ubuntu_openmpi.yml

name: Ubuntu with OpenMPI

on:
  push:
    branches: [ master, dev ]
    paths-ignore:
      - '**/*.md'
      - '**/*.txt'
      - '**/*.jpg'
      - '**/*.png'
      - 'docs/*'
      - 'case_studies/*'
  pull_request:
    branches: [ master, dev ]
    paths-ignore:
      - '**/*.md'
      - '**/*.txt'
      - '**/*.jpg'
      - '**/*.png'
      - 'docs/*'
      - 'case_studies/*'

env:
   NETCDF_VERSION: 4.9.2

jobs:
    build:
      runs-on: ubuntu-latest
      timeout-minutes: 60
      steps:
        - uses: actions/checkout@v4.1.1
        - name: Set up dependencies
          run: |
            sudo apt-get update
            sudo apt-get install automake autoconf libtool libtool-bin m4 uuid-dev
            # zlib
            sudo apt-get install zlib1g-dev
            # mpi
            sudo apt-get install openmpi-bin openmpi-common libopenmpi-dev libgtk2.0-dev
            echo "---- location of OpenMPI C compiler ----"
            which mpicc
        - name: Install HDF5
          run: |
            cd ${GITHUB_WORKSPACE}
            echo "Install HDF5 on ${GITHUB_WORKSPACE}/HDF5"
            rm -rf HDF5 ; mkdir HDF5 ; cd HDF5
            wget -cq https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz
            tar -zxf hdf5.tar.gz
            cd hdf5-*
            ./configure --prefix=${GITHUB_WORKSPACE}/HDF5 \
                        --silent \
                        --enable-parallel \
                        --enable-build-mode=production \
                        --enable-unsupported \
                        --enable-threadsafe \
                        --disable-doxygen-doc \
                        --disable-doxygen-man \
                        --disable-doxygen-html \
                        --disable-tests \
                        --disable-fortran \
                        --disable-cxx \
                        --enable-shared --disable-static \
                        CC=mpicc
            make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1
            make -s -j 4 distclean >> qout 2>&1
        - name: Dump config.log if HDF5 fails to build
          if: ${{ failure() }}
          run: |
            cat ${GITHUB_WORKSPACE}/HDF5/hdf5-${HDF5_VERSION}/config.log
        - name: Install NetCDF
          run: |
            cd ${GITHUB_WORKSPACE}
            echo "Install NetCDF-C on ${GITHUB_WORKSPACE}/NetCDF"
            rm -rf NetCDF ; mkdir NetCDF ; cd NetCDF
            wget -cq https://github.com/Unidata/netcdf-c/archive/refs/tags/v${NETCDF_VERSION}.tar.gz
            tar -zxf v${NETCDF_VERSION}.tar.gz
            cd netcdf-c-${NETCDF_VERSION}
            ./configure --prefix=${GITHUB_WORKSPACE}/NetCDF \
                        --silent \
                        --disable-dap \
                        --disable-nczarr \
                        --disable-nczarr-filters \
                        --disable-filter-testing \
                        --disable-byterange \
                        --disable-shared \
                        CC=mpicc \
                        CPPFLAGS="-I${GITHUB_WORKSPACE}/HDF5/include" \
                        LDFLAGS="-L${GITHUB_WORKSPACE}/HDF5/lib" \
                        LIBS="-lhdf5"
            make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1
            make -s -j 4 distclean >> qout 2>&1
        - name: Dump config.log if NetCDF4 fails to build
          if: ${{ failure() }}
          run: |
            cat ${GITHUB_WORKSPACE}/NetCDF/netcdf-c-${NETCDF_VERSION}/config.log            
        - name: Configure Log VOL connector
          run: |
            cd ${GITHUB_WORKSPACE}
            autoreconf -i
            ./configure --with-hdf5=${GITHUB_WORKSPACE}/HDF5 \
                        --enable-test-netcdf4=${GITHUB_WORKSPACE}/NetCDF \
                        --enable-test-hdf5-iotest \
                        TESTMPIRUN="mpiexec --oversubscribe -n NP"
            # Do NOT test QMCPACK, as it requires FFTW which fails to build
        - name: Print config.log if error
          if: ${{ failure() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            cat config.log
        - name: Build Log VOL connector
          if: ${{ success() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            make -j 4
            # Do NOT parallel build, cmake for external tests can fail
            make tests
        - name: Serial-run test - make check
          if: ${{ success() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            make check
        - name: Print test log files
          if: ${{ always() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            fname=`find tests utils examples -type f -name "*.log"`
            for f in $fname ; do \
               bname=`basename $f` ; \
               if test "x$bname" != xconfig.log ; then \
                  echo "-------- dump $f ----------------------------" ; \
                  cat $f ; \
               fi ; \
            done
        - name: Parallel-run test - make ptest
          if: ${{ success() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            make ptest
        - name: Test distribution - make distcheck
          if: ${{ success() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            make -j4 -s V=1 LIBTOOLFLAGS=--silent distcheck DISTCHECK_CONFIGURE_FLAGS="--silent --with-hdf5=${GITHUB_WORKSPACE}/HDF5"
        - name: make distclean
          if: ${{ always() }}
          run: |
            cd ${GITHUB_WORKSPACE}
            make -s distclean