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mixs-schemasheets-concise.tsv
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mixs-schemasheets-concise.tsv
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slot class examples values structured_pattern Expected_value Preferred_unit use_cases alias aliases class_uri comments description domain domain_of from_schema in_subset inlined inlined_as_list is_a keywords mixin mixins multivalued owner pattern range recommended required see_also slot_uri string_serialization title tree_root
>slot class examples structured_pattern annotations annotations annotations alias aliases class_uri comments description domain domain_of from_schema in_subset inlined inlined_as_list is_a keywords mixin mixins multivalued owner pattern range recommended required see_also slot_uri string_serialization title tree_root
> "inner_key: ""value""" "inner_key: ""syntax""" "inner_key: ""Expected_value""" "inner_key: ""Preferred_unit""" "inner_key: ""use_cases"""
> "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|""" "internal_separator: ""|"""
migs_ba_data Data that comply with checklist MigsBa MixsCompliantData https://w3id.org/mixs true true true MigsBa MIXS:migs_ba_data MigsBa data
agriculture_data Data that comply with Extension Agriculture MixsCompliantData https://w3id.org/mixs true true true Agriculture MIXS:agriculture_data Agriculture data
migs_ba_agriculture_data Data that comply with MigsBa combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MigsBaAgriculture MIXS:migs_ba_agriculture_data MigsBaAgriculture data
air_data Data that comply with Extension Air MixsCompliantData https://w3id.org/mixs true true air true Air MIXS:air_data Air data
migs_ba_air_data Data that comply with MigsBa combined with Air MixsCompliantData https://w3id.org/mixs true true true MigsBaAir MIXS:migs_ba_air_data MigsBaAir data
built_environment_data Data that comply with Extension BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true BuiltEnvironment MIXS:built_environment_data BuiltEnvironment data
migs_ba_built_environment_data Data that comply with MigsBa combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsBaBuiltEnvironment MIXS:migs_ba_built_environment_data MigsBaBuiltEnvironment data
food_animal_and_animal_feed_data Data that comply with Extension FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true FoodAnimalAndAnimalFeed MIXS:food_animal_and_animal_feed_data FoodAnimalAndAnimalFeed data
migs_ba_food_animal_and_animal_feed_data Data that comply with MigsBa combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MigsBaFoodAnimalAndAnimalFeed MIXS:migs_ba_food_animal_and_animal_feed_data MigsBaFoodAnimalAndAnimalFeed data
food_farm_environment_data Data that comply with Extension FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true FoodFarmEnvironment MIXS:food_farm_environment_data FoodFarmEnvironment data
migs_ba_food_farm_environment_data Data that comply with MigsBa combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsBaFoodFarmEnvironment MIXS:migs_ba_food_farm_environment_data MigsBaFoodFarmEnvironment data
food_food_production_facility_data Data that comply with Extension FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true FoodFoodProductionFacility MIXS:food_food_production_facility_data FoodFoodProductionFacility data
migs_ba_food_food_production_facility_data Data that comply with MigsBa combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MigsBaFoodFoodProductionFacility MIXS:migs_ba_food_food_production_facility_data MigsBaFoodFoodProductionFacility data
food_human_foods_data Data that comply with Extension FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true FoodHumanFoods MIXS:food_human_foods_data FoodHumanFoods data
migs_ba_food_human_foods_data Data that comply with MigsBa combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MigsBaFoodHumanFoods MIXS:migs_ba_food_human_foods_data MigsBaFoodHumanFoods data
host_associated_data Data that comply with Extension HostAssociated MixsCompliantData https://w3id.org/mixs true true true HostAssociated MIXS:host_associated_data HostAssociated data
migs_ba_host_associated_data Data that comply with MigsBa combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MigsBaHostAssociated MIXS:migs_ba_host_associated_data MigsBaHostAssociated data
human_associated_data Data that comply with Extension HumanAssociated MixsCompliantData https://w3id.org/mixs true true true HumanAssociated MIXS:human_associated_data HumanAssociated data
migs_ba_human_associated_data Data that comply with MigsBa combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MigsBaHumanAssociated MIXS:migs_ba_human_associated_data MigsBaHumanAssociated data
human_gut_data Data that comply with Extension HumanGut MixsCompliantData https://w3id.org/mixs true true true HumanGut MIXS:human_gut_data HumanGut data
migs_ba_human_gut_data Data that comply with MigsBa combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MigsBaHumanGut MIXS:migs_ba_human_gut_data MigsBaHumanGut data
human_oral_data Data that comply with Extension HumanOral MixsCompliantData https://w3id.org/mixs true true true HumanOral MIXS:human_oral_data HumanOral data
migs_ba_human_oral_data Data that comply with MigsBa combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MigsBaHumanOral MIXS:migs_ba_human_oral_data MigsBaHumanOral data
human_skin_data Data that comply with Extension HumanSkin MixsCompliantData https://w3id.org/mixs true true true HumanSkin MIXS:human_skin_data HumanSkin data
migs_ba_human_skin_data Data that comply with MigsBa combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MigsBaHumanSkin MIXS:migs_ba_human_skin_data MigsBaHumanSkin data
human_vaginal_data Data that comply with Extension HumanVaginal MixsCompliantData https://w3id.org/mixs true true true HumanVaginal MIXS:human_vaginal_data HumanVaginal data
migs_ba_human_vaginal_data Data that comply with MigsBa combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MigsBaHumanVaginal MIXS:migs_ba_human_vaginal_data MigsBaHumanVaginal data
hydrocarbon_resources_cores_data Data that comply with Extension HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true HydrocarbonResourcesCores MIXS:hydrocarbon_resources_cores_data HydrocarbonResourcesCores data
migs_ba_hydrocarbon_resources_cores_data Data that comply with MigsBa combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MigsBaHydrocarbonResourcesCores MIXS:migs_ba_hydrocarbon_resources_cores_data MigsBaHydrocarbonResourcesCores data
hydrocarbon_resources_fluids_swabs_data Data that comply with Extension HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true HydrocarbonResourcesFluidsSwabs MIXS:hydrocarbon_resources_fluids_swabs_data HydrocarbonResourcesFluidsSwabs data
migs_ba_hydrocarbon_resources_fluids_swabs_data Data that comply with MigsBa combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MigsBaHydrocarbonResourcesFluidsSwabs MIXS:migs_ba_hydrocarbon_resources_fluids_swabs_data MigsBaHydrocarbonResourcesFluidsSwabs data
microbial_mat_biofilm_data Data that comply with Extension MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MicrobialMatBiofilm MIXS:microbial_mat_biofilm_data MicrobialMatBiofilm data
migs_ba_microbial_mat_biofilm_data Data that comply with MigsBa combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MigsBaMicrobialMatBiofilm MIXS:migs_ba_microbial_mat_biofilm_data MigsBaMicrobialMatBiofilm data
miscellaneous_natural_or_artificial_environment_data Data that comply with Extension MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MiscellaneousNaturalOrArtificialEnvironment MIXS:miscellaneous_natural_or_artificial_environment_data MiscellaneousNaturalOrArtificialEnvironment data
migs_ba_miscellaneous_natural_or_artificial_environment_data Data that comply with MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsBaMiscellaneousNaturalOrArtificialEnvironment MIXS:migs_ba_miscellaneous_natural_or_artificial_environment_data MigsBaMiscellaneousNaturalOrArtificialEnvironment data
plant_associated_data Data that comply with Extension PlantAssociated MixsCompliantData https://w3id.org/mixs true true true PlantAssociated MIXS:plant_associated_data PlantAssociated data
migs_ba_plant_associated_data Data that comply with MigsBa combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MigsBaPlantAssociated MIXS:migs_ba_plant_associated_data MigsBaPlantAssociated data
sediment_data Data that comply with Extension Sediment MixsCompliantData https://w3id.org/mixs true true sediment true Sediment MIXS:sediment_data Sediment data
migs_ba_sediment_data Data that comply with MigsBa combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MigsBaSediment MIXS:migs_ba_sediment_data MigsBaSediment data
soil_data Data that comply with Extension Soil MixsCompliantData https://w3id.org/mixs true true soil true Soil MIXS:soil_data Soil data
migs_ba_soil_data Data that comply with MigsBa combined with Soil MixsCompliantData https://w3id.org/mixs true true true MigsBaSoil MIXS:migs_ba_soil_data MigsBaSoil data
symbiont_associated_data Data that comply with Extension SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true SymbiontAssociated MIXS:symbiont_associated_data SymbiontAssociated data
migs_ba_symbiont_associated_data Data that comply with MigsBa combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MigsBaSymbiontAssociated MIXS:migs_ba_symbiont_associated_data MigsBaSymbiontAssociated data
wastewater_sludge_data Data that comply with Extension WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true WastewaterSludge MIXS:wastewater_sludge_data WastewaterSludge data
migs_ba_wastewater_sludge_data Data that comply with MigsBa combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MigsBaWastewaterSludge MIXS:migs_ba_wastewater_sludge_data MigsBaWastewaterSludge data
water_data Data that comply with Extension Water MixsCompliantData https://w3id.org/mixs true true water true Water MIXS:water_data Water data
migs_ba_water_data Data that comply with MigsBa combined with Water MixsCompliantData https://w3id.org/mixs true true true MigsBaWater MIXS:migs_ba_water_data MigsBaWater data
migs_eu_data Data that comply with checklist MigsEu MixsCompliantData https://w3id.org/mixs true true true MigsEu MIXS:migs_eu_data MigsEu data
migs_eu_agriculture_data Data that comply with MigsEu combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MigsEuAgriculture MIXS:migs_eu_agriculture_data MigsEuAgriculture data
migs_eu_air_data Data that comply with MigsEu combined with Air MixsCompliantData https://w3id.org/mixs true true true MigsEuAir MIXS:migs_eu_air_data MigsEuAir data
migs_eu_built_environment_data Data that comply with MigsEu combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsEuBuiltEnvironment MIXS:migs_eu_built_environment_data MigsEuBuiltEnvironment data
migs_eu_food_animal_and_animal_feed_data Data that comply with MigsEu combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MigsEuFoodAnimalAndAnimalFeed MIXS:migs_eu_food_animal_and_animal_feed_data MigsEuFoodAnimalAndAnimalFeed data
migs_eu_food_farm_environment_data Data that comply with MigsEu combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsEuFoodFarmEnvironment MIXS:migs_eu_food_farm_environment_data MigsEuFoodFarmEnvironment data
migs_eu_food_food_production_facility_data Data that comply with MigsEu combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MigsEuFoodFoodProductionFacility MIXS:migs_eu_food_food_production_facility_data MigsEuFoodFoodProductionFacility data
migs_eu_food_human_foods_data Data that comply with MigsEu combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MigsEuFoodHumanFoods MIXS:migs_eu_food_human_foods_data MigsEuFoodHumanFoods data
migs_eu_host_associated_data Data that comply with MigsEu combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MigsEuHostAssociated MIXS:migs_eu_host_associated_data MigsEuHostAssociated data
migs_eu_human_associated_data Data that comply with MigsEu combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MigsEuHumanAssociated MIXS:migs_eu_human_associated_data MigsEuHumanAssociated data
migs_eu_human_gut_data Data that comply with MigsEu combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MigsEuHumanGut MIXS:migs_eu_human_gut_data MigsEuHumanGut data
migs_eu_human_oral_data Data that comply with MigsEu combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MigsEuHumanOral MIXS:migs_eu_human_oral_data MigsEuHumanOral data
migs_eu_human_skin_data Data that comply with MigsEu combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MigsEuHumanSkin MIXS:migs_eu_human_skin_data MigsEuHumanSkin data
migs_eu_human_vaginal_data Data that comply with MigsEu combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MigsEuHumanVaginal MIXS:migs_eu_human_vaginal_data MigsEuHumanVaginal data
