Let’s plot the first tree and interpret the table output. For tree=0,
the root feature (node=0) is satisfaction level, which is split at value
.465. Is satisfaction_level < .465? If Yes, observations go left to
@@ -271,13 +276,13 @@
xgboost binary classification model
3123, the improvement in training loss.
The quality in the leaves is the prediction for observations in those
+
+
The quality in the leaves is the prediction for observations in those
leaves represented by log odds. To interpret them as probabilities, use
the function below. Importantly, a log odds of 0 is a 0.5
probability.
diff --git a/docs/articles/Inference-with-xgboost_files/figure-html/unnamed-chunk-14-1.png b/docs/articles/Inference-with-xgboost_files/figure-html/unnamed-chunk-14-1.png
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diff --git a/docs/articles/Inference-with-xgboost_files/figure-html/unnamed-chunk-6-2.png b/docs/articles/Inference-with-xgboost_files/figure-html/unnamed-chunk-6-2.png
index afb5796..2bb59d6 100644
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diff --git a/docs/articles/Inference-with-xgboost_files/grViz-binding-1.0.11/grViz.js b/docs/articles/Inference-with-xgboost_files/grViz-binding-1.0.11/grViz.js
new file mode 100644
index 0000000..f801317
--- /dev/null
+++ b/docs/articles/Inference-with-xgboost_files/grViz-binding-1.0.11/grViz.js
@@ -0,0 +1,91 @@
+HTMLWidgets.widget({
+
+ name: 'grViz',
+
+ type: 'output',
+
+ initialize: function(el, width, height) {
+
+ return {
+ // TODO: add instance fields as required
+ };
+ },
+
+ renderValue: function(el, x, instance) {
+ // Use this to sort of make our diagram responsive
+ // or at a minimum fit within the bounds set by htmlwidgets
+ // for the parent container
+ function makeResponsive(el){
+ var svg = el.getElementsByTagName("svg")[0];
+ if (svg) {
+ if (svg.width) {svg.removeAttribute("width")}
+ if (svg.height) {svg.removeAttribute("height")}
+ svg.style.width = "100%";
+ svg.style.height = "100%";
+ }
+ }
+
+ if (x.diagram !== "") {
+
+ if (typeof x.config === "undefined"){
+ x.config = {};
+ x.config.engine = "dot";
+ x.config.options = {};
+ }
+
+ try {
+
+ el.innerHTML = Viz(x.diagram, format="svg", engine=x.config.engine, options=x.config.options);
+
+ makeResponsive(el);
+
+ if (HTMLWidgets.shinyMode) {
+ // Get widget id
+ var id = el.id;
+
+ $("#" + id + " .node").click(function(e) {
+ // Get node id
+ var nodeid = e.currentTarget.id;
+ // Get node text object and make an array
+ var node_texts = $("#" + id + " #" + nodeid + " text");
+ //var node_path = $("#" + nodeid + " path")[0];
+ var text_array = node_texts.map(function() {return $(this).text(); }).toArray();
+ // Build return object *obj* with node-id, node text values and node fill
+ var obj = {
+ id: nodeid,
+ //fill: node_path.attributes.fill.nodeValue,
+ //outerHMTL: node_path.outerHTML,
+ nodeValues: text_array
+ };
+ // Send *obj* to Shiny's inputs (input$[id]+_click e.g.: input$vtree_click))
+ Shiny.setInputValue(id + "_click", obj, {priority: "event"});
+ });
+ }
+
+ // set up a container for tasks to perform after completion
+ // one example would be add callbacks for event handling
+ // styling
+ if (typeof x.tasks !== "undefined") {
+ if ((typeof x.tasks.length === "undefined") ||
+ (typeof x.tasks === "function")) {
+ // handle a function not enclosed in array
+ // should be able to remove once using jsonlite
+ x.tasks = [x.tasks];
+ }
+ x.tasks.map(function(t){
+ // for each tasks add it to the mermaid.tasks with el
+ t.call(el);
+ });
+ }
+ } catch(e){
+ var p = document.createElement("pre");
+ p.innerText = e;
+ el.appendChild(p);
+ }
+ }
+
+ },
+
+ resize: function(el, width, height, instance) {
+ }
+});
diff --git a/docs/articles/Inference-with-xgboost_files/htmltools-fill-0.5.8.1/fill.css b/docs/articles/Inference-with-xgboost_files/htmltools-fill-0.5.8.1/fill.css
new file mode 100644
index 0000000..841ea9d
--- /dev/null
+++ b/docs/articles/Inference-with-xgboost_files/htmltools-fill-0.5.8.1/fill.css
@@ -0,0 +1,21 @@
+@layer htmltools {
+ .html-fill-container {
+ display: flex;
+ flex-direction: column;
+ /* Prevent the container from expanding vertically or horizontally beyond its
+ parent's constraints. */
+ min-height: 0;
+ min-width: 0;
+ }
+ .html-fill-container > .html-fill-item {
+ /* Fill items can grow and shrink freely within
+ available vertical space in fillable container */
+ flex: 1 1 auto;
+ min-height: 0;
+ min-width: 0;
+ }
+ .html-fill-container > :not(.html-fill-item) {
+ /* Prevent shrinking or growing of non-fill items */
+ flex: 0 0 auto;
+ }
+}
diff --git a/docs/articles/Inference-with-xgboost_files/htmlwidgets-1.6.4/htmlwidgets.js b/docs/articles/Inference-with-xgboost_files/htmlwidgets-1.6.4/htmlwidgets.js
new file mode 100644
index 0000000..1067d02
--- /dev/null
+++ b/docs/articles/Inference-with-xgboost_files/htmlwidgets-1.6.4/htmlwidgets.js
@@ -0,0 +1,901 @@
+(function() {
+ // If window.HTMLWidgets is already defined, then use it; otherwise create a
+ // new object. This allows preceding code to set options that affect the
+ // initialization process (though none currently exist).
+ window.HTMLWidgets = window.HTMLWidgets || {};
+
+ // See if we're running in a viewer pane. If not, we're in a web browser.
+ var viewerMode = window.HTMLWidgets.viewerMode =
+ /\bviewer_pane=1\b/.test(window.location);
+
+ // See if we're running in Shiny mode. If not, it's a static document.
+ // Note that static widgets can appear in both Shiny and static modes, but
+ // obviously, Shiny widgets can only appear in Shiny apps/documents.
+ var shinyMode = window.HTMLWidgets.shinyMode =
+ typeof(window.Shiny) !== "undefined" && !!window.Shiny.outputBindings;
+
+ // We can't count on jQuery being available, so we implement our own
+ // version if necessary.
+ function querySelectorAll(scope, selector) {
+ if (typeof(jQuery) !== "undefined" && scope instanceof jQuery) {
+ return scope.find(selector);
+ }
+ if (scope.querySelectorAll) {
+ return scope.querySelectorAll(selector);
+ }
+ }
+
+ function asArray(value) {
+ if (value === null)
+ return [];
+ if ($.isArray(value))
+ return value;
+ return [value];
+ }
+
+ // Implement jQuery's extend
+ function extend(target /*, ... */) {
+ if (arguments.length == 1) {
+ return target;
+ }
+ for (var i = 1; i < arguments.length; i++) {
+ var source = arguments[i];
+ for (var prop in source) {
+ if (source.hasOwnProperty(prop)) {
+ target[prop] = source[prop];
+ }
+ }
+ }
+ return target;
+ }
+
+ // IE8 doesn't support Array.forEach.
+ function forEach(values, callback, thisArg) {
+ if (values.forEach) {
+ values.forEach(callback, thisArg);
+ } else {
+ for (var i = 0; i < values.length; i++) {
+ callback.call(thisArg, values[i], i, values);
+ }
+ }
+ }
+
+ // Replaces the specified method with the return value of funcSource.
+ //
+ // Note that funcSource should not BE the new method, it should be a function
+ // that RETURNS the new method. funcSource receives a single argument that is
+ // the overridden method, it can be called from the new method. The overridden
+ // method can be called like a regular function, it has the target permanently
+ // bound to it so "this" will work correctly.
+ function overrideMethod(target, methodName, funcSource) {
+ var superFunc = target[methodName] || function() {};
+ var superFuncBound = function() {
+ return superFunc.apply(target, arguments);
+ };
+ target[methodName] = funcSource(superFuncBound);
+ }
+
+ // Add a method to delegator that, when invoked, calls
+ // delegatee.methodName. If there is no such method on
+ // the delegatee, but there was one on delegator before
+ // delegateMethod was called, then the original version
+ // is invoked instead.
+ // For example:
+ //
+ // var a = {
+ // method1: function() { console.log('a1'); }
+ // method2: function() { console.log('a2'); }
+ // };
+ // var b = {
+ // method1: function() { console.log('b1'); }
+ // };
+ // delegateMethod(a, b, "method1");
+ // delegateMethod(a, b, "method2");
+ // a.method1();
+ // a.method2();
+ //
+ // The output would be "b1", "a2".
+ function delegateMethod(delegator, delegatee, methodName) {
+ var inherited = delegator[methodName];
+ delegator[methodName] = function() {
+ var target = delegatee;
+ var method = delegatee[methodName];
+
+ // The method doesn't exist on the delegatee. Instead,
+ // call the method on the delegator, if it exists.
+ if (!method) {
+ target = delegator;
+ method = inherited;
+ }
+
+ if (method) {
+ return method.apply(target, arguments);
+ }
+ };
+ }
+
+ // Implement a vague facsimilie of jQuery's data method
+ function elementData(el, name, value) {
+ if (arguments.length == 2) {
+ return el["htmlwidget_data_" + name];
+ } else if (arguments.length == 3) {
+ el["htmlwidget_data_" + name] = value;
+ return el;
+ } else {
+ throw new Error("Wrong number of arguments for elementData: " +
+ arguments.length);
+ }
+ }
+
+ // http://stackoverflow.com/questions/3446170/escape-string-for-use-in-javascript-regex
+ function escapeRegExp(str) {
+ return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&");
+ }
+
+ function hasClass(el, className) {
+ var re = new RegExp("\\b" + escapeRegExp(className) + "\\b");
+ return re.test(el.className);
+ }
+
+ // elements - array (or array-like object) of HTML elements
+ // className - class name to test for
+ // include - if true, only return elements with given className;
+ // if false, only return elements *without* given className
+ function filterByClass(elements, className, include) {
+ var results = [];
+ for (var i = 0; i < elements.length; i++) {
+ if (hasClass(elements[i], className) == include)
+ results.push(elements[i]);
+ }
+ return results;
+ }
+
+ function on(obj, eventName, func) {
+ if (obj.addEventListener) {
+ obj.addEventListener(eventName, func, false);
+ } else if (obj.attachEvent) {
+ obj.attachEvent(eventName, func);
+ }
+ }
+
+ function off(obj, eventName, func) {
+ if (obj.removeEventListener)
+ obj.removeEventListener(eventName, func, false);
+ else if (obj.detachEvent) {
+ obj.detachEvent(eventName, func);
+ }
+ }
+
+ // Translate array of values to top/right/bottom/left, as usual with
+ // the "padding" CSS property
+ // https://developer.mozilla.org/en-US/docs/Web/CSS/padding
+ function unpackPadding(value) {
+ if (typeof(value) === "number")
+ value = [value];
+ if (value.length === 1) {
+ return {top: value[0], right: value[0], bottom: value[0], left: value[0]};
+ }
+ if (value.length === 2) {
+ return {top: value[0], right: value[1], bottom: value[0], left: value[1]};
+ }
+ if (value.length === 3) {
+ return {top: value[0], right: value[1], bottom: value[2], left: value[1]};
+ }
+ if (value.length === 4) {
+ return {top: value[0], right: value[1], bottom: value[2], left: value[3]};
+ }
+ }
+
+ // Convert an unpacked padding object to a CSS value
+ function paddingToCss(paddingObj) {
+ return paddingObj.top + "px " + paddingObj.right + "px " + paddingObj.bottom + "px " + paddingObj.left + "px";
+ }
+
+ // Makes a number suitable for CSS
+ function px(x) {
+ if (typeof(x) === "number")
+ return x + "px";
+ else
+ return x;
+ }
+
+ // Retrieves runtime widget sizing information for an element.
