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Running issue!! #69

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g-s-2018 opened this issue Jan 8, 2023 · 0 comments
Open

Running issue!! #69

g-s-2018 opened this issue Jan 8, 2023 · 0 comments

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@g-s-2018
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g-s-2018 commented Jan 8, 2023

Dear,
I trying to run the Clair using docker

Here is my command
docker run -v '/home/gsh/nanocaller/input':'/input/' -v '/home/gsh/nanocaller/output':'/output/'-it hkubal/clair3:latest /opt/bin/run_clair3.sh -b /input/filtered-minmap_rsvrbv_n1_24hpi-soreted_1m.bam -f /input/KT992094.1.fasta -output /output --threads=5 --platform=ont --model_path=/opt/models/r941_prom_hac_g360+g422

I am getting this error and I am not sure what is the problem

Screenshot 2023-01-08 at 17 06 28

Thanks in advance,

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