND=2016070100\n#\n#~hlam/Harmonie start DTG=2017010100 DTGEND=2017013100\nGenerate the statistics using festat standalone: \nPlace yourself at $TEMP on ECMWF\nCopy Festat.standalone to $TEMP at ECMWF\nEdit the script to reflect your user and experiment details (in particular copy femars data ec:/$uid/harmonie/jbdownexp/femars/ to femars-directory on $TEMP)\nMake sure you have removed old femars_wrk directory and only have forecast differences from you EDA experiment in your femars directory As well preferably name files differently than in STEP 1 downscaling. ","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":" submit with \n\n ```bash\n qsub ./Festat.standalone\n ```\n \n you will get a log-file `festat.log` on `$TEMP` and results in directory `festat_wrk`\n when the program has finished do:\n \n ```bash\n cd festat_wrk\n emkdir ec:/smx/jbdata (with smx replaced with your own user id) \n gzip stab_your_eda_exp.cv\n gzip stab_your_eda_exp.bal\n ecp stab_your_eda_exp.cv.gz ec:/smx/jbdata/. (with your own filename and directory)\n ecp stab_your_eda_exp.bal.gz ec:/smx/jbdata/. (with your own filename and directory)\n ```\n\n also create a tar-file with all `*.xy`, `*.y`, `*.cv`, `*.bal` and `*.cvt` and put on ecfs for future diagnostical purposes) These new files are you final background error statistics to be diagnosed (compared with STEP 1 ones perhaps) and inserted to your data assimilation by modyfying `include.ass` (as in bullet 3 above) to point to your new files.","category":"page"},{"location":"DataAssimilation/StructureFunctions/#Diagnosis-of-background-error-statistics","page":"Structure functions","title":"Diagnosis of background error statistics","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Diagnosis of background error statistics is a rather complicated task. To get an idea of what the correlations and covariances should look like take a look in the article: Berre, L., 2000: Estimation of synoptic and meso scale forecast error covariances in a limited area model. Mon. Wea. Rev., 128, 644-667. Software for investigating and graphically illustrate different aspects of the background error statistics has been developed and statistics generated for different domains has been investigated using the AccordDaTools package. With this software you can also compare your newly generated background error statistics with the one generated for other HARMONIE domains. This will give you and idea if your statistics seems reasonable. For diagnosing the newly derived background error statistics follow these instructions:\nGet the code and scripts:\nDownload and install AccordDaTools following instructions in the README\nDon't forget to add the package tools directory to your PATH: \nexport PATH=/path/to/da_tools:$PATH\nRun Jb diagnostics script:\nFor example for a new domain using horizontal grid-spacing of 2500 m and (Harmonie) 65 vertical levels:\njbdiagnose -b jb_data/stab_IRELAND25_064_480.bal -c jb_data/stab_IRELAND25_064_480.cv -g 2500 -l harmL65 -e jbdiag_IRELAND25_064\nThe output will be made written to jbdiag_IRELAND25_064","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"The AccordDaTools package also provides two tools for plotting the data produced by jbdiagnose, plotjbbal and plotjbdiag. plotjbbal plots Jb balances for different parameters. plotjbdiag produces spectral density (spdens) and vertical correlation (vercor) diagnostic plots for your structure funtions. For example:\nplotjbbal:\nplotjbbal -t stdv -p QQ -r jbdiag_ -e IRELAND25_064\nplotjbdiag:\nplotjbdiag -l 50 -t vercor -p QQ -r jbdiag_ -e IRELAND25_064","category":"page"},{"location":"DataAssimilation/StructureFunctions/#Run-3DVAR/4DVAR-with-the-new-background-error-statistics","page":"Structure functions","title":"Run 3DVAR/4DVAR with the new background error statistics","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"create hm_home/jb_da. Then cd $HOME/hm_home/jb_da.\ncreate experiment by typing\n~hlam/Harmonie setup -r ~hlam/harmonie_release/git/tags/harmonie-43h2.2.1\nIn scr/include.ass set JBDIR=ec:/$uid/jbdata (uid being your userid, in this example 'ec:/smx/jbdata') and f_JBCV is name of your .cv file in ec:/$uid/jbdata (without .gz) and f_JBBAL is 'name of your .bal file in ec:/$uid/jbdata (without .gz) (in this example, f_JBCV=stab_METCOOPD_65_20200601_360.cv, stab_METCOOPD_65_20200601_360.bal). Add these three lines instead of the three lines in include.ass that follows right after the elif statement: elif [ \"$DOMAIN\" = METCOOP25D]; then. If domain is other than METCOOP25D one has to look for the alternative name of the domain. \nFrom $HOME/hm_home/jb_da launch experiment by typing\n~hlam/Harmonie start DTG=2021010100 DTGEND=2021010103\nThe resulting analysis file be found under $TEMP/hm_home/jb_da/archive/2021/01/01/03 and it will be called MXMIN1999+0000 and on and ec:/$uid/harmonie/2021/01/01/03. To diagnose the 3D-VAR analysis increments of the jb_da-experiment, copy the files MXMIN1999+0000 (analysis) and ICMSHHARM+0003 (fg) to $SCRATCH. The first guess (background) file can be found on $TEMP/hm_home/jb_da/archive/2021/01/01/00 and ec:/$uid/harmonie/jb_da/2021/01/01/00. Convert from FA-file format to GRIB with the gl-software ($SCRATCH/hm_home/jb_da/bin/gl) by typing ./gl -p MXMIN1999+0000 and ./gl -p ICMSHANAL+0000. Then plot the difference between files file with your favorite software. Plot horizontal and vertical cross-sections of temperature and other variables using your favourite software (epygram for example).\nNow you have managed to insert the newly generated background error statistics to the assimilation system and managed to carry out a full scale data assimilation system and plot the analysis increments. The next natural step to further diagnose the background error statistics is to carry out a single observation impact experiment, utilizing your newly generated background error statistics. Note the variables REDNMC and REDZONE in include.ass. REDNMC is the scaling factor for the background error statistics (default value 0.6/0.9) for METCOOP25D/NEW_DOMAIN). REDZONE described how far from the lateral boundaries (in km) the observations need to be located to be assimilated (default value 150/100) for METCOOP25D/NEW_DOMAIN.","category":"page"},{"location":"DataAssimilation/StructureFunctions/#In-line-Interpolation-and-Extrapolation-of-Jb-statistics","page":"Structure functions","title":"In-line Interpolation and Extrapolation of Jb-statistics","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"In case you do not have existing background error statistics derived for your domain there is a built technical possibility to use Jb-files from another domain derived with the same number of vertical levels. From this host Jb-files background error statistics are then interpolated or extrapolated to the current domain configuration. The assumption is then (which is in general questionable) that the statistics derived derived on the host domain is as well valid for the current domain. If the longest side of the host domain is shorter than the longest side of the current domain an extrapolation of background error covariance spectra is needed. Such extrapolation should be avoided over a wide range of wavenumbers. Therefore it is recommended that the longest side of the host Jb-file is as long or longer than the longest side of the current domain.The interpolation is invoked by in ecf/config_exp.h set JB_INTERPOL=yeś and JB_REF_DOMAIN=$HOST_JB, where $HOST_JB is for example METCOOP25B. These settings will activate runnning of script jbconv.sh (in case no Jb files present for current domain), called from Fetch_assim_data. ","category":"page"},{"location":"DataAssimilation/StructureFunctions/#On-going-work-and-future-developments","page":"Structure functions","title":"On-going work & future developments","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Recent and on-going work as well as plans for future developments:","category":"page"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"Ongoing-work regarding structure functions concerns investigations of effects on B statistics and data assimilation of the upper-level relaxation towards ecmwf at upper boundary condition through LUNBC=.true. Longer term research is towards flow dependent background error statistics and close link between the data assimilation and the ensemble forecasting system. Plans for future work also include adopting towards use of cy46 Festat.standalone, reading FA-files rather than femars-files. Here is a newly developed stand-alone tool for interpolation in of Jb-statistics as well between different vertical levels (not recommended) not yet publicly available and documented. Finally it should be mentioned that there are alternative methods to EDA for carrying out STEP 2 of teh background error statistics derivation. Such alternatives are BRAND and BREND and these have been tested and compared with EDA in various contexts, such as in reanalysis frameworks. The conclusion is that there are both pros and cons with BRAND as compared with EDA. The main conclusion is that both EDAand BRAND are hampered by the homogeneity and isotrophy assumptions in 3DVAR/4DVAR framework, so that differences are smaller than in hybrid DA frameworks. Therefore continued EDA/BRAND comparisons are carried out withing hybrid ensemble/da frameworks. Nevertherless we aim here to include as well instructions for optionally replacing STEP 2 EDA in procedure above with STEP 2 BRAND. As well we aim for introducing instructions for using extended complementary diagnosis tools for Jb statistics using fediacov tool and associated plotting scripts. Such tools do exist, but not yet publicly available and documented ","category":"page"},{"location":"DataAssimilation/StructureFunctions/#References","page":"Structure functions","title":"References","text":"","category":"section"},{"location":"DataAssimilation/StructureFunctions/","page":"Structure functions","title":"Structure functions","text":"festat_guidelines, Ryad El Katib, Meteo France, 2014\nfestatforfa_guidelines, Ryad El Katib, Meteo France, 2016","category":"page"},{"location":"PostProcessing/gl/#gl","page":"GL","title":"Post processing with gl","text":"","category":"section"},{"location":"PostProcessing/gl/#Introduction","page":"GL","title":"Introduction","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl ( as in griblist ) is a multi purpose tool for file manipulation and conversion. It uses ECMWF's ecCodes library, and can be compiled with and without support for HARMONIE FA/LFI or NETCDF files. The gl package also includes software for extraction for verification, fldextr, and field comparison, xtool.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" USAGE: gl file [-n namelist_file] [-o output_file] -[lfgmicp(nc)sdtq] [-lbc CONF]\n\n gl [-f] file, list the content of a file, -f for FA/lfi files \n -c : Convert a FA/lfi file to grib ( -f implicit ) \n -p : Convert a FA file to grib output without extension zone\n (-c and -f implicit ) \n -nc : Convert a FA/lfi file to NetCDF ( -f implicit ) \n -musc : Convert a MUSC FA file ASCII ( -c implicit ) \n -lbc ARG : Convert a CONF file to HARMONIE input \n where CONF is ifs or hir as in ECMWF/HIRLAM data \n climate_aladin assumed available \n -d : Together with -lbc it gives a (bogus) NH boundary file \n climate_aladin assumed available \n -s : Work as silent as possible \n -g : Prints ksec/cadre/lfi info \n -m : Prints min,mean,max of the fields \n -i : Prints the namelist options (useless) \n -tp : Prints the GRIB parameter usage \n -t : Prints the FA/lfi/GRIB table (useful) \n -wa : Prints the atmosphere FA/NETCDF/GRIB table in wiki fmt \n -ws : Prints the surfex FA/NETCDF/GRIB table in wiki fmt \n -q : Cross check the FA/lfi/GRIB table (try) \n -pl X : Give polster_projlat in degrees \n\n gl file -n namelist_file : interpolates file according to \n namelist_file \n gl -n namelist_file : creates an empty domain according to \n specifications in namelist_file \n -igd : Set lignore_duplicates=T \n -igs : Set lignore_shortname=T. Use indicatorOfParameter \n instead of shortName for selection \n","category":"page"},{"location":"PostProcessing/gl/#ecCodes-definition-tables","page":"GL","title":"ecCodes definition tables","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Since ecCodes has replaced grib_api as the ECMWF primary software package to handle GRIB, we will hereafter only refer to ecCodes but same similar settings applies for grib_api as well. With the change to ecCodes we heavily rely on the shortName key for identification. To get the correct connection between the shortnames and the GRIB1/GRIB2 identifiers we have defined specific tables for harmonie. These tables can be found in /util/gl/definitions. To use these tables you have to define the ECCODES_DEFINITION_PATH environment variable as ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"export ECCODES_DEFINITION_PATH=SOME_PATH/gl/definitions:PATH_TO_YOUR_ECCODES_INSTALLATION","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If this is not set correctly the interpretation of the fields may be wrong.","category":"page"},{"location":"PostProcessing/gl/#GRIB/FA/LFI-file-listing","page":"GL","title":"GRIB/FA/LFI file listing","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Listing of GRIB/ASIMOF/FA/LFI files.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" gl [-l] [-f] [-m] [-g] FILE","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where FILE is in GRIB/ASIMOF/FA/LFI format","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Option Description\n-l input format is LFI\n-f input format is FA\n -l and -f are equivalent\n-g print GRIB/FA/LFI header\n-m print min/mean/max values","category":"page"},{"location":"PostProcessing/gl/#GRIB/FA/LFI-file-conversion","page":"GL","title":"GRIB/FA/LFI file conversion","text":"","category":"section"},{"location":"PostProcessing/gl/#Output-to-GRIB1","page":"GL","title":"Output to GRIB1","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl [-c] [-p] FILE [ -o OUTPUT_FILE] [ -n NAMELIST_FILE]","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" \n-c converts the full field (including extension zone) from FA to GRIB1\n-p converts field excluding the extension zone (\"p\" as in physical domain) from FA to GRIB1","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The FA/LFI to GRIB mapping is done in a table defined by a util/gl/inc/trans_tab.h","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To view the table:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl -t\ngl -tp","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To check for duplicates in the table:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl -q","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The translation from FA/LFI to GRIB1 can be changed through a namelist like this one:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n user_trans%full_name ='CLSTEMPERATURE',\n user_trans%t2v = 253,\n user_trans%pid = 123,\n user_trans%levtype = 'heigthAboveGround',\n user_trans%level = 002,\n user_trans%tri = 000,\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"or for the case where the level number is included in the FA name","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n user_trans%full_name='SNNNEZDIAG01',\n user_trans%cpar='S'\n user_trans%ctyp='EZDIAG01',\n ...\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Conversion can be refined to convert a selection of fields. Below is and example that will write out ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"T (shortname='t',pid=011), u (shortname='u',pid=033) andv (shortname='v',pid=034) on all (level=-1) model levels (levtype='hybrid')\nT (shortname='t',pid=011) at 2m (lll=2) above the ground (levtype='heightAboveGround') [T2m]\nTotal precipitation (shortname='tp',pid=061,levtype='heightAboveGround',level=000)","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n readkey%shortname= 't', 'u', 'v', 't', 'tp', 'fg',\n readkey%levtype='hybrid','hybrid','hybrid','heightAboveGround','heightAboveGround','heightAboveGround',\n readkey%level= -1, -1, -1, 2, 0, 10,\n readkey%tri = 0, 0, 0, 0, 4, 2,\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"shortname is the ecCodes shortname of the parameter \nlevtype is the ecCodes level type\nlevel is the GRIB level\ntri means timeRangeIndicator and is set to distinguish between instantaneous, accumulated and min/max values.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The first three ones are well known to most users. The time range indicator is used in HARMONIE to distinguish between instantaneous and accumulated fields. Read more about the options here Note that for levtype hybrid setting level=-1 means all. ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"We can also pick variables using their FA/lfi name:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n readkey%faname = 'SPECSURFGEOP','SNNNTEMPERATURE',\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Where SNNNTEMPERATURE means that we picks all levels.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Fields can be excluded from the conversion by name","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n exclkey%faname = 'SNNNTEMPERATURE'\n /","category":"page"},{"location":"PostProcessing/gl/#Output-to-GRIB2","page":"GL","title":"Output to GRIB2","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To get GRIB2 files the format has to be set in the namelist as ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n output_format = 'GRIB2'\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The conversion from FA to GRIB2 is done in gl via the ecCodes tables. All translations are defined in util/gl/scr/harmonie_grib1_2_grib2.pm where we find all settings required to specify a parameter in GRIB1 and GRIB2.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"\n tmax => {\n editionNumber=> '2',\n comment=> 'Maximum temperature',\n discipline=> '0',\n indicatorOfParameter=> '15',\n paramId=> '253015',\n parameterCategory=> '0',\n parameterNumber=> '0',\n shortName=> 'tmax',\n table2Version=> '253',\n typeOfStatisticalProcessing=> '2',\n units=> 'K',\n },\n","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To create ecCodes tables from this file run","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" cd gl/scr\n ./gen_tables.pl harmonie_grib1_2_grib2","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"and copy the grib1/grib2 directories to gl/definitions.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Note that there are no GRIB2 transations yet defined for the SURFEX fields!","category":"page"},{"location":"PostProcessing/gl/#Output-to-NetCDF","page":"GL","title":"Output to NetCDF","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl -nc [-p] FILE [ -o OUTPUT_FILE] [ -n NAMELIST_FILE]","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" \n-p converts field excluding the extension zone (\"p\" as in physical domain) from FA to NetCDF\n-o output file name\n-n namelist file to be used in conversion","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The FA/LFI to NetCDF mapping is done using tables defined by util/gl/inc/trans_tab.h and util/gl/inc/nc_tab.h","category":"page"},{"location":"PostProcessing/gl/#Namelist-options-for-NetCDF","page":"GL","title":"Namelist options for NetCDF","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The translation from FA/LFI to NetCDF can be changed through a namelist like this one:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" &naminterp\n user_nctrans%full_name ='SFX.SIC',\n user_nctrans%s_name = \"\" \n user_nctrans%l_name = \"Sea-Ice Area Percentage (Atmospheric Grid)\",\n user_nctrans%unit = \"%\" ,\n /","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The unit entry can be used to do a limited set of unit conversions, in the example above SIC will be converted from the original units (fraction) to a percentage.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Other specific naminterp options for converting to netcdf:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"variable description default\nlacc2flux T: Convert accumulated fields (tri=4) to fluxes by dividing by the length of the interval FF-F0. Names, units and tri are adapted. .FALSE.\nlmergelevs T: write all levels of a variable to the same file; F: each level in a separate file .FALSE.\nlclimate_fields T: don't add a time dimension and variable, useful for climate fields like land mask .FALSE.\nlvertices T: add vertices (corner points) to netcdf file, only possible for newly created files .FALSE.\nlhistory T: add history global attribute to netcdf file .FALSE.\nikindnc NetCDF version (3 4), 3: larger files, but faster; 4: compressed, but slow\nref_date Reference date, used to generate relative time axis 19500101\nref_hour Reference hour, used to generate relative time axis 0\nctimeis time refers to \"start\", \"middle\", or \"end\" of interval for non-instantaneous fields. If writing several variables to 1 file, that don't have the same timing (e.g. accumulated vs. instantaneous), then \"end\" is probably the only safe option! end\ncsep separator in derived netcdf file name _\ncdatefname format for date in derived netcdf file name, if not recognized as format, use whatever is passed YYYYMMDDHH\ncfiden used in derived netcdf file name to indicate origin (e.g. his, sfx, fp) \ncfreq used in derived netcdf file name and as \"frequency\" global attribute (e.g. 1hr, 3hr, day, mon) \nchm_rev HARMONIE version, used as \"model_id\" global attribute \ncdomain domain name, used in derived netcdf file name and as \"domain\" global attribute \ncexperiment experiment id, used in derived netcdf file name and as \"experiment_id\" global attribute \ncinstitute used as \"institute_id\" global attribute \nchostmod used as \"drivingmodelid\" global attribute ","category":"page"},{"location":"PostProcessing/gl/#Setting-fstart-for-min-max-fields","page":"GL","title":"Setting fstart for min-max fields","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Min and max fields, with tri=2 (time range indicator) are valid for a certain period. By default the period is 3h, but this can be changed via variables FREQ_RESET_TEMP and FREQ_RESET_GUST in ecf/config_exp.h, for example to 1 to store min/max temperature over an hour. By default gl doesn’t have info on this frequency and it is assumed they are valid since the start of the run. Use the namelist option fstart to assign the appropriate starting value, e.g.:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"fstart(15) = 3","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"for max t2m (parameter code 15). The fstart value is then used in the time_bnds. This value needs to be updated with FREQ_RESET. In Makegrib_gribex and convertFA there are examples of how to do this. Note that this works in the same way for NetCDF and GRIB.","category":"page"},{"location":"PostProcessing/gl/#Derived-file-name","page":"GL","title":"Derived file name","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If no output file name is supplied (-o flag) an output file name is derived from available info:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"nc_fld_name[_levinfo][_cfiden][_cdomain][_cexperiment][_cfreq][_timeinfo].nc","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"with: | | | | –- | –- | | ncfldname | name of netcdf variable as defined in nctab.h | | levinfo | indication of level info, with *lev if all levels are written to the same file (lsplitlev), or a level number/height otherwise | | cfiden | identifier of input file (e.g. his, sfx), set via namelist | | cdomain | domain name, set via namelist | | cexperiment | experiment name, set via namelist | | cfreq | frequency, set via namelist | | timeinfo | indicator of file date/time, format controlled via cdatefname namelist variable, not used if lclimatefields |","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If elements are not set, either via the namelist or by a default value, they are excluded from the name. The separator is a _ by default but can be changed via the csep namelist variable. ","category":"page"},{"location":"PostProcessing/gl/#Time-axis","page":"GL","title":"Time axis","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"A relative time axis (days since …) is created using the refdate and refhour as reference. In existing files the current time step is looked up, and if it already exists it is overwritten. If it doesn’t exist yet, it is appended to the end of the file. Note that if time steps are not converted in order the time axis will not be consecutive. For non-instantaneous fields a time bounds variable is added. The start of the interval is taken from fstart (from tri=2) or outkey%F0, or just from the input file (usually 0). The end of the interval is the current time step. Whether the time variables refers to the beginning, middle or end of the interval can be controlled with the ctimeis namelist variable. If instantaneous and non-instantaneous files are written to the same file, it is best to use ctimeis=end. Start may also work, but this should be tested first. With the namelist variable cdatefname you can write output from multiple cycles to the same file. For example by setting it to YYYYMM the derived file name will contain year and month info, but not day and hour, so all cycles from a month are written to the same file. Be careful with the first time step of a cycle when using cdatefname as gl will overwrite the last time step of the previous cycle with those of the first step of the new cycle. You can decide to skip the first time step, or multiple steps, if cycles overlap more than 1 step. ","category":"page"},{"location":"PostProcessing/gl/#Multilevel-fields-and-fields-on-heights-or-pressure-levels","page":"GL","title":"Multilevel fields and fields on heights or pressure levels","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"All levels of multilevel fields can be written to one file (lmergelevs=.TRUE.) or to separate files (default). This is possible for model levels, pressure levels and height levels.","category":"page"},{"location":"PostProcessing/gl/#All-levels-in-one-file","page":"GL","title":"All levels in one file","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If all levels are written to the same file and additional dimension is needed: lev for model levels, height for height levels. For model level fields, named SNNN, the number of levels is derived from the input file (glistnlev). For height level fields, HNNNNN, currently the heights must be set via the hlevlist namelist variable. The heights in this list are used to expand the HNNNNN (to H00010, H00250 etc) and are also used as coordinate variable. For pressure levels PNNNNN is used in the same way.","category":"page"},{"location":"PostProcessing/gl/#Single-level-fields-on-height","page":"GL","title":"Single level fields on height","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"For single level fields on a specific height such as 2m temperature and 10m wind a height variable is added with that height. This is done if level type = 105 and level ≠ 0. This may not be appropriate in all cases. Note that for some fields level is abused (e.g. level 760 for the sea tile), which gives useless height. The same approach is used when outputting multilevel fields with lsplitlev=.TRUE. (default).","category":"page"},{"location":"PostProcessing/gl/#Don’t-mix-fields","page":"GL","title":"Don’t mix fields","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"There is a check that all fields on height levels in one file have the same height specification, because only 1 height variable can be specified at the moment. So t2m and w10m cannot be in the same file. Not sure if the check is foolproof. It may be possible to define multiple heights in the code, e.g. height, height2 etc., but this has not been implemented yet. ","category":"page"},{"location":"PostProcessing/gl/#NetCDF-3-or-NetCDF-4","page":"GL","title":"NetCDF 3 or NetCDF 4","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"With the ikindnc namelist options the netcdf format can be set. NetCDF 4 files are compressed in gl, however, this makes the conversion much slower. At the moment it seems better to let gl use the NetCDF 3 format and then convert them to NetCDF 4 after creation of the file has finished. This can be done with the following command:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"nccopy -k 4 -d 1 -s $nc3_file $nc4_file","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":" \n-d deflate level\n-s shuffling (can improve compression, speed and size)","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"In scr/convertFA this can be done by setting nc3to4=yes (default). At the end of the script the files are then converted from netcdf3 to netcdf4-classic with compression.","category":"page"},{"location":"PostProcessing/gl/#Direction-of-fluxes","page":"GL","title":"Direction of fluxes","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"A new element positive was added to the nctrans derived type in moduletypez, and in nctab.h positive, can be empty, 'd' or 'u'. If it is not empty a positive attribute is added to the variable in the NetCDF file. If it has value 'u', the values of the variable are multiplied by −1 to change the direction from towards the surface to away from the surface.","category":"page"},{"location":"PostProcessing/gl/#Fill-value","page":"GL","title":"Fill value","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"By default no missing value is added for atmospheric fields. For SURFEX fields either 999 (version ≤ 4) or 1+e20 (version ≥ 5) is used. It is possible to add a missing value via the namelist. To do so, in the namelist set variable lcheck_misval to .TRUE. and set rmisval to the correct value.","category":"page"},{"location":"PostProcessing/gl/#Adding-new-netcdf-variables","page":"GL","title":"Adding new netcdf variables","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If you get messages like:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"No NETCDF conversion for ....","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"then you need to add the field to util/gl/inc/nc_tab.h, which contains the translation from FA to netcdf names. The file util/gl/inc/trans_tab.h contains the conversion to FA names to GRIB codes. If the field you would like to is absent there, it is probably best to add it in that file as well, as for example GRIB level types are used for functionality in the netcdf conversion as well. Remember to recompile.","category":"page"},{"location":"PostProcessing/gl/#postprocessing","page":"GL","title":"postprocessing","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl can be used to produce postprocessed parameters possibly not available directly from the model. ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Postprocessed parameters are defined in util/gl/grb/postprocess.f90 and util/gl/grb/postp_pressure_level.f90. Some more popular parameters are listed:\nPseudo satellite pictures\nTotal precipitation and snow\nWind (gust) speed and direction\nCloud base, cloud top, cloud mask and significant cloud top","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"For a comprehensive list please check the output information for each cycle. NOTE that all parameters may not be implemented in gl","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To produce \"postprocessed\" MSLP and accumulated total precipitation and visibility use the following namelist, nam_FApp:\n&naminterp\n pppkey(1:3)%shortname='pres','tp','vis',\n pppkey(1:3)%levtype='heightAboveSea','heightAboveGround','heightAboveGround'\n pppkey(1:3)%level= 0, 0, 0,\n pppkey(1:3)%tri= 0, 4, 0,\n lwrite_pponly= .TRUE.,\n/\ngl -p ICMSHHARM+0003 -o output_pp.grib -n nam_FApp\nNote:\nSet lwrite_pponly as true to only write the postprocessed fields to file\nSet lwrite_pponly as false write all fields will be written to the file, input fields as well as the postprocessed fields.","category":"page"},{"location":"PostProcessing/gl/#Vertical-interpolation","page":"GL","title":"Vertical interpolation","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl can be used to carry out vertical interpolation of parameters. Four types are available","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"HeightAboveSea, give height above sea in meters\nHeightAboveGround, give height above ground in meters\nHeightAboveGroundHighPrecision, give height above ground in centimeters\nisobaricInHpa, give height above sea in hPa\nTo interpolation temperature to 1.40m (level 140 in cm) use the following namelist, nam_hl:\n&naminterp\n pppkey(1:1)%shortname='t',\n pppkey(1:1)%levtype='heightAboveGroundHighPrecision',\n pppkey(1:1)%level= 140,\n pppkey(1:1)%tri= 0,\n vint_z_order=1,\n lwrite_pponly= .TRUE.,\n/\ngl -p ICMSHHARM+0003 -o output_hl.grib -n nam_hl\nNote:\nVertical interpolation to z levels is controlled by VINTZORDER: 0 is nearest level, 1 is linear interpolation\nTo height interpolation (Levls 500, 850 and 925 in hPa, type=100) use the following namelist, nam_pl:\n&naminterp\n pppkey(1:3)%shortname='t','t','t',\n pppkey(1:3)%levtype='isobaricInhPa','isobaricInhPa','isobaricInhPa',\n pppkey(1:3)%level= 500, 850, 925,\n pppkey(1:3)%tri= 0, 0, 0,\n vint_z_order=1,\n lwrite_pponly= .TRUE.,\n/\ngl -p ICMSHHARM+0003 -o output_pl.grib -n nam_pl","category":"page"},{"location":"PostProcessing/gl/#Horizontal-interpolation","page":"GL","title":"Horizontal interpolation","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Interpolation/resampling between different geometries such as regular lat lon, Lambert conformal, Polar steregraphic, rotated lat lon and rotated Mercator is possible with gl\nThe interpolation methods available are:\nnearest grid-point (order=-2)\nmost representative grid-point (order=-1)\nnearest grid-point (order=0)\nbi-linear (order=1)\nbi-quadratic (order=2, mask not respected)\nbi-cubic (order=3, mask not respected)\nExample of (an Irish) rotated lat lon domain, nam_FArotll:\n&naminterp\n outgeo%nlon=50,\n outgeo%nlat=50,\n outgeo%nlev=-1,\n outgeo%gridtype='rotated_ll',\n outgeo%west=-2.5,\n outgeo%south=-2.5,\n outgeo%dlon=0.1,\n outgeo%dlat=0.1,\n outgeo%polon=-6.7,\n outgeo%polat=-36.2,\n order= 1,\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"where DLON/DLAT are in degrees.The HIRLAM Domain Tool may be of use for viewing rotated lat lon domains.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl -p ICMSHHARM+0003 -n nam_FArotll -o output.grib","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Example of a lambert domain\n&naminterp\n outgeo%nlon = 50 ,\n outgeo%nlat = 50,\n outgeo%nlev = -1,\n outgeo%gridtype = 'lambert',\n outgeo%west = 15.0\n outgeo%south = 50.0\n outgeo%dlon = 10000.\n outgeo%dlat = 10000.\n outgeo%projlat = 60.\n outgeo%projlat2 = 60.\n outgeo%projlon = 15.\n/\nwhere DLON/DLAT are in meters.The HIRLAM Domain Tool may be of use for viewing rotated lat lon domains.\nExample polar stereographic projection\n&naminterp\n outgeo%nlon = 50 ,\n outgeo%nlat = 50,\n outgeo%nlev = -1,\n outgeo%gridtype = 'polar_stereographic',\n outgeo%west = 15.0\n outgeo%south = 50.0\n outgeo%dlon = 10000.\n outgeo%dlat = 10000.\n outgeo%projlat = 60.\n outgeo%projlon = 15.\n/\nwhere DLON/DLAT are in meters.Note: the GRIB1 standard assumes that the projection plane is at 60 degrees north whereas HARMONIE assumes it is at 90 degrees north.\nExample rotated Mercator\n&naminterp\n outgeo%nlon = 50 ,\n outgeo%nlat = 50,\n outgeo%nlev = -1,\n outgeo%projection = 11,\n outgeo%west = 15.0\n outgeo%south = 50.0\n outgeo%dlon = 10000.\n outgeo%dlat = 10000.\n outgeo%projlat = 60.\n outgeo%projlon = 15.\n/\nwhere DLON/DLAT are in metersNote: rotated Mercator is not supported in GRIB1.\nGeographical points is a special case of projection 0 use namelist file, nam_FAgp:\n&naminterp\n outgeo%nlon=3 ,\n outgeo%nlat=1,\n outgeo%nlev=-1,\n outgeo%gridtype='regular_ll',\n outgeo%arakawa= 'a',\n order = 0,\n readkey(1:3)%shortname='t','u','v',\n readkey(1:3)%levtype='heightAboveGround','heightAboveGround','heightAboveGround',\n readkey(1:3)%level= 2, 10, 10,\n readkey(1:3)%tri= 0, 0, 0,\n linterp_field = f,\n gplat = 57.375,57.35,57.60\n gplon = 13.55,13.55,14.63\n/\nThe result will be written to a ASCII file with the name gpYYYYMMDDHHLLL.\ngl -p ICMSHHARM+0003 -n nam_FAgp \ncat gp20140702_1200+003","category":"page"},{"location":"PostProcessing/gl/#Extract-(crop)-a-sub-domain","page":"GL","title":"Extract (crop) a sub-domain","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl can be used to \"cut out\" a sub-domain from an input file using the namelist namCUT:","category":"page"},{"location":"PostProcessing/gl/#Crop-using-lower-left-and-upper-right-coordinates","page":"GL","title":"Crop using lower left and upper right coordinates","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\nistart = 150\njstart = 150\nistop = 350\njstop = 350\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Use this command:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"gl input.grib -n namCut -o cutout.grib","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Another way of specifying your sub domain is to define how many points to exclude in the end","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\nistart = 150\njstart = 150\nistop = -10\njstop = -10\n/","category":"page"},{"location":"PostProcessing/gl/#Crop-using-SW,NE-corner-and/or-number-of-points","page":"GL","title":"Crop using SW,NE corner and/or number of points","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Here, you specify any of the SouthWest, NorthEast corners and/or the number of gridpoints","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\noutgeo%gridtype = 'crop',\noutgeo%nlat = 200,\noutgeo%nlon = 300,\noutgeo%south = 50.155,\noutgeo%west = -12.88,\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Or ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\noutgeo%gridtype = 'crop',\noutgeo%north = 58.277,\noutgeo%east = 12.3,\noutgeo%south = 50.155,\noutgeo%west = -12.88,\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If you specify outgeo%gridtype as 'crop', the SouthWest corner will be translated to lower left grid coordinates and Nlat,Nlon will translate to upper right coordinates. You may specify any of SW, NE, nlat/nlon. Priority is given to SW, NE. The behaviour is as follows:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"SW and NE have priority, these will anchor either corner. If a corner is not specified, Nlat/Nlon will extend from the other corner.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"If only one coordinate is specified, the other corner becomes the corner of the input domain. So: ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify only SW and you get a crop from there to the NE corner of the input domain.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify only NE and you get a crop from the SW corner of the input domain.\nSpecify SW and NE and you get a crop between these corners","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify SW and Nlat/Nlon and you get Nlat x Nlon from SW corner.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify NE and Nlat/Nlon and you get Nlat x Nlon south and west of NE corner.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify SW, NE and Nlat/Nlon and you get a crop between SW/NE corners. Nlat/Nlon are ignored.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Specify only Nlat/Nlon and you get Nlat x Nlon from SW corner of the input domain.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The crop must be within the original domain unless you set","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"ldemand_inside = .FALSE.","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"in the namelist. In this case, the crop will be adjusted to lie within the original domain and the output will be smaller than Nlat x Nlon. In the case where the requested crop lies entirely outside the original domain, the program will abort.","category":"page"},{"location":"PostProcessing/gl/#Rotating-wind-components","page":"GL","title":"Rotating wind components","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"HARMONIE produces u and v wind components relative to the model grid. gl by default always outputs u and v relative to the output grid. So if no regridding is done and the output is still on the LCC grid, u and v will also still be relative to the LCC grid. But if the output is regridded to a regular lat-lon grid, then u and v will be rotated and will be relative to the regular lat-lon grid. Wind (from) direction (parameter 31), however, is always relative to a regular lat-lon grid. To rotate u and v to regular lat-lon, while retaining the data on the LCC grid set uvrelativetogrid=0 in the namelist. All u and v vectors that will be processed will be rotated to geographical E and N directions. ","category":"page"},{"location":"PostProcessing/gl/#Output-to-several-files","page":"GL","title":"Output to several files","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"It is possible to let gl read data once and do processing loops with these data. Let us look at an example namelist","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\n OUTPUT_FORMAT='MEMORY'\n/\n&naminterp\n INPUT_FORMAT='MEMORY'\n OUTPUT_FORMAT='GRIB'\n OUTFILE='test1.grib'\n/\n&naminterp\n INPUT_FORMAT='MEMORY'\n OUTPUT_FORMAT='GRIB'\n OUTFILE='test2.grib'\n READKEY%FANAME='SNNNTEMPERATURE'\n/\n&naminterp\n INPUT_FORMAT='MEMORY'\n OUTPUT_FORMAT='GRIB'\n READKEY%FANAME='CLSTEMPERATURE'\n outgeo%nlon = 50 ,\n outgeo%nlat = 50,\n outgeo%nlev = -1,\n outgeo%gridtype = 'polar_stereographic',\n outgeo%west = 15.0\n outgeo%south = 50.0\n outgeo%dlon = 10000.\n outgeo%dlat = 10000.\n outgeo%projlat = 60.\n outgeo%projlon = 15.\n OUTFILE='test3.grib'\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"In the first loop we read data and store it in memory. In the second look we read the data from memory and output to the file test1.grib. Then we make two more loops where we in the first one only output a subset and in the last one also do an interpolation to a new grid. The data in memory is however still untouched.","category":"page"},{"location":"PostProcessing/gl/#Input-from-several-files","page":"GL","title":"Input from several files","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"It's also possible to read several files and write them into one. This is used to gather the various FA fields written from the IO-server. A typical namelist would look like","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"&naminterp\n maxfl=28,\n output_format='MEMORY',\n output_type = 'APPEND',\n input_format='FA',\n infile='forecast/io_serv.000001.d/ICMSHHARM+0003.gridall',\n/\n&naminterp\n output_format='MEMORY',\n output_type = 'APPEND',\n input_format='FA',\n infile='forecast/io_serv.000002.d/ICMSHHARM+0003.gridall',\n/\n...\n&naminterp\n input_format = 'MEMORY',\n output_format= 'GRIB'\n output_type = 'NEW',\n outfile = 'test.grib'\n/","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Where maxfl tells how many files that will be read.","category":"page"},{"location":"PostProcessing/gl/#domain_prop","page":"GL","title":"domain_prop","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop is used do extract various properties from a file. ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Climate: $MPPGL $BINDIR/domain_prop -DOMAIN_CHECK $LCLIMDIR/m$M1 -f || \\","category":"page"},{"location":"PostProcessing/gl/#Check-an-existing-domain-with-a-namelist-specification","page":"GL","title":"Check an existing domain with a namelist specification","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -DOMAIN_CHECK -f CLIMATE_FILE","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"The geometry is read from fort.10 and the program aborts if the new and old geometries differs. See scr/Climate for an example.","category":"page"},{"location":"PostProcessing/gl/#Check-if-Q-is-in-gridpoint-or-spectral-representation","page":"GL","title":"Check if Q is in gridpoint or spectral representation","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -QCHECK FAFILE","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"returns 1 if Q is spectral and 0 if Q is in gridpoint space.","category":"page"},{"location":"PostProcessing/gl/#Check-if-a-specific-field-is-present","page":"GL","title":"Check if a specific field is present","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -CHECK_FIELD S001CLOUD_FRACTI","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"returns 1 if S001CLOUD_FRACTI is found, 0 otherwise","category":"page"},{"location":"PostProcessing/gl/#Check-the-number-of-levels-in-a-file","page":"GL","title":"Check the number of levels in a file","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -NLEV FAFILE ","category":"page"},{"location":"PostProcessing/gl/#Check-the-geographical-extension-of-the-domain","page":"GL","title":"Check the geographical extension of the domain","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -MAX_EXT FAFILE ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"This is used in several places to determine the domain to be extracted from MARS or limit the observations sample. Another way is to provide the projection parameters of your domain as input","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -MAX_EXTR \\\n-NLON $NLON -NLAT $NLAT \\\n-LATC $LATC -LONC $LONC \\\n-LAT0 $LAT0 -LON0 $LON0 \\\n-GSIZE $GSIZE","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To get the geographical position of the lower left corner use","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -LOW_LEFT FAFILE ","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"To print out the important projection parameters in a file use:","category":"page"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -4JB FAFILE","category":"page"},{"location":"PostProcessing/gl/#Get-time-information-from-a-file","page":"GL","title":"Get time information from a file","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"domain_prop -f -DATE FAFILE","category":"page"},{"location":"PostProcessing/gl/#fldextr-and-obsextr","page":"GL","title":"fldextr and obsextr","text":"","category":"section"},{"location":"PostProcessing/gl/","page":"GL","title":"GL","text":"Read about the verification extraction programs here","category":"page"},{"location":"System/MFaccess/#Using-Météo-France-Servers","page":"MF Access","title":"Using Météo-France Servers","text":"","category":"section"},{"location":"System/MFaccess/#Introduction","page":"MF Access","title":"Introduction","text":"","category":"section"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"The procedure to get access to MF servers and their read-only git repository is outlined here","category":"page"},{"location":"System/MFaccess/#First-steps","page":"MF Access","title":"First steps","text":"","category":"section"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"Discuss your requirements for access to MF servers with the HIRLAM System project leader, Daniel Santos (dsantosm@aemet.es).\nDownload two forms \"Undertaking for the use of Météo-France computer resources\" and \"Demande d'authorisation de conexion au résau de Météo Franc\" from http://www.cnrm.meteo.fr/aladin/spip.php?article157. \nThe \"Undertaking for the use of Météo-France computer resources\" form is to be signed by you only\nThe \"Demande d'authorisation de conexion au résau de Météo France\" must be signed by you and your department head. It must also include an institute stamp. You should enter details in Contacts, Compte d'accesés aux machines du Centre de Cacul and at the bottom with authorization from you institute manager with institute stamp. - A scan of both forms with a brief introductory note should be sent to Eric Escaliere (eric.escaliere@meteo.fr) and cc'ed to Daniel Santos (dsantosm@aemet.es) and Claude Fischer (claude.fischer@meteo.fr).\nBe careful with the \"Machine du client\". I had to specify the name and IP address of my institute's Firewall server as this is what the outside world sees when I access external servers from my PC.\nMétéo-France will send (by post) your username (Identificateur) and password (Mot de passe) for log in.\nThe authentication process itself remains in two steps (first “parme”, then target), as before. \nA few specific examples follow (see MF's instructions for full details):\nbeaufix:","category":"page"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"ewhelan@realin23:gcc-8.3.1:.../~> which beaufix\nalias beaufix='telnet beaufix.meteo.fr'\n\t/usr/bin/telnet\newhelan@realin23:gcc-8.3.1:.../~> beaufix \nTrying 137.129.240.110...\nConnected to beaufix.meteo.fr.\nEscape character is '^]'.\nCheck Point FireWall-1 authenticated Telnet server running on mascarpone\nUser: whelane\npassword: your_parme_password\nUser whelane authenticated by FireWall-1 authentication\n\nConnected to 137.129.240.110\nRed Hat Enterprise Linux Server release 6.9 (Santiago)\nKernel 2.6.32-696.6.3.el6.x86_64 on an x86_64\nbeaufixlogin0 login: whelane\nPassword: your_ldap_password\nLast login: Tue Oct 13 10:15:53 from gw2.met.ie\n _ __ _ \n| | / _|(_) \n| |__ ___ __ _ _ _ | |_ _ __ __\n| '_ \\ / _ \\ / _` || | | || _|| |\\ \\/ /\n| |_) || __/| (_| || |_| || | | | > < \n|_.__/ \\___| \\__,_| \\__,_||_| |_|/_/\\_\\ \n\n[whelane@beaufixlogin0 ~]$ ","category":"page"},{"location":"System/MFaccess/#What-next?-**TO-BE-CONFIRMED**","page":"MF Access","title":"What next? TO BE CONFIRMED","text":"","category":"section"},{"location":"System/MFaccess/#Access-to-MF-servers-via-parme","page":"MF Access","title":"Access to MF servers via parme","text":"","category":"section"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"Once you are happy that you can access PARME from your PC you should once again contact Eric Escaliere (eric.escaliere@meteo.fr) and request login details for merou (Eric will send you a temporary password) and LDAP login details to front-id to enable access to COUGAR, YUKI, BEAUFIX and ID-FRONT\nAn automatic e-mail will be sent from expl-identites@meteo.fr with you LDAP repository password.\nfront-id requires certain criteria for your password. These are detailed in French below. When you have received LDAP login details for front-id:\newhelan@eddy:~> telnet parme.meteo.fr\nTrying 137.129.20.1...\nConnected to parme.meteo.fr.\nEscape character is '^]'.\nCheck Point FireWall-1 authenticated Telnet server running on parmesan\nUser: whelane\npassword: ********\nUser whelane authenticated by FireWall-1 authentication\nHost: front-id\n\nConnected to id-front\nRed Hat Enterprise Linux AS release 4 (Nahant Update 5)\nKernel 2.6.9-55.ELsmp on an x86_64\nlogin: whelane\nPassword: \nLast login: Mon Nov 4 05:14:22 from gw2.met.ie\nBienvenue EOIN WHELAN\nVous pouvez changer votre mot de passe\n-------------------------------------------------------------------------\n- Controle de validite sur les mots de passe avant de poster la demande -\n- Le OLD doit etre fourni. -\n- Au moins 8 car, au plus 20 car. -\n- Au moins 2 car. alpha et 2 car. non-alpha. -\n- Ne pas ressembler a UID NAME et OLD sur une syllabe de + de 2 car. -\n-------------------------------------------------------------------------\n-------------------------------------------------------------------------\nHello EOIN WHELAN\nYou may change your password\n-------------------------------------------------------------------------\n- Validity control before demand acceptation -\n- You must enter the old password first -\n- The new password must contain: -\n- At least 8 characters, 20 characters maximum -\n- At least 2 alphanumeric characters and 2 non-alphanumeric characters -\n- The passwd must contain a part of UID NAME -\n-------------------------------------------------------------------------\nChanging password for user 'whelane(56064)'.\nEnter login(LDAP) password: \nNew password: \nRe-enter new password: \nVotre mot de passe a ete change\nWhen you have received login details for merou from Eric:\newhelan@eddy:~> telnet parme.meteo.fr\nTrying 137.129.20.1...\nConnected to parme.meteo.fr.\nEscape character is '^]'.\nCheck Point FireWall-1 authenticated Telnet server running on parmesan\nUser: whelane\npassword: ********\nUser whelane authenticated by FireWall-1 authentication\nHost: merou\n\nConnected to merou\nRed Hat Enterprise Linux Server release 5.6 (Tikanga)\nKernel 2.6.18-238.el5 on an x86_64\nlogin: whelane\nPassword: \nLast login: Tue Nov 5 10:06:35 from gw2.met.ie\n[whelane@merou ~]$ passwd\nChanging password for user whelane.\nChanging password for whelane\n(current) UNIX password: \nNew UNIX password: \nRetype new UNIX password: \npasswd: all authentication tokens updated successfully.\n[whelane@merou ~]$ ","category":"page"},{"location":"System/MFaccess/#Access-to-(read-only)-MF-git-arpifs-git-repository","page":"MF Access","title":"Access to (read-only) MF git arpifs git repository","text":"","category":"section"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"MF use ssh keys to allow access to their read-only git repository. If approved by the HIRLAM System PL you should request access to the repository by sending a request e-mail to Eric Escaliere and cc'ed to Daniel Santos and Claude Fischer your ssh public key attached.","category":"page"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"Once you have been given access you can create a local clone by issuing the following commands:","category":"page"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"cd $HOME\nmkdir arpifs_releases\ncd arpifs_releases\ngit clone ssh://reader054@git.cnrm-game-meteo.fr/git/arpifs.git","category":"page"},{"location":"System/MFaccess/","page":"MF Access","title":"MF Access","text":"Happy gitting!","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Data-assimilation-algorithms","page":"Algorithms","title":"Data assimilation algorithms","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/#3D-Var","page":"Algorithms","title":"3D-Var","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"The default upper-air data assimilation algorithm is three-dimensional variational assimilation (3D-Var). To use 3D-Var no changes to ecf/config_exp.h should be required assuming structure function data files are available for your domain. Structure function input is defined in scr/include.ass.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Settings","page":"Algorithms","title":"Settings","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"List of 3D-Var settings that the user should be concerned about.