+ // The return value is either null, or an object with fill, padding,
+ // defaultWidth, defaultHeight fields.
+ function sizingPolicy(el) {
+ var sizingEl = document.querySelector("script[data-for='" + el.id + "'][type='application/htmlwidget-sizing']");
+ if (!sizingEl)
+ return null;
+ var sp = JSON.parse(sizingEl.textContent || sizingEl.text || "{}");
+ if (viewerMode) {
+ return sp.viewer;
+ } else {
+ return sp.browser;
+ }
+ }
+
+ // @param tasks Array of strings (or falsy value, in which case no-op).
+ // Each element must be a valid JavaScript expression that yields a
+ // function. Or, can be an array of objects with "code" and "data"
+ // properties; in this case, the "code" property should be a string
+ // of JS that's an expr that yields a function, and "data" should be
+ // an object that will be added as an additional argument when that
+ // function is called.
+ // @param target The object that will be "this" for each function
+ // execution.
+ // @param args Array of arguments to be passed to the functions. (The
+ // same arguments will be passed to all functions.)
+ function evalAndRun(tasks, target, args) {
+ if (tasks) {
+ forEach(tasks, function(task) {
+ var theseArgs = args;
+ if (typeof(task) === "object") {
+ theseArgs = theseArgs.concat([task.data]);
+ task = task.code;
+ }
+ var taskFunc = tryEval(task);
+ if (typeof(taskFunc) !== "function") {
+ throw new Error("Task must be a function! Source:\n" + task);
+ }
+ taskFunc.apply(target, theseArgs);
+ });
+ }
+ }
+
+ // Attempt eval() both with and without enclosing in parentheses.
+ // Note that enclosing coerces a function declaration into
+ // an expression that eval() can parse
+ // (otherwise, a SyntaxError is thrown)
+ function tryEval(code) {
+ var result = null;
+ try {
+ result = eval("(" + code + ")");
+ } catch(error) {
+ if (!(error instanceof SyntaxError)) {
+ throw error;
+ }
+ try {
+ result = eval(code);
+ } catch(e) {
+ if (e instanceof SyntaxError) {
+ throw error;
+ } else {
+ throw e;
+ }
+ }
+ }
+ return result;
+ }
+
+ function initSizing(el) {
+ var sizing = sizingPolicy(el);
+ if (!sizing)
+ return;
+
+ var cel = document.getElementById("htmlwidget_container");
+ if (!cel)
+ return;
+
+ if (typeof(sizing.padding) !== "undefined") {
+ document.body.style.margin = "0";
+ document.body.style.padding = paddingToCss(unpackPadding(sizing.padding));
+ }
+
+ if (sizing.fill) {
+ document.body.style.overflow = "hidden";
+ document.body.style.width = "100%";
+ document.body.style.height = "100%";
+ document.documentElement.style.width = "100%";
+ document.documentElement.style.height = "100%";
+ cel.style.position = "absolute";
+ var pad = unpackPadding(sizing.padding);
+ cel.style.top = pad.top + "px";
+ cel.style.right = pad.right + "px";
+ cel.style.bottom = pad.bottom + "px";
+ cel.style.left = pad.left + "px";
+ el.style.width = "100%";
+ el.style.height = "100%";
+
+ return {
+ getWidth: function() { return cel.getBoundingClientRect().width; },
+ getHeight: function() { return cel.getBoundingClientRect().height; }
+ };
+
+ } else {
+ el.style.width = px(sizing.width);
+ el.style.height = px(sizing.height);
+
+ return {
+ getWidth: function() { return cel.getBoundingClientRect().width; },
+ getHeight: function() { return cel.getBoundingClientRect().height; }
+ };
+ }
+ }
+
+ // Default implementations for methods
+ var defaults = {
+ find: function(scope) {
+ return querySelectorAll(scope, "." + this.name);
+ },
+ renderError: function(el, err) {
+ var $el = $(el);
+
+ this.clearError(el);
+
+ // Add all these error classes, as Shiny does
+ var errClass = "shiny-output-error";
+ if (err.type !== null) {
+ // use the classes of the error condition as CSS class names
+ errClass = errClass + " " + $.map(asArray(err.type), function(type) {
+ return errClass + "-" + type;
+ }).join(" ");
+ }
+ errClass = errClass + " htmlwidgets-error";
+
+ // Is el inline or block? If inline or inline-block, just display:none it
+ // and add an inline error.
+ var display = $el.css("display");
+ $el.data("restore-display-mode", display);
+
+ if (display === "inline" || display === "inline-block") {
+ $el.hide();
+ if (err.message !== "") {
+ var errorSpan = $("").addClass(errClass);
+ errorSpan.text(err.message);
+ $el.after(errorSpan);
+ }
+ } else if (display === "block") {
+ // If block, add an error just after the el, set visibility:none on the
+ // el, and position the error to be on top of the el.
+ // Mark it with a unique ID and CSS class so we can remove it later.
+ $el.css("visibility", "hidden");
+ if (err.message !== "") {
+ var errorDiv = $("
").addClass(errClass).css("position", "absolute")
+ .css("top", el.offsetTop)
+ .css("left", el.offsetLeft)
+ // setting width can push out the page size, forcing otherwise
+ // unnecessary scrollbars to appear and making it impossible for
+ // the element to shrink; so use max-width instead
+ .css("maxWidth", el.offsetWidth)
+ .css("height", el.offsetHeight);
+ errorDiv.text(err.message);
+ $el.after(errorDiv);
+
+ // Really dumb way to keep the size/position of the error in sync with
+ // the parent element as the window is resized or whatever.
+ var intId = setInterval(function() {
+ if (!errorDiv[0].parentElement) {
+ clearInterval(intId);
+ return;
+ }
+ errorDiv
+ .css("top", el.offsetTop)
+ .css("left", el.offsetLeft)
+ .css("maxWidth", el.offsetWidth)
+ .css("height", el.offsetHeight);
+ }, 500);
+ }
+ }
+ },
+ clearError: function(el) {
+ var $el = $(el);
+ var display = $el.data("restore-display-mode");
+ $el.data("restore-display-mode", null);
+
+ if (display === "inline" || display === "inline-block") {
+ if (display)
+ $el.css("display", display);
+ $(el.nextSibling).filter(".htmlwidgets-error").remove();
+ } else if (display === "block"){
+ $el.css("visibility", "inherit");
+ $(el.nextSibling).filter(".htmlwidgets-error").remove();
+ }
+ },
+ sizing: {}
+ };
+
+ // Called by widget bindings to register a new type of widget. The definition
+ // object can contain the following properties:
+ // - name (required) - A string indicating the binding name, which will be
+ // used by default as the CSS classname to look for.
+ // - initialize (optional) - A function(el) that will be called once per
+ // widget element; if a value is returned, it will be passed as the third
+ // value to renderValue.
+ // - renderValue (required) - A function(el, data, initValue) that will be
+ // called with data. Static contexts will cause this to be called once per
+ // element; Shiny apps will cause this to be called multiple times per
+ // element, as the data changes.
+ window.HTMLWidgets.widget = function(definition) {
+ if (!definition.name) {
+ throw new Error("Widget must have a name");
+ }
+ if (!definition.type) {
+ throw new Error("Widget must have a type");
+ }
+ // Currently we only support output widgets
+ if (definition.type !== "output") {
+ throw new Error("Unrecognized widget type '" + definition.type + "'");
+ }
+ // TODO: Verify that .name is a valid CSS classname
+
+ // Support new-style instance-bound definitions. Old-style class-bound
+ // definitions have one widget "object" per widget per type/class of
+ // widget; the renderValue and resize methods on such widget objects
+ // take el and instance arguments, because the widget object can't
+ // store them. New-style instance-bound definitions have one widget
+ // object per widget instance; the definition that's passed in doesn't
+ // provide renderValue or resize methods at all, just the single method
+ // factory(el, width, height)
+ // which returns an object that has renderValue(x) and resize(w, h).
+ // This enables a far more natural programming style for the widget
+ // author, who can store per-instance state using either OO-style
+ // instance fields or functional-style closure variables (I guess this
+ // is in contrast to what can only be called C-style pseudo-OO which is
+ // what we required before).
+ if (definition.factory) {
+ definition = createLegacyDefinitionAdapter(definition);
+ }
+
+ if (!definition.renderValue) {
+ throw new Error("Widget must have a renderValue function");
+ }
+
+ // For static rendering (non-Shiny), use a simple widget registration
+ // scheme. We also use this scheme for Shiny apps/documents that also
+ // contain static widgets.
+ window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || [];
+ // Merge defaults into the definition; don't mutate the original definition.
+ var staticBinding = extend({}, defaults, definition);
+ overrideMethod(staticBinding, "find", function(superfunc) {
+ return function(scope) {
+ var results = superfunc(scope);
+ // Filter out Shiny outputs, we only want the static kind
+ return filterByClass(results, "html-widget-output", false);
+ };
+ });
+ window.HTMLWidgets.widgets.push(staticBinding);
+
+ if (shinyMode) {
+ // Shiny is running. Register the definition with an output binding.
+ // The definition itself will not be the output binding, instead
+ // we will make an output binding object that delegates to the
+ // definition. This is because we foolishly used the same method
+ // name (renderValue) for htmlwidgets definition and Shiny bindings
+ // but they actually have quite different semantics (the Shiny
+ // bindings receive data that includes lots of metadata that it
+ // strips off before calling htmlwidgets renderValue). We can't
+ // just ignore the difference because in some widgets it's helpful
+ // to call this.renderValue() from inside of resize(), and if
+ // we're not delegating, then that call will go to the Shiny
+ // version instead of the htmlwidgets version.