migs_eu_hydrocarbon_resources_cores_data Data that comply with MigsEu combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MigsEuHydrocarbonResourcesCores MIXS:migs_eu_hydrocarbon_resources_cores_data MigsEuHydrocarbonResourcesCores data
migs_eu_hydrocarbon_resources_fluids_swabs_data Data that comply with MigsEu combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MigsEuHydrocarbonResourcesFluidsSwabs MIXS:migs_eu_hydrocarbon_resources_fluids_swabs_data MigsEuHydrocarbonResourcesFluidsSwabs data
migs_eu_microbial_mat_biofilm_data Data that comply with MigsEu combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MigsEuMicrobialMatBiofilm MIXS:migs_eu_microbial_mat_biofilm_data MigsEuMicrobialMatBiofilm data
migs_eu_miscellaneous_natural_or_artificial_environment_data Data that comply with MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsEuMiscellaneousNaturalOrArtificialEnvironment MIXS:migs_eu_miscellaneous_natural_or_artificial_environment_data MigsEuMiscellaneousNaturalOrArtificialEnvironment data
migs_eu_plant_associated_data Data that comply with MigsEu combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MigsEuPlantAssociated MIXS:migs_eu_plant_associated_data MigsEuPlantAssociated data
migs_eu_sediment_data Data that comply with MigsEu combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MigsEuSediment MIXS:migs_eu_sediment_data MigsEuSediment data
migs_eu_soil_data Data that comply with MigsEu combined with Soil MixsCompliantData https://w3id.org/mixs true true true MigsEuSoil MIXS:migs_eu_soil_data MigsEuSoil data
migs_eu_symbiont_associated_data Data that comply with MigsEu combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MigsEuSymbiontAssociated MIXS:migs_eu_symbiont_associated_data MigsEuSymbiontAssociated data
migs_eu_wastewater_sludge_data Data that comply with MigsEu combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MigsEuWastewaterSludge MIXS:migs_eu_wastewater_sludge_data MigsEuWastewaterSludge data
migs_eu_water_data Data that comply with MigsEu combined with Water MixsCompliantData https://w3id.org/mixs true true true MigsEuWater MIXS:migs_eu_water_data MigsEuWater data
migs_org_data Data that comply with checklist MigsOrg MixsCompliantData https://w3id.org/mixs true true true MigsOrg MIXS:migs_org_data MigsOrg data
migs_org_agriculture_data Data that comply with MigsOrg combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MigsOrgAgriculture MIXS:migs_org_agriculture_data MigsOrgAgriculture data
migs_org_air_data Data that comply with MigsOrg combined with Air MixsCompliantData https://w3id.org/mixs true true true MigsOrgAir MIXS:migs_org_air_data MigsOrgAir data
migs_org_built_environment_data Data that comply with MigsOrg combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsOrgBuiltEnvironment MIXS:migs_org_built_environment_data MigsOrgBuiltEnvironment data
migs_org_food_animal_and_animal_feed_data Data that comply with MigsOrg combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MigsOrgFoodAnimalAndAnimalFeed MIXS:migs_org_food_animal_and_animal_feed_data MigsOrgFoodAnimalAndAnimalFeed data
migs_org_food_farm_environment_data Data that comply with MigsOrg combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsOrgFoodFarmEnvironment MIXS:migs_org_food_farm_environment_data MigsOrgFoodFarmEnvironment data
migs_org_food_food_production_facility_data Data that comply with MigsOrg combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MigsOrgFoodFoodProductionFacility MIXS:migs_org_food_food_production_facility_data MigsOrgFoodFoodProductionFacility data
migs_org_food_human_foods_data Data that comply with MigsOrg combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MigsOrgFoodHumanFoods MIXS:migs_org_food_human_foods_data MigsOrgFoodHumanFoods data
migs_org_host_associated_data Data that comply with MigsOrg combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MigsOrgHostAssociated MIXS:migs_org_host_associated_data MigsOrgHostAssociated data
migs_org_human_associated_data Data that comply with MigsOrg combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MigsOrgHumanAssociated MIXS:migs_org_human_associated_data MigsOrgHumanAssociated data
migs_org_human_gut_data Data that comply with MigsOrg combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MigsOrgHumanGut MIXS:migs_org_human_gut_data MigsOrgHumanGut data
migs_org_human_oral_data Data that comply with MigsOrg combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MigsOrgHumanOral MIXS:migs_org_human_oral_data MigsOrgHumanOral data
migs_org_human_skin_data Data that comply with MigsOrg combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MigsOrgHumanSkin MIXS:migs_org_human_skin_data MigsOrgHumanSkin data
migs_org_human_vaginal_data Data that comply with MigsOrg combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MigsOrgHumanVaginal MIXS:migs_org_human_vaginal_data MigsOrgHumanVaginal data
migs_org_hydrocarbon_resources_cores_data Data that comply with MigsOrg combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MigsOrgHydrocarbonResourcesCores MIXS:migs_org_hydrocarbon_resources_cores_data MigsOrgHydrocarbonResourcesCores data
migs_org_hydrocarbon_resources_fluids_swabs_data Data that comply with MigsOrg combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MigsOrgHydrocarbonResourcesFluidsSwabs MIXS:migs_org_hydrocarbon_resources_fluids_swabs_data MigsOrgHydrocarbonResourcesFluidsSwabs data
migs_org_microbial_mat_biofilm_data Data that comply with MigsOrg combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MigsOrgMicrobialMatBiofilm MIXS:migs_org_microbial_mat_biofilm_data MigsOrgMicrobialMatBiofilm data
migs_org_miscellaneous_natural_or_artificial_environment_data Data that comply with MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsOrgMiscellaneousNaturalOrArtificialEnvironment MIXS:migs_org_miscellaneous_natural_or_artificial_environment_data MigsOrgMiscellaneousNaturalOrArtificialEnvironment data
migs_org_plant_associated_data Data that comply with MigsOrg combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MigsOrgPlantAssociated MIXS:migs_org_plant_associated_data MigsOrgPlantAssociated data
migs_org_sediment_data Data that comply with MigsOrg combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MigsOrgSediment MIXS:migs_org_sediment_data MigsOrgSediment data
migs_org_soil_data Data that comply with MigsOrg combined with Soil MixsCompliantData https://w3id.org/mixs true true true MigsOrgSoil MIXS:migs_org_soil_data MigsOrgSoil data
migs_org_symbiont_associated_data Data that comply with MigsOrg combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MigsOrgSymbiontAssociated MIXS:migs_org_symbiont_associated_data MigsOrgSymbiontAssociated data
migs_org_wastewater_sludge_data Data that comply with MigsOrg combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MigsOrgWastewaterSludge MIXS:migs_org_wastewater_sludge_data MigsOrgWastewaterSludge data
migs_org_water_data Data that comply with MigsOrg combined with Water MixsCompliantData https://w3id.org/mixs true true true MigsOrgWater MIXS:migs_org_water_data MigsOrgWater data
migs_pl_data Data that comply with checklist MigsPl MixsCompliantData https://w3id.org/mixs true true true MigsPl MIXS:migs_pl_data MigsPl data
migs_pl_agriculture_data Data that comply with MigsPl combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MigsPlAgriculture MIXS:migs_pl_agriculture_data MigsPlAgriculture data
migs_pl_air_data Data that comply with MigsPl combined with Air MixsCompliantData https://w3id.org/mixs true true true MigsPlAir MIXS:migs_pl_air_data MigsPlAir data
migs_pl_built_environment_data Data that comply with MigsPl combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsPlBuiltEnvironment MIXS:migs_pl_built_environment_data MigsPlBuiltEnvironment data
migs_pl_food_animal_and_animal_feed_data Data that comply with MigsPl combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MigsPlFoodAnimalAndAnimalFeed MIXS:migs_pl_food_animal_and_animal_feed_data MigsPlFoodAnimalAndAnimalFeed data
migs_pl_food_farm_environment_data Data that comply with MigsPl combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsPlFoodFarmEnvironment MIXS:migs_pl_food_farm_environment_data MigsPlFoodFarmEnvironment data
migs_pl_food_food_production_facility_data Data that comply with MigsPl combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MigsPlFoodFoodProductionFacility MIXS:migs_pl_food_food_production_facility_data MigsPlFoodFoodProductionFacility data
migs_pl_food_human_foods_data Data that comply with MigsPl combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MigsPlFoodHumanFoods MIXS:migs_pl_food_human_foods_data MigsPlFoodHumanFoods data
migs_pl_host_associated_data Data that comply with MigsPl combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MigsPlHostAssociated MIXS:migs_pl_host_associated_data MigsPlHostAssociated data
migs_pl_human_associated_data Data that comply with MigsPl combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MigsPlHumanAssociated MIXS:migs_pl_human_associated_data MigsPlHumanAssociated data
migs_pl_human_gut_data Data that comply with MigsPl combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MigsPlHumanGut MIXS:migs_pl_human_gut_data MigsPlHumanGut data
migs_pl_human_oral_data Data that comply with MigsPl combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MigsPlHumanOral MIXS:migs_pl_human_oral_data MigsPlHumanOral data
migs_pl_human_skin_data Data that comply with MigsPl combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MigsPlHumanSkin MIXS:migs_pl_human_skin_data MigsPlHumanSkin data
migs_pl_human_vaginal_data Data that comply with MigsPl combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MigsPlHumanVaginal MIXS:migs_pl_human_vaginal_data MigsPlHumanVaginal data
migs_pl_hydrocarbon_resources_cores_data Data that comply with MigsPl combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MigsPlHydrocarbonResourcesCores MIXS:migs_pl_hydrocarbon_resources_cores_data MigsPlHydrocarbonResourcesCores data
migs_pl_hydrocarbon_resources_fluids_swabs_data Data that comply with MigsPl combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MigsPlHydrocarbonResourcesFluidsSwabs MIXS:migs_pl_hydrocarbon_resources_fluids_swabs_data MigsPlHydrocarbonResourcesFluidsSwabs data
migs_pl_microbial_mat_biofilm_data Data that comply with MigsPl combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MigsPlMicrobialMatBiofilm MIXS:migs_pl_microbial_mat_biofilm_data MigsPlMicrobialMatBiofilm data
migs_pl_miscellaneous_natural_or_artificial_environment_data Data that comply with MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsPlMiscellaneousNaturalOrArtificialEnvironment MIXS:migs_pl_miscellaneous_natural_or_artificial_environment_data MigsPlMiscellaneousNaturalOrArtificialEnvironment data
migs_pl_plant_associated_data Data that comply with MigsPl combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MigsPlPlantAssociated MIXS:migs_pl_plant_associated_data MigsPlPlantAssociated data
migs_pl_sediment_data Data that comply with MigsPl combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MigsPlSediment MIXS:migs_pl_sediment_data MigsPlSediment data
migs_pl_soil_data Data that comply with MigsPl combined with Soil MixsCompliantData https://w3id.org/mixs true true true MigsPlSoil MIXS:migs_pl_soil_data MigsPlSoil data
migs_pl_symbiont_associated_data Data that comply with MigsPl combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MigsPlSymbiontAssociated MIXS:migs_pl_symbiont_associated_data MigsPlSymbiontAssociated data
migs_pl_wastewater_sludge_data Data that comply with MigsPl combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MigsPlWastewaterSludge MIXS:migs_pl_wastewater_sludge_data MigsPlWastewaterSludge data
migs_pl_water_data Data that comply with MigsPl combined with Water MixsCompliantData https://w3id.org/mixs true true true MigsPlWater MIXS:migs_pl_water_data MigsPlWater data
migs_vi_data Data that comply with checklist MigsVi MixsCompliantData https://w3id.org/mixs true true true MigsVi MIXS:migs_vi_data MigsVi data
migs_vi_agriculture_data Data that comply with MigsVi combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MigsViAgriculture MIXS:migs_vi_agriculture_data MigsViAgriculture data
migs_vi_air_data Data that comply with MigsVi combined with Air MixsCompliantData https://w3id.org/mixs true true true MigsViAir MIXS:migs_vi_air_data MigsViAir data
migs_vi_built_environment_data Data that comply with MigsVi combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsViBuiltEnvironment MIXS:migs_vi_built_environment_data MigsViBuiltEnvironment data
migs_vi_food_animal_and_animal_feed_data Data that comply with MigsVi combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MigsViFoodAnimalAndAnimalFeed MIXS:migs_vi_food_animal_and_animal_feed_data MigsViFoodAnimalAndAnimalFeed data