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#4D-Var","page":"Algorithms","title":"4D-Var","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"With 43h2.2 four-dimensional variational assimilation (4D-Var) is available as a non-default option. In order to setup an experiment to use 4D-Var one should issue the following commands:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"mkdir -p /path/to/home/hm_home/MY_EXP\ncd /path/to/home/hm_home/MY_EXP\n/path/to/Harmonie/config-sh/Harmonie setup -r /path/to/Harmonie -c AROME_4DVAR","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"To use 4D-Var no changes to ecf/config_exp.h should be required assuming suitable structure function data files are available for your domain (see also ILRES in the settings section). Structure function input is defined in scr/include.ass.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Settings-2","page":"Algorithms","title":"Settings","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"List of 4D-Var settings that the user should be concerned about.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"With the following settings the working of the 4D-Var can be changed. Defaults values are given","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"NOUTERLOOP=2 # number of 4DVAR outer loops\nILRES=6,3 # Resolution (in parts of full) of outer loops as compared to the forecast resolution. The domain NLATxNLON should have the property that for the settings of ILRES both NLON/ILRES and NLAT/ILRES are of the form 5^c^ 3^d^ 2^e^, where c, d and e are integers >= 0 and e>=1.\nTSTEP4D=300,150 # Timestep length (seconds) of outer loops TL+AD\nTSTEPTRAJ=300,300 # How often the model state is saved for linearization\nNITER4D=10,15 # Maximum number of inner loop iterations in 4D-Var outer loops\nNSIMU4D=15,20 # Maximum number of cost function simulations in 4D-Var outer loops\nCH_RES_SPEC=yes # yes => change of resolution of the increment spectrally; no => by FULLPOS\nFORCE1=no # yes => tendency increment; no => analysis increment in loop 1\nFORCE2=no # yes => tendency increment; no => analysis increment in loop 2","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Schematic-work-flow-of-4D-Var","page":"Algorithms","title":"Schematic work flow of 4D-Var","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"(Image: )","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"After the screening 4DVscreen for the default 3h observation window (2h before and 1h after the start of the main forecast), \n4DVprolog prepares the initial conditions at the appropriate resolution (ILRES settings) for the forecasts used in minimization. The input here is the background BGHR (ICMSHHARM+0001 fields of the former cycle supplemented with some surface fields). \nSubsequently 4DVminim produces initially the low resolution at the beginning of the observation window (an_lowres_$loop), which is then (CH_RES_SPEC=yes in config_exp.h) transformed to the field at forecast resolution (an_hr_begwin). \nThis field is complemented in Blendhr with necessary surface fields and the resulting field (anb_hr_begwin) acts as the initial condition for the trajectory run 4DVtraj. \nFrom the 2h forecast of 4DVtraj (ICMSHTRAJ+0002 fields) the main forecast is started.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Cloudingest-Cloud-Initialization","page":"Algorithms","title":"Cloudingest - Cloud Initialization","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"The cloud initialization modifies temperature and humidity fields with help of MSGcloudYYYYMMDDHH.grib file, which contains 2-d fields of cloudtop-temperature [K], cloudmask [0-1] and cloudbase [m]. Pre cy46h the Cloudingest happened within MASTERODB in src/arpifs specifically in src/arpifs/phys_dmn/msginit.F90 routine. Since cy46h the Cloudingest uses pysurfex and gl to do the job. ","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Settings-3","page":"Algorithms","title":"Settings","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Enable Cloudingest in ecf/config_exp.h:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"USE_MSG=yes # Use MSG data for adjustment of inital profiles, EXPERIMENTAL! (no|yes), expects MSGcloudYYYYMMDDHH.grib in $OBDIR","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"And in src/include.ass:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"export CLOUD_BASE=1 # 1 and USE_MSG=true (ecf/config_exp.h) => msginit","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"to replace the cloudbase field in MSGcloudYYYYMMDDHH.grib with an OI interpolated field of SYNOP observations of CloudBaseHeights and postprocessed field of cloudbases of the first-guess file.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Ecflow-and-schematic-work-flow-of-Cloudingest","page":"Algorithms","title":"Ecflow and schematic work flow of Cloudingest","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"In case of 3DVar assimilation, the ecflow AnUA family should look like this:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"(Image: )","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"And a schematic work-flow of tasks and files involved:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"(Image: )","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"\nusing Graphviz_jll\nrun(`$(dot()) ../assets/cloudingest.dot -Tsvg -o ../assets/cloudingest.svg`)","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Incremental-Analysis-Updates-IAU","page":"Algorithms","title":"Incremental Analysis Updates - IAU","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"This is a modified and experimental version of the default implemented Forward-Facing Incremental Analysis Update, that is described elsewhere (and mainly controlled via namelist settings). This algoritm is using the same code but is changed in a few fundamental ways on the logistical plane. Instead of introducing the innovations gradually in the forecast from the analysis point (as in default 3Dvar) the analysis is done at \"t=0\" and then the forecast is started at an earlier point so that the center of the introductions of the innovations are located at the above mentioned analysis point.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"This is done through shifting the forecast start to 1h before \"t=0\" and activating a namelist change in the forecast namelist:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"NAMIAU=>{\n 'LIAU' => '.TRUE.,',\n 'TSTARTIAU' => '1800.0,',\n 'TSTOPIAU' => '5400.0,',\n 'ALPHAIAU' => '1.0,',","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Hence the forecast is running freely for 30min and then starts adding the increments during 1h centered around the \"t=0\" point, during 1h. If these times are subject of change (for example if a larger window is desired, mind that you also need to have change what files are linked to various process such as the forecast so that the correct start files are linked to that process.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Settings-4","page":"Algorithms","title":"Settings","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"If you want to try this method, or want to test it in order to develop it further there is a few thing to keep in mind. Before doing anything else you have to modify the write up times in ecf/config_exp.h so that the model have access to the startfiles that it needs inorder to start.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"From the DEFAULT:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":" LL_LIST=\"12,3\" # Forecast lengths for the cycles [h], replaces LL, LLMAIN\n HWRITUPTIMES=\"00-21:3,24-60:6\" # History file output times\n FULLFAFTIMES=$HWRITUPTIMES # History FA file IO server gather times\n PWRITUPTIMES=\"00-60:3\" # Postprocessing times\n PFFULLWFTIMES=$PWRITUPTIMES # Postprocessing FA file IO server gathering times\n VERITIMES=\"00-60:1\" # Verification output times, changes PWRITUPTIMES/SFXSELTIMES\n SFXSELTIMES=$PWRITUPTIMES # Surfex select file output times","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"to:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":" LL_LIST=\"12,6\" # Forecast lengths for the cycles [h], replaces LL, LLMAIN\n HWRITUPTIMES=\"00-06:1,06-21:3,24-60:6\" # History file output times\n FULLFAFTIMES=$HWRITUPTIMES # History FA file IO server gather times\n PWRITUPTIMES=\"00-06:1,06-60:3\" # Postprocessing times\n PFFULLWFTIMES=$PWRITUPTIMES # Postprocessing FA file IO server gathering times\n VERITIMES=\"00-60:1\" # Verification output times, changes PWRITUPTIMES/SFXSELTIMES\n SFXSELTIMES=$PWRITUPTIMES # Surfex select file output times\n # Only meaningful if SURFEX_LSELECT=yes\n SFXSWFTIMES=$SFXSELTIMES # SURFEX select FA file IO server gathering times\n SWRITUPTIMES=\"00-06:1\" # Surfex model state output times\n SFXWFTIMES=$SWRITUPTIMES # SURFEX history FA file IO server gathering times","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Then run one cycle for at least 6h so that all the prerequesite files are generated before turning on IAUVAR.\nSecond thing, when the previous run has completed, is to set the IAUVAR ecf/config_exp.h to yes and keep running. It should be automatic to continue as usual. Make sure that you do not manually set LL to be shorter then 6h.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"The surface assimilation is moved to the start of the forecast and hence it is only the upper air assimilation that is involved in the IAU.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"note: Note\nThere is a difference between the first run with IAUVAR and all the following, due to the first run couples to a run done without IAU and the others couple to a run that has done IAU, so the files used as startfiles are different in valid times. To this effect the first run saves a semaphore file in the $SCRATCH/hm_home/exp_name/ directory for the following runs to react to! So if you need to rerun the first run, for some reason, that semaphore file (named is_iauvar) needs to be manually removed!!","category":"page"},{"location":"DataAssimilation/DaAlgorithms/#Flow-diagram-of-IAU-(Magnus-will-help)","page":"Algorithms","title":"Flow diagram of IAU (Magnus will help)","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/#Variational-Constraints-(VC)","page":"Algorithms","title":"Variational Constraints (VC)","text":"","category":"section"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Balances among analysed meteorological variables in the data assimilation process can be effectively introduced by means of the well-known method of variational constraints (VC). In the case of the ALADIN-NH dynamics, its semi-implicit linear system for the non-hydrostatic fully compressible Euler equations (SI) appears as a convenient way of giving a precise definition to these constraints. An interesting feature of this method is the integration in the analysis of the vertical velocity field, which clearly must be important in convection permitting NWP. In this on-line doc resource only practical aspects on how to use this option will be mentioned, comprehensive information on this method can be found , for instance, in \"Variational Constraints for Data Assimilation in ALADIN-NH Dynamics\" Available from: https://www.researchgate.net/publication/326479446VariationalConstraintsforDataAssimilationinALADIN-NHDynamics.","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"The VC algorithm is activated by setting TRUE the LVARCONS switch in ecf/config_exp.h","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"# **** Assimilation ****\nLOOPS=\"no\"\nANAATMO=3DVAR # Atmospheric analysis (3DVAR|4DVAR|blending|none)\nLVARCONS='.TRUE.' # apply VC to analysis increments for a better balanced initial state\nIAUVAR=no\n","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Obviously this will have any effect on the analysis only when 3DVAR is active and other initialization schemes (e.g. DFI) are off. The VC algorithm is applied after the 3DVAR minimization to the analysis increments. When any of the other options for ANAATMO are active, VC will not be applied. Application of DFI or other filters on the analysis will be redundant as VC is supposed to remove much of the noise in principle present in the t=0 dynamical fields: horizontal and vertical divergence, temperature, pressure departure and surface pressure. Note that vorticity is not part of the SI system, and therefore is not processed by VC. ","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"The whole VC run configuration is controlled by means of a single the namelist NEMVARCONS to be found in nam/harmonie_namelists.pm . The default values are:","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"\n%minimization=(\n...\n\nNEMVARCONS=>{\n'VCVERBOSELEV' => '0,',\n'LVCTESTID' => '.FALSE.,',\n'lVCPLOTGF' => '.FALSE.,',\n'LVCFHD' => '.TRUE.,',\n'LVCFT' => '.TRUE.,',\n'LVCFPS' => '.TRUE.,',\n'LVCFGW' => '.FALSE.,',\n'VCWEIGHT' => '10.0,',\n'VCWEIGHTHD' => '-1.50,',\n'VCWEIGHTT' => '-1.50,',\n'VCWEIGHTPS' => '-1.50,',\n'VCWEIGHTGW' => '-1.50,',\n'LVCFGWSCALE' => '.TRUE.,',\n'VCLOGPS' => '0,',\n'VCTSTEP' => '60.0,',\n'VCPSREF' => '90000.0,',\n'VCTREF' => '350.0,',\n'VCTREFA' => '70.0,',\n},\n)\n","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Modification of these values should be done in nam/harmonie_namelists.pm itself. To use effectively VC, the user has to be aware of only a subset of these parameters :","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"'VCVERBOSELEV' => '0,', # for more detailed printouts regarding VC , raise this value ( up to 4 )\n\n'VCWEIGHT' => '10.0,', # Critical parameter of the algorithm. Gives the relative weight between increments to be\n # filtered and dynamical constraints. Values should be between 0.5 (zero not allowed !) and 10.\n # The higher the value, the less constrained is the analysis. This default value of 10\n # guarantees that final analysis increments are very close to 3DVAR increments.\n # In the many different tests done during validation and verification experiemnts,\n # a value of about 1.0 has given best results.\n\n'VCTSTEP' => '60.0,', # These parameters correspond to the SI parameters and to the time step. Although the \n'VCPSREF' => '90000.0,', # SI in forecast mode is different from the SI used by VC ( in particular the numerical \n'VCTREF' => '350.0,', # method is different ) these values should agree with those used in forecast mode for \n'VCTREFA' => '70.0,', # optimal performance\n},\n","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"Maybe the only other information that is required to effectively use this VC algorithm, concerns the parameters :","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"'VCWEIGHTHD' => '-1.50,',\n'VCWEIGHTT' => '-1.50,',\n'VCWEIGHTPS' => '-1.50,',","category":"page"},{"location":"DataAssimilation/DaAlgorithms/","page":"Algorithms","title":"Algorithms","text":"They enable the flexibility of considering different weights for different 3DVAR analysis increments. When VC operates with a low VCWEIGHT value (strongly constrained mode), it can remove some overfitting to wind, temperature and/or surface pressure observations, and this may produce an apparent degradation in operational verification curves close to t=0. These three parameters permit adjust individually each variable. Note that negative values ( as in the default ) automatically reverts to the VCWEIGHT value. ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC","page":"MUSC","title":"MUSC","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-using-the-develop-branch-(CY46)-in-the-git-repository","page":"MUSC","title":"MUSC using the develop branch (CY46) in the git repository","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"If you find any issues with any of the instructions or scripts, feel free to notify Emily Gleeson (emily.gleesonATmet.ie) and Eoin Whelan (eoin.whelanATmet.ie)","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Currently a \"reference\" test case, called musc_ref, works on ATOS, as well as the ARMCU cases (with and without SURFEX for both AROME and HARMONIE namelists) and the two microphysics-related cases (supercooled liquid) developed by Bjorg Jenny Engdahl in cycle 40. ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Some instructions on how to use MUSC are included below. See here for some information on HARMONIE-AROME experiments using MUSC but note that the scripts have changed somewhat since that paper was written.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Set-up-MUSC","page":"MUSC","title":"Set up MUSC","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Get the code:\nmkdir -p $SCRATCH/harmonie_releases/git/HCY46\ncd $SCRATCH/harmonie_releases/git/HCY46\ngit clone git@github.com:Hirlam/Harmonie.git\ncd Harmonie\ngit checkout dev-CY46h1 \n# If you already have a clone of the code but want to update it to the latest version, \nuse \"git pull\" rather than \"git branch\".\nSet up a MUSC experiment using HARMONIE scripting \nIn this example the ECMWF.atos config file is used. \nmkdir -p $HOME/hm_home/test_0001\ncd $HOME/hm_home/test_0001\n$SCRATCH/harmonie_releases/git/HCY46/Harmonie/config-sh/Harmonie setup -r $SCRATCH/harmonie_releases/git/HCY46/Harmonie/ -h ECMWF.atos \nCompile your experiment (still in $HOME/hm_home/test_0001)\n$SCRATCH/harmonie_releases/git/HCY46/Harmonie/config-sh/Harmonie install BUILD_WITH=cmake\n# Note that for the ARMCU cases cmake needs FFT modifications (not yet committed by Yurii)\nSome MUSC specific settings including copying over scripts and a check that Harmonie setup has been run\n$SCRATCH/harmonie_releases/git/HCY46/Harmonie/util/musc/scr/musc_setup.sh -r $SCRATCH/harmonie_releases/git/HCY46/Harmonie/\nGenerate your namelist, unless you're using an idealised case with pre-defined namelists (so for ARMCU* you do not generate the namelists for example). If you wish to change the radiation scheme (RADSCHEME- RAYFM (IFS) or RAY (ACRANEB2)) or how you use aerosols (BDAER - cams or none), you need to edit ecf/configexp.h in your expt before running muscnamelist.sh. For using NRT aerosols, they need to be included in your input files already e.g. the MUSCIN* files should come from a 3D NRT aerosol expt.\ncd $HOME/hm_home/test_0001\n./musc_namelist.sh -h\n./musc_namelist.sh -l -i \n -[N nudging - optional]\nGet a copy of the input files\ncd $SCRATCH\nretrieve the input files from https://github.com/Hirlam/HarmonieMuscData","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Note that if you need to do experiments with 2 patches etc, ensure you derive some MUSC input files yourself using 3D HARMONIE-AROME files run with 2 patches. MUSC*REFL65* input files have only 1 patch. Changing MUSC namelists won't enable 2 patch output from a MUSC run.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Run-MUSC","page":"MUSC","title":"Run MUSC","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Musc_ref","page":"MUSC","title":"Musc_ref","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"The reference test is a X-hr experiment (change CSTOP in musc_namelist.sh if you wish to change the run length) and produces Out *lfa files for each model time-step of the time period. ICM* files are produced at each hour.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Run your experiment\ncd $HOME/hm_home/test_0001\n./musc_run.sh -h\n./musc_run.sh -d $SCRATCH/muscCY46InputData/musc_ref -n REFL65 -i DEF [ -e ECOCLIMAP_PATH]\n# optional path for ECOCLIMAP data may be given. For musc_ref -i must be given as no \n# namelists are provided with this experiment and must be generated before musc_run.sh \n# is executed. For the idealised cases, if -i is not specified -i becomes the name of \n# the idealised case once the namelist files are copied to $HOME/hm_home/test_0001 e.g. \n# for armcu the namelist files become namelist_atm_armcu etc.\n","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#ARMCU","page":"MUSC","title":"ARMCU","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"** Note that these will not work until we can compile with FFTW.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"This is an idealized SCM test case, the \"Sixth GCSS WG-1 case (ARM—Atmospheric Radiation Measurement)\", focussing on the diurnal cycle of cumulus clouds over land (Brown et al, 2002, Lenderink et al, 2004. The input files and namelist settings have been taken from /src/validation/mitraille/namelist/L1ARO but the atmospheric namelist needed editing for use in our environment. Atmospheric and surface forcings are included in the MUSC input files and the namelists in the util/musc/test/armcu directory are set up specifically for this case and are hence not edited by musc_run.sh.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Run your experiment\ncd $HOME/hm_home/test_0001\n./musc_run.sh -h\n./musc_run.sh -d $HOME/muscCY46InputData/ARMCU_HAR -n ARMCU (There are now 4 ARMCU experiments to chose from e.g. ARMCU_EB and ARMCUs_EB are ones that use AROME namelists, ARMCU_Har and ARMCUs_Har use HARMONIE-AROME namelists. Currently, the results are a bit different.)","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-Output","page":"MUSC","title":"MUSC Output","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/#DDH-Toolbox","page":"MUSC","title":"DDH Toolbox","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"The outputs from a MUSC run are small files in lfa format. DDH tools can be used to handle these files.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"To download the DDH toolbox, go to https://www.umr-cnrm.fr/gmapdoc/spip.php?article19 and download the tarball. Untar it and within the tools folder run ./install. Now the various \"tools\" are compiled. For example lfaminm $file shows you the max, min and mean of all the output variables in a file. lfac $file $var shows the value(s) of $var in $file e.g. lfac Out.000.0000.lfa PTS shows you surface temperature. In order to be able to use the plotting scripts below, you'll need the lfac tool in your path. ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"For example on ATOS, I set the following paths (may differ a bit for you depending on where you downloaded the ddhtools to). Perhaps add to your .bashrc file:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"export PATH=$HOME/ddhtoolbox/tools/lfa/:$PATH\nexport DDHI_BPS=$HOME/ddhtoolbox/ddh_budget_lists/\nexport DDHI_LIST=$HOME/ddhtoolbox/ddh_budget_lists/conversion_list","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Plot-output-time-series-from-the-MUSC-output-lfa-files","page":"MUSC","title":"Plot output time-series from the MUSC output lfa files","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"cd $HOME/hm_home/test_0001\n./musc_plot1Dts.sh -d \n\n## python based plotting scripts and \"default\" png plots \n## will be produced in $HOME/hm_home/test_0001/plots1Dts\n","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Extract-output-from-the-MUSC-output-ICM*-fa-files-and-plot-time-series-using-these","page":"MUSC","title":"Extract output from the MUSC output ICM* fa files and plot time-series using these","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"By default you get ICM* files on the hour - you can change the namelist should you require a higher frequency.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"cd $HOME/hm_home/test_0001\n./musc_convertICM2ascii.sh -l -f \n\n## Generates an OUT ascii file for each atm and sfx ICM* input file\n## ICM files have additional input not in lfa files e.g. TKE which is useful - also similar to 3D outputs\n\n./musc_plot_profiles_ICMfiles.sh -d -p -l \n","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Creating-your-own-input-files","page":"MUSC","title":"Creating your own input files","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"A converter script, musc_convert.sh, is available to extract a MUSC column from a model state file (ICMSHHARM+HHHH). musc_convert.sh is a Bash script that calls gl_grib_api to carry the data conversions.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Extract-a-MUSC-input-file","page":"MUSC","title":"Extract a MUSC input file","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"cd $HOME/hm_home/test_0001\n./musc_convert.sh -d $HOME/muscCY46InputData/harm_arome/ -c extr3d -n REFIRL -l 53.5,-7.5 -t 6\nmkdir $HOME/muscCY46InputData/musc_refirl\ncp MUSCIN_REFIRL_atm.fa MUSCIN_REFIRL_sfx.fa MUSCIN_REFIRL_pgd.fa $HOME/muscCY46InputData/musc_refirl/","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Convert-MUSC-FA-to-MUSC-ASCII","page":"MUSC","title":"Convert MUSC FA to MUSC ASCII","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"cd $HOME/hm_home/test_0001\n./musc_convert.sh -c fa2ascii -d $HOME/muscCY46InputData/musc_refirl -n REFIRL\nls -ltr\ncp MUSCIN_REFIRL_atm.ascii MUSCIN_REFIRL_sfx.ascii $HOME/muscCY46InputData/musc_refirl/","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Convert-MUSC-ASCII-to-MUSC-FA","page":"MUSC","title":"Convert MUSC ASCII to MUSC FA","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"cd $HOME/hm_home/test_0001\n./musc_convert.sh -c ascii2fa -d $HOME/muscCY46InputData/musc_refirl -n REFIRL\nls -ltr","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Forcing-in-MUSC","page":"MUSC","title":"Forcing in MUSC","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"musc_convert.sh includes forcing for temperature (11), humidity (51) and wind speed (32) . ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"You may edit the following lines to include other forcing:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":" PPPKEY(1:4)%shortname = 'ws','#','#','#',\n PPPKEY(1:4)%faname = '#','SNNNFORC001','SNNNFORC002','SNNNFORC003'\n PPPKEY(1:4)%levtype = 'hybrid','hybrid','hybrid','hybrid',\n PPPKEY(1:4)%level = -1,-1,-1,-1,\n PPPKEY(1:4)%pid = 32,-1,-1,-1,\n PPPKEY(1:4)%nnn = 0,0,0,0,\n PPPKEY(1:4)%lwrite = F,T,T,T,\n IFORCE = 11,51,32,","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Further information on forcing is available here: MUSC/Forcing","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-local-adaptation","page":"MUSC","title":"MUSC local adaptation","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/#KNMI-workstations","page":"MUSC","title":"KNMI workstations","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"The following files were added to make it possible to run MUSC on KNMI workstations:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"config-sh/config.LinuxPC-MPI-KNMI\nconfig-sh/submit.LinuxPC-MPI-KNMI\nutil/makeup/config.linux.gfortran.mpi-knmi ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"for use with the setup script:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"./musc_setup.sh [...] -c LinuxPC-MPI-KNMI","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"In addition, the following workaround has to be applied to be able to run the REFL65 test case:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"$ git diff src/ifsaux/utilities/echien.F90\ndiff --git a/src/ifsaux/utilities/echien.F90 b/src/ifsaux/utilities/echien.F90\nindex 55d5ce94e..694c87d83 100644\n--- a/src/ifsaux/utilities/echien.F90\n+++ b/src/ifsaux/utilities/echien.F90\n@@ -532,7 +532,7 @@ IF((KINF == 0).OR.(KINF == -1).OR.(KINF == -2).OR.(KINF == -3)) THEN\n & 'LEVEL ',JFLEV,' : ',&\n & 'FILE = ',ZVALH(JFLEV), ' ; ARGUMENT = ',PVALH(JFLEV)\n IERRA=1\n- IERR=1\n+! IERR=1\n ENDIF\n IF(ABS(ZVBH(JFLEV)-PVBH(JFLEV)) > PEPS) THEN\n WRITE(KULOUT,*) ' VERTICAL FUNCTION *B* MISMATCH ON ',&","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"Then you are ready to compile:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"remove the file experimentislocked from the experiment directory.\nremove the directory with your previous build (if any).