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Error in EstimateSizeFactorsForMatrix: at least one zero #45

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notthathime opened this issue Apr 28, 2023 · 1 comment
Open

Error in EstimateSizeFactorsForMatrix: at least one zero #45

notthathime opened this issue Apr 28, 2023 · 1 comment

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@notthathime
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Thank you very much for sharing your amazing work.
I encountered a problem after running Result function.

It showed as below:
Calculating junction counts
Calculating normalized read counts...
converting counts to interger mode
Error in EstimateSizeFactorsForMatrix: (counts(object), locfunc = locfunc, :
every gene contains at least one zero, cannot compute log geometric means

Could you please help me with this error? What would you suggest to fix this error?

Thank you very much
@jleechung
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This is an error associated with DESeq2's estimateSizeFactors function. Please refer to the discussion here.

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@notthathime @jleechung