migs_vi_food_farm_environment_data Data that comply with MigsVi combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsViFoodFarmEnvironment MIXS:migs_vi_food_farm_environment_data MigsViFoodFarmEnvironment data
migs_vi_food_food_production_facility_data Data that comply with MigsVi combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MigsViFoodFoodProductionFacility MIXS:migs_vi_food_food_production_facility_data MigsViFoodFoodProductionFacility data
migs_vi_food_human_foods_data Data that comply with MigsVi combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MigsViFoodHumanFoods MIXS:migs_vi_food_human_foods_data MigsViFoodHumanFoods data
migs_vi_host_associated_data Data that comply with MigsVi combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MigsViHostAssociated MIXS:migs_vi_host_associated_data MigsViHostAssociated data
migs_vi_human_associated_data Data that comply with MigsVi combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MigsViHumanAssociated MIXS:migs_vi_human_associated_data MigsViHumanAssociated data
migs_vi_human_gut_data Data that comply with MigsVi combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MigsViHumanGut MIXS:migs_vi_human_gut_data MigsViHumanGut data
migs_vi_human_oral_data Data that comply with MigsVi combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MigsViHumanOral MIXS:migs_vi_human_oral_data MigsViHumanOral data
migs_vi_human_skin_data Data that comply with MigsVi combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MigsViHumanSkin MIXS:migs_vi_human_skin_data MigsViHumanSkin data
migs_vi_human_vaginal_data Data that comply with MigsVi combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MigsViHumanVaginal MIXS:migs_vi_human_vaginal_data MigsViHumanVaginal data
migs_vi_hydrocarbon_resources_cores_data Data that comply with MigsVi combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MigsViHydrocarbonResourcesCores MIXS:migs_vi_hydrocarbon_resources_cores_data MigsViHydrocarbonResourcesCores data
migs_vi_hydrocarbon_resources_fluids_swabs_data Data that comply with MigsVi combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MigsViHydrocarbonResourcesFluidsSwabs MIXS:migs_vi_hydrocarbon_resources_fluids_swabs_data MigsViHydrocarbonResourcesFluidsSwabs data
migs_vi_microbial_mat_biofilm_data Data that comply with MigsVi combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MigsViMicrobialMatBiofilm MIXS:migs_vi_microbial_mat_biofilm_data MigsViMicrobialMatBiofilm data
migs_vi_miscellaneous_natural_or_artificial_environment_data Data that comply with MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MigsViMiscellaneousNaturalOrArtificialEnvironment MIXS:migs_vi_miscellaneous_natural_or_artificial_environment_data MigsViMiscellaneousNaturalOrArtificialEnvironment data
migs_vi_plant_associated_data Data that comply with MigsVi combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MigsViPlantAssociated MIXS:migs_vi_plant_associated_data MigsViPlantAssociated data
migs_vi_sediment_data Data that comply with MigsVi combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MigsViSediment MIXS:migs_vi_sediment_data MigsViSediment data
migs_vi_soil_data Data that comply with MigsVi combined with Soil MixsCompliantData https://w3id.org/mixs true true true MigsViSoil MIXS:migs_vi_soil_data MigsViSoil data
migs_vi_symbiont_associated_data Data that comply with MigsVi combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MigsViSymbiontAssociated MIXS:migs_vi_symbiont_associated_data MigsViSymbiontAssociated data
migs_vi_wastewater_sludge_data Data that comply with MigsVi combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MigsViWastewaterSludge MIXS:migs_vi_wastewater_sludge_data MigsViWastewaterSludge data
migs_vi_water_data Data that comply with MigsVi combined with Water MixsCompliantData https://w3id.org/mixs true true true MigsViWater MIXS:migs_vi_water_data MigsViWater data
mimag_data Data that comply with checklist Mimag MixsCompliantData https://w3id.org/mixs true true true Mimag MIXS:mimag_data Mimag data
mimag_agriculture_data Data that comply with Mimag combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MimagAgriculture MIXS:mimag_agriculture_data MimagAgriculture data
mimag_air_data Data that comply with Mimag combined with Air MixsCompliantData https://w3id.org/mixs true true true MimagAir MIXS:mimag_air_data MimagAir data
mimag_built_environment_data Data that comply with Mimag combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MimagBuiltEnvironment MIXS:mimag_built_environment_data MimagBuiltEnvironment data
mimag_food_animal_and_animal_feed_data Data that comply with Mimag combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MimagFoodAnimalAndAnimalFeed MIXS:mimag_food_animal_and_animal_feed_data MimagFoodAnimalAndAnimalFeed data
mimag_food_farm_environment_data Data that comply with Mimag combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MimagFoodFarmEnvironment MIXS:mimag_food_farm_environment_data MimagFoodFarmEnvironment data
mimag_food_food_production_facility_data Data that comply with Mimag combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MimagFoodFoodProductionFacility MIXS:mimag_food_food_production_facility_data MimagFoodFoodProductionFacility data
mimag_food_human_foods_data Data that comply with Mimag combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MimagFoodHumanFoods MIXS:mimag_food_human_foods_data MimagFoodHumanFoods data
mimag_host_associated_data Data that comply with Mimag combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MimagHostAssociated MIXS:mimag_host_associated_data MimagHostAssociated data
mimag_human_associated_data Data that comply with Mimag combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MimagHumanAssociated MIXS:mimag_human_associated_data MimagHumanAssociated data
mimag_human_gut_data Data that comply with Mimag combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MimagHumanGut MIXS:mimag_human_gut_data MimagHumanGut data
mimag_human_oral_data Data that comply with Mimag combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MimagHumanOral MIXS:mimag_human_oral_data MimagHumanOral data
mimag_human_skin_data Data that comply with Mimag combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MimagHumanSkin MIXS:mimag_human_skin_data MimagHumanSkin data
mimag_human_vaginal_data Data that comply with Mimag combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MimagHumanVaginal MIXS:mimag_human_vaginal_data MimagHumanVaginal data
mimag_hydrocarbon_resources_cores_data Data that comply with Mimag combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MimagHydrocarbonResourcesCores MIXS:mimag_hydrocarbon_resources_cores_data MimagHydrocarbonResourcesCores data
mimag_hydrocarbon_resources_fluids_swabs_data Data that comply with Mimag combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MimagHydrocarbonResourcesFluidsSwabs MIXS:mimag_hydrocarbon_resources_fluids_swabs_data MimagHydrocarbonResourcesFluidsSwabs data
mimag_microbial_mat_biofilm_data Data that comply with Mimag combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MimagMicrobialMatBiofilm MIXS:mimag_microbial_mat_biofilm_data MimagMicrobialMatBiofilm data
mimag_miscellaneous_natural_or_artificial_environment_data Data that comply with Mimag combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MimagMiscellaneousNaturalOrArtificialEnvironment MIXS:mimag_miscellaneous_natural_or_artificial_environment_data MimagMiscellaneousNaturalOrArtificialEnvironment data
mimag_plant_associated_data Data that comply with Mimag combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MimagPlantAssociated MIXS:mimag_plant_associated_data MimagPlantAssociated data
mimag_sediment_data Data that comply with Mimag combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MimagSediment MIXS:mimag_sediment_data MimagSediment data
mimag_soil_data Data that comply with Mimag combined with Soil MixsCompliantData https://w3id.org/mixs true true true MimagSoil MIXS:mimag_soil_data MimagSoil data
mimag_symbiont_associated_data Data that comply with Mimag combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MimagSymbiontAssociated MIXS:mimag_symbiont_associated_data MimagSymbiontAssociated data
mimag_wastewater_sludge_data Data that comply with Mimag combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MimagWastewaterSludge MIXS:mimag_wastewater_sludge_data MimagWastewaterSludge data
mimag_water_data Data that comply with Mimag combined with Water MixsCompliantData https://w3id.org/mixs true true true MimagWater MIXS:mimag_water_data MimagWater data
mimarks_c_data Data that comply with checklist MimarksC MixsCompliantData https://w3id.org/mixs true true true MimarksC MIXS:mimarks_c_data MimarksC data
mimarks_c_agriculture_data Data that comply with MimarksC combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MimarksCAgriculture MIXS:mimarks_c_agriculture_data MimarksCAgriculture data
mimarks_c_air_data Data that comply with MimarksC combined with Air MixsCompliantData https://w3id.org/mixs true true true MimarksCAir MIXS:mimarks_c_air_data MimarksCAir data
mimarks_c_built_environment_data Data that comply with MimarksC combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksCBuiltEnvironment MIXS:mimarks_c_built_environment_data MimarksCBuiltEnvironment data
mimarks_c_food_animal_and_animal_feed_data Data that comply with MimarksC combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MimarksCFoodAnimalAndAnimalFeed MIXS:mimarks_c_food_animal_and_animal_feed_data MimarksCFoodAnimalAndAnimalFeed data
mimarks_c_food_farm_environment_data Data that comply with MimarksC combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksCFoodFarmEnvironment MIXS:mimarks_c_food_farm_environment_data MimarksCFoodFarmEnvironment data
mimarks_c_food_food_production_facility_data Data that comply with MimarksC combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MimarksCFoodFoodProductionFacility MIXS:mimarks_c_food_food_production_facility_data MimarksCFoodFoodProductionFacility data
mimarks_c_food_human_foods_data Data that comply with MimarksC combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MimarksCFoodHumanFoods MIXS:mimarks_c_food_human_foods_data MimarksCFoodHumanFoods data
mimarks_c_host_associated_data Data that comply with MimarksC combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksCHostAssociated MIXS:mimarks_c_host_associated_data MimarksCHostAssociated data
mimarks_c_human_associated_data Data that comply with MimarksC combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksCHumanAssociated MIXS:mimarks_c_human_associated_data MimarksCHumanAssociated data
mimarks_c_human_gut_data Data that comply with MimarksC combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MimarksCHumanGut MIXS:mimarks_c_human_gut_data MimarksCHumanGut data
mimarks_c_human_oral_data Data that comply with MimarksC combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MimarksCHumanOral MIXS:mimarks_c_human_oral_data MimarksCHumanOral data
mimarks_c_human_skin_data Data that comply with MimarksC combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MimarksCHumanSkin MIXS:mimarks_c_human_skin_data MimarksCHumanSkin data
mimarks_c_human_vaginal_data Data that comply with MimarksC combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MimarksCHumanVaginal MIXS:mimarks_c_human_vaginal_data MimarksCHumanVaginal data
mimarks_c_hydrocarbon_resources_cores_data Data that comply with MimarksC combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MimarksCHydrocarbonResourcesCores MIXS:mimarks_c_hydrocarbon_resources_cores_data MimarksCHydrocarbonResourcesCores data
mimarks_c_hydrocarbon_resources_fluids_swabs_data Data that comply with MimarksC combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MimarksCHydrocarbonResourcesFluidsSwabs MIXS:mimarks_c_hydrocarbon_resources_fluids_swabs_data MimarksCHydrocarbonResourcesFluidsSwabs data
mimarks_c_microbial_mat_biofilm_data Data that comply with MimarksC combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MimarksCMicrobialMatBiofilm MIXS:mimarks_c_microbial_mat_biofilm_data MimarksCMicrobialMatBiofilm data
mimarks_c_miscellaneous_natural_or_artificial_environment_data Data that comply with MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksCMiscellaneousNaturalOrArtificialEnvironment MIXS:mimarks_c_miscellaneous_natural_or_artificial_environment_data MimarksCMiscellaneousNaturalOrArtificialEnvironment data
mimarks_c_plant_associated_data Data that comply with MimarksC combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksCPlantAssociated MIXS:mimarks_c_plant_associated_data MimarksCPlantAssociated data