\nstart the compile with the musc_compile.sh script","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"When starting the MUSC run, add the PATH to mpirun and the libraries:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"export PATH=$PATH:/usr/lib64/openmpi/bin\nexport LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/openmpi/lib\n./musc_run.sh [...]","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-FAQ","page":"MUSC","title":"MUSC FAQ","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"If there is an error, what files do I look in? NODE.001_01 and lola in your output directory.\nHow to I handle the output files? The output files are of the form Out.XXX.XXXX and appear in your output directory. There are in lfa format and can be handled using ddh tools. See the bash script musc_plot1Dts.sh for ideas. There are also ICM*lfa output files that are also handy for plotting profiles - use musc_convertICM2ascii.sh to convert these files to ASCII and musc_plot_profiles_ICMfiles.sh to plot some profiles e.g. TKE, cloud liquid etc.\nI ran a different idealised case but did not get different results? The likely reason for this is that you did not delete the namelists from your experiment directory. If the namelists are there, the musc_run.sh script neither creates them nor copies them from the repository.\nHow do I create a new idealised case? This is not straightforward but the following was used to create the ASTEX cases in cy43 using info from cy38: https://www.overleaf.com/7513443985ckqvfdcphnng\nHow can I access a list of MUSC output parameters? Ensure you have the ddhtoolbox compiled. Then use lfaminm $file on any of your output files and it will show what is there. To look at a particular variable try lfac $file $parameter e.g. lfac $file PTS (for surface temperature). You can use cat to copy the values to an ASCII file for ease of use (e.g. lfac $file PTS > $ASCIIfile). \nIs MUSC similar to the full 3D model version - is the physics the same? Yes, if you checkout develop then you have MUSC up-to-date with that.\nDo I need to recompile the model if I modify code? Yes, if you modify code in a single file you must recompile the code but do not delete the original compiled model first. This will recompile relatively quickly. If you modify code in multiple files and you change what variables are passed between files, then you must delete your original compiled model and recompile the code. This will take longer to recompile. ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-variable-names","page":"MUSC","title":"MUSC variable names","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"A list of variable names found in the MUSC lfa output files can be found here. Please note that this is not a complete list of MUSC output parameters (yet). The variables in regular ICMSH... fa output are documented here","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#Outstanding-Issues","page":"MUSC","title":"Outstanding Issues","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"ARMCU and Jenny's cases run without surface physics, radiation etc and hence return NANs in apl_arome. To circumvent this on ECMWF, we needed to compile less strictly. This needs to be investigated further.\nThe ASTEX cases currently do not run on ECMWF but work perfectly at Met Eireann - debugging needed.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC/#MUSC-using-EMS","page":"MUSC","title":"MUSC using EMS","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC/","page":"MUSC","title":"MUSC","text":"These instructions have moved to MUSC EMS","category":"page"},{"location":"EPS/SPPImplementation/#The-SPP-implementation-in-IAL-and-HARMONIE","page":"SPP implementation","title":"The SPP implementation in IAL and HARMONIE","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"The Stochastically Perturbed Parameterizations scheme (SPP) introduces stochastic perturbations to values of chosen closure parameters representing efficiencies or rates of change in parameterized atmospheric (sub)processes. See here for more information. See the main SPP documentation for selection of settings.","category":"page"},{"location":"EPS/SPPImplementation/#Controling-routines","page":"SPP implementation","title":"Controling routines","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"The SPP data structure and logics is controlled by the following routines","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"Routine Description\nsrc/arpifs/module/spp_mod.F90 Defines SPP scheme types TSPP_CONFIG_PAR and TSPP_CONFIG for the parameter config and the overall config respectively\nsrc/arpifs/module/spp_mod_type.F90 Harmonie specific data types TSPP_CONFIG_TYPE, ATM_SPP_VARS, SFX_VARS, control and the methods CLEAR_SSP_TYPE, SET_SPP_TYPE, APPLY_SPP, APPLY_SPP_SURFEX, DIA_SPP, SET_ALL_ATM_SPP, SET_ALL_SFX_SPP, CLEAR_ALL_ATM_SPP, CLEAR_ALL_SFX_SPP\nsrc/surfex/SURFEX/modd_sfx_spp.F90 SURFEX specific data types, control and methods CLEAR_SFX_SPP, SET_SFX_SPP, APPLY_SFX_SPP, CLEAR_ALL_SFX_SPP, SPP_MASK, SPP_DEMASK, PREP_SPP_SFX. Partly duplicates spp_mod_type.F90\nsrc/arpifs/namelist/namspp.nam.h The SPP namelist\nsrc/arpifs/setup/get_spp_conf.F90 Setup defaults and read the SPP namelist. Initialises the SPG parameters\nsrc/arpifs/phys_dmn/ini_spp.F90 Initialises the pattern used for SPP\nsrc/arpifs/phys_dmn/evolve_spp.F90 Control routine for pattern propagation\nsrc/mse/internals/aroset_spp.F90 Initialises the SURFEX part of SPP","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"Note that the control routines shared with IFS will be totally rewritten, and much neater, with the introduction of CY49T1. See e.g. spp_def_mod.F90, spp_gen_mod.F90 ","category":"page"},{"location":"EPS/SPPImplementation/#SPG-routines","page":"SPP implementation","title":"SPG routines","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"The pattern used for SPP within HARMONIE is SPG and the code for this is found under src/utilities/spg. For the propagation of the pattern we find the routine EVOLVE_ARP_SPG in src/arp/module/spectral_arp_mod.F90","category":"page"},{"location":"EPS/SPPImplementation/#Applying-the-patterns","page":"SPP implementation","title":"Applying the patterns","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"In apl_arome.F90 the HARMONIE specific data types are initialised with SET_ALL_ATM_SPP and SET_ALL_SFX_SPP. These routine groups the different parameters and connects them to a pattern and a the correct diagnostic field EZDIAG if requested.","category":"page"},{"location":"EPS/SPPImplementation/#Applying-the-patterns-in-the-upper-air-part","page":"SPP implementation","title":"Applying the patterns in the upper air part","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"In the routine were a specific parameter is used the pattern is applied by calling APPLY_SPP. This is done for each parameter accoding to the table below.","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"Perturbation Routine\nRADGR src/arpifs/phys_dmn/apl_arome.F90\nRADSN src/arpifs/phys_dmn/apl_arome.F90\nRFAC_TWOC src/arpifs/phys_dmn/vdfexcuhl.F90\nRZC_H src/arpifs/phys_dmn/vdfexcuhl.F90\nRZL_INF src/arpifs/phys_dmn/vdfexcuhl.F90\nRZMFDRY src/arpifs/phys_dmn/vdfhghtnhl.F90\nRZMBCLOSURE src/arpifs/phys_dmn/vdfhghtnhl.F90\nCLDDPTHDP src/arpifs/phys_dmn/vdfhghtnhl.F90\nRLWINHF src/arpifs/phys_radi/recmwf.F90\nRSWINHF src/arpifs/phys_radi/recmwf.F90\nPSIGQSAT src/mpa/micro/internals/condensation.F90\nICE_CLD_WGT src/mpa/micro/internals/condensation.F90\nICENU src/mpa/micro/internals/rain_ice_old.F90\nKGN_ACON src/mpa/micro/internals/rain_ice_old.F90\nKGN_SBGR src/mpa/micro/internals/rain_ice_old.F90\nALPHA src/mpa/micro/internals/rain_ice_old.F90\nRZNUC src/mpa/micro/internals/rain_ice_old.F90","category":"page"},{"location":"EPS/SPPImplementation/#Applying-the-patterns-in-SURFEX","page":"SPP implementation","title":"Applying the patterns in SURFEX","text":"","category":"section"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"As SURFEX should have no dependencies to external modules the data is copied into the internalt SURFEX SPP data structure in AROSET_SPP called from ARO_GROUND_PARAM.","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"For SURFEX the parameter table looks like","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"Perturbation Routine\nCV src/surfex/SURFEX/coupling_isban.F90\nLAI src/surfex/SURFEX/coupling_isban.F90\nRSMIN src/surfex/SURFEX/coupling_isban.F90\nCD_COEFF -\nCH_COEFF -","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"In SURFEX we also have to pack/unpack the data arrays to only use the active points for a specific tile or patch. This is done in the SPP_MASK and SPP_DEMASK routines found in src/surfex/SURFEX/modd_sfx_spp.F90 and called from src/surfex/SURFEX/coupling_surf_atmn.F90. At the time of writing returning the diagnostics of the pattern doesn't work satisfactory.","category":"page"},{"location":"EPS/SPPImplementation/","page":"SPP implementation","title":"SPP implementation","text":"The additional code changes done for SPP in SURFEX can be viewed here","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#NWECHKEVO","page":"NWECHKEVO","title":"NWECHKEVO","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/#Introduction","page":"NWECHKEVO","title":"Introduction","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"The new utility NWECHKEVO was introduced in order to make the generation of diagnostics for the study of spin-up in dynamics effects more efficient. The utility CHKEVO turned out to slow down the forecast run to unpractical times. NWECHKEVO produces timeseries for the variables log(Ps), horiz. vorticity, horiz. divergence, vertical divergence, pressure departure and temperature for the first 180 timesteps of integration at timestep resolution. These timeseries are produced at selected points within the domain and at all levels for the last upper-air five variables (HVor, HDiv, VDiv, PD and T). ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#Preparations.-NAMCHK-namelist","page":"NWECHKEVO","title":"Preparations. NAMCHK namelist","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"The user must select a list of points at which locations he wants the diagnostics to be generated. The coordinates are given in GPx and GPy coordinates, not geographical coordinates. These co-ordinates are then introduced in the namelist NAMCHK as in the following example ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NAMCHK=>{\n 'NGPCHK' => '17,',\n 'NXCHK(1:17)' => '263,335,447,525,606,390,420,540,644,333,509,329,388,480,266,259,271,',\n 'NYCHK(1:17)' => '462,472,469,398,388,406,325,284,300,293,243,215,167,178,358,279,200,',\n },","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NB: These points correspond to the locations of 17 different weather radars in the domain ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"'IBERIAxxm_2.5'=>{\n 'TSTEP' => '60',\n 'NLON' => '800',\n 'NLAT' => '648',\n 'LONC' => '-4.5',\n 'LATC' => '40.0',\n 'LON0' => '-4.5',\n 'LAT0' => '40.0',\n 'GSIZE' => '2500.',\n },","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"The default value for LNWECHKEVO is set to FALSE in suechk.F90. To enable this option, set LNWECHKEVO=.TRUE in ecf/config_exp.h. This isetting will be carried over to scr/Forecast at the time of namelist_forecast specification. NWECHKEVO takes priority over ECHKEVO, that is, when LNWECHKEVO=.TRUE., LECHKEVO is set to FALSE no matter what is specified at the namelist level ( awarning message will appear in the logs). This is so in order to avoid conflicts between the previous and the new utilities. If the user wants the previous method just activate LECHKEVO and make sure not to activate LNWECHKEVO.","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#Important-Info","page":"NWECHKEVO","title":"Important Info","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NWECHKEVO speeds up the generation of diagnostics by minimizing MPI overhead. During the set-up, it is determined which MPI-task processes each point igiven via NAMCHK. The internal arrays that contain this info are given a size such that no more than 10 points can be handled by each MPI-task. Therefore, when running with a small number of MPI-tasks it is possible that some of the points in NAMCHK are ignored. This situation however is very unlikely because the usual number of MPI-tasks is quite big. Nonetheless, the parameter NWJPGPCHK (in module YOMCHK) can be given a bigger value if necessary.","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#Modifications-in-scr/Forecast","page":"NWECHKEVO","title":"Modifications in scr/Forecast","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"For ease of use, NWECHKEVO dumps the results in text format to the standard output ( /NODE* files ). The size of these files remains managable unless the number of points in NAMCHK is very big. As the diagnostics are generated avoiding MPI comms., the standard output for all tasks must be activated by using the NOUTPUT parameter in NAMPAR0. This is reason why scr/Forecast must be modified. ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#Results","page":"NWECHKEVO","title":"Results","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"The results can be easily obtained by grepping out from the NODEs files. First , in order to know which NODE file contains a given point we can do on NODE.001_01","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"grep SETUPNEWECHKEVO NODE.001_01","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"obtaining a table like this","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"SETUPNEWECHKEVO: JPROC 120 ISETA= 8 ISETB= 8 ISETW= 8 ISETV= 8\nSETUPNEWECHKEVO: IGP= 13 (nychk,nxchk)= 167 388 CC in chunk= 1032\nSETUPNEWECHKEVO: JPROC 138 ISETA= 9 ISETB= 10 ISETW= 9 ISETV= 10\nSETUPNEWECHKEVO: IGP= 14 (nychk,nxchk)= 178 480 CC in chunk= 527","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"which indicates that GP number 13 (co-ordinates 167,388) on the NAMCHK is allocated to MPI-task 120. The point has ordinate number 1032 within the domain chunk assigned to this MPI-task. It outputs to NODE.008_08","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"Once we know the NODE file for this GP, we grep out again the results. For PS","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"grep NWECHKEVO:PS NODE.008_08","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NWECHKEVO:PS 13 000 0.11505382282124E+02 0.99248519555856E+05\nNWECHKEVO:PS 13 001 0.11505380867601E+02 0.99248379166582E+05\nNWECHKEVO:PS 13 002 0.11505354069965E+02 0.99245719580317E+05\nNWECHKEVO:PS 13 003 0.11505387331977E+02 0.99249020747545E+05\nNWECHKEVO:PS 13 004 0.11505409155285E+02 0.99251186713122E+05\nNWECHKEVO:PS 13 005 0.11505330599600E+02 0.99243390274322E+05\nNWECHKEVO:PS 13 006 0.11505214514108E+02 0.99231870225232E+05\nNWECHKEVO:PS 13 007 0.11505186261496E+02 0.99229066705312E+05\nNWECHKEVO:PS 13 008 0.11505301938506E+02 0.99240545891039E+05\nNWECHKEVO:PS 13 009 0.11505222637195E+02 0.99232676297636E+05\nNWECHKEVO:PS 13 010 0.11505173119706E+02 0.99227762666337E+05","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"the second column is the GP number, the third the time step, the fourth is log(Ps) and the fith is fo Ps (Pa)","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"For the upper-air variables we do","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"grep 'NWECHKEVO:UA 13' NODE.008_08 ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NWECHKEVO:UA 13 000 001 0.14364086697030E-04 -0.50805426278410E-05 0.22599560795742E+03 0.00000000000000E+00 0.80040376159261E-07\nNWECHKEVO:UA 13 000 002 0.33741231171738E-05 0.97134353537265E-05 0.21290057631960E+03 0.00000000000000E+00 0.29001061928223E-06\nNWECHKEVO:UA 13 000 003 0.69003223306262E-05 -0.10070828988605E-04 0.21384249855800E+03 0.00000000000000E+00 0.47109613483406E-06\nNWECHKEVO:UA 13 000 004 -0.30497765593290E-06 0.82334865627784E-05 0.21374844679188E+03 0.00000000000000E+00 -0.26145222191521E-06\nNWECHKEVO:UA 13 000 005 0.26070697062412E-04 -0.12291493034515E-04 0.21545103834209E+03 0.00000000000000E+00 0.39088530137662E-05\nNWECHKEVO:UA 13 000 006 0.15371311363862E-04 0.52048057489868E-05 0.21791733622236E+03 0.00000000000000E+00 0.81362351433664E-05\nNWECHKEVO:UA 13 000 007 0.51032970986510E-04 -0.13111824709755E-04 0.22004808804352E+03 0.00000000000000E+00 0.15756687491581E-04\nNWECHKEVO:UA 13 000 008 -0.19648225032526E-04 -0.10918787276801E-04 0.22163556827039E+03 0.00000000000000E+00 0.64289394144994E-05\nNWECHKEVO:UA 13 000 009 -0.17176145579185E-05 0.45899398495276E-04 0.22275608584458E+03 0.00000000000000E+00 -0.10037800019117E-04\n....\nNWECHKEVO:UA 13 000 056 0.13986028555310E-02 -0.66909930879866E-03 0.28628543762220E+03 0.00000000000000E+00 0.54829685721891E-03\nNWECHKEVO:UA 13 000 057 0.14038615170298E-02 -0.75779689206785E-03 0.28663735655175E+03 0.00000000000000E+00 0.59806781225837E-03\nNWECHKEVO:UA 13 000 058 0.13261896477891E-02 -0.74616001898282E-03 0.28698938510509E+03 0.00000000000000E+00 0.49588753382099E-03\nNWECHKEVO:UA 13 000 059 0.14489950905375E-02 -0.74227210464472E-03 0.28734520941903E+03 0.00000000000000E+00 0.27710629383431E-03\nNWECHKEVO:UA 13 000 060 0.17744491137974E-02 -0.61965914425958E-03 0.28761932093752E+03 0.00000000000000E+00 0.40814002634823E-03\nNWECHKEVO:UA 13 000 061 0.19899360944093E-02 -0.54623343124852E-03 0.28790566719217E+03 0.00000000000000E+00 0.47915020836391E-03\nNWECHKEVO:UA 13 000 062 0.23402553668209E-02 -0.78436980306753E-03 0.28827960078154E+03 0.00000000000000E+00 0.37896218758797E-03\nNWECHKEVO:UA 13 000 063 0.20467568555637E-02 -0.11207508904165E-02 0.28854880261461E+03 0.00000000000000E+00 0.46291124700252E-03\nNWECHKEVO:UA 13 000 064 0.16656728750091E-02 -0.10495856132860E-02 0.28883596008959E+03 0.00000000000000E+00 0.25911350987737E-03\nNWECHKEVO:UA 13 000 065 0.14631444722784E-02 -0.94533311737612E-03 0.28903858779818E+03 0.00000000000000E+00 0.64914638106075E-05","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"which gives at timestep 0 ( third col.) the profile (model level is fourth column) for HVor(s-1), Hdiv (s-1), T (K), PD (Pa for NPDVAR=2) and VD (units depend on NVDVAR definition) ","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"Consecutive timesteps follow","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"NWECHKEVO:UA 13 001 001 0.14391950814966E-04 -0.10126750142077E-04 0.22601300427477E+03 0.26233794693211E-05 0.13011272170719E-05\nNWECHKEVO:UA 13 001 002 0.35975280461999E-05 0.30191811529161E-05 0.21293465156805E+03 -0.29989147375432E-04 0.10063954562282E-06\nNWECHKEVO:UA 13 001 003 0.79264193785264E-05 -0.15031046611816E-04 0.21385134119954E+03 -0.33856415073342E-04 0.42661347477312E-05\nNWECHKEVO:UA 13 001 004 0.21090675053822E-05 0.31713133370971E-05 0.21377935010403E+03 -0.40445121858208E-04 -0.54989449665528E-05\nNWECHKEVO:UA 13 001 005 0.30451493480920E-04 -0.18284403001908E-04 0.21545646796919E+03 -0.42130887042681E-04 0.14684047934687E-04\n....","category":"page"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"up to timestep 180 (hard-coded,the first 3 hours if timestep 1 minute)","category":"page"},{"location":"DataAssimilation/NWECHKEVO/#Plotting","page":"NWECHKEVO","title":"Plotting","text":"","category":"section"},{"location":"DataAssimilation/NWECHKEVO/","page":"NWECHKEVO","title":"NWECHKEVO","text":"The results are easily plotted with any graphs utility (e.g. gnuplot)","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#ecmwfatos","page":"Running on Atos","title":"Running Harmonie on Atos","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Before-you-start","page":"Running on Atos","title":"Before you start","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"New Harmonie users will require membership of the accord user group at ECMWF. Please contact the HIRLAM System Manager, Daniel Santos, to make this request on your behalf. Futhermore ECMWF will have to setup a virtual machine for you to run the ecFlow server on (see here). Finally, make sure that your login shell is set to /bin/bash.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"tip: Tip\nTo share your experiments with the members of the accord group do: chmod 755 $HOME $SCRATCH $PERM $HPCPERM\nchgrp -R accord $HOME/hm_home $SCRATCH/hm_home $HOME/HARMONIE $HPCPERM/hm_home\nchmod g+s $HOME/hm_home $SCRATCH/hm_home $HOME/HARMONIE $HPCPERM/hm_homeThe chmod g+s sets the SGID bit which will ensure that new experiments created in hm_home will automatically be in the accord group","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Configure-your-experiment-(option-1)","page":"Running on Atos","title":"Configure your experiment (option 1)","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Create an experiment directory under $HOME/hm_home and use the master script Harmonie to set up a minimum environment for your experiment. \nmkdir -p $HOME/hm_home/my_exp\ncd $HOME/hm_home/my_exp\nln -sf /path/to/git/repository/config-sh/Harmonie\n./Harmonie setup -r /path/to/git/repository -h ECMWF.atos\nwhere \n-r Specifies the path to the git repository. Make sure you have checkout-ed the correct branch. \n-h tells which configuration files to use. At ECMWF config.ECMWF.atos is the default one. For harmonie-43h2.2 use -h config.aa\ntip: Tip\nAn Atos tagged versions of Harmonie are available in ~hlam/harmonie_release/git/tags/ln -sf ~hlam/harmonie_release/git/tags//config-sh/Harmonie \nHarmonie setup -r ~hlam/harmonie_release/git/tags/ -h ECMWF.atos","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"This would give you the default setup which currently is AROME physics with CANARI+OI_MAIN surface assimilation and 3DVAR upper air assimilations with 3h cycling on a domain covering Denmark using 2.5km horizontal resolution and 65 levels in the vertical.\nNow you can edit the basic configuration file ecf/config_exp.h to configure your experiment scenarios. Modify specifications for domain, data locations, settings for dynamics, physics, coupling host model etc. Read more about the options here. You can also use some of the predefined configurations by calling Harmonie with the -c option:\n./Harmonie setup -r PATH_TO_HARMONIE -h YOURHOST -c CONFIG -d DOMAIN\nwhere CONFIG is one of the setups defined in scr/Harmonie_configurations.pm. If you give -c without an argument or a non existing configuration a list of configurations will be printed.\nIn some cases you might have to edit the general system configuration file config-sh/config.ECMWF.atos. See here for further information. \nThe rules for how to submit jobs on Atos are defined in config-sh/submit.ECMWF.atos. See here for further information\nIf you experiment in data assimilation you might also want to change settings in scr/include.ass.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Configure-your-experiment-using-github-repo-(option-2)","page":"Running on Atos","title":"Configure your experiment using github repo (option 2)","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Disadvantage of option 1 for version control in git is that code is located in two places. Instead you can : ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Make a fork of the Harmonie repository. From now we assume your fork will be located at https://github.com//Harmonie.\nLog in to ATOS as usual and perform the following commands:","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"mkdir -p $PERM/hm_home && cd $PERM/hm_home/\ngit clone -b git@github.com:/Harmonie.git \ncd \ngit checkout -b \nexport PERL5LIB=$(pwd)\nconfig-sh/Harmonie setup -r $(pwd) -h ECMWF.atos","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Where the git clone command clones a specific branch into a directory called . git checkout with the -b flag, then creates a new branch for you to work on. Call it something meaningful. Then the experiment is set up as usual, but using your local repository as reference to itself.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Then you do some work and when ready to commit something you do","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"git add \ngit commit --author \"Name \" -m \"Commit message\"\ngit push --set-upstream origin ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Specifying --set-upstream origin to git push is only necessary the first time you push your branch to the remote. When ready you can now go to GitHub and make a pull-request to the Harmonie repository from your fork.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Start-your-experiment","page":"Running on Atos","title":"Start your experiment","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Launch the experiment by giving start time, DTG, end time, DTGEND","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"./Harmonie start DTG=YYYYMMDDHH DTGEND=YYYYMMDDHH\n# e.g., ./Harmonie start DTG=2022122400 DTGEND=2022122406","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"If successful, Harmonie will identify your experiment name and start building your binaries and run your forecast. If not, you need to examine the ECFLOW log file $HM_DATA/ECF.log. $HM_DATA is defined in your Env_system file. At ECMWF $HM_DATA=$SCRATCH/hm_home/$EXP where $EXP is your experiment name. Read more about where things happen further down.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Continue-your-experiment","page":"Running on Atos","title":"Continue your experiment","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"If your experiment have successfully completed and you would like to continue for another period you should write","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"./Harmonie prod DTGEND=YYYYMMDDHH","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"By using prod you tell the system that you are continuing the experiment and using the first guess from the previous cycle. The start date is take from a file progress.log created in your $HOME/hm_home/my_exp directory. If you would have used start the initial data would have been interpolated from the boundaries, a cold start in other words.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Start/Restart-of-ecflow_ui","page":"Running on Atos","title":"Start/Restart of ecflow_ui","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"To start the graphical window for ECFLOW","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"./Harmonie mon","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"The graphical window runs independently of the experiment and can be closed and restarted again with the same command. With the graphical interface you can control and view logfiles of each task. ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Making-local-changes","page":"Running on Atos","title":"Making local changes","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Very soon you will find that you need to do changes in a script or in the source code. Once you have identified which file to edit you put it into the current $HOME/hm_home/my_exp directory, with exactly the same subdirectory structure as in the reference. e.g, if you want to modify a namelist setting ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"./Harmonie co nam/harmonie_namelists.pm # retrieve default namelist harmonie_namelists.pm\nvi nam/harmonie_namelists.pm # modify the namelist","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Next time you run your experiment the changed file will be used. You can also make changes in a running experiment. Make the change you wish and rerun the InitRun task from the viewer. The InitRun task copies all files from your local experiment directory to your working directory $HM_DATA. Once your InitRun task is complete your can rerun the task you are interested in. If you wish to recompile something you will also have to rerun the Build tasks.