+
+ // Merge defaults with definition, without mutating either.
+ var bindingDef = extend({}, defaults, definition);
+
+ // This object will be our actual Shiny binding.
+ var shinyBinding = new Shiny.OutputBinding();
+
+ // With a few exceptions, we'll want to simply use the bindingDef's
+ // version of methods if they are available, otherwise fall back to
+ // Shiny's defaults. NOTE: If Shiny's output bindings gain additional
+ // methods in the future, and we want them to be overrideable by
+ // HTMLWidget binding definitions, then we'll need to add them to this
+ // list.
+ delegateMethod(shinyBinding, bindingDef, "getId");
+ delegateMethod(shinyBinding, bindingDef, "onValueChange");
+ delegateMethod(shinyBinding, bindingDef, "onValueError");
+ delegateMethod(shinyBinding, bindingDef, "renderError");
+ delegateMethod(shinyBinding, bindingDef, "clearError");
+ delegateMethod(shinyBinding, bindingDef, "showProgress");
+
+ // The find, renderValue, and resize are handled differently, because we
+ // want to actually decorate the behavior of the bindingDef methods.
+
+ shinyBinding.find = function(scope) {
+ var results = bindingDef.find(scope);
+
+ // Only return elements that are Shiny outputs, not static ones
+ var dynamicResults = results.filter(".html-widget-output");
+
+ // It's possible that whatever caused Shiny to think there might be
+ // new dynamic outputs, also caused there to be new static outputs.
+ // Since there might be lots of different htmlwidgets bindings, we
+ // schedule execution for later--no need to staticRender multiple
+ // times.
+ if (results.length !== dynamicResults.length)
+ scheduleStaticRender();
+
+ return dynamicResults;
+ };
+
+ // Wrap renderValue to handle initialization, which unfortunately isn't
+ // supported natively by Shiny at the time of this writing.
+
+ shinyBinding.renderValue = function(el, data) {
+ Shiny.renderDependencies(data.deps);
+ // Resolve strings marked as javascript literals to objects
+ if (!(data.evals instanceof Array)) data.evals = [data.evals];
+ for (var i = 0; data.evals && i < data.evals.length; i++) {
+ window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]);
+ }
+ if (!bindingDef.renderOnNullValue) {
+ if (data.x === null) {
+ el.style.visibility = "hidden";
+ return;
+ } else {
+ el.style.visibility = "inherit";
+ }
+ }
+ if (!elementData(el, "initialized")) {
+ initSizing(el);
+
+ elementData(el, "initialized", true);
+ if (bindingDef.initialize) {
+ var rect = el.getBoundingClientRect();
+ var result = bindingDef.initialize(el, rect.width, rect.height);
+ elementData(el, "init_result", result);
+ }
+ }
+ bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
+ evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
+ };
+
+ // Only override resize if bindingDef implements it
+ if (bindingDef.resize) {
+ shinyBinding.resize = function(el, width, height) {
+ // Shiny can call resize before initialize/renderValue have been
+ // called, which doesn't make sense for widgets.
+ if (elementData(el, "initialized")) {
+ bindingDef.resize(el, width, height, elementData(el, "init_result"));
+ }
+ };
+ }
+
+ Shiny.outputBindings.register(shinyBinding, bindingDef.name);
+ }
+ };
+
+ var scheduleStaticRenderTimerId = null;
+ function scheduleStaticRender() {
+ if (!scheduleStaticRenderTimerId) {
+ scheduleStaticRenderTimerId = setTimeout(function() {
+ scheduleStaticRenderTimerId = null;
+ window.HTMLWidgets.staticRender();
+ }, 1);
+ }
+ }
+
+ // Render static widgets after the document finishes loading
+ // Statically render all elements that are of this widget's class
+ window.HTMLWidgets.staticRender = function() {
+ var bindings = window.HTMLWidgets.widgets || [];
+ forEach(bindings, function(binding) {
+ var matches = binding.find(document.documentElement);
+ forEach(matches, function(el) {
+ var sizeObj = initSizing(el, binding);
+
+ var getSize = function(el) {
+ if (sizeObj) {
+ return {w: sizeObj.getWidth(), h: sizeObj.getHeight()}
+ } else {
+ var rect = el.getBoundingClientRect();
+ return {w: rect.width, h: rect.height}
+ }
+ };
+
+ if (hasClass(el, "html-widget-static-bound"))
+ return;
+ el.className = el.className + " html-widget-static-bound";
+
+ var initResult;
+ if (binding.initialize) {
+ var size = getSize(el);
+ initResult = binding.initialize(el, size.w, size.h);
+ elementData(el, "init_result", initResult);
+ }
+
+ if (binding.resize) {
+ var lastSize = getSize(el);
+ var resizeHandler = function(e) {
+ var size = getSize(el);
+ if (size.w === 0 && size.h === 0)
+ return;
+ if (size.w === lastSize.w && size.h === lastSize.h)
+ return;
+ lastSize = size;
+ binding.resize(el, size.w, size.h, initResult);
+ };
+
+ on(window, "resize", resizeHandler);
+
+ // This is needed for cases where we're running in a Shiny
+ // app, but the widget itself is not a Shiny output, but
+ // rather a simple static widget. One example of this is
+ // an rmarkdown document that has runtime:shiny and widget
+ // that isn't in a render function. Shiny only knows to
+ // call resize handlers for Shiny outputs, not for static
+ // widgets, so we do it ourselves.
+ if (window.jQuery) {
+ window.jQuery(document).on(
+ "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets",
+ resizeHandler
+ );
+ window.jQuery(document).on(
+ "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets",
+ resizeHandler
+ );
+ }
+
+ // This is needed for the specific case of ioslides, which
+ // flips slides between display:none and display:block.
+ // Ideally we would not have to have ioslide-specific code
+ // here, but rather have ioslides raise a generic event,
+ // but the rmarkdown package just went to CRAN so the
+ // window to getting that fixed may be long.
+ if (window.addEventListener) {
+ // It's OK to limit this to window.addEventListener
+ // browsers because ioslides itself only supports
+ // such browsers.
+ on(document, "slideenter", resizeHandler);
+ on(document, "slideleave", resizeHandler);
+ }
+ }
+
+ var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']");
+ if (scriptData) {
+ var data = JSON.parse(scriptData.textContent || scriptData.text);
+ // Resolve strings marked as javascript literals to objects
+ if (!(data.evals instanceof Array)) data.evals = [data.evals];
+ for (var k = 0; data.evals && k < data.evals.length; k++) {
+ window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]);
+ }
+ binding.renderValue(el, data.x, initResult);
+ evalAndRun(data.jsHooks.render, initResult, [el, data.x]);
+ }
+ });
+ });
+
+ invokePostRenderHandlers();
+ }
+
+
+ function has_jQuery3() {
+ if (!window.jQuery) {
+ return false;
+ }
+ var $version = window.jQuery.fn.jquery;
+ var $major_version = parseInt($version.split(".")[0]);
+ return $major_version >= 3;
+ }
+
+ /*
+ / Shiny 1.4 bumped jQuery from 1.x to 3.x which means jQuery's
+ / on-ready handler (i.e., $(fn)) is now asyncronous (i.e., it now
+ / really means $(setTimeout(fn)).
+ / https://jquery.com/upgrade-guide/3.0/#breaking-change-document-ready-handlers-are-now-asynchronous
+ /
+ / Since Shiny uses $() to schedule initShiny, shiny>=1.4 calls initShiny
+ / one tick later than it did before, which means staticRender() is
+ / called renderValue() earlier than (advanced) widget authors might be expecting.
+ / https://github.com/rstudio/shiny/issues/2630
+ /
+ / For a concrete example, leaflet has some methods (e.g., updateBounds)
+ / which reference Shiny methods registered in initShiny (e.g., setInputValue).
+ / Since leaflet is privy to this life-cycle, it knows to use setTimeout() to
+ / delay execution of those methods (until Shiny methods are ready)
+ / https://github.com/rstudio/leaflet/blob/18ec981/javascript/src/index.js#L266-L268
+ /
+ / Ideally widget authors wouldn't need to use this setTimeout() hack that
+ / leaflet uses to call Shiny methods on a staticRender(). In the long run,
+ / the logic initShiny should be broken up so that method registration happens
+ / right away, but binding happens later.
+ */
+ function maybeStaticRenderLater() {
+ if (shinyMode && has_jQuery3()) {
+ window.jQuery(window.HTMLWidgets.staticRender);
+ } else {
+ window.HTMLWidgets.staticRender();
+ }
+ }
+
+ if (document.addEventListener) {
+ document.addEventListener("DOMContentLoaded", function() {
+ document.removeEventListener("DOMContentLoaded", arguments.callee, false);
+ maybeStaticRenderLater();
+ }, false);
+ } else if (document.attachEvent) {
+ document.attachEvent("onreadystatechange", function() {
+ if (document.readyState === "complete") {
+ document.detachEvent("onreadystatechange", arguments.callee);
+ maybeStaticRenderLater();
+ }
+ });
+ }
+
+
+ window.HTMLWidgets.getAttachmentUrl = function(depname, key) {
+ // If no key, default to the first item
+ if (typeof(key) === "undefined")
+ key = 1;
+
+ var link = document.getElementById(depname + "-" + key + "-attachment");
+ if (!link) {
+ throw new Error("Attachment " + depname + "/" + key + " not found in document");
+ }
+ return link.getAttribute("href");
+ };
+
+ window.HTMLWidgets.dataframeToD3 = function(df) {
+ var names = [];
+ var length;
+ for (var name in df) {
+ if (df.hasOwnProperty(name))
+ names.push(name);
+ if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") {
+ throw new Error("All fields must be arrays");
+ } else if (typeof(length) !== "undefined" && length !== df[name].length) {
+ throw new Error("All fields must be arrays of the same length");
+ }
+ length = df[name].length;
+ }
+ var results = [];
+ var item;
+ for (var row = 0; row < length; row++) {
+ item = {};
+ for (var col = 0; col < names.length; col++) {
+ item[names[col]] = df[names[col]][row];
+ }
+ results.push(item);
+ }
+ return results;
+ };
+
+ window.HTMLWidgets.transposeArray2D = function(array) {
+ if (array.length === 0) return array;
+ var newArray = array[0].map(function(col, i) {
+ return array.map(function(row) {
+ return row[i]
+ })
+ });
+ return newArray;
+ };
+ // Split value at splitChar, but allow splitChar to be escaped
+ // using escapeChar. Any other characters escaped by escapeChar
+ // will be included as usual (including escapeChar itself).