mimarks_c_sediment_data Data that comply with MimarksC combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MimarksCSediment MIXS:mimarks_c_sediment_data MimarksCSediment data
mimarks_c_soil_data Data that comply with MimarksC combined with Soil MixsCompliantData https://w3id.org/mixs true true true MimarksCSoil MIXS:mimarks_c_soil_data MimarksCSoil data
mimarks_c_symbiont_associated_data Data that comply with MimarksC combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksCSymbiontAssociated MIXS:mimarks_c_symbiont_associated_data MimarksCSymbiontAssociated data
mimarks_c_wastewater_sludge_data Data that comply with MimarksC combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MimarksCWastewaterSludge MIXS:mimarks_c_wastewater_sludge_data MimarksCWastewaterSludge data
mimarks_c_water_data Data that comply with MimarksC combined with Water MixsCompliantData https://w3id.org/mixs true true true MimarksCWater MIXS:mimarks_c_water_data MimarksCWater data
mimarks_s_data Data that comply with checklist MimarksS MixsCompliantData https://w3id.org/mixs true true true MimarksS MIXS:mimarks_s_data MimarksS data
mimarks_s_agriculture_data Data that comply with MimarksS combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MimarksSAgriculture MIXS:mimarks_s_agriculture_data MimarksSAgriculture data
mimarks_s_air_data Data that comply with MimarksS combined with Air MixsCompliantData https://w3id.org/mixs true true true MimarksSAir MIXS:mimarks_s_air_data MimarksSAir data
mimarks_s_built_environment_data Data that comply with MimarksS combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksSBuiltEnvironment MIXS:mimarks_s_built_environment_data MimarksSBuiltEnvironment data
mimarks_s_food_animal_and_animal_feed_data Data that comply with MimarksS combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MimarksSFoodAnimalAndAnimalFeed MIXS:mimarks_s_food_animal_and_animal_feed_data MimarksSFoodAnimalAndAnimalFeed data
mimarks_s_food_farm_environment_data Data that comply with MimarksS combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksSFoodFarmEnvironment MIXS:mimarks_s_food_farm_environment_data MimarksSFoodFarmEnvironment data
mimarks_s_food_food_production_facility_data Data that comply with MimarksS combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MimarksSFoodFoodProductionFacility MIXS:mimarks_s_food_food_production_facility_data MimarksSFoodFoodProductionFacility data
mimarks_s_food_human_foods_data Data that comply with MimarksS combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MimarksSFoodHumanFoods MIXS:mimarks_s_food_human_foods_data MimarksSFoodHumanFoods data
mimarks_s_host_associated_data Data that comply with MimarksS combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksSHostAssociated MIXS:mimarks_s_host_associated_data MimarksSHostAssociated data
mimarks_s_human_associated_data Data that comply with MimarksS combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksSHumanAssociated MIXS:mimarks_s_human_associated_data MimarksSHumanAssociated data
mimarks_s_human_gut_data Data that comply with MimarksS combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MimarksSHumanGut MIXS:mimarks_s_human_gut_data MimarksSHumanGut data
mimarks_s_human_oral_data Data that comply with MimarksS combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MimarksSHumanOral MIXS:mimarks_s_human_oral_data MimarksSHumanOral data
mimarks_s_human_skin_data Data that comply with MimarksS combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MimarksSHumanSkin MIXS:mimarks_s_human_skin_data MimarksSHumanSkin data
mimarks_s_human_vaginal_data Data that comply with MimarksS combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MimarksSHumanVaginal MIXS:mimarks_s_human_vaginal_data MimarksSHumanVaginal data
mimarks_s_hydrocarbon_resources_cores_data Data that comply with MimarksS combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MimarksSHydrocarbonResourcesCores MIXS:mimarks_s_hydrocarbon_resources_cores_data MimarksSHydrocarbonResourcesCores data
mimarks_s_hydrocarbon_resources_fluids_swabs_data Data that comply with MimarksS combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MimarksSHydrocarbonResourcesFluidsSwabs MIXS:mimarks_s_hydrocarbon_resources_fluids_swabs_data MimarksSHydrocarbonResourcesFluidsSwabs data
mimarks_s_microbial_mat_biofilm_data Data that comply with MimarksS combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MimarksSMicrobialMatBiofilm MIXS:mimarks_s_microbial_mat_biofilm_data MimarksSMicrobialMatBiofilm data
mimarks_s_miscellaneous_natural_or_artificial_environment_data Data that comply with MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MimarksSMiscellaneousNaturalOrArtificialEnvironment MIXS:mimarks_s_miscellaneous_natural_or_artificial_environment_data MimarksSMiscellaneousNaturalOrArtificialEnvironment data
mimarks_s_plant_associated_data Data that comply with MimarksS combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksSPlantAssociated MIXS:mimarks_s_plant_associated_data MimarksSPlantAssociated data
mimarks_s_sediment_data Data that comply with MimarksS combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MimarksSSediment MIXS:mimarks_s_sediment_data MimarksSSediment data
mimarks_s_soil_data Data that comply with MimarksS combined with Soil MixsCompliantData https://w3id.org/mixs true true true MimarksSSoil MIXS:mimarks_s_soil_data MimarksSSoil data
mimarks_s_symbiont_associated_data Data that comply with MimarksS combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MimarksSSymbiontAssociated MIXS:mimarks_s_symbiont_associated_data MimarksSSymbiontAssociated data
mimarks_s_wastewater_sludge_data Data that comply with MimarksS combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MimarksSWastewaterSludge MIXS:mimarks_s_wastewater_sludge_data MimarksSWastewaterSludge data
mimarks_s_water_data Data that comply with MimarksS combined with Water MixsCompliantData https://w3id.org/mixs true true true MimarksSWater MIXS:mimarks_s_water_data MimarksSWater data
mims_data Data that comply with checklist Mims MixsCompliantData https://w3id.org/mixs true true true Mims MIXS:mims_data Mims data
mims_agriculture_data Data that comply with Mims combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MimsAgriculture MIXS:mims_agriculture_data MimsAgriculture data
mims_air_data Data that comply with Mims combined with Air MixsCompliantData https://w3id.org/mixs true true true MimsAir MIXS:mims_air_data MimsAir data
mims_built_environment_data Data that comply with Mims combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MimsBuiltEnvironment MIXS:mims_built_environment_data MimsBuiltEnvironment data
mims_food_animal_and_animal_feed_data Data that comply with Mims combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MimsFoodAnimalAndAnimalFeed MIXS:mims_food_animal_and_animal_feed_data MimsFoodAnimalAndAnimalFeed data
mims_food_farm_environment_data Data that comply with Mims combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MimsFoodFarmEnvironment MIXS:mims_food_farm_environment_data MimsFoodFarmEnvironment data
mims_food_food_production_facility_data Data that comply with Mims combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MimsFoodFoodProductionFacility MIXS:mims_food_food_production_facility_data MimsFoodFoodProductionFacility data
mims_food_human_foods_data Data that comply with Mims combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MimsFoodHumanFoods MIXS:mims_food_human_foods_data MimsFoodHumanFoods data
mims_host_associated_data Data that comply with Mims combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MimsHostAssociated MIXS:mims_host_associated_data MimsHostAssociated data
mims_human_associated_data Data that comply with Mims combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MimsHumanAssociated MIXS:mims_human_associated_data MimsHumanAssociated data
mims_human_gut_data Data that comply with Mims combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MimsHumanGut MIXS:mims_human_gut_data MimsHumanGut data
mims_human_oral_data Data that comply with Mims combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MimsHumanOral MIXS:mims_human_oral_data MimsHumanOral data
mims_human_skin_data Data that comply with Mims combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MimsHumanSkin MIXS:mims_human_skin_data MimsHumanSkin data
mims_human_vaginal_data Data that comply with Mims combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MimsHumanVaginal MIXS:mims_human_vaginal_data MimsHumanVaginal data
mims_hydrocarbon_resources_cores_data Data that comply with Mims combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MimsHydrocarbonResourcesCores MIXS:mims_hydrocarbon_resources_cores_data MimsHydrocarbonResourcesCores data
mims_hydrocarbon_resources_fluids_swabs_data Data that comply with Mims combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MimsHydrocarbonResourcesFluidsSwabs MIXS:mims_hydrocarbon_resources_fluids_swabs_data MimsHydrocarbonResourcesFluidsSwabs data
mims_microbial_mat_biofilm_data Data that comply with Mims combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MimsMicrobialMatBiofilm MIXS:mims_microbial_mat_biofilm_data MimsMicrobialMatBiofilm data
mims_miscellaneous_natural_or_artificial_environment_data Data that comply with Mims combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MimsMiscellaneousNaturalOrArtificialEnvironment MIXS:mims_miscellaneous_natural_or_artificial_environment_data MimsMiscellaneousNaturalOrArtificialEnvironment data
mims_plant_associated_data Data that comply with Mims combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MimsPlantAssociated MIXS:mims_plant_associated_data MimsPlantAssociated data
mims_sediment_data Data that comply with Mims combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MimsSediment MIXS:mims_sediment_data MimsSediment data
mims_soil_data Data that comply with Mims combined with Soil MixsCompliantData https://w3id.org/mixs true true true MimsSoil MIXS:mims_soil_data MimsSoil data
mims_symbiont_associated_data Data that comply with Mims combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MimsSymbiontAssociated MIXS:mims_symbiont_associated_data MimsSymbiontAssociated data
mims_wastewater_sludge_data Data that comply with Mims combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MimsWastewaterSludge MIXS:mims_wastewater_sludge_data MimsWastewaterSludge data
mims_water_data Data that comply with Mims combined with Water MixsCompliantData https://w3id.org/mixs true true true MimsWater MIXS:mims_water_data MimsWater data
misag_data Data that comply with checklist Misag MixsCompliantData https://w3id.org/mixs true true true Misag MIXS:misag_data Misag data
misag_agriculture_data Data that comply with Misag combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MisagAgriculture MIXS:misag_agriculture_data MisagAgriculture data
misag_air_data Data that comply with Misag combined with Air MixsCompliantData https://w3id.org/mixs true true true MisagAir MIXS:misag_air_data MisagAir data
misag_built_environment_data Data that comply with Misag combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MisagBuiltEnvironment MIXS:misag_built_environment_data MisagBuiltEnvironment data
misag_food_animal_and_animal_feed_data Data that comply with Misag combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MisagFoodAnimalAndAnimalFeed MIXS:misag_food_animal_and_animal_feed_data MisagFoodAnimalAndAnimalFeed data
misag_food_farm_environment_data Data that comply with Misag combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MisagFoodFarmEnvironment MIXS:misag_food_farm_environment_data MisagFoodFarmEnvironment data
misag_food_food_production_facility_data Data that comply with Misag combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MisagFoodFoodProductionFacility MIXS:misag_food_food_production_facility_data MisagFoodFoodProductionFacility data
misag_food_human_foods_data Data that comply with Misag combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MisagFoodHumanFoods MIXS:misag_food_human_foods_data MisagFoodHumanFoods data
misag_host_associated_data Data that comply with Misag combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MisagHostAssociated MIXS:misag_host_associated_data MisagHostAssociated data
misag_human_associated_data Data that comply with Misag combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MisagHumanAssociated MIXS:misag_human_associated_data MisagHumanAssociated data
misag_human_gut_data Data that comply with Misag combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MisagHumanGut MIXS:misag_human_gut_data MisagHumanGut data
misag_human_oral_data Data that comply with Misag combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MisagHumanOral MIXS:misag_human_oral_data MisagHumanOral data