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Issues","page":"Running on Atos","title":"Issues","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Harmonie exp stop at ECMWF(Atos) due $PERM mounting problem https://github.com/Hirlam/Harmonie/issues/628","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Account","page":"Running on Atos","title":"Account","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"In order to change the billing account, open Env_submit and find the definition of scalar_job. Then add a line like","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"'ACCOUNT' => $submit_type.' --account=account_name' to the definition of the dictionary.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Directory-structure","page":"Running on Atos","title":"Directory structure","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#SCRATCH","page":"Running on Atos","title":"$SCRATCH","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"In $SCRATCH/hm_home/$EXP you will find ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Directory Content\nbin Binaries\nlib Source code synced from $HM_LIB and compiled code\nlib/src Object files and source code (if you build with makeup, set by MAKEUP_BUILD_DIR)\nlib/util Utilities such as makeup, gl_grib_api or oulan\nclimate Climate files\nYYYYMMDD_HH Working directory for the current cycle. If an experiment fails it is useful to check the IFS log file, NODE.001_01, in the working directory of the current cycle. The failed job will be in a directory called something like Failed_this_job.\narchive Archived files. A YYYY/MM/DD/HH structure for per cycle data. ICMSHHARM+NNNN and ICMSHHARM+NNNN.sfx are atmospheric and surfex forecast output files\nextract Verification input data. This is also stored on the permanent disk $HPCPERM/HARMONIE/archive/$EXP/parchive/archive/extract\nECF.log Log of job submission","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#ECFS","page":"Running on Atos","title":"ECFS","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Since $SCRATCH is cleaned regularly we need to store data permanently on ECFS, the EC file system, as well. There are two options for ECFS, ectmp and ec. The latter is a permanent storage and first one is cleaned after 90 days. Which one you use is defined by the`ECFSLOC variable. To view your data type e.g.\nels ectmp:/$USER/harmonie/my_exp\nThe level of archiving depends on ARSTRATEGY in ecf/config_exp.h. The default setting will give you one YYYY/MM/DD/HH structure per cycle data containing:\nSurface analysis, ICMSHANAL+0000[.sfx]\nAtmospheric analysis result MXMIN1999+0000\nBlending between surface/atmospheric analysis and cloud variable from the first guess LSMIXBCout\nICMSHHARM+NNNN and ICMSHHARM+NNNN.sfx are atmospheric and surfex forecast model state files\nPFHARM* files produced by the inline postprocessing\nICMSHSELE+NNNN.sfx are surfex files with selected output\nGRIB files for fullpos and surfex select files\nLogfiles in a tar file logfiles.tar\nObservation database and feedback information in odb_stuff.tar.\nExtracted files for obsmon in sqlite.tar\nClimate files are stored in the climate directory\nOne directory each for vfld and vobs data respectively for verification data","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#PERM","page":"Running on Atos","title":"$PERM","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Directory Content\nHARMONIE/$EXP ecflow log and job files\nhm_lib/$EXP/lib Scipts, config files, ecf and suite, source code (not compiled, set by $HM_LIB). Reference with experiment's changes on top","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#HPCPERM","page":"Running on Atos","title":"$HPCPERM","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"In $HPCPERM/hm_home/$EXP","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Directory Content\nparchive/archive/extract/ Verification input data.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#HOME-on-ecflow-gen-{user}-001","page":"Running on Atos","title":"$HOME on ecflow-gen-${user}-001","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Directory Content\necflow_server/ ecFlow checkpoint and log files","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Cleanup-of-old-experiments","page":"Running on Atos","title":"Cleanup of old experiments","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"danger: Danger\nThese commands may not work properly in all versions. Do not run the removal before you're sure it's OK","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Once you have complete your experiment you may wish to remove code, scripts and data from the disks. Harmonie provides some simple tools to do this. First check the content of the different disks by","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Harmonie CleanUp -ALL","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Once you have convinced yourself that this is OK you can proceed with the removal.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Harmonie CleanUp -ALL -go ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"If you would like to exclude the data stored on e.g ECFS ( at ECMWF ) or in more general terms stored under HM_EXP ( as defined in Env_system ) you run ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Harmonie CleanUp -d","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"to list the directories intended for cleaning. Again, convince yourself that this is OK and proceed with the cleaning by","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Harmonie CleanUp -d -go","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"You can always remove the data from ECFS directly by running e.g.","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"erm -R ec:/YOUR_USER/harmonie/EXPERIMENT_NAME ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"or","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"erm -R ectmp:/YOUR_USER/harmonie/EXPERIMENT_NAME ","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"For more information about cleaning with Harmonie read here\nFor more information about the ECFS commands read here","category":"page"},{"location":"System/ECMWF/RunningHarmonieOnAtos/#Debugging-Harmonie-with-ARM-DDT","page":"Running on Atos","title":"Debugging Harmonie with ARM DDT","text":"","category":"section"},{"location":"System/ECMWF/RunningHarmonieOnAtos/","page":"Running on Atos","title":"Running on Atos","text":"Follow instructions here. Use Run DDT client on your Personal Computer or End User Device ","category":"page"},{"location":"EPS/SLAF/Get_pertdia.pl.pm/#Get_pertdia","page":"Get_pertdia","title":"Get_pertdia","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Run-MUSC-with-EMS","page":"MUSC EMS","title":"Run MUSC with EMS","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"These instructions require the use of dev-CY46h1.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"If you find any issues with any of the instructions or scripts, feel free to notify Emily Gleeson (emily.gleesonATmet.ie) and Eoin Whelan (eoin.whelanATmet.ie)","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"In this section a description of how to install and run MUSC using EMS is provided. This is based on compilation and execution in a Ubuntu 20.04 container (tested using Apptainer on the ECMWF Atos HPC) and use of the EMS system to execute MUSC and convert the output to NetCDF. EMS is primarily developed by Romain Roehrig (Météo France) https://github.com/romainroehrig/EMS.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Start-your-container","page":"MUSC EMS","title":"Start your container","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Log in to hpc-login on the Atos\nLoad the Apptainer module and start the Ubuntu 20.04 container:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"module load apptainer\n/home/dui/musc_ubuntu.sif","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Further details concerning Apptainer on the Atos are available here","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Compile-the-code","page":"MUSC EMS","title":"Compile the code","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"I (Eoin) have not had time to sort out compilation using CMake but the following instructions provide a minimalist approach to compile the code using makeup. These instructions depend on you having a clone or copy of Harmonie (dev-46h1) in your $PERM directory on Atos where GHUSER is your Github username.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"cd $PERM\nGHUSER=your_github_username\ngit clone git@github.com:$GHUSER/Harmonie.git harmonie_git/$GHUSER/dev-CY46h1 -b dev-CY46h1\n\n(Ensure that your fork is up-to-date before doing this or else take the code from the main\nCY46 repo. Note that to run GABLS1 you need to use two updated surfex subroutines `tszo.F90`\nand `read_pgd_tsz0_parn.F90`. You can copy these files from util/musc/patches as follows:\n\ncp $PERM/harmonie_git/$GHUSER/dev-CY46h1/util/musc/patches/tsz0.F90 $PERM/harmonie_git/$GHUSER/dev-CY46h1/src/surfex/SURFEX/tsz0.F90\ncp $PERM/harmonie_git/$GHUSER/dev-CY46h1/util/musc/patches/read_pgd_tsz0_parn.F90 $PERM/harmonie_git/$GHUSER/dev-CY46h1/src/surfex/SURFEX/read_pgd_tsz0_parn.F90\nor by using git apply gabls.patch).\n","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Compile the code in your code checkout/copy:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"cd $PERM/harmonie_git/$GHUSER/dev-CY46h1\nEXP=$(basename $(git symbolic-ref --short HEAD))\n. config-sh/config.ubuntu20_nompi\nutil/makeup/build -n 4 config.${HARMONIE_CONFIG}\nmkdir ${EXP}\nmv makeup.${HARMONIE_CONFIG} bin configlog.1 makelog.1 ${EXP}/","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Install-EMS","page":"MUSC EMS","title":"Install EMS","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"The following instructions provide details on how to download a HIRLAM version of EMS and install locally in your own account:","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"cd $HOME\ngit clone git@github.com:ewhelan/EMS.git -b hirlam EMS_git/EMS\ncd EMS_git/EMS/\nmkdir build\ncd build/\nexport EMS_DIR=$HOME/metapp/ems\ncmake .. -DCMAKE_INSTALL_PREFIX=$EMS_DIR && make && ctest && make install\nexport PATH=${EMS_DIR}/bin:$PATH\nexport PYTHONPATH=${EMS_DIR}","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"note: Note\nFor GABLS1 in prep_nam_sfx.py_orig the following lines need to be commented out:nam[nn]['XUNIF_CLAY'] = ['1.']\nnam[nn]['XUNIF_SAND'] = ['0.']\nnam[nn]['XUNIF_RUNOFFB'] = ['0.5']\n\nnam[nn]['XHUG_SURF'] = ['-10.']\nnam[nn]['XHUG_ROOT'] = ['-10.']\nnam[nn]['XHUG_DEEP'] = ['-10.']\n","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Run-EMS","page":"MUSC EMS","title":"Run EMS","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Here are some instructions on how to use EMS to execute idealised cases","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"export EMS_DIR=$HOME/metapp/ems\nexport PATH=${EMS_DIR}/bin:$PATH\nexport PYTHONPATH=${EMS_DIR}\nmkdir $HOME/ems_exec\ncd $HOME/ems_exec\ncp ${EMS_DIR}/share/config/config_46h1_HARMAROME_DEV.py .\n### edit his file to point to your binaries\nems_list_cases.py\nexport PYTHONPATH=$(pwd):$PYTHONPATH\n# MUSC.py -config config_46h1_HARMAROME_DEV.py -case $CASE -subcase $SUBCASE\nMUSC.py -config config_46h1_HARMAROME_DEV.py -case ARMCU -subcase REF","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Output and log file can be found in $HOME/ems_exec/simulations/46t1/46h1_HARMAROME_DEV/${CASE}/${SUBCASE}","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#EMS-Cases","page":"MUSC EMS","title":"EMS Cases","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"The table below lists the cases available in EMS and results of early tests.","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Case Status Reference(s)\nGABLS1 REF ❌[1] \nGABLS1 MESONH ❌[1] \nGABLS4 STAGE3 ❌[1] \nGABLS4 STAGE3-SHORT ❌[1] \nAYOTTE 00SC ✔️ \nAYOTTE 00WC ✔️ \nAYOTTE 03SC ✔️ \nAYOTTE 05SC ✔️ \nAYOTTE 05WC ✔️ \nAYOTTE 24SC ✔️ \nIHOP REF ✔️ \nSCMS REF ✔️ \nRICO SHORT ✔️ \nRICO MESONH ✔️ \nARMCU REF ✔️ \nARMCU MESONH ✔️ \nARMCU E3SM ✔️ \nBOMEX REF ❌[2] \nMPACE REF ✔️ \nFIRE REF ✔️ \nSANDU REF ✔️ \nSANDU FAST ✔️ \nSANDU SLOW ✔️ \nAMMA REF ✔️ \nDYNAMO NSA3A ✔️ Takes a long time!\nDYNAMO NSA3A_D1 ✔️ \nDYNAMO NSA3A_D30 ❌[3] \nDYNAMO NSA3A_MJO1 ✔️ ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"[1]: Issue with SURFEX namelist","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"[2]: Python issue L241 $EMS_DIR/ems/prep_init_forc_atm_GMAP.py","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"[3]: Missing data_input.nc ","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/#Analysing-results-using-Atlas","page":"MUSC EMS","title":"Analysing results using Atlas","text":"","category":"section"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"Still in the Apptainer container","category":"page"},{"location":"ForecastModel/SingleColumnModel/MUSC_EMS/","page":"MUSC EMS","title":"MUSC EMS","text":"cd $HOME\ngit clone git@github.com:ewhelan/SCM-atlas.git -b hirlam SCM-atlas_git/ewhelan/hirlam\nexport PATH=$HOME/SCM-atlas_git/ewhelan/hirlam/apptools:$PATH\nexport PYTHONPATH=$HOME/SCM-atlas_git/ewhelan/hirlam:$PYTHONPATH\nexport ATLAS_CONFIG=\"\"\nmkdir -p $HOME/Atlas\ncd $HOME/Atlas\nmkdir config\ncp $HOME/SCM-atlas_git/ewhelan/hirlam/examples/config/config_HARM.py config/\n### edit config/config_HARM.py\nrun_atlas1d.py -config config/config_HARM.py","category":"page"},{"location":"Build/Build_with_makeup/#makeup","page":"Makeup","title":"Building with MAKEUP","text":"","category":"section"},{"location":"Build/Build_with_makeup/#Background","page":"Makeup","title":"Background","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Makeup is an alternative mechanism to build the HARMONIE system Instead of using GMKPACK to build the libraries and binaries, standard GNU make (gmake) procedures are used, making build of executables an easier task. Also parallel make comes for free, thus enhanced turn-around time for build process. Furthermore, rebuilds and change of compiler flags – either per project and/or per source files basis – are now trivial to do.","category":"page"},{"location":"Build/Build_with_makeup/#MAKEUP-very-quickly","page":"Makeup","title":"MAKEUP very quickly","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The process of using the MAKEUP system in stand-alone fashion is described next.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Lets define two helper variables for the presentation purposes:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The variable $HARMONIE_SRC refers to the directory, where the AROME source code is situated. Another variable $HARMONIE_MAKEUP refers to the directory, where build configuration files and MAKEUP's scripts are located. ","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"#!sh\n# In ksh/bash\nexport HARMONIE_SRC=/some/path/harmonie/src\nexport HARMONIE_MAKEUP=/some/path/harmonie/util/makeup\n# In csh/tcsh\nsetenv HARMONIE_SRC /some/path/harmonie/src\nsetenv HARMONIE_MAKEUP /some/path/harmonie/util/makeup","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Usually $HARMONIE_MAKEUP is $HARMONIE_SRC/../util/makeup , but it doesn't have to be (e.g. in FMI's production system the $HARMONIE_MAKEUP is situated on a separate disk than the source code $HARMONIE_SRC) – and MAKEUP can handle this now.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The process of building HARMONIE executable contains just a few steps:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Goto directory $HARMONIE_MAKEUP and create/edit your configuration file (config.*). Beware of preferred naming convention:\nconfig.....\nRun MAKEUP's configure script under $HARMONIE_SRC (for example):\ncd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\nIf applicable, adjust environment settings before launching of make. e.g., on some platforms, one needs to remember loading adequate modules, such as for DMI Cray XT5,\nmodule swap PrgEnv-pgi PrgEnv-pathscale # if pathscale is to be used\nmodule swap xt-mpt xt-mpt/3.5.0\nmodule swap xt-asyncpe/3.8 xt-asyncpe/3.4\nGoto $HARMONIE_SRC directory and type make (or gmake, if make is non-GNU make). Redirect output to a file & terminal:\ncd $HARMONIE_SRC\ngmake 2>&1 | tee logfile # ksh/bash\ngmake |& tee logfile # csh/tcsh","category":"page"},{"location":"Build/Build_with_makeup/#Using-MAKEUP-to-build-auxlibs-(bufr,-gribex,-rgb)","page":"Makeup","title":"Using MAKEUP to build auxlibs (bufr, gribex, rgb)","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"You can now build EMOS- and related libraries by using the MAKEUP. All you need to know is what is your sources. that you would use to build this stuff anyway. Pass that generic name to the MAKEUP's configure through -E option and you're in business. An example for FMI's Cray:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure -E sources.crayxt $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ngmake","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"This will create extra libs (so called MY_SYSLIBS) libbufr.a, libgribex.a and librgb.a and they will end up being linked into your executables, like MASTERODB.","category":"page"},{"location":"Build/Build_with_makeup/#Using-MAKEUP-to-build-also-util/gl-tools","page":"Makeup","title":"Using MAKEUP to build also util/gl -tools","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"HARMONIE utility package GL as located in util/gl directory can also be built as part of MAKEUP process, if option -G is also given to the configure:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure -G $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ngmake","category":"page"},{"location":"Build/Build_with_makeup/#Using-MAKEUP-to-build-also-Oulan-and/or-Monitor-tools","page":"Makeup","title":"Using MAKEUP to build also Oulan and/or Monitor -tools","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"HARMONIE utility package MONITOR and obs-preprocessor OULAN can also be build with MAKEUP. If you add option -B , then you will get Oulan and Monitor executables built, too. Or you can be more selective and oopt only for oulan with -b oulan, or just monitor -b monitor :","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n# Request for building both oulan & monitor, too\n$HARMONIE_MAKEUP/configure -B $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n# .. or add oulan only :\n$HARMONIE_MAKEUP/configure -b oulan $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n# .. or add monitor only :\n$HARMONIE_MAKEUP/configure -b monitor $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ngmake","category":"page"},{"location":"Build/Build_with_makeup/#Building-objects-away-from-HARMONIE_SRC-directory","page":"Makeup","title":"Building objects away from $HARMONIE_SRC-directory","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"If you do not want to pollute your source directories with objects and thus making it hard to recognize which files are under version handling system SVN and which ain't (... although SVN command svn -q st would tell ...), then use -P option. This will redirect compilations away from source code, under $HARMONIE_SRC/../makeup.ZZZ, where ZZZ is the suffix of your config-file, e.g. FMI.cray_xt5m.pathscale.mpi+openmp.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The operation sequence is as follows:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure [options] -P $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ncd $HARMONIE_SRC/../makeup.FMI.cray_xt5m.pathscale.mpi+openmp/src\ngmake","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The drawback with this approach is that whenever there is an update in the master source directories, you need to run lengthy configure in order to rsync the working directory up to date. We may need to introduce a separate command for this to avoid full rerun of configure.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"You can also use lowercase -p option with argument pointing to a directory-root, where to compile:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure [options] -p /working/path $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ncd /working/path/src\ngmake","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Now, it is important to understand that this /working/path has no connection to version handling i.e. if you change something in your master copy (say : issue a svn up-command), then your working directory remains unaltered. To synchronize it, do the following:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd /working/path/src\ngmake rsync","category":"page"},{"location":"Build/Build_with_makeup/#More-details","page":"Makeup","title":"More details","text":"","category":"section"},{"location":"Build/Build_with_makeup/#Re-running-configure","page":"Makeup","title":"Re-running configure","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Afterwards you can rerun configure as many times as you wish. Please note that the very first time is always slowed (maybe 10 minutes) as interface blocks for arp/ and ald/ projects are generated.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Usually running configure many times is not necessary – not even when you have changed your config-file (!) – except when interface blocks needs to be updated/re-created (-c or -g options). For example, when subroutine/function call argument list has changed. Then the whole config+build sequence can be run under $HARMONIE_SRC as follows:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n# -c option: Check if *some* interface blocks need regeneration and regenerate\n$HARMONIE_MAKEUP/configure -c $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n# -g option: Force to regenerate interface blocks \n# $HARMONIE_MAKEUP/configure -g $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\ngmake","category":"page"},{"location":"Build/Build_with_makeup/#Changing-the-number-of-tasks-for-compilation","page":"Makeup","title":"Changing the number of tasks for compilation","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The number of tasks used for gmake-compilations is set by default to 8. See NPES parameter in $HARMONIE_MAKEUP/defaults.mk To change the default, you can have two choices:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Add NPES to your config-file, for example set it to 2:\nNPES=2\nInvoke gmake with NPES parameter, e.g. set it to 10:\ngmake NPES=10","category":"page"},{"location":"Build/Build_with_makeup/#Inserting-DRHOOK-for-Meso-projects","page":"Makeup","title":"Inserting DRHOOK for Meso-projects","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"To insert DrHook profiling automatically for mpa/ and mse/ projects, reconfigure with -H option:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure -H $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"You can also pick and choose either mpa/ or mse/ projects with -h option (can be supplied several times):","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure -h mpa $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n$HARMONIE_MAKEUP/configure -h mse $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n# The following are the same as if the option -H was used\n$HARMONIE_MAKEUP/configure -h mpa -h mse -h surfex $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\n$HARMONIE_MAKEUP/configure -h mpa:mse:surfex $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"In the future it may not be necessary to insert DrHook automagically, if the insertion has been done in the svn (version handling) level.","category":"page"},{"location":"Build/Build_with_makeup/#Speeding-up-compilations-by-use-of-RAM-disk","page":"Makeup","title":"Speeding up compilations by use of RAM-disk","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"To further speedup compilation and if you have several GBytes of Linux RAM-disk (/dev/shm) available, do the following:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Create your personal RAM-disk subdirectory and check available disk space\nmkdir /dev/shm/$USER\ndf -kh /dev/shm/$USER\nReconfigure with RAM-disk either by defining LIBDISK in your config-file or running\ncd $HARMONIE_SRC\n$HARMONIE_MAKEUP/configure -L /dev/shm/$USER $HARMONIE_MAKEUP/config.FMI.cray_xt5m.pathscale.mpi+openmp\nAlso define TMPDIR to point to /dev/shm/$USER to allow compiler specific temporary files on RAM-disk\n# In ksh/bash-shells:\nexport TMPDIR=/dev/shm/$USER\ngmake 2>&1 | tee logfile\n# In csh/tcsh-shells:\nsetenv TMPDIR /dev/shm/$USER\ngmake |& tee logfile","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Please note that the step-2 creates all libraries AND executablus under the directory pointed by the -L argument. Object files and modules still, however, are placed under corresponding source directories.","category":"page"},{"location":"Build/Build_with_makeup/#What-if-you-run-out-of-RAM-disk-space-?","page":"Makeup","title":"What if you run out of RAM-disk space ?","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Sometimes you may find that the disk space becomes limited in /dev/shm/$USER. Then you have an option to supply LIBDISK parameter directly to gmake-command without need to reconfigure:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake LIBDISK=`pwd`","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"This usually increases the throughput time as creation of the AROME executable to disk rather than RAM-disk may be 5-10 times slower. But at least you won't run out of disk space.","category":"page"},{"location":"Build/Build_with_makeup/#How-is-ODB-related-stuff-handled-?","page":"Makeup","title":"How is ODB related stuff handled ?","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The Observational DataBase (ODB) is a complicated beast for good reasons. Unlike any other project, which produce just one library per project, correct use of ODB in variational data assimilation requires several libraries.