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calculatePromoterReadCounts were not running #44

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GuangyaoL opened this issue Mar 8, 2023 · 1 comment
Open

calculatePromoterReadCounts were not running #44

GuangyaoL opened this issue Mar 8, 2023 · 1 comment

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@GuangyaoL
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hi~
proActiv::calculatePromoterReadCounts(files=files, promoterAnnotation = promoterAnnotion.genecode.dm6.subset,fileType="star")

we counted promoters count by using this function and found that ···Error: 'calculatePromoterReadCounts' is not an exported object from 'namespace:proActiv' ···
@jleechung
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Hi @GuangyaoL,

What version of proActiv are you running?

calculatePromoterReadCounts has been deprecated in the current version of proActiv. Please see the workflow for the latest version here, which runs proActiv in a single command.

Alternatively, you can use the original implementation of proActiv, by downloading this release.

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@GuangyaoL @jleechung