multiqc_config.yaml

custom_data:

    scChIPseq_general_table:
        id: 'scChIPseq_general_table'
        file_format: 'csv'
        section_name: 'General Stats'
        plot_type: 'table'
        pconfig:
            id: 'scChIPseq_barcode_plot'
            title: 'Barcode Mapping'
            cpswitch_counts_label': 'Number of Reads'
        headers:
            '%Aligned':
                description: '% Aligned'
                format: '{:,.0f}'
                max: 100
                min: 0
                suffix: '%'
                scale: 'YlGn'
            '%Aligned_Barcoded':
                description: '% Aligned and Barcoded'
                format: '{:,.0f}'
                max: 100
                min: 0
                suffix: '%'
                scale: 'YlGn'
            '%Unique_Reads':
                description: '% Unique Reads'
                format: '{:,.0f}'
                max: 100
                min: 0
                suffix: '%'
                scale: 'YlGn'
            
    scChIPseq_barcode:
        id: 'scChIPseq_barcode'
        file_format: 'csv'
        description: '{desc}'
        section_name: 'Barcode Matching'
        plot_type: 'bargraph'
        pconfig:
            id: 'scChIPseq_barcode_plot'
            title: 'Barcode Mapping'
            ylab: '# Reads'
            cpswitch_counts_label': 'Number of Reads'

    scChIPseq_alignments:
        id: 'scChIPseq_alignments'
        file_format: 'csv'
        section_name: Alignment Scores'
        plot_type: 'bargraph'
        pconfig:
            id: 'scChIPseq_alignments_plot'
            title: 'scChIPseq: Barcode Mapping'
            ylab: '# Reads'
            cpswitch_counts_label': 'Number of Reads'


sp:
    scChIPseq_general_table:
        fn: '*scChIPseq_table.csv'
    scChIPseq_barcode:
        fn: '*scChIPseq_barcode.csv'
    scChIPseq_alignments:
        fn: '*scChIPseq_alignments.csv'