+ function splitWithEscape(value, splitChar, escapeChar) {
+ var results = [];
+ var escapeMode = false;
+ var currentResult = "";
+ for (var pos = 0; pos < value.length; pos++) {
+ if (!escapeMode) {
+ if (value[pos] === splitChar) {
+ results.push(currentResult);
+ currentResult = "";
+ } else if (value[pos] === escapeChar) {
+ escapeMode = true;
+ } else {
+ currentResult += value[pos];
+ }
+ } else {
+ currentResult += value[pos];
+ escapeMode = false;
+ }
+ }
+ if (currentResult !== "") {
+ results.push(currentResult);
+ }
+ return results;
+ }
+ // Function authored by Yihui/JJ Allaire
+ window.HTMLWidgets.evaluateStringMember = function(o, member) {
+ var parts = splitWithEscape(member, '.', '\\');
+ for (var i = 0, l = parts.length; i < l; i++) {
+ var part = parts[i];
+ // part may be a character or 'numeric' member name
+ if (o !== null && typeof o === "object" && part in o) {
+ if (i == (l - 1)) { // if we are at the end of the line then evalulate
+ if (typeof o[part] === "string")
+ o[part] = tryEval(o[part]);
+ } else { // otherwise continue to next embedded object
+ o = o[part];
+ }
+ }
+ }
+ };
+
+ // Retrieve the HTMLWidget instance (i.e. the return value of an
+ // HTMLWidget binding's initialize() or factory() function)
+ // associated with an element, or null if none.
+ window.HTMLWidgets.getInstance = function(el) {
+ return elementData(el, "init_result");
+ };
+
+ // Finds the first element in the scope that matches the selector,
+ // and returns the HTMLWidget instance (i.e. the return value of
+ // an HTMLWidget binding's initialize() or factory() function)
+ // associated with that element, if any. If no element matches the
+ // selector, or the first matching element has no HTMLWidget
+ // instance associated with it, then null is returned.
+ //
+ // The scope argument is optional, and defaults to window.document.
+ window.HTMLWidgets.find = function(scope, selector) {
+ if (arguments.length == 1) {
+ selector = scope;
+ scope = document;
+ }
+
+ var el = scope.querySelector(selector);
+ if (el === null) {
+ return null;
+ } else {
+ return window.HTMLWidgets.getInstance(el);
+ }
+ };
+
+ // Finds all elements in the scope that match the selector, and
+ // returns the HTMLWidget instances (i.e. the return values of
+ // an HTMLWidget binding's initialize() or factory() function)
+ // associated with the elements, in an array. If elements that
+ // match the selector don't have an associated HTMLWidget
+ // instance, the returned array will contain nulls.
+ //
+ // The scope argument is optional, and defaults to window.document.
+ window.HTMLWidgets.findAll = function(scope, selector) {
+ if (arguments.length == 1) {
+ selector = scope;
+ scope = document;
+ }
+
+ var nodes = scope.querySelectorAll(selector);
+ var results = [];
+ for (var i = 0; i < nodes.length; i++) {
+ results.push(window.HTMLWidgets.getInstance(nodes[i]));
+ }
+ return results;
+ };
+
+ var postRenderHandlers = [];
+ function invokePostRenderHandlers() {
+ while (postRenderHandlers.length) {
+ var handler = postRenderHandlers.shift();
+ if (handler) {
+ handler();
+ }
+ }
+ }
+
+ // Register the given callback function to be invoked after the
+ // next time static widgets are rendered.
+ window.HTMLWidgets.addPostRenderHandler = function(callback) {
+ postRenderHandlers.push(callback);
+ };
+
+ // Takes a new-style instance-bound definition, and returns an
+ // old-style class-bound definition. This saves us from having
+ // to rewrite all the logic in this file to accomodate both
+ // types of definitions.
+ function createLegacyDefinitionAdapter(defn) {
+ var result = {
+ name: defn.name,
+ type: defn.type,
+ initialize: function(el, width, height) {
+ return defn.factory(el, width, height);
+ },
+ renderValue: function(el, x, instance) {
+ return instance.renderValue(x);
+ },
+ resize: function(el, width, height, instance) {
+ return instance.resize(width, height);
+ }
+ };
+
+ if (defn.find)
+ result.find = defn.find;
+ if (defn.renderError)
+ result.renderError = defn.renderError;
+ if (defn.clearError)
+ result.clearError = defn.clearError;
+
+ return result;
+ }
+})();
diff --git a/docs/articles/TidyConsultant.html b/docs/articles/TidyConsultant.html
index ca8f136..0f16597 100644
--- a/docs/articles/TidyConsultant.html
+++ b/docs/articles/TidyConsultant.html
@@ -6,7 +6,7 @@
TidyConsultant • TidyConsultant
-
+
@@ -39,7 +39,7 @@
TidyConsultant
- 0.1.0
+ 0.1.1
@@ -87,10 +87,8 @@
-
-
-
-
+
+
TidyConsultant
@@ -132,14 +130,13 @@
Analyze data properties with vali
insurance%>%diagnose_numeric()#> # A tibble: 4 × 11
-#> variab…¹ zeros minus infs min mean max |x|<1…² integ…³ mode mode_…⁴
-#> <chr><int><int><int><dbl><dbl><dbl><dbl><dbl><dbl><dbl>
-#> 1 age 0 0 0 18 3.92e1 6.4 e1 0 1 e+0 18 0.0516
-#> 2 bmi 0 0 0 16.0 3.07e1 5.31e1 0 2.24e-2 32.3 0.00972
-#> 3 children 574 0 0 0 1.09e0 5 e0 0.429 1 e+0 0 0.429
-#> 4 charges 0 0 0 1122. 1.33e4 6.38e4 0 7.47e-41640. 0.00149
-#> # … with abbreviated variable names ¹variables, ²`|x|<1 (ratio)`,
-#> # ³integer_ratio, ⁴mode_ratio
+#> variables zeros minus infs min mean max `|x|<1 (ratio)` integer_ratio
+#> <chr><int><int><int><dbl><dbl><dbl><dbl><dbl>
+#> 1 age 0 0 0 18 3.92e1 6.4 e1 0 1
+#> 2 bmi 0 0 0 16.0 3.07e1 5.31e1 0 0.0224
+#> 3 children 574 0 0 0 1.09e0 5 e0 0.429 1
+#> 4 charges 0 0 0 1122. 1.33e4 6.38e4 0 0.000747
+#> # ℹ 2 more variables: mode <dbl>, mode_ratio <dbl>
Analyze the relationship between categorical and continuous
variables
@@ -211,44 +208,42 @@
Analyze data relationships wi
anovas1%>%print(n =50)#> # A tibble: 32 × 12
-#> target predictor level estimate targe…¹ n std.e…² level_p…³ level…⁴
-#> <chr><chr><chr><dbl><dbl><int><dbl><dbl><chr>
-#> 1 age region (Interce… 3.93e+1 3.93e1 324 7.81e-1 4.75e-310"***"
-#> 2 age region northwest -7.16e-2 3.92e1 325 1.10e+0 9.48e- 1""
-#> 3 age region southeast -3.29e-1 3.89e1 364 1.07e+0 7.59e- 1""
-#> 4 age region southwest 1.87e-1 3.95e1 325 1.10e+0 8.66e- 1""
-#> 5 age sex (Interce… 3.95e+1 3.95e1 662 5.46e-1 0 "***"
-#> 6 age sex male -5.86e-1 3.89e1 676 7.68e-1 4.46e- 1""
-#> 7 age smoker (Interce… 3.94e+1 3.94e1 1064 4.31e-1 0 "***"
-#> 8 age smoker yes -8.71e-1 3.85e1 274 9.52e-1 3.60e- 1""
-#> 9 bmi region (Interce… 2.92e+1 2.92e1 324 3.25e-1 0 "***"
-#> 10 bmi region northwest 2.63e-2 2.92e1 325 4.59e-1 9.54e- 1""
-#> 11 bmi region southeast 4.18e+0 3.34e1 364 4.47e-1 3.28e- 20"***"
-#> 12 bmi region southwest 1.42e+0 3.06e1 325 4.59e-1 1.99e- 3"**"
-#> 13 bmi sex (Interce… 3.04e+1 3.04e1 662 2.37e-1 0 "***"
-#> 14 bmi sex male 5.65e-1 3.09e1 676 3.33e-1 9.00e- 2"."