misag_human_skin_data Data that comply with Misag combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MisagHumanSkin MIXS:misag_human_skin_data MisagHumanSkin data
misag_human_vaginal_data Data that comply with Misag combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MisagHumanVaginal MIXS:misag_human_vaginal_data MisagHumanVaginal data
misag_hydrocarbon_resources_cores_data Data that comply with Misag combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MisagHydrocarbonResourcesCores MIXS:misag_hydrocarbon_resources_cores_data MisagHydrocarbonResourcesCores data
misag_hydrocarbon_resources_fluids_swabs_data Data that comply with Misag combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MisagHydrocarbonResourcesFluidsSwabs MIXS:misag_hydrocarbon_resources_fluids_swabs_data MisagHydrocarbonResourcesFluidsSwabs data
misag_microbial_mat_biofilm_data Data that comply with Misag combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MisagMicrobialMatBiofilm MIXS:misag_microbial_mat_biofilm_data MisagMicrobialMatBiofilm data
misag_miscellaneous_natural_or_artificial_environment_data Data that comply with Misag combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MisagMiscellaneousNaturalOrArtificialEnvironment MIXS:misag_miscellaneous_natural_or_artificial_environment_data MisagMiscellaneousNaturalOrArtificialEnvironment data
misag_plant_associated_data Data that comply with Misag combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MisagPlantAssociated MIXS:misag_plant_associated_data MisagPlantAssociated data
misag_sediment_data Data that comply with Misag combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MisagSediment MIXS:misag_sediment_data MisagSediment data
misag_soil_data Data that comply with Misag combined with Soil MixsCompliantData https://w3id.org/mixs true true true MisagSoil MIXS:misag_soil_data MisagSoil data
misag_symbiont_associated_data Data that comply with Misag combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MisagSymbiontAssociated MIXS:misag_symbiont_associated_data MisagSymbiontAssociated data
misag_wastewater_sludge_data Data that comply with Misag combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MisagWastewaterSludge MIXS:misag_wastewater_sludge_data MisagWastewaterSludge data
misag_water_data Data that comply with Misag combined with Water MixsCompliantData https://w3id.org/mixs true true true MisagWater MIXS:misag_water_data MisagWater data
miuvig_data Data that comply with checklist Miuvig MixsCompliantData https://w3id.org/mixs true true true Miuvig MIXS:miuvig_data Miuvig data
miuvig_agriculture_data Data that comply with Miuvig combined with Agriculture MixsCompliantData https://w3id.org/mixs true true true MiuvigAgriculture MIXS:miuvig_agriculture_data MiuvigAgriculture data
miuvig_air_data Data that comply with Miuvig combined with Air MixsCompliantData https://w3id.org/mixs true true true MiuvigAir MIXS:miuvig_air_data MiuvigAir data
miuvig_built_environment_data Data that comply with Miuvig combined with BuiltEnvironment MixsCompliantData https://w3id.org/mixs true true true MiuvigBuiltEnvironment MIXS:miuvig_built_environment_data MiuvigBuiltEnvironment data
miuvig_food_animal_and_animal_feed_data Data that comply with Miuvig combined with FoodAnimalAndAnimalFeed MixsCompliantData https://w3id.org/mixs true true true MiuvigFoodAnimalAndAnimalFeed MIXS:miuvig_food_animal_and_animal_feed_data MiuvigFoodAnimalAndAnimalFeed data
miuvig_food_farm_environment_data Data that comply with Miuvig combined with FoodFarmEnvironment MixsCompliantData https://w3id.org/mixs true true true MiuvigFoodFarmEnvironment MIXS:miuvig_food_farm_environment_data MiuvigFoodFarmEnvironment data
miuvig_food_food_production_facility_data Data that comply with Miuvig combined with FoodFoodProductionFacility MixsCompliantData https://w3id.org/mixs true true true MiuvigFoodFoodProductionFacility MIXS:miuvig_food_food_production_facility_data MiuvigFoodFoodProductionFacility data
miuvig_food_human_foods_data Data that comply with Miuvig combined with FoodHumanFoods MixsCompliantData https://w3id.org/mixs true true true MiuvigFoodHumanFoods MIXS:miuvig_food_human_foods_data MiuvigFoodHumanFoods data
miuvig_host_associated_data Data that comply with Miuvig combined with HostAssociated MixsCompliantData https://w3id.org/mixs true true true MiuvigHostAssociated MIXS:miuvig_host_associated_data MiuvigHostAssociated data
miuvig_human_associated_data Data that comply with Miuvig combined with HumanAssociated MixsCompliantData https://w3id.org/mixs true true true MiuvigHumanAssociated MIXS:miuvig_human_associated_data MiuvigHumanAssociated data
miuvig_human_gut_data Data that comply with Miuvig combined with HumanGut MixsCompliantData https://w3id.org/mixs true true true MiuvigHumanGut MIXS:miuvig_human_gut_data MiuvigHumanGut data
miuvig_human_oral_data Data that comply with Miuvig combined with HumanOral MixsCompliantData https://w3id.org/mixs true true true MiuvigHumanOral MIXS:miuvig_human_oral_data MiuvigHumanOral data
miuvig_human_skin_data Data that comply with Miuvig combined with HumanSkin MixsCompliantData https://w3id.org/mixs true true true MiuvigHumanSkin MIXS:miuvig_human_skin_data MiuvigHumanSkin data
miuvig_human_vaginal_data Data that comply with Miuvig combined with HumanVaginal MixsCompliantData https://w3id.org/mixs true true true MiuvigHumanVaginal MIXS:miuvig_human_vaginal_data MiuvigHumanVaginal data
miuvig_hydrocarbon_resources_cores_data Data that comply with Miuvig combined with HydrocarbonResourcesCores MixsCompliantData https://w3id.org/mixs true true true MiuvigHydrocarbonResourcesCores MIXS:miuvig_hydrocarbon_resources_cores_data MiuvigHydrocarbonResourcesCores data
miuvig_hydrocarbon_resources_fluids_swabs_data Data that comply with Miuvig combined with HydrocarbonResourcesFluidsSwabs MixsCompliantData https://w3id.org/mixs true true true MiuvigHydrocarbonResourcesFluidsSwabs MIXS:miuvig_hydrocarbon_resources_fluids_swabs_data MiuvigHydrocarbonResourcesFluidsSwabs data
miuvig_microbial_mat_biofilm_data Data that comply with Miuvig combined with MicrobialMatBiofilm MixsCompliantData https://w3id.org/mixs true true true MiuvigMicrobialMatBiofilm MIXS:miuvig_microbial_mat_biofilm_data MiuvigMicrobialMatBiofilm data
miuvig_miscellaneous_natural_or_artificial_environment_data Data that comply with Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment MixsCompliantData https://w3id.org/mixs true true true MiuvigMiscellaneousNaturalOrArtificialEnvironment MIXS:miuvig_miscellaneous_natural_or_artificial_environment_data MiuvigMiscellaneousNaturalOrArtificialEnvironment data
miuvig_plant_associated_data Data that comply with Miuvig combined with PlantAssociated MixsCompliantData https://w3id.org/mixs true true true MiuvigPlantAssociated MIXS:miuvig_plant_associated_data MiuvigPlantAssociated data
miuvig_sediment_data Data that comply with Miuvig combined with Sediment MixsCompliantData https://w3id.org/mixs true true true MiuvigSediment MIXS:miuvig_sediment_data MiuvigSediment data
miuvig_soil_data Data that comply with Miuvig combined with Soil MixsCompliantData https://w3id.org/mixs true true true MiuvigSoil MIXS:miuvig_soil_data MiuvigSoil data
miuvig_symbiont_associated_data Data that comply with Miuvig combined with SymbiontAssociated MixsCompliantData https://w3id.org/mixs true true true MiuvigSymbiontAssociated MIXS:miuvig_symbiont_associated_data MiuvigSymbiontAssociated data
miuvig_wastewater_sludge_data Data that comply with Miuvig combined with WastewaterSludge MixsCompliantData https://w3id.org/mixs true true true MiuvigWastewaterSludge MIXS:miuvig_wastewater_sludge_data MiuvigWastewaterSludge data
miuvig_water_data Data that comply with Miuvig combined with Water MixsCompliantData https://w3id.org/mixs true true true MiuvigWater MIXS:miuvig_water_data MiuvigWater data
HACCP_term tetrodotoxic poisoning [FOODON:03530249] ^{termLabel} \[{termID}\]$ Hazard Analysis Critical Control Points (HACCP) food safety terms; This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221) https://w3id.org/mixs food|term true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001215 Hazard Analysis Critical Control Points (HACCP) guide food safety term
IFSAC_category Plants:Produce:Vegetables:Herbs:Dried Herbs IFSAC term The IFSAC food categorization scheme has five distinct levels to which foods can be assigned, depending upon the type of food. First, foods are assigned to one of four food groups (aquatic animals, land animals, plants, and other). Food groups include increasingly specific food categories; dairy, eggs, meat and poultry, and game are in the land animal food group, and the category meat and poultry is further subdivided into more specific categories of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry). Finally, foods are differentiated by differences in food processing (such as pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized solid and semi-solid dairy products, and unpasteurized solid and semi-solid dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html PMID: 28926300 https://w3id.org/mixs food true true MIXS:0001179 {text} Interagency Food Safety Analytics Collaboration (IFSAC) category
abs_air_humidity 9 gram per gram ^{scientific_float}( *- *{scientific_float})? *{text}$ gram per gram, kilogram per kilogram, kilogram, pound Actual mass of water vapor - mh20 - present in the air water vapor mixture https://w3id.org/mixs absolute|air|humidity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000122 absolute air humidity
adapters AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT adapter A and B sequence Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters https://w3id.org/mixs sequencing MIXS:0000048 {dna};{dna} adapters
add_recov_method Polymer Addition;2018-06-21T14:30Z enumeration;timestamp "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs date|method|recover|secondary|start true MIXS:0001009 [Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer Addition|Surfactant Addition|Not Applicable|other];{timestamp} secondary and tertiary recovery methods and start date
additional_info Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary https://w3id.org/mixs information string MIXS:0000300 additional info
address value The street name and building number where the sampling occurred https://w3id.org/mixs MIXS:0000218 {integer}{text} address
adj_room ^{room_name};{room_number}$ List of rooms (room number, room name) immediately adjacent to the sampling room https://w3id.org/mixs adjacent|room ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ string MIXS:0000219 adjacent rooms
adjacent_environment estuarine biome [ENVO:01000020] ENVO_01001110 or ENVO_00000070 Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes https://w3id.org/mixs adjacent|environment|site true MIXS:0001121 {termLabel}{[termID]} environment adjacent to site
aero_struc plane Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together https://w3id.org/mixs AeroStrucEnum MIXS:0000773 aerospace structure
agrochem_addition roundup;5 milligram per liter;2018-06-21 agrochemical name;agrochemical amount;timestamp gram, mole per liter, milligram per liter Addition of fertilizers, pesticides, etc. - amount and time of applications https://w3id.org/mixs history true MIXS:0000639 {text};{float} {unit};{timestamp} history/agrochemical additions
air_PM_concen PM2.5;10 microgram per cubic meter particulate matter name;measurement value Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM https://w3id.org/mixs air|concentration|particle|particulate true MIXS:0000108 {text};{float} {unit} air particulate matter concentration
air_flow_impede obstructed;hay bales; 2 m enumeration;obstruction type; distance from sampling device Presence of objects in the area that would influence or impede air flow through the air filter https://w3id.org/mixs air true MIXS:0001146 [obstructed|unobstructed]; {text}; {measurement value} local air flow impediments
air_temp ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature of the air at the time of sampling https://w3id.org/mixs air|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000124 air temperature
air_temp_regm 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M temperature value;treatment interval and duration meter Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens https://w3id.org/mixs air|regimen|temperature true MIXS:0000551 {float} {unit};{Rn/start_time/end_time/duration} air temperature regimen
al_sat ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage Aluminum saturation (esp. For tropical soils) https://w3id.org/mixs extreme|properties|saturation|unusual ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000607 extreme_unusual_properties/Al saturation