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The trick to manage this with MAKEUP is to create a bunch of symbolic links pointing to $HARMONIE_SRC/odb/ -project directory. There will be one (additional) library for each link. And then we choose carefully the correct subdirectories and source codes therein to be compiled for each library.","category":"page"},{"location":"Build/Build_with_makeup/#Specific-ODB-libraries,-their-meaning-and-the-source-files-included","page":"Makeup","title":"Specific ODB-libraries, their meaning & the source files included","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Library Description Source files\nlibodb ODB core library lib/ & aux/ : [a-z]*.F90 [a-z]*.c\n module/ & pandor/module : *.F90\nlibodbport Interface between IFS (ARPEGE/ALADIN/AROME) & ODB cma2odb/ & bufr2odb/ : *.F90\n – also contains BUFR2ODB routines pandor/extrtovs & pandor/fcq & pandor/mandalay : *.F90\nlibodbdummy ODB-related dummies lib/ : [A-Z]*.F90 [A-Z]*.c\nlibodbmain ODB tools, main programs (C & Fortran) tools/ : [A-Z]*.F90 *.c *.F\nlibPREODB ERA40 database (not needed, but good for debugging) ddl.PREODB/*.sql , ddl.PREODB/*.ddl\nlibCCMA Compressed Central Memory Array database (minimization) ddl.CCMA/*.sql , ddl.CCMA/*.ddl\nlibECMA Extended Central Memory Array database (obs. screening) ddl.ECMA/*.sql , ddl.ECMA/*.ddl\nlibECMASCR Carbon copy of ECMA for obs. load balancing between PEs ddl.ECMASCR/*.sql , ddl.ECMASCR/*.ddl","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"From the file $HARMONIE_MAKEUP/configure you can also find how different files are nearly hand-picked for particular libraries. Search for block","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":" if [[ \"$d\" = @(odb|odbport|odbdummy|odbmain)]] ; then\n case \"$d\" in\n odb) case \"$i\" in\n lib|aux) files=$(\\ls -C1 [a-z]*.F90 [a-z]*.c 2>/dev/null) ;;\n module|pandor/module) files=$(\\ls -C1 *.F90 2>/dev/null) ;;\n esac ;;\n odbport) case \"$i\" in\n cma2odb|bufr2odb) files=$(\\ls -C1 *.F90 2>/dev/null) ;;\n pandor/extrtovs|pandor/fcq|pandor/mandalay) files=$(\\ls -C1 *.F90 2>/dev/null) ;;\n esac ;;\n odbdummy) [[ \"$i\" != \"lib\"]] || files=$(\\ls -C1 [A-Z]*.F90 [A-Z]*.c 2>/dev/null) ;;\n odbmain) [[ \"$i\" != \"tools\"]] || files=$(\\ls -C1 [A-Z]*.F90 *.c *.F 2>/dev/null) ;;\n esac\n elif [[ \"$d\" = @($case_odbs)]] ; then\n [[ \"$i\" != \"ddl.$d\"]] || {\n files=$(\\ls -C1 *.ddl *.sql 2>/dev/null)\n mkdepend=$CMDROOT/sfmakedepend_ODB\n }\n else\n ... ","category":"page"},{"location":"Build/Build_with_makeup/#Handling-SQL-query-and-data-layout-files","page":"Makeup","title":"Handling SQL-query and data layout files","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"For SQL-query compilations (ODB/SQL queries are translated into C-code for greater performance), odb98.x SQL-compiler executable is also built as a first thing in the MAKEUP process.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Queries and data definition layouts (DDL-files) are always under /ddl./ directory.","category":"page"},{"location":"Build/Build_with_makeup/#Miscellaneous-stuff","page":"Makeup","title":"Miscellaneous stuff","text":"","category":"section"},{"location":"Build/Build_with_makeup/#Selective-compilation","page":"Makeup","title":"Selective compilation","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"It is very easy to deviate from the generic compilation options for certain source files or even projects. If you want to change compiler option (say) from -O3 to -O2 for routine src/arp/pp_obs/pppmer.F90, you can add the following lines at the end of your config-file:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"pppmer.o: FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"If you want to apply this to all pppmer*.F90-routines, then you need to enter the following \"wildcard\"-sequence:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"pppme%.o: FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Note by the way that for some reason we need to use pppme%.o as the more natural (from Unix) pppmer%.o would choose only routines pppmertl.F90 and pppmerad.F90, not the routine pppmer.F90 at all!","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Applying different compiler flags for project (say) arp only, then one can put the following at the end of config-file:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"ifeq ($(PROJ),arp)\n%.o: FCFLAGS := $(subst -O3,-O2,$(FCFLAGS))\nendif","category":"page"},{"location":"Build/Build_with_makeup/#(Re-)building-just-one-project","page":"Makeup","title":"(Re-)building just one project","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Sometime you could opt for rebuilding only (say) the xrd-project i.e. libxrd.a. This can be done as follows:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake PROJ=xrd","category":"page"},{"location":"Build/Build_with_makeup/#Cleaning-up-files","page":"Makeup","title":"Cleaning up files","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"You can clean up by","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake clean","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"... or selectively just the project arp:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake PROJ=arp clean","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"This clean does not wipe out makefiles i.e. you don't have to rerun configure after this.","category":"page"},{"location":"Build/Build_with_makeup/#Restoring-and-cleaning-up-the-state-of-HARMONIE_SRC","page":"Makeup","title":"Restoring and cleaning up the state of $HARMONIE_SRC","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The following command you can run only once before issuing another configure command. It will remove all related object and executable files as well as generated makefiles, logfiles etc. stuff which was generated by MAKEUP's configure :","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"cd $HARMONIE_SRC\ngmake veryclean\n\n# .. or alternatively :\n$HARMONIE_MAKEUP/unconfigure","category":"page"},{"location":"Build/Build_with_makeup/#Ignoring-errors","page":"Makeup","title":"Ignoring errors","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"Sometimes it is useful to enforce compilations even if one or more routines fail to compile. In such cases recommended syntax is:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake -i\n\n# or not to mess up the output, use just one process for compilations\n\ngmake NPES=1 -i","category":"page"},{"location":"Build/Build_with_makeup/#Creating-precompiled-installation","page":"Makeup","title":"Creating precompiled installation","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"If you want to provide precompiled libraries, objects, source code to other users so that they do not have to start compilation from scratch, then make a distribution or precompiled installation as follows:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake PRECOMPILED=/a/precompiled/rootdir precompiled","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"After this the stuff you just compiled ends up in directory /a/precompiled/rootdir with two subdirectories : src/ and util/. All executables are currently removed.","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"You can repeat this call, and it will just rsync the modified bits.","category":"page"},{"location":"Build/Build_with_makeup/#Update/check-your-interface-blocks-outside-configure","page":"Makeup","title":"Update/check your interface blocks outside configure","text":"","category":"section"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"The configure has options -c or -g to check up or enforce for (re-)creation of interface blocks of projects arp and ald. To avoid full and lengthy configure-run, you can just do the following:","category":"page"},{"location":"Build/Build_with_makeup/","page":"Makeup","title":"Makeup","text":"gmake intfb","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/#Monitoring-Harmonie-suites-with-Teleport","page":"Teleport","title":"Monitoring Harmonie suites with Teleport","text":"","category":"section"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"In order to monitor the progress of your Harmonie suite(s) at ECMWF the ecFlow GUI ecflow_ui can be used directly from your local PC/server. This relies on teleport and ssh port forwarding which is described in more detail below. ","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/#Open-Teleport-connection","page":"Teleport","title":"Open Teleport connection","text":"","category":"section"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"This relies on a Teleport connection to ECMWF. Further details on Teleport are available here:","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"[itops@reaserve ~]$ tsh status\n> Profile URL: https://jump.ecmwf.int:443\n Logged in as: itops@met.ie\n Cluster: jump.ecmwf.int\n Roles: *\n Logins: duit\n Valid until: 2021-03-23 22:00:35 +0000 UTC [valid for 11h21m0s]\n Extensions: permit-X11-forwarding, permit-agent-forwarding, permit-port-forwarding, permit-pty\n\n\n* RBAC is only available in Teleport Enterprise\n https://gravitational.com/teleport/docs/enterprise\n[itops@reaserve ~]$ ","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"In order to open a new Teleport connection execute the following and submit credential via browser:","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"[ewhelan@reaserve ~]$ tsh login --proxy=jump.ecmwf.int:433","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/#Log-in","page":"Teleport","title":"Log in","text":"","category":"section"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"To log in to ECMWF's Atos:","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"[itops@reaserve ~]$ ssh -X hpc-login","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"The Teleport connection to ECMWF is configured as follows:","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"[ewhelan@reaserve ~]$ cat .ssh/config \nHost hpc-login\n User dui\n IdentityFile ~/.tsh/keys/jump.ecmwf.int/eoin.whelan@met.ie\n ProxyCommand bash -c \"tsh login; ssh -W %h:%p %r@jump.ecmwf.int\"\n[ewhelan@reaserve ~]$ ","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/#Open-ecFlow-ports","page":"Teleport","title":"Open ecFlow ports","text":"","category":"section"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"The following opens ports to ECMWF (dui, ECF_PORT=3141) ecFlow server. Based on instructions provided by [https://confluence.ecmwf.int/display/ECFLOW/Teleport+-+using+local+ecflow_ui]. In a new terminal:","category":"page"},{"location":"System/ECMWF/ECMWF_teleport/","page":"Teleport","title":"Teleport","text":"ssh hpc-login -C -N -L 3141:ecflow-gen-dui-001:3141","category":"page"},{"location":"DataAssimilation/ObservationOperators/#Observation-operators","page":"HOP_DRIVER","title":"Observation operators","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"This documentation summarises the observation operator in HARMONIE and the use of the HOP_DRIVER tool. The test harness, HOP_DRIVER, calls the observation operator and generates FG departures without calling any model code or initialising any model modules. Firstly, the IFS is used to dump a single-observation gom_plus to file from the 1st trajectory of an experiment. Dumping multiple observations would require a more complex and full-featured dump (good file format, multi-process parallel). For code refactoring HOP_DRIVER can be used to test changes to the observation operator of a particular observation type.","category":"page"},{"location":"DataAssimilation/ObservationOperators/#HARMONIE-and-HOP_DRIVER","page":"HOP_DRIVER","title":"HARMONIE and HOP_DRIVER","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"The HOP_DRIVER program was first added to CY42R2 code. The tool was initially implemented to test refactoring of the IFS observation operator code src/arpifs/op_obs/hop.F90. Instructions on how to prepare the code and run HOP_DRIVER using HARMONIE are outlined below. Presentation made at [wiki:HirlamMeetings/ModelMeetings/ObOpWorkshop OOPS Observation Operator Workshop] may provide some useful background information.","category":"page"},{"location":"DataAssimilation/ObservationOperators/#Comments-on-the-branch","page":"HOP_DRIVER","title":"Comments on the branch","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"Code changes were required in order to compile cy42r2bf.04 + mods (provided by MF/ECMWF) in the HARMONIE system: [14312], [14325], [14326], [14330], [14331], [14332], [14333], [14334].\nChanges were made to makeup in order to compile HOP_DRIVER correctly: [14310], [14327], [14328], [14329], [14335], [14362], [14382], [14392].\nIncluded in [14362] is a change to ODBSQLFLAGS which is set to ODBSQLFLAGS=-O3 -C -UCANARI -DECMWF $(ODBEXTRAFLAGS) in order to use ECMWF flavoured ODB used by HOP_DRIVER\nOn cca GNU compilers 4.9 are not fully supported, ie I had to build GRIB-API and NetCDF locally using gcc/gfortran 4.9 on cca\nAn environment variable, HOPDIR, is used to define the location of necessary input data for HOP_DRIVER\nAn environment variable, HOPCOMPILER, is used by the HOP_driver script to define the compiler used. This is used to compare results.","category":"page"},{"location":"DataAssimilation/ObservationOperators/#HOPOBS:-amsua","page":"HOP_DRIVER","title":"HOPOBS: amsua","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"Currently there is only one observation type, AMSU-A (HOPOBS=amsua), available for testing with HOP_DRIVER. Alan Geer (ECMWF) has already carried out the refactoring of the HOP code related to AMSU-A observations. A single observation is provided in the ECMA and is used to test the refactoring of the HOP code. To carry out the testing of the amsua refactoring HOPOBS should be set to amsua in ecf/config_exp.h.","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"reportype@hdr obstype@hdr sensor@hdr statid@hdr stalt@hdr date@hdr time@hdr degrees(lat) degrees(lon) report_status@hdr datum_status@body obsvalue@body varno@body vertco_type@body\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 12 173.28 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 12 158.86 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 3 227.40 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 3 260.82 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 256.90 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 239.60 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 12 NULL 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 3 217.69 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 209.39 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 214.05 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 223.02 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 234.42 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 245.14 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 1 257.18 119 3\n1007 7 3 ' 4' 832800 !20140131 215914 -29.5906 0.3113 1 12 227.91 119 3","category":"page"},{"location":"DataAssimilation/ObservationOperators/#HOP_DRIVER","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/#Using-HOP_DRIVER","page":"HOP_DRIVER","title":"Using HOP_DRIVER","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"With LHOP_RESULTS=.TRUE. HOP_DRIVER will write results to a file called hop_results${MYPROC} for comparison between online and offline results. (The results file is opened by src/arpifs/var/taskob.F90. HOP_DRIVER results are written to hop_results${MYPROC} in src/arpifs/op_obs/hop.F90:","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":" :\n :\nIF(LHOP_RESULTS) THEN\n!$OMP CRITICAL\n ! Output for comparison between online and offline results:\n WRITE(CFILENAME,'(\"hop_results\",I4.4)') MYPROC\n OPEN(NEWUNIT=IU,FILE=CFILENAME,POSITION='APPEND',ACTION='WRITE',FORM='FORMATTED')\n DO JOBS = 1,KDLEN\n DO JBODY=1,IMXBDY\n IF (JBODY>ICMBDY(JOBS)) CYCLE\n IBODY = ROBODY%MLNKH2B(JOBS)+(JBODY-1)\n WRITE(IU,'(6I8,2F30.14)') MYPROC, KSET, JOBS, NINT(ROBHDR%DATA(JOBS,ROBHDR%SEQNO_AT_HDR)),&\n & NINT(ROBODY%DATA(IBODY,ROBODY%VERTCO_REFERENCE_1_AT_BODY)), &\n & NINT(ROBODY%DATA(IBODY,ROBODY%VARNO_AT_BODY)), ZHOFX(JOBS,JBODY), ZXPPB(JOBS,JBODY)\n\n ENDDO\n ENDDO\n CLOSE(IU)\n!$OMP END CRITICAL\nENDIF\n :\n :","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"The HOPdriver script (based a script provided by MF) sorts the contents of the `hopresults0001` file for comparison with some results made available by ECMWF/MF:","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":" :\n :\n#\n# Check HOP_DRIVER results (available for gfotran and intel)\n#\nln -s $HOPDIR/${HOPOBS}/results.$HOPCOMPILER .\ncat hop_results* | sort -k1,1n -k2,2n -k3,3n -k5,5n -k6,6n > results.driver\necho\ncmp -s results.$HOPCOMPILER results.driver\nif [ $? -eq 0] ; then\n echo \"RESULTS ARE STRICTLY IDENTICAL TO THE REFERENCE FOR HOPCOMPILER=$HOPCOMPILER :-)\"\nelse\n echo Compare exactly against the results dumped from hop:\n echo \"xxdiff results.$HOPCOMPILER results.driver &\"\n diff results.$HOPCOMPILER results.driver\n exit 1\nfi\n :\n :","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"On cca you will find useful output from HOP_DRIVER in cca:$TEMP/hm_home/rfexp/archive/HOPDRIVEROUT:","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"fort.4\nNODE.001_01\nhop_results0001\nresults.gfortran\nresults.driver","category":"page"},{"location":"DataAssimilation/ObservationOperators/#The-code","page":"HOP_DRIVER","title":"The code","text":"","category":"section"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"HOP_DRIVER is a short program written by Deborah Salmond (ECMWF) to test code changes made to the observation operator. The program src/arpifs/programs/hop_driver.F90 is summarised here.","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"The program sets up the model geometry and observations:","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":" :\n :\nCALL GEOMETRY_SET(YRGEOMETRY)\nCALL MODEL_SET(YRMODEL)\n\nCALL IFS_INIT('gc7a')\n\nCALL SUINTDYN\n\nCALL SUGEOMETRY(YRGEOMETRY) !From GEOMETRY_SETUP\n\nCALL SURIP(YRGEOMETRY%YRDIM) !From MODEL_CREATE\n\n! Set up Observations, Sets\nCALL SUDIMO(YRGEOMETRY,NULOUT) !From SU0YOMB\nCALL SUOAF !From SU0YOMB\nCALL SUALOBS !From SU0YOMB\nCALL SURINC !From SU0YOMB\nCALL SETUP_TESTVAR !From SU0YOMB\nCALL SUOBS(YRGEOMETRY) !From CNT1\nCALL ECSET(-1,NOBTOT,0) !From OBSV\nCALL SUPHEC(YRGEOMETRY,NULOUT)\n\n! Setup varbc (from cnt1.F90) and read VARBC.cycle\nCALL YVARBC%SETUP_TRAJ\n :\n :","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":"HOP_DRIVER then loops over the number of observation sets (NSETOT) and reads a GOM PLUS for each observation set. HRETR and HOP are then called:","category":"page"},{"location":"DataAssimilation/ObservationOperators/","page":"HOP_DRIVER","title":"HOP_DRIVER","text":" :\n :\nDO ISET=1,NSETOT\n IDLEN = MLNSET(ISET)\n IMXBDY = MAX(MMXBDY(ISET),1)\n\n ALLOCATE(ZHOFX(IDLEN,IMXBDY))\n ZHOFX=RMDI\n\n ! READ GOM_PLUS FROM DUMP\n CALL GOM_PLUS_READ_DUMP(YGP5,ISET)\n\n IF(IDLEN /= YGP5%NDLEN) THEN\n CALL ABOR1('Sets are incompatible')\n ENDIF\n\n :\n :\n :\n\n CALL HRETR(YRGEOMETRY%YRDIMV,IDLEN,IMXBDY,ISET,1,YGP5,YVARBC)\n\n CALL HOP(YRGEOMETRY%YRDIMV,YGP5,YVARBC,IDLEN,IMXBDY,ISET,1,LDOOPS=.TRUE.,PHOFX=ZHOFX)\n\n !write(0,*)'ZHOFX',ZHOFX\n DEALLOCATE(ZHOFX)\n\n CALL GOM_PLUS_DESTROY(YGP5)\n\nENDDO\n\n :\n :","category":"page"},{"location":"EPS/Setup/#eps-setup","page":"Setup","title":"Setup","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/#boundary-file-preparation","page":"Preparation","title":"Preparation of initial and boundary files","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/#Introduction","page":"Preparation","title":"Introduction","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"HARMONIE can be coupled with external models as IFS, ARPEGE, HIRLAM. Internally it is possible to nest the different ALADIN/ALARO/AROME with some restrictions. In the following we describe the host initial and boundary files are generated depending on different configurations. Boundary file preparation basically includes two parts: forecast file fetching and boundary file generation.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The ECFLOW tasks for initial and boundary preparation","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Boundary-strategies","page":"Preparation","title":"Boundary strategies","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"There are a number of ways to chose which forecast lengths you use as boundaries. The strategy is determined by BDSTRATEGY in ecf/config_exp.h and there are a number of strategies implemented.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"available : Search for available files in BDDIR adn try to keep forecast consistency. This is ment to be used operationally since it will at least keep your run going, but with old boundaries, if no new boundaries are available.\nsimulate_operational : Mimic the behaviour of the operational runs using ECMWF 6h old boundaries.\nsame_forecast : Use all boundaries from the same forecast, start from analysis\nanalysis_only : Use only analyses as boundaries. Note that BDINT cannot be shorter than the frequency of the analyses.\nlatest : Use the latest possible boundary with the shortest forecast length\nRCR_operational : Mimic the behaviour of the RCR runs, ie\n12h old boundaries at 00 and 12 and\n06h old boundaries at 06 and 18\njb_ensemble : Same as same_forecast but used for JB-statistics generation. With this you should export JB_ENS_MEMBER=some_number\neps_ec : ECMWF EPS members (on reduced Gaussian grid). It is only meaningful with ENSMSEL non-empty, i.e., ENSSIZE > 0","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"All the strategies are defined in scr/Boundary_strategy.pl. The script generates a file bdstrategy in your working directory that could look like:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":" Boundary strategy\n\n DTG: 2011090618\n LL: 36\n BDINT: 3\n BDCYCLE: 6\n STRATEGY: simulate_operational\n BDDIR: /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/@YYYY@/@MM@/@DD@/@HH@\nHOST_MODEL: ifs\nINT_BDFILE: /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC@NNN@\n\n# The output bdstrategy file has the format of \n# NNN|YYYYMMDDHH INT_BDFILE BDFILE BDFILE_REQUEST_METHOD \n# where \n# NNN is the input hour\n# YYYYMMDDHH is the valid hour for this boundary\n# INT_BDFILE is the final boundary file\n# BDFILE is the input boundary file\n# BDFILE_REQUEST_METHOD is the method to the request BDFILE from e.g. MARS, ECFS or via scp\n\nSURFEX_INI| /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/SURFXINI.lfi \n000|2011090618 /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC000 /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/2011/09/06/12/fc20110906_12+006 MARS_umbrella -d 20110906 -h 12 -l 6 -t\n003|2011090621 /scratch/snh/hm_home/alaro_37h1_trunk/20110906_18/ELSCFHARMALBC001 /scratch/snh/hm_home/alaro_37h1_trunk/ECMWF/archive/2011/09/06/12/fc20110906_12+009 MARS_umbrella -d 20110906 -h 12 -l 9 -t\n...","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Meaning that the if the boundary file is not found under BDDIR the command MARS_umbrella -d YYYYMMDD -h HH -l LLL -t BDDIR will be executed. A local interpretation could be to search for external data if your file is not on BDDIR. Like the example from SMHI:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":" Boundary strategy\n\n DTG: 2011090112\n LL: 24\n BDINT: 3\n BDCYCLE: 06\n STRATEGY: latest\n BDDIR: /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/@YYYY@/@MM@/@DD@/@HH@\nHOST_MODEL: hir\nINT_BDFILE: /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC@NNN@\n EXT_BDDIR: smhi_file:/data/arkiv/field/f_archive/hirlam/G05_60lev/@YYYY@@MM@/G05_@YYYY@@MM@@DD@@HH@00+@LLL@H00M\nEXT_ACCESS: scp\n\n# The output bdstrategy file has the format of \n# NNN|YYYYMMDDHH INT_BDFILE BDFILE BDFILE_REQUEST_METHOD \n# where \n# NNN is the input hour\n# YYYYMMDDHH is the valid hour for this boundary\n# INT_BDFILE is the final boundary file\n# BDFILE is the input boundary file\n# BDFILE_REQUEST_METHOD is the method to the request BDFILE from e.g. MARS, ECFS or via scp\n\n# hh_offset is 0 ; DTG is \nSURFEX_INI| /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/SURFXINI.lfi \n000|2011090112 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC000 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/2011/09/01/12/fc20110901_12+000 scp smhi:/data/arkiv/field/f_archive/hirlam/G05_60lev/201109/G05_201109011200+000H00M \n003|2011090115 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/20110901_12/ELSCFHARMALBC001 /nobackup/smhid9/sm_esbol/hm_home/ice_36h1_4/g05a/archive/2011/09/01/12/fc20110901_12+003 scp smhi:/data/arkiv/field/f_archive/hirlam/G05_60lev/201109/G05_201109011200+003H00M ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"In this example an scp from smhi will be executed if the expected file is not in BDDIR. There are a few environment variables that one can play with in sms/confi_exp.h that deals with the initial and boundary files","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"HOST_MODEL : Tells the origin of your boundary data * ifs : ecmwf data * hir : hirlam data * ald : Output from aladin physics, this also covers arpege data after fullpos processing. * ala : Output from alaro physics * aro : Output from arome physics\nBDINT : Interval of boundaries in hours\nBDLIB : Name of the forcing experiment. Set\nECMWF to use MARS data\nRCRa to use RCRa data from ECFS\nOther HARMONIE/HIRLAM experiment\nBDDIR : The path to the boundary file. In the default location BDDIR=$HM_DATA/${BDLIB}/archive/@YYYY@/@MM@/@DD@/@HH@ the file retrieved from e.g. MARS will be stored in a separate directory. On could also consider to configure this so that all the retrieved files are located in your working directory $WRK. Locally this points to the directory where you have all your common boundary HIRLAM or ECMWF files.\nINT_BDFILE : is the full path of the interpolated boundary files. The default setting is to let the boundary file be removed by directing it to $WRK.\nINT_SINI_FILE : The full path of the initial surfex file. ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"There are a few optional environment variables that could be used that are not visible in config_exp.h ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"EXT_BDDIR : External location of boundary data. If not set rules are depending on HOST_MODEL\nEXT_ACCESS : Method for accessing external data. If not set rules are depending on HOST_MODEL\nBDCYCLE : Assimilation cycle interval of forcing data, default is 6h.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"More about this can be bounds in the Boundary_strategy.pl script.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The bdstrategy file is parsed by the script ExtractBD. ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"scr/ExtractBD Checks if data are on BDDIR otherwise copy from EXT_BDDIR. The operation performed can be different depending on HOST and HOST_MODEL. IFS data at ECMWF are extracted from MARS, RCR data are copied from ECFS.\nInput parameters: Forecast hour\nExecutables: none.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"In case data should be retrieved from MARS there is also a stage step. When calling MARS with the stage command we ask MARS to make sure data are on disk. In HARMONIE we ask for all data for one day of r forecasts ( normally four cycles ) at the time. ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Near-real-time-aerosols","page":"Preparation","title":"Near real time aerosols","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The use of near real time aerosols require the presence of aerosol fields in the boundary files.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"BDAERO : Origin of the aerosol fields\nnone : no aerosols (default configuration)\ncams : aerosol from CAMS.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"A bdstrategy_cams file is generated. After the data is retrieved, the files are merge with the files from the HOST_MODEL to get the final boundary conditions files.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Initial-and-Boundary-file-generation","page":"Preparation","title":"Initial and Boundary file generation","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"To be able to start the model we need the variables defining the model state.