-#> 15 bmi smoker (Interce… 3.07e+1 3.07e1 1064 1.87e-1 0 "***"
-#> 16 bmi smoker yes 5.67e-2 3.07e1 274 4.13e-1 8.91e- 1""
-#> 17 charges region (Interce… 1.34e+4 1.34e4 324 6.71e+2 7.67e- 78"***"
-#> 18 charges region northwest -9.89e+2 1.24e4 325 9.49e+2 2.97e- 1""
-#> 19 charges region southeast 1.33e+3 1.47e4 364 9.23e+2 1.50e- 1""
-#> 20 charges region southwest -1.06e+3 1.23e4 325 9.49e+2 2.64e- 1""
-#> 21 charges sex (Interce… 1.26e+4 1.26e4 662 4.70e+2 1.63e-126"***"
-#> 22 charges sex male 1.39e+3 1.40e4 676 6.61e+2 3.61e- 2"*"
-#> 23 charges smoker (Interce… 8.43e+3 8.43e3 1064 2.29e+2 1.58e-205"***"
-#> 24 charges smoker yes 2.36e+4 3.21e4 274 5.06e+2 8.27e-283"***"
-#> 25 children region (Interce… 1.05e+0 1.05e0 324 6.70e-2 1.26e- 50"***"
-#> 26 children region northwest 1.01e-1 1.15e0 325 9.47e-2 2.84e- 1""
-#> 27 children region southeast 3.15e-3 1.05e0 364 9.21e-2 9.73e- 1""
-#> 28 children region southwest 9.52e-2 1.14e0 325 9.47e-2 3.15e- 1""
-#> 29 children sex (Interce… 1.07e+0 1.07e0 662 4.69e-2 2.66e- 98"***"
-#> 30 children sex male 4.14e-2 1.12e0 676 6.59e-2 5.30e- 1""
-#> 31 children smoker (Interce… 1.09e+0 1.09e0 1064 3.70e-2 1.25e-147"***"
-#> 32 children smoker yes 2.29e-2 1.11e0 274 8.17e-2 7.79e- 1""
-#> # … with 3 more variables: predictor_p.value <dbl>,
-#> # predictor_significance <chr>, conclusion <chr>, and abbreviated variable
-#> # names ¹target_mean, ²std.error, ³level_p.value, ⁴level_significance
-#> # ℹ Use `colnames()` to see all variable names
+#> target predictor level estimate target_mean n std.error level_p.value
+#> <chr><chr><chr><dbl><dbl><int><dbl><dbl>
+#> 1 age region (Inter… 3.93e+1 39.3 324 0.781 4.75e-310
+#> 2 age region northw… -7.16e-2 39.2 325 1.10 9.48e- 1
+#> 3 age region southe… -3.29e-1 38.9 364 1.07 7.59e- 1
+#> 4 age region southw… 1.87e-1 39.5 325 1.10 8.66e- 1
+#> 5 age sex (Inter… 3.95e+1 39.5 662 0.546 0
+#> 6 age sex male -5.86e-1 38.9 676 0.768 4.46e- 1
+#> 7 age smoker (Inter… 3.94e+1 39.4 1064 0.431 0
+#> 8 age smoker yes -8.71e-1 38.5 274 0.952 3.60e- 1
+#> 9 bmi region (Inter… 2.92e+1 29.2 324 0.325 0
+#> 10 bmi region northw… 2.63e-2 29.2 325 0.459 9.54e- 1
+#> 11 bmi region southe… 4.18e+0 33.4 364 0.447 3.28e- 20
+#> 12 bmi region southw… 1.42e+0 30.6 325 0.459 1.99e- 3
+#> 13 bmi sex (Inter… 3.04e+1 30.4 662 0.237 0
+#> 14 bmi sex male 5.65e-1 30.9 676 0.333 9.00e- 2
+#> 15 bmi smoker (Inter… 3.07e+1 30.7 1064 0.187 0
+#> 16 bmi smoker yes 5.67e-2 30.7 274 0.413 8.91e- 1
+#> 17 charges region (Inter… 1.34e+4 13406. 324 671. 7.67e- 78
+#> 18 charges region northw… -9.89e+2 12418. 325 949. 2.97e- 1
+#> 19 charges region southe… 1.33e+3 14735. 364 923. 1.50e- 1
+#> 20 charges region southw… -1.06e+3 12347. 325 949. 2.64e- 1
+#> 21 charges sex (Inter… 1.26e+4 12570. 662 470. 1.63e-126
+#> 22 charges sex male 1.39e+3 13957. 676 661. 3.61e- 2
+#> 23 charges smoker (Inter… 8.43e+3 8434. 1064 229. 1.58e-205
+#> 24 charges smoker yes 2.36e+4 32050. 274 506. 8.27e-283
+#> 25 children region (Inter… 1.05e+0 1.05 324 0.0670 1.26e- 50
+#> 26 children region northw… 1.01e-1 1.15 325 0.0947 2.84e- 1
+#> 27 children region southe… 3.15e-3 1.05 364 0.0921 9.73e- 1
+#> 28 children region southw… 9.52e-2 1.14 325 0.0947 3.15e- 1
+#> 29 children sex (Inter… 1.07e+0 1.07 662 0.0469 2.66e- 98
+#> 30 children sex male 4.14e-2 1.12 676 0.0659 5.30e- 1
+#> 31 children smoker (Inter… 1.09e+0 1.09 1064 0.0370 1.25e-147
+#> 32 children smoker yes 2.29e-2 1.11 274 0.0817 7.79e- 1
+#> # ℹ 4 more variables: level_significance <chr>, predictor_p.value <dbl>,
+#> # predictor_significance <chr>, conclusion <chr>
Use the sparse option to show only the most significant effects
@@ -258,14 +253,14 @@
Analyze data relationships wi
anovas2%>%print(n =50)#> # A tibble: 5 × 8
-#> target predictor level estimate target_mean n level_p.value level_…¹
-#> <chr><chr><chr><dbl><dbl><int><dbl><chr>
-#> 1 bmi region southeast 4.18 33.4 364 3.28e- 20 ***
-#> 2 bmi region southwest 1.42 30.6 325 1.99e- 3 **
-#> 3 bmi sex male 0.565 30.9 676 9.00e- 2 .
-#> 4 charges sex male 1387. 13957. 676 3.61e- 2 *
-#> 5 charges smoker yes 23616. 32050. 274 8.27e-283 ***
-#> # … with abbreviated variable name ¹level_significance
+#> target predictor level estimate target_mean n level_p.value
+#> <chr><chr><chr><dbl><dbl><int><dbl>
+#> 1 bmi region southeast 4.18 33.4 364 3.28e- 20
+#> 2 bmi region southwest 1.42 30.6 325 1.99e- 3
+#> 3 bmi sex male 0.565 30.9 676 9.00e- 2
+#> 4 charges sex male 1387. 13957. 676 3.61e- 2
+#> 5 charges smoker yes 23616. 32050. 274 8.27e-283
+#> # ℹ 1 more variable: level_significance <chr>
From this we can conclude that smokers and males incur higher
insurance charges. It may be beneficial to explore some interaction
effects, considering that BMI’s effect on charges will be
@@ -287,138 +282,56 @@
Now we can create a basic model using tidy_xgboost.
Built in heuristic will automatically recognize this as a binary
classification task. We can tweak some parameters to add some
regularization and increase the number of trees. Xgboost will
automatically output feature importance on the training set, and a
measure of accuracy tested on a validation set.
diff --git a/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-1.png b/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-1.png
index a912a92..28d6511 100644
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diff --git a/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-2.png b/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-2.png
index c464bbb..cb5b091 100644
Binary files a/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-2.png and b/docs/articles/TidyConsultant_files/figure-html/unnamed-chunk-19-2.png differ
diff --git a/docs/articles/TidyConsultant_files/htmltools-fill-0.5.8.1/fill.css b/docs/articles/TidyConsultant_files/htmltools-fill-0.5.8.1/fill.css
new file mode 100644
index 0000000..841ea9d
--- /dev/null
+++ b/docs/articles/TidyConsultant_files/htmltools-fill-0.5.8.1/fill.css
@@ -0,0 +1,21 @@
+@layer htmltools {
+ .html-fill-container {
+ display: flex;
+ flex-direction: column;
+ /* Prevent the container from expanding vertically or horizontally beyond its
+ parent's constraints. */
+ min-height: 0;
+ min-width: 0;
+ }
+ .html-fill-container > .html-fill-item {
+ /* Fill items can grow and shrink freely within
+ available vertical space in fillable container */
+ flex: 1 1 auto;
+ min-height: 0;
+ min-width: 0;
+ }
+ .html-fill-container > :not(.html-fill-item) {
+ /* Prevent shrinking or growing of non-fill items */
+ flex: 0 0 auto;
+ }
+}
diff --git a/docs/articles/TidyConsultant_files/htmlwidgets-1.6.4/htmlwidgets.js b/docs/articles/TidyConsultant_files/htmlwidgets-1.6.4/htmlwidgets.js
new file mode 100644
index 0000000..1067d02
--- /dev/null
+++ b/docs/articles/TidyConsultant_files/htmlwidgets-1.6.4/htmlwidgets.js
@@ -0,0 +1,901 @@
+(function() {
+ // If window.HTMLWidgets is already defined, then use it; otherwise create a
+ // new object. This allows preceding code to set options that affect the
+ // initialization process (though none currently exist).
+ window.HTMLWidgets = window.HTMLWidgets || {};
+
+ // See if we're running in a viewer pane. If not, we're in a web browser.
+ var viewerMode = window.HTMLWidgets.viewerMode =
+ /\bviewer_pane=1\b/.test(window.location);
+
+ // See if we're running in Shiny mode. If not, it's a static document.
+ // Note that static widgets can appear in both Shiny and static modes, but
+ // obviously, Shiny widgets can only appear in Shiny apps/documents.
+ var shinyMode = window.HTMLWidgets.shinyMode =
+ typeof(window.Shiny) !== "undefined" && !!window.Shiny.outputBindings;
+
+ // We can't count on jQuery being available, so we implement our own
+ // version if necessary.
+ function querySelectorAll(scope, selector) {
+ if (typeof(jQuery) !== "undefined" && scope instanceof jQuery) {
+ return scope.find(selector);
+ }
+ if (scope.querySelectorAll) {
+ return scope.querySelectorAll(selector);
+ }
+ }
+
+ function asArray(value) {
+ if (value === null)
+ return [];
+ if ($.isArray(value))
+ return value;
+ return [value];
+ }
+
+ // Implement jQuery's extend
+ function extend(target /*, ... */) {
+ if (arguments.length == 1) {
+ return target;
+ }
+ for (var i = 1; i < arguments.length; i++) {
+ var source = arguments[i];
+ for (var prop in source) {
+ if (source.hasOwnProperty(prop)) {
+ target[prop] = source[prop];
+ }
+ }
+ }
+ return target;
+ }
+
+ // IE8 doesn't support Array.forEach.
+ function forEach(values, callback, thisArg) {
+ if (values.forEach) {
+ values.forEach(callback, thisArg);
+ } else {
+ for (var i = 0; i < values.length; i++) {
+ callback.call(thisArg, values[i], i, values);
+ }
+ }
+ }
+
+ // Replaces the specified method with the return value of funcSource.
+ //
+ // Note that funcSource should not BE the new method, it should be a function
+ // that RETURNS the new method. funcSource receives a single argument that is
+ // the overridden method, it can be called from the new method. The overridden
+ // method can be called like a regular function, it has the target permanently
+ // bound to it so "this" will work correctly.
+ function overrideMethod(target, methodName, funcSource) {
+ var superFunc = target[methodName] || function() {};
+ var superFuncBound = function() {
+ return superFunc.apply(target, arguments);
+ };
+ target[methodName] = funcSource(superFuncBound);
+ }
+
+ // Add a method to delegator that, when invoked, calls
+ // delegatee.methodName. If there is no such method on
+ // the delegatee, but there was one on delegator before
+ // delegateMethod was called, then the original version
+ // is invoked instead.
+ // For example:
+ //
+ // var a = {
+ // method1: function() { console.log('a1'); }
+ // method2: function() { console.log('a2'); }
+ // };
+ // var b = {
+ // method1: function() { console.log('b1'); }
+ // };
+ // delegateMethod(a, b, "method1");
+ // delegateMethod(a, b, "method2");
+ // a.method1();
+ // a.method2();
+ //
+ // The output would be "b1", "a2".
+ function delegateMethod(delegator, delegatee, methodName) {
+ var inherited = delegator[methodName];
+ delegator[methodName] = function() {
+ var target = delegatee;
+ var method = delegatee[methodName];
+
+ // The method doesn't exist on the delegatee. Instead,
+ // call the method on the delegator, if it exists.
