diff --git a/Dockerfile b/Dockerfile deleted file mode 100644 index d091a08..0000000 --- a/Dockerfile +++ /dev/null @@ -1,10 +0,0 @@ -FROM python:3 - -LABEL maintainer "Hadrien Gourlé " - -WORKDIR /usr/src/app - -COPY . . -RUN pip install --no-cache-dir . - -CMD [ "iss" ] diff --git a/README.md b/README.md index 369a637..1a63e0c 100644 --- a/README.md +++ b/README.md @@ -37,7 +37,7 @@ _Note:_ Insilicoseq requires python >= 3.5 Alternatively, with docker: ```shell -docker pull hadrieng/insilicoseq:latest +docker pull quay.io/biocontainers/insilicoseq:2.0.0--pyh7cba7a3_0 ``` For more installation options, please refer to the full [documentation](http://insilicoseq.readthedocs.io) diff --git a/doc/iss/install.rst b/doc/iss/install.rst index a80dd58..27604a7 100644 --- a/doc/iss/install.rst +++ b/doc/iss/install.rst @@ -63,15 +63,16 @@ If you wish to use InSilicoSeq using docker .. code-block:: bash - docker pull hadrieng/insilicoseq:latest + docker pull docker pull quay.io/biocontainers/insilicoseq: +Where should be chosen amongst the tags available on `quay.io `_ . To use InSilicoSeq with docker, you need to provide a `volume` to the ``docker run`` command. Given with the ``-v`` option, the volume is your way of exchanging data (in this case, your input and output files) with the docker container. .. code-block:: bash docker run -v /Users/hadrien/data:/mnt/data -it --rm \ - hadrieng/insilicoseq iss generate \ + quay.io/biocontainers/insilicoseq: iss generate \ --genomes /mnt/data/genomes.fasta -m miseq \ -o /mnt/data/reads