al_sat_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in determining Al saturation https://w3id.org/mixs extreme|method|properties|saturation|unusual ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000324 extreme_unusual_properties/Al saturation method
alkalinity 50 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milliequivalent per liter, milligram per liter Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate https://w3id.org/mixs alkalinity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000421 alkalinity
alkalinity_method titration Method used for alkalinity measurement https://w3id.org/mixs alkalinity|method string MIXS:0000298 alkalinity method
alkyl_diethers 0.005 mole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Concentration of alkyl diethers https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000490 alkyl diethers
alt 100 meter ^{scientific_float}( *- *{scientific_float})? *{text}$ meter Heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air https://w3id.org/mixs environment ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000094 altitude
aminopept_act 0.269 mole per liter per hour ^{scientific_float}( *- *{scientific_float})? *{text}$ mole per liter per hour Measurement of aminopeptidase activity https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000172 aminopeptidase activity
ammonium 1.5 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of ammonium in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000427 ammonium
amniotic_fluid_color Specification of the color of the amniotic fluid sample https://w3id.org/mixs string MIXS:0000276 amniotic fluid/color
amount_light ^{scientific_float}( *- *{scientific_float})? *{text}$ lux, lumens per square meter The unit of illuminance and luminous emittance, measuring luminous flux per unit area https://w3id.org/mixs light ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000140 amount of light
ances_data A/3*B Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B) https://w3id.org/mixs string MIXS:0000247 ancestral data
anim_water_method water trough [EOL:0001618] ^{termLabel} \[{termID}\]$ Description of the equipment or method used to distribute water to livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653). Multiple terms can be separated by pipes https://w3id.org/mixs animal|delivery|method|water true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001115 animal water delivery method
animal_am tetracycline The name(s) (generic or brand) of the antimicrobial(s) given to the food animal within the last 30 days https://w3id.org/mixs animal|antimicrobial|food string MIXS:0001243 food animal antimicrobial
animal_am_dur 3 days value The duration of time (days) that the antimicrobial was administered to the food animal https://w3id.org/mixs animal|antimicrobial|duration|food|period MIXS:0001244 {float} {day} food animal antimicrobial duration
animal_am_freq 1.5 ^{scientific_float}( *- *{scientific_float})? *{text}$ The frequency per day that the antimicrobial was adminstered to the food animal https://w3id.org/mixs animal|antimicrobial|food|frequency ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float MIXS:0001245 food animal antimicrobial frequency
animal_am_route oral-feed The route by which the antimicrobial is adminstered into the body of the food animal https://w3id.org/mixs administration|animal|antimicrobial|food|route string MIXS:0001246 food animal antimicrobial route of administration
animal_am_use shipping fever The prescribed intended use of or the condition treated by the antimicrobial given to the food animal by any route of administration https://w3id.org/mixs animal|antimicrobial|food|use string MIXS:0001247 food animal antimicrobial intended use
animal_body_cond under conditioned Body condition scoring is a production management tool used to evaluate overall health and nutritional needs of a food animal. Because there are different scoring systems, this field is restricted to three categories https://w3id.org/mixs animal|body|condition|food AnimalBodyCondEnum MIXS:0001248 food animal body condition
animal_diet Hay [FOODON:03301763] text or FOODON_03309997 If the isolate is from a food animal, the type of diet eaten by the food animal. Please list the main food staple and the setting, if appropriate. For a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple terms may apply and can be separated by pipes |Food product for animal covers foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes. If the proper descriptor is not listed please use text to describe the food product type https://w3id.org/mixs animal|diet|food|source true MIXS:0001130 {text} food animal source diet
animal_feed_equip self feeding [EOL:0001645]| straight feed trough [EOL:0001661] EOL:0001757 Description of the feeding equipment used for livestock. This field accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). Multiple terms can be separated by pipes https://w3id.org/mixs animal|equipment true MIXS:0001113 {termLabel} [{termID}] animal feeding equipment
animal_group_size 80 The number of food animals of the same species that are maintained together as a unit, i.e. a herd or flock https://w3id.org/mixs animal|food|size integer MIXS:0001129 food animal group size
animal_housing pen rearing system [EOL:0001636] ^{termLabel} \[{termID}\]$ Description of the housing system of the livestock. This field accepts terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605) https://w3id.org/mixs animal true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001180 animal housing system
animal_intrusion Thripidae [NCBITaxon:45053] ^({termLabel} \[{termID}\])|{integer}$ Identification of animals intruding on the sample or sample site including invertebrates (such as pests or pollinators) and vertebrates (such as wildlife or domesticated animals). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes https://w3id.org/mixs animal|sample|source true ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ string MIXS:0001114 animal intrusion near sample source
animal_sex castrated male The sex and reproductive status of the food animal https://w3id.org/mixs animal|food|source AnimalSexEnum MIXS:0001249 food animal source sex category
annot prokka name of tool or pipeline used, or annotation source description Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter https://w3id.org/mixs sequencing MIXS:0000059 {text} annotation
annual_precpt ^{scientific_float}( *- *{scientific_float})? *{text}$ millimeter The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps https://w3id.org/mixs mean ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000644 mean annual precipitation
annual_temp 12.5 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Mean annual temperature https://w3id.org/mixs mean|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000642 mean annual temperature
antibiotic_regm penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M antibiotic name;antibiotic amount;treatment interval and duration milligram Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens https://w3id.org/mixs regimen true MIXS:0000553 {text};{float} {unit};{Rn/start_time/end_time/duration} antibiotic regimen
api 31.1 API ^{scientific_float}( *- *{scientific_float})? *{text}$ degrees API API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1 API) https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000157 API gravity
arch_struc shed An architectural structure is a human-made, free-standing, immobile outdoor construction https://w3id.org/mixs ArchStrucEnum MIXS:0000774 architectural structure
area_samp_size 12 centimeter x 12 centimeter measurement value centimeter The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected https://w3id.org/mixs area|sample|size MIXS:0001255 {integer} {unit} x {integer} {unit} area sampled size
aromatics_pc ^{name};{float} {unit}$ percent Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) https://w3id.org/mixs ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000133 aromatics wt%
asphaltenes_pc ^{name};{float} {unit}$ percent Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) https://w3id.org/mixs ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000135 asphaltenes wt%
assembly_name HuRef, JCVI_ISG_i3_1.0 name and version of assembly Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community https://w3id.org/mixs sequencing MIXS:0000057 {text} {text} assembly name
assembly_qual High-quality draft genome enumeration The assembly quality category is based on sets of criteria outlined for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated, contiguous sequence per replicon without gaps or ambiguities with a consensus error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs. Medium Quality Draft:Many fragments with little to no review of assembly other than reporting of standard assembly statistics. Low Quality Draft:Many fragments with little to no review of assembly other than reporting of standard assembly statistics. Assembly statistics include, but are not limited to total assembly size, number of contigs, contig N50/L50, and maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence per replicon without gaps or ambiguities, with extensive manual review and editing to annotate putative gene functions and transcriptional units. High-quality draft genome: One or multiple fragments, totaling 90% of the expected genome or replicon sequence or predicted complete. Genome fragment(s): One or multiple fragments, totalling < 90% of the expected genome or replicon sequence, or for which no genome size could be estimated https://w3id.org/mixs sequencing quality MIXS:0000056 [Finished genome|High-quality draft genome|Medium-quality draft genome|Low-quality draft genome|Genome fragment(s)] assembly quality
assembly_software metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise ^{software};{version};{parameters}$ Tool(s) used for assembly, including version number and parameters https://w3id.org/mixs sequencing software ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000058 assembly software
associated_resource http://www.earthmicrobiome.org/ reference to resource A related resource that is referenced, cited, or otherwise associated to the sequence https://w3id.org/mixs sequencing resource true true MIXS:0000091 {PMID}|{DOI}|{URL} relevant electronic resources
association_duration ^{scientific_float}( *- *{scientific_float})? *{text}$ year, day, hour Time spent in host of the symbiotic organism at the time of sampling; relevant scale depends on symbiotic organism and study https://w3id.org/mixs duration|host|host.|period ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001299 duration of association with the host
atmospheric_data wind speed;9 knots atmospheric data name;measurement value Measurement of atmospheric data; can include multiple data https://w3id.org/mixs true MIXS:0001097 {text};{float} {unit} atmospheric data
avg_dew_point 25.5 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day https://w3id.org/mixs average ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000141 average dew point
avg_occup Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room https://w3id.org/mixs average float MIXS:0000775 average daily occupancy
avg_temp 12.5 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day https://w3id.org/mixs average|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000142 average temperature
bac_prod 5 milligram per cubic meter per day ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per cubic meter per day Bacterial production in the water column measured by isotope uptake https://w3id.org/mixs production ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000683 bacterial production
bac_resp 300 micromole oxygen per liter per hour ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per cubic meter per day, micromole oxygen per liter per hour Measurement of bacterial respiration in the water column https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000684 bacterial respiration
bacteria_carb_prod 2.53 microgram per liter per hour ^{scientific_float}( *- *{scientific_float})? *{text}$ Measurement of bacterial carbon production https://w3id.org/mixs carbon|production ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000173 bacterial carbon production
bacterial_density 10 colony forming units per gram dry weight ^{scientific_float}( *- *{scientific_float})? *{text}$ colony forming units per milliliter; colony forming units per gram of dry weight Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043) https://w3id.org/mixs density ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001194 bacteria density
barometric_press 5 millibar ^{scientific_float}( *- *{scientific_float})? *{text}$ millibar Force per unit area exerted against a surface by the weight of air above that surface https://w3id.org/mixs pressure ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000096 barometric pressure