+ if (!method) {
+ target = delegator;
+ method = inherited;
+ }
+
+ if (method) {
+ return method.apply(target, arguments);
+ }
+ };
+ }
+
+ // Implement a vague facsimilie of jQuery's data method
+ function elementData(el, name, value) {
+ if (arguments.length == 2) {
+ return el["htmlwidget_data_" + name];
+ } else if (arguments.length == 3) {
+ el["htmlwidget_data_" + name] = value;
+ return el;
+ } else {
+ throw new Error("Wrong number of arguments for elementData: " +
+ arguments.length);
+ }
+ }
+
+ // http://stackoverflow.com/questions/3446170/escape-string-for-use-in-javascript-regex
+ function escapeRegExp(str) {
+ return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&");
+ }
+
+ function hasClass(el, className) {
+ var re = new RegExp("\\b" + escapeRegExp(className) + "\\b");
+ return re.test(el.className);
+ }
+
+ // elements - array (or array-like object) of HTML elements
+ // className - class name to test for
+ // include - if true, only return elements with given className;
+ // if false, only return elements *without* given className
+ function filterByClass(elements, className, include) {
+ var results = [];
+ for (var i = 0; i < elements.length; i++) {
+ if (hasClass(elements[i], className) == include)
+ results.push(elements[i]);
+ }
+ return results;
+ }
+
+ function on(obj, eventName, func) {
+ if (obj.addEventListener) {
+ obj.addEventListener(eventName, func, false);
+ } else if (obj.attachEvent) {
+ obj.attachEvent(eventName, func);
+ }
+ }
+
+ function off(obj, eventName, func) {
+ if (obj.removeEventListener)
+ obj.removeEventListener(eventName, func, false);
+ else if (obj.detachEvent) {
+ obj.detachEvent(eventName, func);
+ }
+ }
+
+ // Translate array of values to top/right/bottom/left, as usual with
+ // the "padding" CSS property
+ // https://developer.mozilla.org/en-US/docs/Web/CSS/padding
+ function unpackPadding(value) {
+ if (typeof(value) === "number")
+ value = [value];
+ if (value.length === 1) {
+ return {top: value[0], right: value[0], bottom: value[0], left: value[0]};
+ }
+ if (value.length === 2) {
+ return {top: value[0], right: value[1], bottom: value[0], left: value[1]};
+ }
+ if (value.length === 3) {
+ return {top: value[0], right: value[1], bottom: value[2], left: value[1]};
+ }
+ if (value.length === 4) {
+ return {top: value[0], right: value[1], bottom: value[2], left: value[3]};
+ }
+ }
+
+ // Convert an unpacked padding object to a CSS value
+ function paddingToCss(paddingObj) {
+ return paddingObj.top + "px " + paddingObj.right + "px " + paddingObj.bottom + "px " + paddingObj.left + "px";
+ }
+
+ // Makes a number suitable for CSS
+ function px(x) {
+ if (typeof(x) === "number")
+ return x + "px";
+ else
+ return x;
+ }
+
+ // Retrieves runtime widget sizing information for an element.
+ // The return value is either null, or an object with fill, padding,
+ // defaultWidth, defaultHeight fields.
+ function sizingPolicy(el) {
+ var sizingEl = document.querySelector("script[data-for='" + el.id + "'][type='application/htmlwidget-sizing']");
+ if (!sizingEl)
+ return null;
+ var sp = JSON.parse(sizingEl.textContent || sizingEl.text || "{}");
+ if (viewerMode) {
+ return sp.viewer;
+ } else {
+ return sp.browser;
+ }
+ }
+
+ // @param tasks Array of strings (or falsy value, in which case no-op).
+ // Each element must be a valid JavaScript expression that yields a
+ // function. Or, can be an array of objects with "code" and "data"
+ // properties; in this case, the "code" property should be a string
+ // of JS that's an expr that yields a function, and "data" should be
+ // an object that will be added as an additional argument when that
+ // function is called.
+ // @param target The object that will be "this" for each function
+ // execution.
+ // @param args Array of arguments to be passed to the functions. (The
+ // same arguments will be passed to all functions.)
+ function evalAndRun(tasks, target, args) {
+ if (tasks) {
+ forEach(tasks, function(task) {
+ var theseArgs = args;
+ if (typeof(task) === "object") {
+ theseArgs = theseArgs.concat([task.data]);
+ task = task.code;
+ }
+ var taskFunc = tryEval(task);
+ if (typeof(taskFunc) !== "function") {
+ throw new Error("Task must be a function! Source:\n" + task);
+ }
+ taskFunc.apply(target, theseArgs);
+ });
+ }
+ }
+
+ // Attempt eval() both with and without enclosing in parentheses.
+ // Note that enclosing coerces a function declaration into
+ // an expression that eval() can parse
+ // (otherwise, a SyntaxError is thrown)
+ function tryEval(code) {
+ var result = null;
+ try {
+ result = eval("(" + code + ")");
+ } catch(error) {
+ if (!(error instanceof SyntaxError)) {
+ throw error;
+ }
+ try {
+ result = eval(code);
+ } catch(e) {
+ if (e instanceof SyntaxError) {
+ throw error;
+ } else {
+ throw e;
+ }
+ }
+ }
+ return result;
+ }
+
+ function initSizing(el) {
+ var sizing = sizingPolicy(el);
+ if (!sizing)
+ return;
+
+ var cel = document.getElementById("htmlwidget_container");
+ if (!cel)
+ return;
+
+ if (typeof(sizing.padding) !== "undefined") {
+ document.body.style.margin = "0";
+ document.body.style.padding = paddingToCss(unpackPadding(sizing.padding));
+ }
+
+ if (sizing.fill) {
+ document.body.style.overflow = "hidden";
+ document.body.style.width = "100%";
+ document.body.style.height = "100%";
+ document.documentElement.style.width = "100%";
+ document.documentElement.style.height = "100%";
+ cel.style.position = "absolute";
+ var pad = unpackPadding(sizing.padding);
+ cel.style.top = pad.top + "px";
+ cel.style.right = pad.right + "px";
+ cel.style.bottom = pad.bottom + "px";
+ cel.style.left = pad.left + "px";
+ el.style.width = "100%";
+ el.style.height = "100%";
+
+ return {
+ getWidth: function() { return cel.getBoundingClientRect().width; },
+ getHeight: function() { return cel.getBoundingClientRect().height; }
+ };
+
+ } else {
+ el.style.width = px(sizing.width);
+ el.style.height = px(sizing.height);
+
+ return {
+ getWidth: function() { return cel.getBoundingClientRect().width; },
+ getHeight: function() { return cel.getBoundingClientRect().height; }
+ };
+ }
+ }
+
+ // Default implementations for methods
+ var defaults = {
+ find: function(scope) {
+ return querySelectorAll(scope, "." + this.name);
+ },
+ renderError: function(el, err) {
+ var $el = $(el);
+
+ this.clearError(el);
+
+ // Add all these error classes, as Shiny does
+ var errClass = "shiny-output-error";
+ if (err.type !== null) {
+ // use the classes of the error condition as CSS class names
+ errClass = errClass + " " + $.map(asArray(err.type), function(type) {
+ return errClass + "-" + type;
+ }).join(" ");
+ }
+ errClass = errClass + " htmlwidgets-error";
+
+ // Is el inline or block? If inline or inline-block, just display:none it
+ // and add an inline error.
+ var display = $el.css("display");
+ $el.data("restore-display-mode", display);
+
+ if (display === "inline" || display === "inline-block") {
+ $el.hide();
+ if (err.message !== "") {
+ var errorSpan = $("").addClass(errClass);
+ errorSpan.text(err.message);
+ $el.after(errorSpan);
+ }
+ } else if (display === "block") {
+ // If block, add an error just after the el, set visibility:none on the
+ // el, and position the error to be on top of the el.
+ // Mark it with a unique ID and CSS class so we can remove it later.
+ $el.css("visibility", "hidden");
+ if (err.message !== "") {
+ var errorDiv = $("
").addClass(errClass).css("position", "absolute")
+ .css("top", el.offsetTop)
+ .css("left", el.offsetLeft)
+ // setting width can push out the page size, forcing otherwise
+ // unnecessary scrollbars to appear and making it impossible for
+ // the element to shrink; so use max-width instead
+ .css("maxWidth", el.offsetWidth)
+ .css("height", el.offsetHeight);
+ errorDiv.text(err.message);
+ $el.after(errorDiv);
+
+ // Really dumb way to keep the size/position of the error in sync with
+ // the parent element as the window is resized or whatever.
+ var intId = setInterval(function() {
+ if (!errorDiv[0].parentElement) {
+ clearInterval(intId);
+ return;
+ }
+ errorDiv
+ .css("top", el.offsetTop)
+ .css("left", el.offsetLeft)
+ .css("maxWidth", el.offsetWidth)
+ .css("height", el.offsetHeight);
+ }, 500);
+ }
+ }
+ },
+ clearError: function(el) {
+ var $el = $(el);
+ var display = $el.data("restore-display-mode");
+ $el.data("restore-display-mode", null);
+
+ if (display === "inline" || display === "inline-block") {
+ if (display)
+ $el.css("display", display);
+ $(el.nextSibling).filter(".htmlwidgets-error").remove();
+ } else if (display === "block"){
+ $el.css("visibility", "inherit");
+ $(el.nextSibling).filter(".htmlwidgets-error").remove();
+ }
+ },
+ sizing: {}
+ };
+
+ // Called by widget bindings to register a new type of widget. The definition
+ // object can contain the following properties:
+ // - name (required) - A string indicating the binding name, which will be
+ // used by default as the CSS classname to look for.
+ // - initialize (optional) - A function(el) that will be called once per
+ // widget element; if a value is returned, it will be passed as the third
+ // value to renderValue.
+ // - renderValue (required) - A function(el, data, initValue) that will be
+ // called with data. Static contexts will cause this to be called once per
+ // element; Shiny apps will cause this to be called multiple times per
+ // element, as the data changes.
+ window.HTMLWidgets.widget = function(definition) {
+ if (!definition.name) {
+ throw new Error("Widget must have a name");
+ }
+ if (!definition.type) {
+ throw new Error("Widget must have a type");
+ }
+ // Currently we only support output widgets
+ if (definition.type !== "output") {
+ throw new Error("Unrecognized widget type '" + definition.type + "'");
+ }
+ // TODO: Verify that .name is a valid CSS classname
+
+ // Support new-style instance-bound definitions. Old-style class-bound
+ // definitions have one widget "object" per widget per type/class of
+ // widget; the renderValue and resize methods on such widget objects
+ // take el and instance arguments, because the widget object can't
+ // store them. New-style instance-bound definitions have one widget
+ // object per widget instance; the definition that's passed in doesn't
+ // provide renderValue or resize methods at all, just the single method
+ // factory(el, width, height)
+ // which returns an object that has renderValue(x) and resize(w, h).
+ // This enables a far more natural programming style for the widget
+ // author, who can store per-instance state using either OO-style
+ // instance fields or functional-style closure variables (I guess this
+ // is in contrast to what can only be called C-style pseudo-OO which is
+ // what we required before).
+ if (definition.factory) {
+ definition = createLegacyDefinitionAdapter(definition);
+ }
+
+ if (!definition.renderValue) {
+ throw new Error("Widget must have a renderValue function");
+ }
+
+ // For static rendering (non-Shiny), use a simple widget registration
+ // scheme. We also use this scheme for Shiny apps/documents that also
+ // contain static widgets.
+ window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || [];
+ // Merge defaults into the definition; don't mutate the original definition.
+ var staticBinding = extend({}, defaults, definition);
+ overrideMethod(staticBinding, "find", function(superfunc) {
+ return function(scope) {
+ var results = superfunc(scope);
+ // Filter out Shiny outputs, we only want the static kind
+ return filterByClass(results, "html-widget-output", false);
+ };
+ });
+ window.HTMLWidgets.widgets.push(staticBinding);
+
+ if (shinyMode) {
+ // Shiny is running. Register the definition with an output binding.
