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make_plot.py
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make_plot.py
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import time
import cPickle as pickle
import os
import numpy as np
import matplotlib as mpl
mpl.use('Agg')
import matplotlib.pyplot as plt
import mpld3
import csv
import sys
import glob
from mpld3 import plugins
def make_html_plot_for_file(filename, my_title):
my_fontsize = 20
# read in csv file
if os.stat(filename).st_size:
data = np.genfromtxt(filename, delimiter=',')
else:
# empty data file
data = np.zeros([2, 2])
if len(data.shape) == 1:
return "<h2> " + my_title + " has no data </h2>"
x = data[:, 0]
fig, ax = plt.subplots(figsize=(10, 5))
for k in range(1, data.shape[1]):
y = data[:, k]
# sort data
x_sorted = [x1 for (x1,y1) in sorted(zip(x, y))]
y_sorted = [y1 for (x1,y1) in sorted(zip(x, y))]
lines = ax.plot(x_sorted, y_sorted, '.-', markersize=15, label = 'ion ' + str(k-1))
plt.legend(fontsize = my_fontsize, loc = 'best')
plt.title(my_title, fontsize = my_fontsize)
ax.grid()
plt.xticks(fontsize = my_fontsize)
plt.yticks(fontsize = my_fontsize)
plt.xlim([np.min(x), np.max(x)])
#90% of the time that this function takes is taken up after this line
plugins.clear(fig)
plugins.connect(fig, plugins.Reset(), plugins.BoxZoom(), plugins.Zoom(enabled = True),
plugins.MousePosition(fontsize = my_fontsize))
java_txt = mpld3.fig_to_html(fig)
plt.close()
return java_txt
#################################################################
# main program #
#################################################################
if len(sys.argv) == 1:
current_date = time.strftime("%Y%m%d")
else:
current_date = sys.argv[1]
list_of_files = glob.glob(current_date + '/*.info')
for i,j in enumerate(list_of_files):
# remove any duplicates
name = j.split("_")
if len(name) > 2:
del list_of_files[i]
list_of_files = sorted(list_of_files, reverse=True)
no_of_files = len(list_of_files)
current_file_no = no_of_files/5
print "LENGTH: ", no_of_files
print "\ncurrent_file_no: ", current_file_no
no_of_graphs_plotted = 5 - no_of_files%5
if no_of_graphs_plotted == 5 and current_file_no != 0:
no_of_graphs_plotted = 0
current_file_no -= 1
main_file = open(current_date + '/index.html', 'w')
html_text = '\
<html>\
<frameset cols="20%,80%">\
<frame src="list_of_files.html">\
<frame src="data_{}.html", name="data_frame">\
</frameset>\
</html>\
'.format(current_file_no)
main_file.write(html_text)
main_file.close()
cwd = os.getcwd()
html_text = "<html><body>\n"
try:
os.remove(current_date + "/data_" + str(current_file_no) + ".html")
except OSError:
print "File doesn't exist"
file = open(current_date + '/data_' + str(current_file_no) + '.html', 'w')
file.write(html_text)
list_file = open(current_date + '/list_of_files.html', 'w')
# keep a list of files for which plots have
# already been generated
list_of_files_pickle = cwd + "/" + current_date \
+ "/list_of_files.pickle"
try:
with open(list_of_files_pickle, "rb") as pickle_in:
pickle_list = pickle.load(pickle_in)
except IOError:
pickle_list = ["last"]
list_file_txt = ""
plotted_count = 0
print "no_of_graphs_plotted initially: ", no_of_graphs_plotted
for k in range(no_of_files):
no_of_graphs_plotted += 1
info_filename = list_of_files[k]
my_file = open(info_filename, 'r')
# lines[0] is the title
# lines[1] is the path to the file
lines = my_file.read().split("\n")
# write scan number into table of contents file
target_id = lines[0].split(" - ")[2]
list_file_txt += '<a href="data_' + str(current_file_no) + '.html#' + target_id \
+ '" target="data_frame">' + lines[0] + '</a><br><br>\n'
# Don't make a new plot if it already exists
if lines[0] in pickle_list:
if no_of_graphs_plotted == 5:
no_of_graphs_plotted = 0
current_file_no -= 1
print "made it here\n"
continue
else:
pickle_list.insert(0, lines[0])
java_text = make_html_plot_for_file(lines[1], lines[0]) + "\n"
plotted_count += 1
# write graph into main file
file.write('<br id = ' + target_id + ">\n")
file.write(java_text)
file.write("<br><hr>\n")
print "no_of_graphs_plotted: ", no_of_graphs_plotted
if no_of_graphs_plotted == 5:
no_of_graphs_plotted = 0
current_file_no -= 1
try:
temp_file = open(list_of_files[k+1], "r")
lines_temp = temp_file.read().split("\n")
temp_file.close()
if lines_temp[0] in pickle_list:
continue
except IndexError:
print "Reached last element"
# change the file
if current_file_no < 0:
continue
html_text = "</body>\</html>\n"
file.write(html_text)
file.close()
print "no_of_graphs_plotted, finishing a run: ", no_of_graphs_plotted
print "current_file_no: ", current_file_no
# open new file
file = open(current_date + '/data_' + str(current_file_no) + '.html', 'w')
html_text = "<html><body>\n"
file.write(html_text)
try:
pickle_list = pickle_list[5+no_of_files%5:]
except:
pickle_list = ["last"]
list_file.write(list_file_txt)
list_file.close()
print "TOTAL PLOTTED: ", plotted_count
html_text = "</body>\</html>\n"
file.write(html_text + "\n")
file.close()
with open(list_of_files_pickle, "wb") as pickle_out:
pickle.dump(pickle_list, pickle_out)