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"T,U,V,PS in spectral space\nQ in gridpoint or spectral space","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Optional:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Q_l, Q_i, Q_r, Q_g, Q_s, Q_h\nTKE","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"For the surface we need the different state variables for the different tiles. The scheme selected determines the variables.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Boundary files (coupling files) for HARMONIE are prepared in two different ways depending on the nesting procedure defined by HOST_MODEL.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Using-gl","page":"Preparation","title":"Using gl","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"If you use data from HIRLAM or ECMWF gl will be called to generate boundaries. The generation can be summarized in the following steps:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Setup geometry and what kind of fields to read depending on HOST_MODEL\nRead the necessary climate data from a climate file\nTranslate and interpolate the surface variables horizontally if the file is to be used as an initial file. All interpolation respects land sea mask properties. The soil water is not interpolated directly but interpolated using the Soil Wetness Index to preserve the properties of the soil between different models. The treatment of the surface fields is only done for the initial file.\nHorizontal interpolation of upper air fields as well as restaggering of winds.\nVertical interpolation using the same method (etaeta) as in HIRLAM\nConserve boundary layer structure\nConserve integrated quantities\nOutput to an FA file ( partly in spectral space )","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"gl is called by the script scr/gl_bd where we make different choices depending on PHYSICS and HOST_MODEL","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"When starting a forecast there are options to whether e.g. cloud properties and TKE should be read from the initial/boundary file through NREQIN and NCOUPLING. At the moment these fields are read from the initial file but not coupled to. gl reads them if they are available in the input files and sets them to zero otherwise. For a Non-Hydrostatic run the non-hydrostatic pressure departure and the vertical divergence are demanded as an initial field. The pressure departure is by definition zero if you start from a non-hydrostatic mode and since the error done when disregarding the vertical divergence is small it is also set to zero in gl. There are also a choice in the forecast model to run with Q in gridpoint or in spectral space.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"It's possible to use an input file without e.g. the uppermost levels. By setting LDEMAND_ALL_LEVELS=.FALSE. the missing levels will be ignored. This is used at some institutes to reduce the amount of data transferred for the operational runs. ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Using-fullpos","page":"Preparation","title":"Using fullpos","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"If you use data generated by HARMONIE you will use fullpos to generate boundaries and initial conditions. Here we will describe how it's implemented in HARMONIE but there are also good documentation on the gmapdoc site.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"fullpos","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"In HARMONIE it is done by the script scr/E927. It contains the following steps:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Fetcht climate files. Fullpos needs a climate file and the geometry definition for both the input and output domains. \nSet different moist variables in the namelists depending if your run AROME or ALADIN/ALARO.\nCheck if input data has Q in gridpoint or spectral space.\nDemand NH variables if we run NH.\nDetermine the number of levels in the input file and extract the correct levels from the definition in scr/Vertical_level.pl\nRun fullpos","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"E927 is also called from 4DVAR when the resolution is changed between the inner and outer loops.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Generation-of-initial-data-for-SURFEX","page":"Preparation","title":"Generation of initial data for SURFEX","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"For SURFEX we have to fill the different tiles with correct information from the input data. This is called the PREP step in the SURFEX context. scr/Prep_ini_surfex creates an initial SURFEX file from an FA file if you run with SURFACE=surfex. ","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Read more about SURFEX","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Reading-SST/SIC-information","page":"Preparation","title":"Reading SST/SIC information","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"It is possible to update sea-surface temperature (SST) and sea-ice concentration (SIC) from the LBC/coupling files. Since June 2018 and Cycle 45r1, ECMWF's IFS has used interactive ocean and sea ice components. It has been shown that use of these components \"... can significantly improve SST predictions in Europe, and as a result, predictions of near-surface air temperature\". The use of SST and SIC as surface boundary conditions has the potential to improve the quality of LAM NWP forecasts. See the ECMWF Newsletter article https://www.ecmwf.int/en/newsletter/156/news/effects-ocean-coupling-weather-forecasts describing examples of the coupling improved IFS forecasts in the seas near Europe.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The reading of these data is controlled by the SSTSIC_UPD switch in ecf/config_exp.h. With SSTSIC_UPD=no (default) SST/SIC are read at analysis time and not updated during the forecast. With SSTSIC_UPD=yes SST and SIC are read by the model from files created by the Interpol_sst_mll task in the Boundaries ecFlow family.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#Data-preparation","page":"Preparation","title":"Data preparation","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The ecf/Interpol_sst_mll.ecf task reads the bdstrategy file described above and calls the scr/Interpol_sst_mll script to \"Interpolate SST/SIC from various sources to the model geometry for given MLL & INFILE\". The script uses gl (with -sst3 option set) to carry out the interpolation.","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"Interpol_sst_mll input Description\n-h Commnand-line option. Model forecast hour\n-i Commnand-line option. Input file name\nSST_SOURCES Environment variable. External SST source used to set gl namelist\nEXT_SST_SIC_$LLL Hard-coded. Output filename expected by the code (LLL is the forecast length).","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/#The-code","page":"Preparation","title":"The code","text":"","category":"section"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"The reading of the SST/SIC input files (EXT_SST_SIC_$LLL) is controlled in the scripts by the SSTSIC_UPD environment variable. With it set to yes, the following NAMMCC namelist entries are set to .TRUE.:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"&NAMMCC\n LMCC01_MSE=.TRUE.,\n LMCCECSST=.TRUE.,\n/","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"From src/arpifs/module/yommcc.F90:","category":"page"},{"location":"Boundaries/BoundaryFilePreparation/","page":"Preparation","title":"Preparation","text":"! LMCC01_MSE = .T. ===> THE CLIM.FIELD(S) ARE READ IN LBC FILE AND USED IN SURFEX\n :\n! LMCCECSST =.T. ===> SST FROM ECMWF (SST-ANA COMB with surf temp over seaice)\n! =.F. ===> SST FROM SURFTEMPERATURE","category":"page"},{"location":"ClimateGeneration/DownloadInputData/#download-input-data","page":"Input Data","title":"Download input data","text":"","category":"section"},{"location":"ClimateGeneration/DownloadInputData/","page":"Input Data","title":"Input Data","text":"Before you can start running HARMONIE experiments some input data (external from the code repository) needs to be available on your platform. The input data contains physiography data, topography information and climatological values determined from a one year ARPEGE assimilation experiment with a resolution of T79.","category":"page"},{"location":"ClimateGeneration/DownloadInputData/","page":"Input Data","title":"Input Data","text":" E923_DATA-harmonie-43h2.1.tar.gz: Climate and physiography data for atmospheric climate generation (E923)\n PGD-harmonie-43h2.1.tar.gz: Physiography data for SURFEX (PGD)\nGMTED2010-harmonie-43h2.1.tar.gz : Digital elevation model from UGS\n SOILGRID-harmonie-43h2.1.tar.gz: Soil type data from SOILGRIDS\n sat-harmonie-43h2.1.tar.gz: Constants for satellite information\nrttov7L54-harmonie-43h2.1.tar.gz : RTTOV constants\nECOCLIMAP second generation is available from here. It's also available on hpc-login:/ec/res4/hpcperm/hlam/data/climate/ECOCLIMAP2G\ntestbed-harmonie-43h2.1.tar.gz: Test data set with boundaries and observations for a small 50x50 domain]","category":"page"},{"location":"EPS/SPP/#spp","page":"SPP","title":"SPP in HarmonEPS","text":"","category":"section"},{"location":"EPS/SPP/#SPP-options-in-HARMONIE","page":"SPP","title":"SPP options in HARMONIE","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The Stochastically Perturbed Parameterizations scheme (SPP) introduces stochastic perturbations to values of chosen closure parameters representing efficiencies or rates of change in parameterized atmospheric (sub)processes. See here for more information. SPP is available since cy40h1.1.1.","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP is activated by setting SPP=yes in ecf/config_exp.h","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP uses the Stochastic Pattern Generator (SPG). The pattern characteristics are set by the following settings in config_exp.h:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":" SDEV_SPP = 1.0 # Standard deviation of the pattern\n TAU_SPP = 43200 # Time scale (seconds)\n XLCOR_SPP = 200000 # Length scale (m)\n SPGQ_SPP = 0.5 # Controls small vs. large scales \n SPGADTMIN_SPP=0.15 # initialization to ensure stationary statistics from the start of the integration\n SPGADTMAX_SPP=3.0 # initialization to ensure stationary statistics from the start of the integration\n NPATFR_SPP=-1 # Frequency to evolve pattern: >0 in timesteps, <0 in hours","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The parameters that can be perturbed are: ","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Perturbation Description Perturbs\nP1: LPERT_PSIGQSAT Perturb saturation limit sensitivity VSIGQSAT\nP3: LPERT_CLDDPTHDP Perturb threshold cloud thickness used in shallow/deep convection decision RFRMIN(20)\nP4: LPERT_ICE_CLD_WGT Perturb cloud ice content impact on cloud thickness RFRMIN(21)\nP5: LPERT_ICENU Perturb ice nuclei RFRMIN(9)\nP6: LPERT_KGN_ACON Perturb Kogan autoconversion speed RFRMIN(10)\nP7: LPERT_KGN_SBGR Perturb Kogan subgrid scale (cloud fraction) sensitivity RFRMIN(11)\nP8: LPERT_RADGR Perturb graupel impact on radiation RADGR\nP9: LPERT_RADSN Perturb snow impact on radiation RADSN\nP10:LPERT_RFAC_TWOC Perturb top entrainment RFAC_TWO_COEF\nP11:LPERT_RZC_H Perturb stable conditions length scale RZC_H\nP12:LPERT_RZL_INF Asymptotic free atmospheric length scale RZL_INF\nP13:LPERT_RSWINHF Short wave inhomogeneity factor RSWINHF\nP14:LPERT_RLWINHF Long wave inhomogeneity factor RLWINHF\nP15:LPERT_ALPHA Cloud droplet gamma distribution parameters alpha (over sea) ALPHA\nP16:LPERT_RZNUC Cloud droplet gamma distribution parameters nu (over land) RZNUC\nP17:LPERT_RZMFDRY Parameter for dry mass flux RZMFDRY\nP18:LPERT_RZMBCLOSURE Closure parameter for moist mass flux RZMBCLOSURE\nP19:LPERT_SLWIND Perturbing V(M) in the semi-lagrangian advection scheme SLWIND","category":"page"},{"location":"EPS/SPP/#Main-settings","page":"SPP","title":"Main settings","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The following describes the namelist flags for SPP. Namelist flags for SPP are found in the namelist NAMSPP in nam/harmonie_namelists.pm","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Activate perturbation of a parameter by setting LPERT_[PARAMETER] to TRUE in harmonie_namelists.pm, e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":" NAMSPP=>{\n 'LPERT_PSIGQSAT' => '.TRUE.,',\n ...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The size of the perturbation (the standard deviation of the parameter distribution) is set by CMPERT_[PARAMETER], e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":" NAMSPP=>{\n 'CMPERT_PSIGQSAT' => '0.3,',\n ...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The min/max range of each perturbed parameter can be controlled by the CLIP_[PARAMETER] namelist variable where the limits are specified as e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP=>{\n'CLIP_PSIGQSAT' => '0.0,0.1',\n...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Two distributions for the parameter values are possible: lognormal and pseudo uniform. Note: when a pseudo uniform distribution is used, the distribution may extend to negative values, which should be avoided. This can be assured by setting a clipping range (see above). Set LUNIFORM_[PARAMETER] to FALSE to use lognormal and to TRUE to use pseudo uniform, e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP =>{\n'LUNIFORM_PSIGQSAT' => '.FALSE.,',\n...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"When pseudo uniform is chosen, it is possible to shift the distribution by setting UNIFORM_OFFSET_[PARAMETER], where offset 0.5 is default, <0.5 moves the distribution to the right and >0.5 moves the distribution to the left e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP =>{\n'UNIFORM_OFFSET_PSIGQSAT' => '0.45,',\n...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"When lognormal distribution is chosen, the flag LLNN_MEAN1_[PARAMETER] decides if the mean or the median of the distribution corresponds to the unperturbed, deterministic value of the parameter. Set to FALSE to use the median and to TRUE to use the mean, e.g.:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP =>{\n'LLNN_MEAN1_PSIGQSAT' => '.TRUE.,',\n...\n },","category":"page"},{"location":"EPS/SPP/#Correlation-of-patterns","page":"SPP","title":"Correlation of patterns","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Any arbitrary number of parameters can be correlated by setting MP_X, where X is the name of the parameter, to the same number in in NAMSPP. Anticorrelation can be achieved by setting IC_X=-1. I.e. if we set","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP =>{\n...\n 'MP_RZC_H' => '77,',\n 'MP_RZL_INF' => '77,',\n 'MP_KGN_ACON' => '99',\n 'MP_KGN_SBGR' => '99,',\n 'IC_KGN_SBGR' => '-1,',\n...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"we will correlate RZC_H and RZL_INF and anticorrelate KGN_ACON with KGN_SBGR. The latter is achieved by setting IC_KGN_SBGR=-1. Note that the number for MP_X is used as an ID and should not be considered as a sequence number. It does not control the order of the patterns in the output or similar.","category":"page"},{"location":"EPS/SPP/#Define-the-time-and-length-scales-for-an-individual-pattern","page":"SPP","title":"Define the time and length scales for an individual pattern","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The pattern timescale TAU and lengthscale XLCOR are defined in NAMSPP and are then valid for all patterns. To specify the patterns individually we can set something like:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"NAMSPP =>{\n...\n 'YSPP_CONFIG_PAR(1)%TAG' => '\\'PSIGQSAT\\'',\n 'YSPP_CONFIG_PAR(1)%TAU' => '21600',\n 'YSPP_CONFIG_PAR(1)%XLCOR' => '150000',\n 'YSPP_CONFIG_PAR(2)%TAG' => '\\'KGN_ACON\\'',\n 'YSPP_CONFIG_PAR(2)%TAU' => '10800',\n 'YSPP_CONFIG_PAR(2)%XLCOR' => '350000',\n...\n },","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"where TAG is the name of the parameter to be perturbed. ","category":"page"},{"location":"EPS/SPP/#Recommended-SPP-settings-(cy43):","page":"SPP","title":"Recommended SPP settings (cy43):","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"CMPERT needs to be tuned for each parameter. CMPERT1 in the table below is the value that gives the range of values for the parameters recommended by the physics experts (when a lognormal distribution is used, if not stated otherwise). CMPERT is the value recommended for use. Tuning is ongoing, hence not all recommendations are in place yet. The well tested settings are in bold, preliminary suggestions are in italic.","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Perturbation Det. value Recom. range CMPERT (CMPERT1) Distribution Offset Mean Median Clipping Corr.\nPSIGQSAT 0.02 0-0.06 0.6 (0.3) Log-normal N.A. Mean No N.A.\nCLDDPTHDP 4000 0-10000 0.6 (0.3) Log-normal N.A. Mean No N.A.\nICE_CLD_WGT 1 0.2-2 1.2 (0.3) Uniform 0.5 N.A. 0.01 - 10 N.A.\nICENU 1 0.01-100 TBD (1.05) TBD TBD TBD TBD N.A.\nKGN_ACON 10 1-100 TBD (0.75) TBD TBD TBD TBD N.A.\nKGN_SBGR 1[1] 0.01-1 TBD (0.3) TBD TBD TBD 0., 1. N.A.\nRADGR 0.5 0-1 TBD (0.4) TBD TBD TBD 0., 2. N.A.\nRADSN 1 0-2 TBD (0.35) TBD TBD TBD 0., 2. N.A.\nRFAC_TWOC 2 0.5-3 TBD (0.3) TBD TBD TBD TBD N.A.\nRZC_H 0.11 0.1-0.2 1.05 (0.3) Uniform 0.475 N.A. 0.001, 100 Yes\nRZL_INF 40 20-200 0.45 (0.45) Log-normal N.A. Mean No Yes\nLPERT_RSWINHF 1? 0.95-1 Not tested \nLPERT_RLWINHF 1? 0.95-1 Not tested \nLPERT_ALPHA 3 0.2-5 1.4 (0.3) Uniform 0.5 N.A. TBD N.A.\nLPERT_RZNUC 3 0.2-10 0.6 (0.3) Log-normal N.A. Mean No N.A.\nLPERT_RZMFDRY 1 0.2-2 0.8 (0.3) Log-normal N.A. Mean No N.A.\nLPERT_RZMBCLOSURE 0.35 0.05-0.7 0.8 (0.3) Log-normal N.A. Mean No N.A.","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"[1]: Default/deterministic value of 1 and recommended range of 0.01-1 means the deterministic value is at the high end of the distribution. ","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"For more SPP details see src/arpifs/module/spp_mod.F90","category":"page"},{"location":"EPS/SPP/#Tendency-and-pattern-diagnostics","page":"SPP","title":"Tendency and pattern diagnostics","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Diagnostic output of tendencies and SPP patterns can be activated by setting TEND_DIAG=yes in ecf/config_exp.h. Activation gives six new 3D-fields","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"FANAME Description\nSNNNPTENDU U-component tendencies\nSNNNPTENDV V-component tendencies\nSNNNPTENDT Temperature tendencies\nSNNNPTENDR Moisture tendencies\nSNNNMULNOISE SPPT pattern, same for all levels\nSNNNSPP_PATTERN SPP pattern, distribution as explained below","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The raw and scaled patterns are stored in the vertical column of SNNNSPP_PATTERN using the index given for Diagnostic number in the SPP initialization. Thus, with the standard settings and the correlated pattern exampel above we get in the standard log file NODE.001_01 available in the Forecast task output :","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"...\nPSIGQSAT pattern/diagnostic numbers are: 1 1\nCLDDPTHDP pattern/diagnostic numbers are: 2 2\nICE_CLD_WGT pattern/diagnostic numbers are: 3 3\nICENU pattern/diagnostic numbers are: 4 4\nKGN_ACON pattern/diagnostic numbers are: 5 5\nKGN_SBGR pattern/diagnostic numbers are: 5 6\nRADGR pattern/diagnostic numbers are: 6 7\nRADSN pattern/diagnostic numbers are: 7 8\nRFAC pattern/diagnostic numbers are: 8 9\nRZC_H pattern/diagnostic numbers are: 9 10\nRZCL_INF pattern/diagnostic numbers are: 9 11\n...","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The raw pattern is stored as 2N-1 and the scaled one as 2N where N is the Diagnostic number given in the log file. This gives us the following table:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Perturbation raw pattern scaled pattern\nPSIGQSAT S001SPP_PATTERN S002SPP_PATTERN\nCLDDPTHDP S003SPP_PATTERN S004SPP_PATTERN\nICE_CLD_WGT S005SPP_PATTERN S006SPP_PATTERN\nICENU S007SPP_PATTERN S008SPP_PATTERN\nKGN_ACON S009SPP_PATTERN S010SPP_PATTERN\nKGN_SBGR S011SPP_PATTERN S012SPP_PATTERN\nRADGR S013SPP_PATTERN S014SPP_PATTERN\nRADSN S015SPP_PATTERN S016SPP_PATTERN\nRFAC S017SPP_PATTERN S018SPP_PATTERN\nRZC_H S019SPP_PATTERN S020SPP_PATTERN\nRZL_INF S021SPP_PATTERN S022SPP_PATTERN","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"where the numbering may depend on the number of actively perturbed parameters.","category":"page"},{"location":"EPS/SPP/#Cy40h111-settings-(NB-only-log-normal-distribution-possible)","page":"SPP","title":"Cy40h111 settings (NB only log-normal distribution possible)","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"In config_exp.h:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SDEV_SPP = 3.0 # Standard deviation of the pattern","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Perturbation Det. value Recommended range CMPERT (CMPERT1) Clipping range Mean or median\nLPERT_PSIGQSAT 0.02, but set to 0.03 0-0.06 0.4 (0.1) No Mean\nLPERT_CLDDPTHDP 4000 1000-8000 0.4 (0.1) No Mean\nLPERT_ICE_CLD_WGT 1 0-2 0.4 (0.1) No Mean\nLPERT_ICENU 1 0.1-10 0.7 (0.35) No Median\nLPERT_KGN_ACON 10 2-50 0.5 (0.25) No Mean\nLPERT_KGN_SBGR 1, but set to 0.5 0.01-1 0.2 (0.1) 0.0 - 1.0 Mean\nLPERT_RADGR 0, but set to 0.5 0-1 0.3 (0.15) 0.0 - 2.0 Mean\nLPERT_RADSN 0, but set to 0.5 0-1 0.3 (0.15) 0.0 - 2.0 Mean\nLPERT_RFAC_TWOC 2 0.5-3 0.4 (0.1) No Mean\nLPERT_RZC_H 0.15 0.1-0.25 0.4 (0.1) No Mean\nLPERT_RZL_INF 100 30-300 0.6 (0.15) No Mean","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"In cy 40 the output of patterns and tendencies was as follows:","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"The raw and scaled patterns are stored in the vertical column of SNNNEZDIAG01 using the index given in the SPP initialization. Thus","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"...\nKGET_SEED_SPP: PSIGQSAT 10000 1841082593\n pattern 1 for PSIGQSAT using seed 1841082593\nKGET_SEED_SPP: CLDDPTH 10002 570790063\n pattern 2 for CLDDPTH using seed 570790063\nKGET_SEED_SPP: CLDDPTHDP 10004 980493159\n pattern 3 for CLDDPTHDP using seed 980493159\nKGET_SEED_SPP: ICE_CLD_WGT 10008 1362729695\n pattern 4 for ICE_CLD_WGT using seed 1362729695\n...","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"would give us","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Perturbation raw pattern scaled pattern\nPSIGQSAT S001EZDIAG01 S002EZDIAG01\nCLDDPTH S003EZDIAG01 S004EZDIAG01\nCLDDPTHDP S005EZDIAG01 S006EZDIAG01\nICE_CLD_WGT S007EZDIAG01 S008EZDIAG01","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"and so on","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPPT pattern EZDIAG02 (same in all levels)","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP tendencies PtendU EZDIAG03","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP tendencies PtendV EZDIAG04","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP tendencies PtendT EZDIAG05","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"SPP tendencies PtendQ EZDIAG06","category":"page"},{"location":"EPS/SPP/#Suggestions-for-parameters-to-include-in-SPP:","page":"SPP","title":"Suggestions for parameters to include in SPP:","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"Parameter Description Deterministic value cy43 Suggested range of values suggestion for parameter to correlate with Person responsible for implementing\n Terminal fall velocities of rain, snow and graupel Sibbo\nRFRMIN(39) Depo_rate_graupel RFRMIN 39 and 40 should approximately respect log10C = -3.55 x + 3.89, see eq. 6.2 on p. 108 in the meso-NH documentation: [https://hirlam.org/trac/attachment/wiki/HarmonieSystemDocumentation/EPS/SPP/sciICE3doc_p3.pdf Doc] Pirkka\nRFRMIN(40) Depo_rate_snow) RFRMIN 39 and 40 should approximately respect log10C = -3.55 x + 3.89, see eq. 6.2 on p. 108 in the meso-NH documentation: [https://hirlam.org/trac/attachment/wiki/HarmonieSystemDocumentation/EPS/SPP/sciICE3doc_p3.pdf Doc] Pirkka\nRFRMIN(16) Distr_snow_c to be correlated with RFRMIN(17) \nRFRMIN(17) Distr_snow_x to be correlated with RFRMIN(16) ","category":"page"},{"location":"EPS/SPP/#Experiments","page":"SPP","title":"Experiments","text":"","category":"section"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"List with cy43h22 experiments is here: [wiki:HarmonieSystemDocumentation/EPS/ExplistSPPcy43 List of experiments]","category":"page"},{"location":"EPS/SPP/","page":"SPP","title":"SPP","text":"A guide for running the tuning experiments is here: [wiki:HarmonieSystemDocumentation/EPS/HowtoSPPcy43 Guide]","category":"page"},{"location":"EPS/Howto/#eps-howto","page":"Howto","title":"How to run an ensemble experiment","text":"","category":"section"},{"location":"EPS/Howto/#Simple-configuration","page":"Howto","title":"Simple configuration","text":"","category":"section"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Running an ensemble experiment is not very different from running a deterministic one. The basic instructions about setup are the same and will not be repeated here. ","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"What is different is that in ecf/config_exp.h one needs to pay attention to this particular section:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"# *** Ensemble mode general settings. ***\n# *** For member specific settings use suites/harmonie.pm ***\nENSMSEL= # Ensemble member selection, comma separated list, and/or range(s):\n # m1,m2,m3-m4,m5-m6:step mb-me == mb-me:1 == mb,mb+1,mb+2,...,me\n # 0=control. ENSMFIRST, ENSMLAST, ENSSIZE derived automatically from ENSMSEL.\nENSINIPERT= # Ensemble perturbation method (bnd). Not yet implemented: etkf, hmsv, slaf.\nENSCTL= # Which member is my control member? Needed for ENSINIPERT=bnd. See harmonie.pm.\nENSBDMBR= # Which host member is used for my boundaries? Use harmonie.pm to set.\nENSMFAIL= # Failure tolerance for all members. Not yet implemented.\nENSMDAFAIL= # Failure tolerance for members doing own DA. Not yet implemented.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"In addition one should also look at BDSTRATEGY, choose eps_ec if you want to use EC EPS at the boundaries (this option gets the EC EPS data from the GLAMEPS ECFS archive). If you want to use SLAF see here.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"What really triggers EPS mode is having a non-empty ENSMSEL (ensemble member selection). The reason the specification looks a bit complicated is that our ensemble members do not necessarily have to be numbered consecutively from 0 or 1 and up, but can also be specified with steps. The rationale behind this is that we may want to e.g. downscale a subset of the 51 ECMWF EPS members, but not necessarily starting from their lowest number or taking them consecutively. ENSMSEL is a heritage from the Hirlam EPS system and has been retained in Harmonie.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"In the simplest case of consecutive numbering, say we want a control run (member 0) and 20 perturbed members. We can then put","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"ENSMSEL=0-20","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Now assume that we still have a control and 20 members, but that we want to take only every second pair of the host EPS members, i.e., take 0,1,2, skip 3,4, take 5,6, skip 7,8 and so on. The following specifications are then equivalent:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"ENSMSEL=0,1,2,5,6,9,10,13,14,17,18,21,22,25,26,29,30,33,34,37,38\nENSMSEL=0,1-37:4,2-38:4","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"In the second version we use the step option, so our list is 0, 1 to 37 in steps of 4 and 2 to 38 in steps of 4. The system will take care of transforming this into an ascending list for easier handling within the script system, but we don't have to worry about that.