+ // The definition itself will not be the output binding, instead
+ // we will make an output binding object that delegates to the
+ // definition. This is because we foolishly used the same method
+ // name (renderValue) for htmlwidgets definition and Shiny bindings
+ // but they actually have quite different semantics (the Shiny
+ // bindings receive data that includes lots of metadata that it
+ // strips off before calling htmlwidgets renderValue). We can't
+ // just ignore the difference because in some widgets it's helpful
+ // to call this.renderValue() from inside of resize(), and if
+ // we're not delegating, then that call will go to the Shiny
+ // version instead of the htmlwidgets version.
+
+ // Merge defaults with definition, without mutating either.
+ var bindingDef = extend({}, defaults, definition);
+
+ // This object will be our actual Shiny binding.
+ var shinyBinding = new Shiny.OutputBinding();
+
+ // With a few exceptions, we'll want to simply use the bindingDef's
+ // version of methods if they are available, otherwise fall back to
+ // Shiny's defaults. NOTE: If Shiny's output bindings gain additional
+ // methods in the future, and we want them to be overrideable by
+ // HTMLWidget binding definitions, then we'll need to add them to this
+ // list.
+ delegateMethod(shinyBinding, bindingDef, "getId");
+ delegateMethod(shinyBinding, bindingDef, "onValueChange");
+ delegateMethod(shinyBinding, bindingDef, "onValueError");
+ delegateMethod(shinyBinding, bindingDef, "renderError");
+ delegateMethod(shinyBinding, bindingDef, "clearError");
+ delegateMethod(shinyBinding, bindingDef, "showProgress");
+
+ // The find, renderValue, and resize are handled differently, because we
+ // want to actually decorate the behavior of the bindingDef methods.
+
+ shinyBinding.find = function(scope) {
+ var results = bindingDef.find(scope);
+
+ // Only return elements that are Shiny outputs, not static ones
+ var dynamicResults = results.filter(".html-widget-output");
+
+ // It's possible that whatever caused Shiny to think there might be
+ // new dynamic outputs, also caused there to be new static outputs.
+ // Since there might be lots of different htmlwidgets bindings, we
+ // schedule execution for later--no need to staticRender multiple
+ // times.
+ if (results.length !== dynamicResults.length)
+ scheduleStaticRender();
+
+ return dynamicResults;
+ };
+
+ // Wrap renderValue to handle initialization, which unfortunately isn't
+ // supported natively by Shiny at the time of this writing.
+
+ shinyBinding.renderValue = function(el, data) {
+ Shiny.renderDependencies(data.deps);
+ // Resolve strings marked as javascript literals to objects
+ if (!(data.evals instanceof Array)) data.evals = [data.evals];
+ for (var i = 0; data.evals && i < data.evals.length; i++) {
+ window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]);
+ }
+ if (!bindingDef.renderOnNullValue) {
+ if (data.x === null) {
+ el.style.visibility = "hidden";
+ return;
+ } else {
+ el.style.visibility = "inherit";
+ }
+ }
+ if (!elementData(el, "initialized")) {
+ initSizing(el);
+
+ elementData(el, "initialized", true);
+ if (bindingDef.initialize) {
+ var rect = el.getBoundingClientRect();
+ var result = bindingDef.initialize(el, rect.width, rect.height);
+ elementData(el, "init_result", result);
+ }
+ }
+ bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
+ evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
+ };
+
+ // Only override resize if bindingDef implements it
+ if (bindingDef.resize) {
+ shinyBinding.resize = function(el, width, height) {
+ // Shiny can call resize before initialize/renderValue have been
+ // called, which doesn't make sense for widgets.
+ if (elementData(el, "initialized")) {
+ bindingDef.resize(el, width, height, elementData(el, "init_result"));
+ }
+ };
+ }
+
+ Shiny.outputBindings.register(shinyBinding, bindingDef.name);
+ }
+ };
+
+ var scheduleStaticRenderTimerId = null;
+ function scheduleStaticRender() {
+ if (!scheduleStaticRenderTimerId) {
+ scheduleStaticRenderTimerId = setTimeout(function() {
+ scheduleStaticRenderTimerId = null;
+ window.HTMLWidgets.staticRender();
+ }, 1);
+ }
+ }
+
+ // Render static widgets after the document finishes loading
+ // Statically render all elements that are of this widget's class
+ window.HTMLWidgets.staticRender = function() {
+ var bindings = window.HTMLWidgets.widgets || [];
+ forEach(bindings, function(binding) {
+ var matches = binding.find(document.documentElement);
+ forEach(matches, function(el) {
+ var sizeObj = initSizing(el, binding);
+
+ var getSize = function(el) {
+ if (sizeObj) {
+ return {w: sizeObj.getWidth(), h: sizeObj.getHeight()}
+ } else {
+ var rect = el.getBoundingClientRect();
+ return {w: rect.width, h: rect.height}
+ }
+ };
+
+ if (hasClass(el, "html-widget-static-bound"))
+ return;
+ el.className = el.className + " html-widget-static-bound";
+
+ var initResult;
+ if (binding.initialize) {
+ var size = getSize(el);
+ initResult = binding.initialize(el, size.w, size.h);
+ elementData(el, "init_result", initResult);
+ }
+
+ if (binding.resize) {
+ var lastSize = getSize(el);
+ var resizeHandler = function(e) {
+ var size = getSize(el);
+ if (size.w === 0 && size.h === 0)
+ return;
+ if (size.w === lastSize.w && size.h === lastSize.h)
+ return;
+ lastSize = size;
+ binding.resize(el, size.w, size.h, initResult);
+ };
+
+ on(window, "resize", resizeHandler);
+
+ // This is needed for cases where we're running in a Shiny
+ // app, but the widget itself is not a Shiny output, but
+ // rather a simple static widget. One example of this is
+ // an rmarkdown document that has runtime:shiny and widget
+ // that isn't in a render function. Shiny only knows to
+ // call resize handlers for Shiny outputs, not for static
+ // widgets, so we do it ourselves.
+ if (window.jQuery) {
+ window.jQuery(document).on(
+ "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets",
+ resizeHandler
+ );
+ window.jQuery(document).on(
+ "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets",
+ resizeHandler
+ );
+ }
+
+ // This is needed for the specific case of ioslides, which
+ // flips slides between display:none and display:block.
+ // Ideally we would not have to have ioslide-specific code
+ // here, but rather have ioslides raise a generic event,
+ // but the rmarkdown package just went to CRAN so the
+ // window to getting that fixed may be long.
+ if (window.addEventListener) {
+ // It's OK to limit this to window.addEventListener
+ // browsers because ioslides itself only supports
+ // such browsers.
+ on(document, "slideenter", resizeHandler);
+ on(document, "slideleave", resizeHandler);
+ }
+ }
+
+ var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']");
+ if (scriptData) {
+ var data = JSON.parse(scriptData.textContent || scriptData.text);
+ // Resolve strings marked as javascript literals to objects
+ if (!(data.evals instanceof Array)) data.evals = [data.evals];
+ for (var k = 0; data.evals && k < data.evals.length; k++) {
+ window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]);
+ }
+ binding.renderValue(el, data.x, initResult);
+ evalAndRun(data.jsHooks.render, initResult, [el, data.x]);
+ }
+ });
+ });
+
+ invokePostRenderHandlers();
+ }
+
+
+ function has_jQuery3() {
+ if (!window.jQuery) {
+ return false;
+ }
+ var $version = window.jQuery.fn.jquery;
+ var $major_version = parseInt($version.split(".")[0]);
+ return $major_version >= 3;
+ }
+
+ /*
+ / Shiny 1.4 bumped jQuery from 1.x to 3.x which means jQuery's
+ / on-ready handler (i.e., $(fn)) is now asyncronous (i.e., it now
+ / really means $(setTimeout(fn)).
+ / https://jquery.com/upgrade-guide/3.0/#breaking-change-document-ready-handlers-are-now-asynchronous
+ /
+ / Since Shiny uses $() to schedule initShiny, shiny>=1.4 calls initShiny
+ / one tick later than it did before, which means staticRender() is
+ / called renderValue() earlier than (advanced) widget authors might be expecting.
+ / https://github.com/rstudio/shiny/issues/2630
+ /
+ / For a concrete example, leaflet has some methods (e.g., updateBounds)
+ / which reference Shiny methods registered in initShiny (e.g., setInputValue).
+ / Since leaflet is privy to this life-cycle, it knows to use setTimeout() to
+ / delay execution of those methods (until Shiny methods are ready)
+ / https://github.com/rstudio/leaflet/blob/18ec981/javascript/src/index.js#L266-L268
+ /
+ / Ideally widget authors wouldn't need to use this setTimeout() hack that
+ / leaflet uses to call Shiny methods on a staticRender(). In the long run,
+ / the logic initShiny should be broken up so that method registration happens
+ / right away, but binding happens later.
+ */
+ function maybeStaticRenderLater() {
+ if (shinyMode && has_jQuery3()) {
+ window.jQuery(window.HTMLWidgets.staticRender);
+ } else {
+ window.HTMLWidgets.staticRender();
+ }
+ }
+
+ if (document.addEventListener) {
+ document.addEventListener("DOMContentLoaded", function() {
+ document.removeEventListener("DOMContentLoaded", arguments.callee, false);
+ maybeStaticRenderLater();
+ }, false);
+ } else if (document.attachEvent) {
+ document.attachEvent("onreadystatechange", function() {
+ if (document.readyState === "complete") {
+ document.detachEvent("onreadystatechange", arguments.callee);
+ maybeStaticRenderLater();
+ }
+ });
+ }
+
+
+ window.HTMLWidgets.getAttachmentUrl = function(depname, key) {
+ // If no key, default to the first item
+ if (typeof(key) === "undefined")
+ key = 1;
+
+ var link = document.getElementById(depname + "-" + key + "-attachment");
+ if (!link) {
+ throw new Error("Attachment " + depname + "/" + key + " not found in document");
+ }
+ return link.getAttribute("href");
+ };
+
+ window.HTMLWidgets.dataframeToD3 = function(df) {
+ var names = [];
+ var length;
+ for (var name in df) {
+ if (df.hasOwnProperty(name))
+ names.push(name);
+ if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") {
+ throw new Error("All fields must be arrays");
+ } else if (typeof(length) !== "undefined" && length !== df[name].length) {
+ throw new Error("All fields must be arrays of the same length");
+ }
+ length = df[name].length;
+ }
+ var results = [];
+ var item;
+ for (var row = 0; row < length; row++) {
+ item = {};
+ for (var col = 0; col < names.length; col++) {
+ item[names[col]] = df[names[col]][row];
+ }
+ results.push(item);
+ }
+ return results;
+ };
+
+ window.HTMLWidgets.transposeArray2D = function(array) {
+ if (array.length === 0) return array;
+ var newArray = array[0].map(function(col, i) {
+ return array.map(function(row) {
+ return row[i]
+ })
+ });
+ return newArray;
+ };
+ // Split value at splitChar, but allow splitChar to be escaped
+ // using escapeChar. Any other characters escaped by escapeChar
+ // will be included as usual (including escapeChar itself).
