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Update SV callers to the latest versions #35

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4 tasks
arnikz opened this issue Feb 3, 2020 · 2 comments
Open
4 tasks

Update SV callers to the latest versions #35

arnikz opened this issue Feb 3, 2020 · 2 comments
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code enhancement

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@arnikz
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arnikz commented Feb 3, 2020

  • Manta v1.1.0 -> 1.6.0
  • DELLY v0.7.7 -> 0.8.1
  • LUMPY v0.2.13 -> 0.3.0
  • GRIDSS v1.3.4 -> 2.7.3
@arnikz arnikz added this to the 1.2.0 milestone Feb 3, 2020
@arnikz arnikz mentioned this issue Oct 23, 2020
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@arnikz arnikz removed this from the 1.2.0 milestone Dec 2, 2020
@arnikz arnikz mentioned this issue Mar 2, 2021
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@arnikz arnikz mentioned this issue Apr 29, 2021
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@arnikz arnikz mentioned this issue Jul 22, 2021
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lsantuari added a commit that referenced this issue Aug 23, 2021
@lsantuari
Update env file for all callers #35 #69
d2ad42e
@lsantuari
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Hi @arnikz, thank you for pointing it out, I missed it.
Is Travis active in the branches? I would like to test #69 with the updated env file.

@arnikz
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arnikz commented Aug 23, 2021

Hi @lsantuari, please use GH Actions instead of Travis (#55).

lsantuari added a commit that referenced this issue Sep 3, 2021
@lsantuari
gridss2 works #35 #69
fda5268
lsantuari added a commit that referenced this issue Jan 13, 2022
@lsantuari
use github actions #35 #69
d55dc95
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@arnikz @lsantuari