Deflate related test failures with 1.12.2/1.14.0 on Fedora Rawhide

[opoplawski]

Describe the bug
I'm working on updating the Fedora hdf5 package to 1.12.2. Building locally I'm getting the following test failures:

Testing: dsets 
============================
Test log for dsets 
============================
....
Testing dataset access with missing filter                            *FAILED*
    Line 2883: Deflate filter available
... (repeats 7 more times)
***** 8 DATASET TESTS FAILED! *****

I'm not seeing this when building in our buildsystem so something present on my system is likely causing it, but I don't know what.

Platform (please complete the following information)

• HDF5 version 1.12.2
• OS and version - Fedora Rawhide
• Compiler and version - gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)
• Build system (e.g. CMake, Autotools) and version - autotools
• Any configure options you specified

configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-silent-rules --enable-fortran --enable-hl --enable-shared --with-szlib --enable-cxx --enable-java --with-default-plugindir=/usr/lib64/hdf5/plugin

            SUMMARY OF THE HDF5 CONFIGURATION
            =================================

General Information:
-------------------
                   HDF5 Version: 1.12.2
                  Configured on: Fri Dec 16 07:20:48 MST 2022
                  Configured by: [email protected] at Colorado Research Associates
                    Host system: x86_64-redhat-linux-gnu
              Uname information: Linux vmrawhide-rufous.cora.nwra.com 6.1.0-0.rc7.20221130git01f856ae6d0c.53.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Nov 30 14:29:35 UTC 2022 x86_64 GNU/Linux
                       Byte sex: little-endian
             Installation point: /usr

Compiling Options:
------------------
                     Build Mode: production
              Debugging Symbols: no
                        Asserts: no
                      Profiling: no
             Optimization Level: high

Linking Options:
----------------
                      Libraries: static, shared
  Statically Linked Executables: 
                        LDFLAGS: -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fPIC -Wl,-z,now -Wl,--as-needed
                     H5_LDFLAGS: 
                     AM_LDFLAGS: 
                Extra libraries: -lsz -lz -ldl -lm 
                       Archiver: ar
                       AR_FLAGS: cr
                         Ranlib: ranlib

Languages:
----------
                              C: yes
                     C Compiler: /usr/lib64/ccache/gcc ( gcc (GCC) 12.2.1 20221121 )
                       CPPFLAGS: 
                    H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L   -DNDEBUG -UH5_DEBUG_API
                    AM_CPPFLAGS: 
                        C Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
                     H5 C Flags:  -std=c99  -Wall -Wcast-qual -Wconversion -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wshadow -Wundef -Wwrite-strings -pedantic -Wno-c++-compat -Wlarger-than=2560 -Wlogical-op -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wsync-nand -Wstrict-overflow=5 -Wno-unsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wmaybe-uninitialized -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -Wduplicated-cond -Whsa -Wnormalized -Wnull-dereference -Wunused-const-variable -Walloca -Walloc-zero -Wduplicated-branches -Wformat-overflow=2 -Wformat-truncation=1 -Wrestrict -Wattribute-alias -Wcast-align=strict -Wshift-overflow=2 -Wattribute-alias=2 -Wmissing-profile -Wc11-c2x-compat -fstdarg-opt -fdiagnostics-urls=never -fno-diagnostics-color -s  -Wbad-function-cast -Wimplicit-function-declaration -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-sign -Wpointer-to-int-cast -Wint-to-pointer-cast -Wredundant-decls -Wstrict-prototypes -Wswitch -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wunused-but-set-variable -Wformat -Wincompatible-pointer-types -Wint-conversion -Wshadow -Wcast-function-type -Wmaybe-uninitialized -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-overlength-strings -Wno-jump-misses-init -Wno-suggest-attribute=const -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=pure -Wno-suggest-attribute=format -Wno-suggest-attribute=cold -Wno-suggest-attribute=malloc -O3
                     AM C Flags: 
               Shared C Library: yes
               Static C Library: yes


                        Fortran: yes
               Fortran Compiler: /usr/bin/gfortran ( GNU Fortran (GCC) 12.2.1 20221121 )
                  Fortran Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules
               H5 Fortran Flags:  -std=f2008  -Waliasing -Wall -Wcharacter-truncation -Wextra -Wimplicit-interface -Wsurprising -Wunderflow -pedantic -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Winteger-division -Wfrontend-loop-interchange  -fdiagnostics-urls=never -fno-diagnostics-color -s -O3
               AM Fortran Flags: 
         Shared Fortran Library: yes
         Static Fortran Library: yes

                            C++: yes
                   C++ Compiler: /usr/lib64/ccache/g++ ( g++ (GCC) 12.2.1 20221121 )
                      C++ Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
                   H5 C++ Flags:   -Wall -Wcast-qual -Wconversion -Wctor-dtor-privacy -Weffc++ -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wnon-virtual-dtor -Wold-style-cast -Woverloaded-virtual -Wreorder -Wshadow -Wsign-promo -Wundef -Wwrite-strings -pedantic -Wlarger-than=2560 -Wlogical-op -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wsync-nand -Wstrict-overflow=5 -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wmaybe-uninitialized -Wdate-time -Wopenmp-simd -Warray-bounds=2 -Wduplicated-cond -Whsa -Wnormalized -Wnull-dereference -Wunused-const-variable -Walloca -Walloc-zero -Wduplicated-branches -Wformat-overflow=2 -Wformat-truncation=1 -Wrestrict -Wattribute-alias -Wcast-align=strict -Wshift-overflow=2 -Wattribute-alias=2 -Wmissing-profile -Wno-deprecated-copy -fstdarg-opt -fdiagnostics-urls=never -fno-diagnostics-color -s  -Wcast-align -Wmissing-declarations -Wpacked -Wredundant-decls -Wswitch -Wunused-but-set-variable -Wunused-function -Wunused-variable -Wunused-parameter -Wshadow -O3
                   AM C++ Flags: 
             Shared C++ Library: yes
             Static C++ Library: yes

                           Java: yes
                  Java Compiler: /usr/bin/java (openjdk 17.0.6-ea 2023-01-17)


Features:
---------
                     Parallel HDF5: no
  Parallel Filtered Dataset Writes: no
                Large Parallel I/O: no
                High-level library: yes
Dimension scales w/ new references: no
                  Build HDF5 Tests: yes
                  Build HDF5 Tools: yes
                      Threadsafety: no
               Default API mapping: v112
    With deprecated public symbols: yes
            I/O filters (external): deflate(zlib),szip(encoder)
                               MPE: no
                     Map (H5M) API: no
                        Direct VFD: no
                        Mirror VFD: no
                (Read-Only) S3 VFD: no
              (Read-Only) HDFS VFD: no
                           dmalloc: no
    Packages w/ extra debug output: none
                       API tracing: no
              Using memory checker: no
   Memory allocation sanity checks: no
            Function stack tracing: no
                  Use file locking: best-effort
         Strict file format checks: no
      Optimization instrumentation: no

[opoplawski]

Okay, I think I understand what is going here. When I'm building locally, I have netcdf installed which provides the deflate filter. The test needs to be made more robust I think by setting the plugin search path to a known location that does not contain any filters.

[opoplawski]

Still seeing this with latest 1_14 branch (commit 3c86f0f)