basin Campos Name of the basin (e.g. Campos) https://w3id.org/mixs string true MIXS:0000290 basin name
bathroom_count 1 The number of bathrooms in the building https://w3id.org/mixs count integer MIXS:0000776 bathroom count
bedroom_count 2 The number of bedrooms in the building https://w3id.org/mixs count integer MIXS:0000777 bedroom count
benzene ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of benzene in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000153 benzene
bin_param coverage|kmer The parameters that have been applied during the extraction of genomes from metagenomic datasets https://w3id.org/mixs sequencing parameter BinParamEnum MIXS:0000077 binning parameters
bin_software MetaCluster-TA (RRID:SCR_004599), MaxBin (biotools:maxbin) names and versions of software(s) used Tool(s) used for the extraction of genomes from metagenomic datasets, where possible include a product ID (PID) of the tool(s) used https://w3id.org/mixs sequencing software MIXS:0000078 {software};{version}{PID} binning software
biochem_oxygen_dem ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period https://w3id.org/mixs oxygen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000653 biochemical oxygen demand
biocide ALPHA 1427;Baker Hughes;2008-01-23 name;name;timestamp List of biocides (commercial name of product and supplier) and date of administration https://w3id.org/mixs administration true MIXS:0001011 {text};{text};{timestamp} biocide administration
biocide_admin_method measurement value;frequency;duration;duration milligram per liter Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days) https://w3id.org/mixs administration|method true MIXS:0000456 {float} {unit};{Rn/start_time/end_time/duration};{duration} biocide administration method
biocide_used Quaternary ammonium compound|SterBac commercial name of biocide, active ingredient in biocide or class of biocide Substance intended for preventing, neutralizing, destroying, repelling, or mitigating the effects of any pest or microorganism; that inhibits the growth, reproduction, and activity of organisms, including fungal cells; decreases the number of fungi or pests present; deters microbial growth and degradation of other ingredients in the formulation. Indicate the biocide used on the location where the sample was taken. Multiple terms can be separated by pipes https://w3id.org/mixs true MIXS:0001258 {text} biocide
biol_stat natural enumeration The level of genome modification https://w3id.org/mixs status MIXS:0000858 [wild|natural|semi-natural|inbred line|breeder's line|hybrid|clonal selection|mutant] biological status
biomass total;20 gram biomass type;measurement value ton, kilogram, gram Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements https://w3id.org/mixs biomass true MIXS:0000174 {text};{float} {unit} biomass
biotic_regm sample inoculated with Rhizobium spp. Culture Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi https://w3id.org/mixs regimen true string MIXS:0001038 biotic regimen
biotic_relationship free living Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object https://w3id.org/mixs nucleic acid sequence source observed|relationship BioticRelationshipEnum MIXS:0000028 observed biotic relationship
birth_control medication name Specification of birth control medication used https://w3id.org/mixs MIXS:0000286 {text} birth control
bishomohopanol 14 microgram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, microgram per gram Concentration of bishomohopanol https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000175 bishomohopanol
blood_blood_disord History of blood disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, hematopoietic system disease (https://disease-ontology.org/?id=DOID:74) https://w3id.org/mixs disorder true string MIXS:0000271 blood/blood disorder
blood_press_diast ^{scientific_float}( *- *{scientific_float})? *{text}$ millimeter mercury Resting diastolic blood pressure, measured as mm mercury https://w3id.org/mixs host|host.|pressure ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000258 host blood pressure diastolic
blood_press_syst ^{scientific_float}( *- *{scientific_float})? *{text}$ millimeter mercury Resting systolic blood pressure, measured as mm mercury https://w3id.org/mixs host|host.|pressure ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000259 host blood pressure systolic
bromide 0.05 parts per million ^{scientific_float}( *- *{scientific_float})? *{text}$ parts per million Concentration of bromide https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000176 bromide
build_docs maintenance plans The building design, construction and operation documents https://w3id.org/mixs documents BuildDocsEnum MIXS:0000787 design, construction, and operation documents
build_occup_type market The primary function for which a building or discrete part of a building is intended to be used https://w3id.org/mixs type true BuildOccupTypeEnum true MIXS:0000761 building occupancy type
building_setting rural A location (geography) where a building is set https://w3id.org/mixs BuildingSettingEnum true MIXS:0000768 building setting
built_struc_age 15 years ^{scientific_float}( *- *{scientific_float})? *{text}$ year The age of the built structure since construction https://w3id.org/mixs age ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000145 built structure age
built_struc_set rural The characterization of the location of the built structure as high or low human density https://w3id.org/mixs BuiltStrucSetEnum MIXS:0000778 built structure setting
built_struc_type A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads https://w3id.org/mixs type string MIXS:0000721 built structure type
calcium 0.2 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, micromole per liter, parts per million Concentration of calcium in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000432 calcium
carb_dioxide 410 parts per million ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, parts per million Carbon dioxide (gas) amount or concentration at the time of sampling https://w3id.org/mixs carbon ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000097 carbon dioxide
carb_monoxide 0.1 parts per million ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, parts per million Carbon monoxide (gas) amount or concentration at the time of sampling https://w3id.org/mixs carbon ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000098 carbon monoxide
carb_nitro_ratio 0.417361111 measurement value Ratio of amount or concentrations of carbon to nitrogen https://w3id.org/mixs carbon|nitrogen|ratio float MIXS:0000310 {float}:{float} carbon/nitrogen ratio
ceil_area 25 square meter ^{scientific_float}( *- *{scientific_float})? *{text}$ square meter The area of the ceiling space within the room https://w3id.org/mixs area|ceiling ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000148 ceiling area
ceil_cond damaged The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas https://w3id.org/mixs ceiling|condition DamagedEnum MIXS:0000779 ceiling condition
ceil_finish_mat stucco The type of material used to finish a ceiling https://w3id.org/mixs ceiling|material CeilFinishMatEnum MIXS:0000780 ceiling finish material
ceil_struc concrete The construction format of the ceiling https://w3id.org/mixs ceiling CeilStrucEnum MIXS:0000782 ceiling structure
ceil_texture popcorn The feel, appearance, or consistency of a ceiling surface https://w3id.org/mixs ceiling|texture CeilingWallTextureEnum MIXS:0000783 ceiling texture
ceil_thermal_mass ^{scientific_float}( *- *{scientific_float})? *{text}$ joule per degree Celsius The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow https://w3id.org/mixs ceiling|mass ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000143 ceiling thermal mass
ceil_type coffered The type of ceiling according to the ceiling's appearance or construction https://w3id.org/mixs ceiling|type CeilTypeEnum MIXS:0000784 ceiling type
ceil_water_mold presence of mold visible Signs of the presence of mold or mildew on the ceiling https://w3id.org/mixs ceiling MoldVisibilityEnum MIXS:0000781 ceiling signs of water/mold
chem_administration agar [CHEBI:2509];2018-05-11T20:00Z CHEBI;timestamp List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi https://w3id.org/mixs administration true MIXS:0000751 {termLabel} [{termID}];{timestamp} chemical administration
chem_mutagen nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M mutagen name;mutagen amount;treatment interval and duration milligram per liter Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens https://w3id.org/mixs true MIXS:0000555 {text};{float} {unit};{Rn/start_time/end_time/duration} chemical mutagen
chem_oxygen_dem ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite https://w3id.org/mixs oxygen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000656 chemical oxygen demand
chem_treat_method measurement value;frequency;duration;duration milligram per liter Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days) https://w3id.org/mixs method|treatment MIXS:0000457 {float} {unit};{Rn/start_time/end_time/duration};{duration};{duration} chemical treatment method
chem_treatment ACCENT 1125;DOW;2010-11-17 name;name;timestamp List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included https://w3id.org/mixs treatment MIXS:0001012 {text};{text};{timestamp} chemical treatment
chimera_check uchime;v4.1;default parameters ^{software};{version};{parameters}$ Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences https://w3id.org/mixs sequencing software ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000052 chimera check software
chloride 5000 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of chloride in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000429 chloride
chlorophyll 5 milligram per cubic meter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per cubic meter, microgram per liter Concentration of chlorophyll https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000177 chlorophyll
climate_environment tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates https://w3id.org/mixs environment true string MIXS:0001040 climate environment
coll_site_geo_feat farm [ENVO:00000078] ENVO:00000002 or ENVO:00000070 Text or terms that describe the geographic feature where the food sample was obtained by the researcher. This field accepts selected terms listed under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002), for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011} or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002]; or human construction (http://purl.obolibrary.org/obo/ENVO_00000070) https://w3id.org/mixs feature|geographic|site true MIXS:0001183 {text}|{termLabel} [{termID}] collection site geographic feature
collection_date 2013-03-25T12:42:31+01:00 The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant https://w3id.org/mixs environment date datetime true MIXS:0000011 collection date
compl_appr other text The approach used to determine the completeness of a given genomic assembly, which would typically make use of a set of conserved marker genes or a closely related reference genome. For UViG completeness, include reference genome or group used, and contig feature suggesting a complete genome https://w3id.org/mixs sequencing ComplApprEnum MIXS:0000071 completeness approach
compl_score med;60% quality;percent completeness Completeness score is typically based on either the fraction of markers found as compared to a database or the percent of a genome found as compared to a closely related reference genome. High Quality Draft: >90%, Medium Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated completeness scores https://w3id.org/mixs sequencing score MIXS:0000069 [high|med|low];{percentage} completeness score
compl_software checkm names and versions of software(s) used Tools used for completion estimate, i.e. checkm, anvi'o, busco https://w3id.org/mixs sequencing software MIXS:0000070 {software};{version} completeness software
conduc 10 milliSiemens per centimeter ^{scientific_float}( *- *{scientific_float})? *{text}$ milliSiemens per centimeter Electrical conductivity of water https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000692 conductivity
cons_food_stor_dur P5D ^{duration}$ hours or days The storage duration of the food commodity by the consumer, prior to onset of illness or sample collection. Indicate the timepoint written in ISO 8601 format https://w3id.org/mixs consumer|duration)|food|storage ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0001195 food stored by consumer (storage duration)