+ function splitWithEscape(value, splitChar, escapeChar) {
+ var results = [];
+ var escapeMode = false;
+ var currentResult = "";
+ for (var pos = 0; pos < value.length; pos++) {
+ if (!escapeMode) {
+ if (value[pos] === splitChar) {
+ results.push(currentResult);
+ currentResult = "";
+ } else if (value[pos] === escapeChar) {
+ escapeMode = true;
+ } else {
+ currentResult += value[pos];
+ }
+ } else {
+ currentResult += value[pos];
+ escapeMode = false;
+ }
+ }
+ if (currentResult !== "") {
+ results.push(currentResult);
+ }
+ return results;
+ }
+ // Function authored by Yihui/JJ Allaire
+ window.HTMLWidgets.evaluateStringMember = function(o, member) {
+ var parts = splitWithEscape(member, '.', '\\');
+ for (var i = 0, l = parts.length; i < l; i++) {
+ var part = parts[i];
+ // part may be a character or 'numeric' member name
+ if (o !== null && typeof o === "object" && part in o) {
+ if (i == (l - 1)) { // if we are at the end of the line then evalulate
+ if (typeof o[part] === "string")
+ o[part] = tryEval(o[part]);
+ } else { // otherwise continue to next embedded object
+ o = o[part];
+ }
+ }
+ }
+ };
+
+ // Retrieve the HTMLWidget instance (i.e. the return value of an
+ // HTMLWidget binding's initialize() or factory() function)
+ // associated with an element, or null if none.
+ window.HTMLWidgets.getInstance = function(el) {
+ return elementData(el, "init_result");
+ };
+
+ // Finds the first element in the scope that matches the selector,
+ // and returns the HTMLWidget instance (i.e. the return value of
+ // an HTMLWidget binding's initialize() or factory() function)
+ // associated with that element, if any. If no element matches the
+ // selector, or the first matching element has no HTMLWidget
+ // instance associated with it, then null is returned.
+ //
+ // The scope argument is optional, and defaults to window.document.
+ window.HTMLWidgets.find = function(scope, selector) {
+ if (arguments.length == 1) {
+ selector = scope;
+ scope = document;
+ }
+
+ var el = scope.querySelector(selector);
+ if (el === null) {
+ return null;
+ } else {
+ return window.HTMLWidgets.getInstance(el);
+ }
+ };
+
+ // Finds all elements in the scope that match the selector, and
+ // returns the HTMLWidget instances (i.e. the return values of
+ // an HTMLWidget binding's initialize() or factory() function)
+ // associated with the elements, in an array. If elements that
+ // match the selector don't have an associated HTMLWidget
+ // instance, the returned array will contain nulls.
+ //
+ // The scope argument is optional, and defaults to window.document.
+ window.HTMLWidgets.findAll = function(scope, selector) {
+ if (arguments.length == 1) {
+ selector = scope;
+ scope = document;
+ }
+
+ var nodes = scope.querySelectorAll(selector);
+ var results = [];
+ for (var i = 0; i < nodes.length; i++) {
+ results.push(window.HTMLWidgets.getInstance(nodes[i]));
+ }
+ return results;
+ };
+
+ var postRenderHandlers = [];
+ function invokePostRenderHandlers() {
+ while (postRenderHandlers.length) {
+ var handler = postRenderHandlers.shift();
+ if (handler) {
+ handler();
+ }
+ }
+ }
+
+ // Register the given callback function to be invoked after the
+ // next time static widgets are rendered.
+ window.HTMLWidgets.addPostRenderHandler = function(callback) {
+ postRenderHandlers.push(callback);
+ };
+
+ // Takes a new-style instance-bound definition, and returns an
+ // old-style class-bound definition. This saves us from having
+ // to rewrite all the logic in this file to accomodate both
+ // types of definitions.
+ function createLegacyDefinitionAdapter(defn) {
+ var result = {
+ name: defn.name,
+ type: defn.type,
+ initialize: function(el, width, height) {
+ return defn.factory(el, width, height);
+ },
+ renderValue: function(el, x, instance) {
+ return instance.renderValue(x);
+ },
+ resize: function(el, width, height, instance) {
+ return instance.resize(width, height);
+ }
+ };
+
+ if (defn.find)
+ result.find = defn.find;
+ if (defn.renderError)
+ result.renderError = defn.renderError;
+ if (defn.clearError)
+ result.clearError = defn.clearError;
+
+ return result;
+ }
+})();
diff --git a/docs/articles/TidyConsultant_files/jsonedit-binding-4.0.0/jsonedit.js b/docs/articles/TidyConsultant_files/jsonedit-binding-4.0.0/jsonedit.js
new file mode 100644
index 0000000..f1c56e4
--- /dev/null
+++ b/docs/articles/TidyConsultant_files/jsonedit-binding-4.0.0/jsonedit.js
@@ -0,0 +1,38 @@
+HTMLWidgets.widget({
+
+ name: 'jsonedit',
+
+ type: 'output',
+
+ initialize: function(el, width, height) {
+
+ return { editor: null }
+
+ },
+
+ renderValue: function(el, x, instance) {
+
+ // clear out our element in case of dynamic
+ // probably a sloppy way of doing it but easy and dependency-free
+ // feel free to make suggestions
+ el.innerHTML = "";
+
+ // create our editor
+ var editor = new JSONEditor.JSONEditor({
+ target: el,
+ props: {
+ content: (typeof(x.data)==="string") ? {text: x.data} : {json: x.data},
+ ...x.options
+ }
+ });
+
+ // use expando property to store editor for change callback potential
+ instance.editor = editor;
+
+ },
+
+ resize: function(el, width, height, instance) {
+
+ }
+
+});
diff --git a/docs/articles/TidyConsultant_files/jsoneditor-0.18.7/jsoneditor.min.js b/docs/articles/TidyConsultant_files/jsoneditor-0.18.7/jsoneditor.min.js
new file mode 100644
index 0000000..5d36313
--- /dev/null
+++ b/docs/articles/TidyConsultant_files/jsoneditor-0.18.7/jsoneditor.min.js
@@ -0,0 +1,141 @@
+var JSONEditor=(()=>{var rp=Object.defineProperty;var tI=Object.getOwnPropertyDescriptor;var eI=Object.getOwnPropertyNames;var nI=Object.prototype.hasOwnProperty;var rI=(e,t)=>{for(var n in t)rp(e,n,{get:t[n],enumerable:!0})},iI=(e,t,n,r)=>{if(t&&typeof t=="object"||typeof t=="function")for(let i of eI(t))!nI.call(e,i)&&i!==n&&rp(e,i,{get:()=>t[i],enumerable:!(r=tI(t,i))||r.enumerable});return e};var oI=e=>iI(rp({},"__esModule",{value:!0}),e);var Xrt={};rI(Xrt,{JSONEditor:()=>RN});var ip,Ib,Db,zb,Lb,Bb,qb,Fb,Vb,Wb,Hb,Ub,Jb,Kb,Gb,Qb,Yb,Zb,Xb,tw,ew,nw,rw,iw,ow,aw,sw,uw,cw,lw,fw,dw,hw,vw,pw,mw,gw,yw,bw,ww,xw,kw,jw,Sw,Cw,$w,_w,Ow,Mw,Ew,Aw,Pw,Tw,Rw,Nw,Iw,Dw,zw,Lw,Bw,qw,Fw,Vw,Ww,Hw,Uw,Jw,Kw,Gw,Qw,Yw,Zw,Xw,t2,e2,n2,r2,i2,o2,a2,s2,u2,c2,l2,f2,d2,h2,v2,p2,m2,g2,y2,b2,w2,x2,k2,j2,S2,C2,$2,_2,O2,M2,E2,A2,P2,T2,R2,N2,I2,D2,z2,L2,B2,q2,F2,V2,W2,H2,U2,J2,K2,G2,Q2,Y2,Z2,X2,tx,ex,nx,rx,ix,ox,ax,sx,ux,cx,lx,fx,dx,hx,vx,px,mx,gx,yx,bx,wx,xx,kx,jx,Sx,Cx,$x,_x,Ox,Mx,Ex,Ax,Px,Tx,Rx,Nx,Ix,Dx,zx,Lx,Bx,qx,Fx,Vx,Wx,Hx,Ux,Jx,Kx,Gx,Qx,Yx,Zx,Xx,tk,ek,nk,rk,ik,ok,ak,sk,uk,ck,lk,fk,dk,hk,vk,pk,mk,gk,yk,bk,wk,xk,kk,jk,Sk,Ck,$k,_k,Ok,Mk,Ek,Ak,Pk,Tk,Rk,Nk,Ik,Dk,zk,Lk,Bk,qk,Fk,Vk,Wk,Hk,Uk,Jk,Kk,Gk,Qk,Yk,Zk,Xk,tj,ej,nj,rj,ij,oj,aj,sj,uj,cj,lj,fj,dj,hj,vj,pj,mj,gj,yj,bj,wj,xj,kj,jj,Sj,Cj,$j,_j,Oj,Mj,Ej,Aj,Pj,Tj,Rj,Nj,Ij,Dj,zj,Lj,Bj,qj,Fj,Vj,Wj,Hj,Uj,Jj,aI=["mainAxis","crossAxis","fallbackPlacements","fallbackStrategy","fallbackAxisSideDirection","flipAlignment"],sI=["mainAxis","crossAxis","limiter"];function et(e,t){return t||(t=e.slice(0)),Object.freeze(Object.defineProperties(e,{raw:{value:Object.freeze(t)}}))}function fn(){return fn=typeof Reflect<"u"&&Reflect.get?Reflect.get.bind():function(e,t,n){var r=function(o,a){for(;!Object.prototype.hasOwnProperty.call(o,a)&&(o=nn(o))!==null;);return o}(e,t);if(r){var i=Object.getOwnPropertyDescriptor(r,t);return i.get?i.get.call(arguments.length<3?e:n):i.value}},fn.apply(this,arguments)}function c_(e,t){if(e==null)return{};var n,r,i=function(a,s){if(a==null)return{};var u,c,l={},f=Object.keys(a);for(c=0;c=0||(l[u]=a[u]);return l}(e,t);if(Object.getOwnPropertySymbols){var o=Object.getOwnPropertySymbols(e);for(r=0;r=0||Object.prototype.propertyIsEnumerable.call(e,n)&&(i[n]=e[n])}return i}function ut(e,t){var n=typeof Symbol<"u"&&e[Symbol.iterator]||e["@@iterator"];if(!n){if(Array.isArray(e)||(n=nv(e))||t&&e&&typeof e.length=="number"){n&&(e=n);var r=0,i=function(){};return{s:i,n:function(){return r>=e.length?{done:!0}:{done:!1,value:e[r++]}},e:function(u){throw u},f:i}}throw new TypeError(`Invalid attempt to iterate non-iterable instance.
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