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"The ENSMSEL selection is still not totally flexible. It would not be possible to have more than one of our members having boundaries from the same member of the host model. This might be relevant in the case of multiple physics, and multiple control members. For this reason the variable ENSBDMBR has also been added (in [10953]). The usage of this variable is explained in the next section (advanced configuration).","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"For the rest of the ENS... variables, not everything planned is implemented by the time of this writing. The only valid choice (except empty) for ENSINIPERT (initial state perturbation method) is \"bnd\". This option means to take the perturbations of the first (interpolated) boundary file, and add these perturbations to a reference (control) analysis. This will involve the script scr/PertAna, a section of its header is quoted below:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"#| Different perturbation methods are distinguished by\n#| ENSINIPERT. This script implements ENSINIPERT=bnd\n#|\n#| bnd: boundary data mode\n#| an($ENSMBR) = an(cntrl) + bnd1($ENSMBR) - bnd1(cntrl)\n#| where bnd1 denotes the first boundary file","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Which member is the control member is specified by the variable ENSCTL.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"But how to specify that one (or more) member(s) run assimilation and others do not, or in other words, how to specify member specific values to the variables in config_exp.h? This is the topic of the next section.","category":"page"},{"location":"EPS/Howto/#Advanced-configuration,-member-specific-settings","page":"Howto","title":"Advanced configuration, member specific settings","text":"","category":"section"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"It would perhaps have been possible to also have member specific configuration in config_exp.h, but since perl is more flexible with lists than the shell, and since perl is already used extensively in the Harmonie system, it was decided to extend the handling of the template definition files in ecFlow in such a way that every tdf can now also have an associated perl module to help in its interpretation. And, since after the changesets [10930] and [10932] there is no separate tdf for HarmonEPS anymore (harmonie.tdf is used also for EPS runs), the file that is used for member specific settings is thus suites/harmonie.pm.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"The idea of harmonie.pm is to be able to override some of the environment variables of config_exp.h with new values for selected members of the ensemble. This is achieved by populating the perl hash %env with key => value pairs. The keys are names of environment variables, like ANAATMO, ANASURF, PHYSICS etc. Only names that are present and exported in config_exp.h should be used as keys. Values can take four different forms:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"A hash, i.e., a new set of key => value pairs. The syntax in this case is { m1 => val1, m2 => val2, ... }. The numbers m1, m2, etc. must be member numbers given in ENSMSEL. Order is irrelevant, and only members with values different from the default need be listed of course.\nAn array, where indices implicitly run from 0 and up. The syntax in this case is [ val0, val1, val2, ...]. Here the array should have as many values as members given in ENSMSEL, but if not, missing values will be recycled from the start of the array (as many times as necessary). Thus, using arrays will give values to all members, and order is important.\nA scalar (string). This string is subject to variable substitution, i.e., any occurrence of the substring @EEE@ will be replaced by the relevant 3-digit ensemble member number.\nA subroutine (reference), syntax is typically sub { my $mbr = shift; return \"something dependent on $mbr\"; }. The arguments given to the subroutine are the \"args\" of the invoking &Env('SOMEVAR',args) call (see below).","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"In addition to the hash %env, harmonie.pm also contains a subroutine Env. In suites/harmonie.tdf many earlier occurences of $ENV{SOMEVAR} have now been replaced by subroutine calls &Env('SOMEVAR','@EEE@'). The @EEE@ argument will be replaced by the relevant member number before invocation, and Env will check the hash %env for a member specific setting to possibly return instead of the default value $ENV{SOMEVAR}. There should normally be no need to make changes to the subroutine Env, putting entries into the hash %env ought to be enough.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Note also that not every occurrence of $ENV{...} has been replaced by a corresponding &Env(...) in harmonie.tdf, only those variables that are most likely to have variations among members are changed. If you need variations in e.g. $HOST_MODEL, then harmonie.tdf needs to be updated so that those variations are respected within the ensemble (EEE) loops.","category":"page"},{"location":"EPS/Howto/#An-example","page":"Howto","title":"An example","text":"","category":"section"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"We will now look at one particular example, in order to (hopefully) make the descriptions above a bit more clear. Our intent is to have an ensemble with a mix of members with AROME and ALARO physics, with one control member and 10 perturbed members for each. The control members will both do their own 3DVAR assimilation, while perturbed members will have ANAATMO=blending. But with ENSINIPERT=bnd, the control analysis will be used also by the perturbed members. All members will do surface assimilation, but the forecast interval differs. The control members have a forecast interval of 6 hours (because of the 3D-Var), while the perturbed members have FCINT=12. To achieve this, we have the following settings in config_exp.h:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"ANAATMO=blending\nANASURF=CANARI_OI_MAIN\nFCINT=12\nBDSTRATEGY=eps_ec\nENSMSEL=0-21\nENSINIPERT=bnd\nENSCTL=\nENSBDMBR=","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"In harmonie.pm our %env looks as follows:","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"%env = (\n 'ANAATMO' => { 0 => '3DVAR', 1 => '3DVAR' },\n 'FCINT' => { 0 => 6, 1 => 6 },\n 'PHYSICS' => [ 'arome','alaro','alaro','arome'],\n 'ENSCTL' => [ '000', '001', '001', '000'],\n 'ENSBDMBR' => [ 0, 0, 1..20],\n\n### Normally NO NEED to change the variables below\n 'ARCHIVE' => '${ARCHIVE}mbr@EEE@/',\n 'CLIMDIR' => '$CLIMDIR/mbr@EEE@',\n 'OBDIR' => '$OBDIR/mbr@EEE@',\n 'VFLDEXP' => '${EXP}mbr@EEE@',\n 'BDDIR' => sub { my $mbr = shift;\n if ($ENV{COMPCENTRE} eq 'ECMWF') {\n return '$BDDIR/mbr'.sprintf('%03d',$mbr);\n } else {\n return '$BDDIR/mbr'.sprintf('%03d',&Env('ENSBDMBR',$mbr));\n }\n },\n 'FirstHour' => sub { my $mbr = shift;\n return $ENV{StartHour} % &Env('FCINT',$mbr);\n }\n );","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"ANAATMO is straightforward, only the control members need an exception from blending, so using a hash is most appropriate. Similarly for FCINT. For PHYSICS we have used an array and the fact that the array will be recycled. Thus member 0 will be the AROME control, while member 1 will be the ALARO control. The reason why we did not simply put a 2-element array [ 'arome','alaro'] to be repeated is that since the ECMWF perturbations come in +/- pairs, we don't want all the '+' perturbations to be always with the same physics (and the '-' perturbations with the other type). Therefore, we added a second pair with the order reversed, to alternate +/- perturbations between AROME and ALARO members. ENSCTL follows the same pattern as PHYSICS. Note the need for 3-digit numbers in ENSCTL, at present this is necessary to avoid parsing errors in the preparation step of ecFlow.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Note also how we have used ENSBDMBR. For both the AROME control (member 0) and ALARO control (member 1), we have used the EC EPS control member 0 to provide boundaries. The syntax 1..20 is a perl shorthand for the list 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20.","category":"page"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"Note added after changeset [12537]: The setting of ENSBDMBR created a race condition in the boundary extraction for runs at ECMWF. This is hopefully solved by the new definition for BDDIR, which makes use of the possibility of having a subroutine to compute the member specific settings. Another example where a subroutine came out handy was for the setting of FirstHour.","category":"page"},{"location":"EPS/Howto/#Further-reading","page":"Howto","title":"Further reading","text":"","category":"section"},{"location":"EPS/Howto/","page":"Howto","title":"Howto","text":"More specific instructions and information about known problems can be found here.","category":"page"},{"location":"Build/Build_with_cmake/#Build-with-CMake","page":"CMake","title":"Build with CMake","text":"","category":"section"},{"location":"Build/Build_with_cmake/#Background","page":"CMake","title":"Background","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"CMake is a build system generator supporting multiple build systems and programming languages, specifically Fortran is a first-class citizen there, allowing, for example, out-of-the-box handling of the inter-module dependencies. A build system generator there means that description of the build procedure written in the CMake-script language is used by the cmake tool to generate the actual build system, for example using Unix Makefiles or Ninja generator. Thus, all modifications should be performed on the CMake-script level and not within the generated build system as these changes will be overwritten when re-running cmake at some point.","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"Why providing yet another alternative for building HARMONIE-AROME? Well, makeup does a very good job building the system, however it's an in-house solution which has a number of limitations:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"makeup is an in-house build system, so there are components that require more maintenance compared to a standardized build tool\nmakeup uses a considerable number of sequential steps, which increase the total build time\nthe configure step takes quite some time, although in some cases it can be skipped, but users have to remember when they must re-run configure and this dependency is not enforced by makeup\nnot all the dependencies are tracked by makeup, for example updating configure files does not trigger a re-build","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"In an attempt to fix these limitation of makeup, CMake was chosen as an alternative. CMake has a mature Fortran support and improves upon some shortcomings of makeup with little effort (well, it obviously has its own fair share of quirks, but that's a different story...). Additionally, using CMake allows us to enforce usage requirements and dependencies between different components of HARMONIE-AROME, for example, it's a good idea to ensure that SURFEX routines do not directly call cloud microphysics functions. Currently makeup does not enforce these boundaries and this task is left to the developers who implement the new code. Of course, something like this can also be implemented with makeup, but it would require considerable development efforts.","category":"page"},{"location":"Build/Build_with_cmake/#Getting-started-with-CMake","page":"CMake","title":"Getting started with CMake","text":"","category":"section"},{"location":"Build/Build_with_cmake/#Selecting-the-CMake-based-build-system-when-installing-HARMONIE-AROME","page":"CMake","title":"Selecting the CMake-based build system when installing HARMONIE-AROME","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"If all the config files are available, building HARMONIE-AROME with CMake should be as simple as setting the BUILD_WITH variable when invoking Harmonie:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"config-sh/Harmonie install BUILD_WITH=cmake","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"or alternatively, setting the desired option in ecf/config_exp.h.","category":"page"},{"location":"Build/Build_with_cmake/#Building-HARMONIE-AROME-with-CMake-from-the-command-line","page":"CMake","title":"Building HARMONIE-AROME with CMake from the command line","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"Sometimes calling Harmonie install is not the best choice and one might want to compile the code from the command line. In this case compilation of HARMONIE-AROME with CMake consists of three individual steps:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"compiling the auxiliary libraries (gribex and such)\ncompiling the main code of HARMONIE-AROME\noptionally, compile some additional tools (for example, gl)","category":"page"},{"location":"Build/Build_with_cmake/#1.-Compiling-the-auxiliary-libraries","page":"CMake","title":"1. Compiling the auxiliary libraries","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"This step is rather straightforward, assuming that HARMONIE-AROME code is located under the path stored in the HM_LIB environment variable one can adapt the following snippet to compile all the required libraries:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"CMAKE_FLAGS=\"-DCONFIG_FILE=\"\nINSTALL_DIR=\"\"\n\nAUX_LIBS='bufr_405 gribex_370 rgb_001 dummies_006/mpidummy'\nfor project in $AUX_LIBS; do\n echo \"Compiling $project\"\n current_project_dir=$HM_LIB/util/auxlibs/$project\n current_build_dir=\"build-`echo $project | sed 's|/|-|g'`\"\n\n mkdir -p $current_build_dir && cd $current_build_dir\n\n # CMake build type can be changed to Debug, if needed\n cmake $current_project_dir -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR $CMAKE_FLAGS\n # Here -j tells CMake how many parallel compilation processes to use\n cmake --build . --target install -j16\n\n cd ..\ndone","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"If a specific config file is not there, you can try your luck with using generic config files provided for different compiler types. To do so, just drop the -DCONFIG_FILE from the list of CMake command line arguments and CMake will try to load a suitable configuration file, if available.","category":"page"},{"location":"Build/Build_with_cmake/#2.-Compiling-the-main-code-of-HARMONIE-AROME","page":"CMake","title":"2. Compiling the main code of HARMONIE-AROME","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"Following the procedure described in the previous step, one can use a similar approach to compile the main code (here, one of the generic configuration files is used, of course it can be replaced with a different one or dropped but it should be the same config file which was used to compile auxiliary libraries):","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"mkdir build && cd build\n# Configure and generate the build system\ncmake $HM_LIB/src \\\n -G Ninja # Use Ninja to build HARMONIE-AROME, drop to build with Makefiles\n -DCMAKE_BUILD_TYPE=Release \\\n -DCONFIG_FILE=$HM_LIB/util/util/cmake/config.GNU.cmake \\\n -Dbufr_DIR=$INSTALL_DIR/lib/cmake/bufr \\\n -Dgribex_DIR=$INSTALL_DIR/lib/cmake/gribex \\\n -Drgb_DIR=$INSTALL_DIR/lib/cmake/rgb \\\n -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR\n\n# Build and install HARMONIE-AROME\ncmake --build . --target install -j16","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"note: Note\nObviously, when compiling from command line, additional command line arguments might be provided to CMake at the configure step as needed. However, a preferred solution is to use a configuration file to handle as much of the machine-specific details as possible.","category":"page"},{"location":"Build/Build_with_cmake/#3.-Compiling-the-tools","page":"CMake","title":"3. Compiling the tools","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"The approach is the same as with the main code, however, you might want to add -Dharmonie_DIR=$INSTALL_DIR/lib/cmake/harmonie if the tool in question needs HARMONIE-AROME libraries for compilation.","category":"page"},{"location":"Build/Build_with_cmake/#Configuration-files","page":"CMake","title":"Configuration files","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"Configuration files, similarly to makeup, are used to provide compilation flags, define external libraries to use when compiling the code et cetera. Thus, having a correct configuration file is one of the key elements of successful building HARMONIE-AROME. The CMake-based build system of HARMONIE-AROME uses configuration files written in JSON format. The JSON configuration files use the following naming convention: config.PLATFORM.COMPILER.json where PLATFORM is the name of your PC/HPC/OS and COMPILER is the compilier identification as specified by CMake in https://cmake.org/cmake/help/latest/variable/CMAKELANGCOMPILER_ID.html. JSON was chosen to make these files more declarative and, hopefully, easier to maintain and modify than plain CMake-script-based files would be.","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"The main config file, which is used to build auxiliary libraries and the main HARMONIE-AROME code should be placed under util/cmake/config directory. This file has a following top-level structure:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"{\n \"build_tools\":[],\n \"dependencies\":[],\n \"programs\":[],\n \"configure\":{},\n \"compile\":[],\n \"compile_single\":[],\n \"compile_double\":[],\n \"custom_compile\":{},\n \"link\":[]\n}","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"there all the sections except configure, custom_compile and link are mandatory. In the following a detailed description of all the config file section is provided.","category":"page"},{"location":"Build/Build_with_cmake/#The-build_tools-section","page":"CMake","title":"The build_tools section","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"This section lists the external tools required for compiling HARMONIE-AROME, excluding compilers. Currently, this section should always contain the two following entries: FLEX and BISON, but in future this list might be extended. So, currently this section is always defined as:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"\"build_tools\":[\"BISON\", \"FLEX\"]","category":"page"},{"location":"Build/Build_with_cmake/#The-dependencies-section","page":"CMake","title":"The dependencies section","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"This section provides a list of external (external here means \"not found within the src directory of HARMONIE-AROME\", so, for example, gribex is also an external library for CMake build) libraries required to compile and link HARMONIE-AROME code. Since finding a correct library can be a tricky task, this section allows a number of options for specifying external dependencies:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"You can completely rely on CMake and delegate it all the work for finding a dependency. In this case, a dependency is added as a simple string to the dependencies section, for example:\n\"dependencies\":[\"OpenMP\", \"LAPACK\"]\nThis option is for packages like OpenMP which do not involve finding libraries located in unusual places as often happens when using environment modules.\nYou can still rely on CMake to find the package, but provide a bit of detail on how to find it. In this case a dependency is added as a JSON object of the following form (using the NetCDF library as an example):\n{\n \"pkg\":\"NetCDF\",\n \"use_cmake_config\":false,\n \"components\":[\"C\",\"Fortran\"],\n \"hints\":[\"$ENV{NETCDF_DIR}\",\"$ENV{NETCDF_F_DIR}\"],\n \"cmake\":{\"NETCDF_USE_DEFAULT_PATHS\":true}\n}\nThere the use_cmake_config field tells CMake which mechanism it should use to find the library in question. When use_cmake_config is set to true CMake will look for CMake configuration files installed with the library, which is a recommended option in modern CMake. Even though it's a recommended by the CMake authors option, not all the libraries provide CMake configuration files so just setting use_cmake_config to true does not work all the time (at least it works for the auxiliary libraries compiled with CMake). You might want to provide a -D_DIR= as an argument to the cmake command when configuring the build if CMake fails to find a package.\nAnother alternative is setting use_cmake_config to false, then CMake will try to find the required dependency using the hand-written scripts provided by the authors of CMake (or found under the util/cmake directory of HARMONIE-AROME). These scripts usually do quite some work trying to find a dependency and sometimes fail even if library is there, for example when it's located in a very unusual place or has an unexpected pkg-config name.\nWhen using \"use_cmake_config\":false one may add a components list, if only a language-specific version of the dependency is wanted. For example, having:\n{\"pkg\":\"NetCDF\", \"use_cmake_config\":false, \"components\":[\"C\"]}\nCMake would not try to find the Fortran version of NetCDF library, which can be useful sometimes. Use this option of defining external dependencies for such libraries as MPI, which can have multiple vendors and subtle differences between libraries provided (for example CMake should be able to figure out the correct MPI libraries for both MPICH and Open-MPI).\nThe hints list tells CMake which directories it should check when looking for a library.\nnote: Note\nElements of the hints list are simply added to the _ROOT CMake variable. If CMake's find_package() does not use this variable providing hints would have no effect.\nFinally, the cmake section provides a key-value set of elements, which will be converted to corresponding CMake variables set before calling find_package(). Thus, it can be used to control the behaviour of find_package.\nnote: Note\nVariables set in the cmake section are local to the current package and do not modify the global scope.\nWhen nothing of the above works, you can provide all the flags manually. To do so, use the following form for a dependency entry:\n{\n \"pkg\":\"HDF5\",\n \"raw_lib\":{\n \"include\":\"$ENV{HDF5_DIR}/include\",\n \"lib_directory\":\"$ENV{HDF5_DIR}/lib\",\n \"lib\":[\"-lhdf5hl_fortran\", \"-lhdf5_fortran\", \"-lhdf5_hl\", \"-lhdf5\"]\n }\n}\nwhere the raw_lib component provides all the needed include and link directories as well as the link libraries. If some some fields of the raw_lib object are unneeded they can be set to null:\n{\"pkg\":\"rt\", \"raw_lib\":{\"include\":null, \"lib_directory\":null, \"lib\":\"-lrt\"}}\nNote that all the members of the raw_lib object can be defined as lists:\n{\n \"pkg\":\"HDF5\",\n \"raw_lib\":{\n \"include\":[\"$ENV{HDF5_DIR}/include\",\"$ENV{HDF5_DIR}/include_fortran\"],\n \"lib_directory\":[\"$ENV{HDF5_DIR}/lib\",\"$ENV{HDF5_DIR}/lib64\"],\n \"lib\":[\"-lhdf5hl_fortran\", \"-lhdf5_fortran\", \"-lhdf5_hl\", \"-lhdf5\"]\n }\n}\nWhen providing the required libraries in the lib section one can skip the -l prefix, thus having \"lib\":\"-lrt\" and \"lib\":\"rt\" would have the same effect.\nSometimes it can be useful to define a dummy library in CMake without actually looking for the library files, for example when compiling a tool which uses only a subset of HARMONIE-AROME libraries. When loading HARMONIE-AROME as a CMake package all the targets associated with external dependencies should be present, but some of these dependencies might be not needed for successful linking (or these are added implicitly by the programming environment and adding them for the second time in CMake won't make any difference). In this case you can use the following:\n{\"pkg\":\"gribex\", \"dummy\":true}","category":"page"},{"location":"Build/Build_with_cmake/#The-programs-section","page":"CMake","title":"The programs section","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"This section provides a list of HARMONIE-AROME programs to build (excluding MASTERODB which is always built by the CMake build system), for example:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"\"programs\":[\"BATOR\", \"oulan\", \"ioassign\", \"LSMIX\"]","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"CMake will try to find the corresponding Fortran source files and will complain if unable to do so. Currently it is not possible to explicitly tell CMake via JSON config which program should be compiled from which source file. If CMake is unable to figure out how to compile a program the CMake-code should be altered to tell it how to do so.","category":"page"},{"location":"Build/Build_with_cmake/#The-configure-section","page":"CMake","title":"The configure section","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"This section provides various configure-time flags controlling the build system or selecting features. Currently in the main HARMONIE-AROME config file this section is defined as follows:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"\"configure\":{\n \"use_flexfix\":true\n , \"precision\":\"double\"\n},","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"There the use_flexfix option controls the usage of the flexfix wrapper, set it to true to use the flexfix wrapper when generating lexers for the Blacklist and ODB compilers. Having use_flexfix as false results in using the flex tool directly. The precision option controls the floating point precision of the build, with possible values of double and single. This is a mandatory option, removing it would result in a CMake fatal error at the configure time.","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"The configure file for gl has the following options in the configure section:","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"\"configure\":{\n \"use_aladin\":true\n , \"use_netcdf\":true\n , \"check_preferlocalconcepts_bug\":true\n}","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"Set use_aladin to true to compile with FA support (requires HARMONIE-AROME libraries). Set use_netcdf to true to enable NetCDF support in gl. Set check_preferlocalconcepts_bug to true to perform a configure-time auto-detection test checking whether the supplied eccodes version is affected by the preferLocalConcepts bug. This test can be skipped, although in such a case corresponding CPP definitions should be manually added to the config file if a 'bad' eccodes version is used.","category":"page"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"note: Note\nIf an option is removed from the configure section it will be treated by CMake as set to false in case of boolean flags or empty string for string options.","category":"page"},{"location":"Build/Build_with_cmake/#Adding-a-new-configure-option","page":"CMake","title":"Adding a new configure option","text":"","category":"section"},{"location":"Build/Build_with_cmake/","page":"CMake","title":"CMake","text":"There's no predefined list of configure section members of CMake JSON config, any element found in this section will be available as CONFIG_