cons_food_stor_temp 4 degree Celsius text or measurement value degree Celsius Temperature at which food commodity was stored by the consumer, prior to onset of illness or sample collection https://w3id.org/mixs consumer|food|storage|temperature MIXS:0001196 {float} {unit}|{text} food stored by consumer (storage temperature)
cons_purch_date 2013-03-25T12:42:31+01:00 The date a food product was purchased by consumer https://w3id.org/mixs date datetime MIXS:0001197 purchase date
cons_qty_purchased 5 cans ^{integer} {text}$ The quantity of food purchased by consumer https://w3id.org/mixs quantity ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001198 quantity purchased
contam_score 0.01 The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases https://w3id.org/mixs sequencing score float MIXS:0000072 contamination score
contam_screen_input contigs The type of sequence data used as input https://w3id.org/mixs sequencing ContamScreenInputEnum MIXS:0000005 contamination screening input
contam_screen_param kmer enumeration;value or name Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer https://w3id.org/mixs sequencing parameter MIXS:0000073 [ref db|kmer|coverage|combination];{text|integer} contamination screening parameters
cool_syst_id 12345 The cooling system identifier https://w3id.org/mixs identifier integer MIXS:0000785 cooling system identifier
crop_rotation yes;R2/2017-01-01/2018-12-31/P6M crop rotation status;schedule Whether or not crop is rotated, and if yes, rotation schedule https://w3id.org/mixs history MIXS:0000318 history/crop rotation
crop_yield 570 kilogram per metre square ^{scientific_float}( *- *{scientific_float})? *{text}$ kilogram per metre square Amount of crop produced per unit or area of land https://w3id.org/mixs crop ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001116 crop yield
cult_isol_date 2018-05-11T10:00:00+01:00 The datetime marking the end of a process in which a sample yields a positive result for the target microbial analyte(s) in the form of an isolated colony or colonies https://w3id.org/mixs culture|date|isolation datetime MIXS:0001181 culture isolation date
cult_result positive Any result of a bacterial culture experiment reported as a binary assessment such as positive/negative, active/inactive https://w3id.org/mixs culture CultResultEnum MIXS:0001117 culture result
cult_result_org Listeria monocytogenes [NCIT:C86502] ^({termLabel} \[{termID}\])|{integer}$ Taxonomic information about the cultured organism(s) https://w3id.org/mixs culture|organism true ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ string MIXS:0001118 culture result organism
cult_root_med http://himedialabs.com/TD/PT158.pdf name, PMID,DOI or url Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors https://w3id.org/mixs culture MIXS:0001041 {text}|{PMID}|{DOI}|{URL} culture rooting medium
cult_target Listeria monocytogenes [NCIT:C86502] NCIT:C14250 or NCBI taxid or culture independent The target microbial analyte in terms of investigation scope. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy https://w3id.org/mixs culture|microbial|target true MIXS:0001119 {termLabel} [{termID}]|{integer} culture target microbial analyte
cur_land_use conifers enumeration Present state of sample site https://w3id.org/mixs land|use MIXS:0001080 [cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste areas|small grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen forest receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent water body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery trees)] current land use
cur_vegetation current vegetation type Vegetation classification from one or more standard classification systems, or agricultural crop https://w3id.org/mixs vegetation MIXS:0000312 {text} current vegetation
cur_vegetation_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in vegetation classification https://w3id.org/mixs method|vegetation ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000314 current vegetation method
date_extr_weath 2013-03-25T12:42:31+01:00 Date of unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order https://w3id.org/mixs date|extreme|weather true datetime MIXS:0001142 extreme weather date
date_last_rain 2013-03-25T12:42:31+01:00 The date of the last time it rained https://w3id.org/mixs date|rain datetime MIXS:0000786 date last rain
decontam_software anvi'o enumeration Tool(s) used in contamination screening https://w3id.org/mixs sequencing software MIXS:0000074 [checkm/refinem|anvi'o|prodege|bbtools:decontaminate.sh|acdc|combination] decontamination software
density 1000 kilogram per cubic meter ^{scientific_float}( *- *{scientific_float})? *{text}$ gram per cubic meter, gram per cubic centimeter Density of the sample, which is its mass per unit volume (aka volumetric mass density) https://w3id.org/mixs density ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000435 density
depos_env "Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs environment DeposEnvEnum true MIXS:0000992 depositional environment
depth ^{scientific_float}( *- *{scientific_float})? *{text}$ meter The vertical distance below local surface. For sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples https://w3id.org/mixs environment depth ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000018 depth
dermatology_disord History of dermatology disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, skin disease (https://disease-ontology.org/?id=DOID:37) https://w3id.org/mixs disorder true string MIXS:0000284 dermatology disorder
detec_type independent sequence (UViG) enumeration Type of UViG detection https://w3id.org/mixs sequencing type MIXS:0000084 [independent sequence (UViG)|provirus (UpViG)] detection type
dew_point 22 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000129 dew point
diet_last_six_month yes;vegetarian diet diet change;current diet Specification of major diet changes in the last six months, if yes the change should be specified https://w3id.org/mixs diet|months MIXS:0000266 {boolean};{text} major diet change in last six months
dietary_claim_use No preservatives [FOODON:03510113] FOODON:03510023 These descriptors are used either for foods intended for special dietary use as defined in 21 CFR 105 or for foods that have special characteristics indicated in the name or labeling. This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms can be separated by one or more pipes, but please consider limiting this list to the most prominent dietary claim or use https://w3id.org/mixs diet|use true MIXS:0001199 {text}|{termLabel} [{termID}] dietary claim or use
diether_lipids 0.2 nanogram per liter diether lipid name;measurement value nanogram per liter Concentration of diether lipids; can include multiple types of diether lipids https://w3id.org/mixs true MIXS:0000178 {text};{float} {unit} diether lipids
diss_carb_dioxide 5 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample https://w3id.org/mixs carbon|dissolved ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000436 dissolved carbon dioxide
diss_hydrogen 0.3 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Concentration of dissolved hydrogen https://w3id.org/mixs dissolved ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000179 dissolved hydrogen
diss_inorg_carb 2059 micromole per kilogram ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, milligram per liter, parts per million Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter https://w3id.org/mixs carbon|dissolved|inorganic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000434 dissolved inorganic carbon
diss_inorg_nitro 761 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, micromole per liter Concentration of dissolved inorganic nitrogen https://w3id.org/mixs dissolved|inorganic|nitrogen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000698 dissolved inorganic nitrogen
diss_inorg_phosp 56.5 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Concentration of dissolved inorganic phosphorus in the sample https://w3id.org/mixs dissolved|inorganic|phosphorus ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000106 dissolved inorganic phosphorus
diss_iron ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Concentration of dissolved iron in the sample https://w3id.org/mixs dissolved ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000139 dissolved iron
diss_org_carb 197 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid https://w3id.org/mixs carbon|dissolved|organic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000433 dissolved organic carbon
diss_org_nitro 0.05 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2 https://w3id.org/mixs dissolved|nitrogen|organic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000162 dissolved organic nitrogen
diss_oxygen 175 micromole per kilogram ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per kilogram, milligram per liter Concentration of dissolved oxygen https://w3id.org/mixs dissolved|oxygen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000119 dissolved oxygen
diss_oxygen_fluid ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per kilogram, milligram per liter Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic) https://w3id.org/mixs dissolved|oxygen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000438 dissolved oxygen in fluids
dominant_hand right Dominant hand of the subject https://w3id.org/mixs DominantHandEnum MIXS:0000944 dominant hand
door_comp_type revolving The composite type of the door https://w3id.org/mixs door|type DoorCompTypeEnum MIXS:0000795 door type, composite
door_cond new The phsical condition of the door https://w3id.org/mixs condition|door DamagedRupturedEnum MIXS:0000788 door condition
door_direct inward The direction the door opens https://w3id.org/mixs direction|door DoorDirectEnum MIXS:0000789 door direction of opening
door_loc north The relative location of the door in the room https://w3id.org/mixs door|location CompassDirections8Enum MIXS:0000790 door location
door_mat wood The material the door is composed of https://w3id.org/mixs door|material DoorMatEnum MIXS:0000791 door material
door_move swinging The type of movement of the door https://w3id.org/mixs door DoorMoveEnum MIXS:0000792 door movement
door_size 2.5 square meter ^{scientific_float}( *- *{scientific_float})? *{text}$ square meter The size of the door https://w3id.org/mixs area|door|size ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000158 door area or size
door_type wooden The type of door material https://w3id.org/mixs door|type DoorTypeEnum MIXS:0000794 door type
door_type_metal hollow The type of metal door https://w3id.org/mixs door|type DoorTypeMetalEnum MIXS:0000796 door type, metal
door_type_wood battened enumeration The type of wood door https://w3id.org/mixs door|type MIXS:0000797 [bettened and ledged|battened|ledged and braced|battened|ledged and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire gauged] door type, wood
door_water_mold presence of mold visible Signs of the presence of mold or mildew on a door https://w3id.org/mixs door MoldVisibilityEnum MIXS:0000793 door signs of water/mold
douche 2013-03-25T12:42:31+01:00 Date of most recent douche https://w3id.org/mixs datetime MIXS:0000967 douche
down_par 28.71 microEinstein per square meter per second ^{scientific_float}( *- *{scientific_float})? *{text}$ microEinstein per square meter per second, microEinstein per square centimeter per second Visible waveband radiance and irradiance measurements in the water column https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000703 downward PAR
drainage_class well Drainage classification from a standard system such as the USDA system https://w3id.org/mixs classification DrainageClassEnum MIXS:0001085 drainage classification
drawings sketch The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents https://w3id.org/mixs drawings DrawingsEnum MIXS:0000798 drawings
drug_usage Lipitor;2/day drug name;frequency Any drug used by subject and the frequency of usage; can include multiple drugs used https://w3id.org/mixs drug|use true MIXS:0000894 {text};{integer}/[year|month|week|day|hour] drug usage
efficiency_percent ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Percentage of volatile solids removed from the anaerobic digestor https://w3id.org/mixs percent ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000657 efficiency percent
elev 100 meter ^{scientific_float}( *- *{scientific_float})? *{text}$ meter Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit https://w3id.org/mixs environment elevation ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000093 elevation
elevator 2 The number of elevators within the built structure https://w3id.org/mixs count integer MIXS:0000799 elevator count
emulsions emulsion name;measurement value gram per liter Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types https://w3id.org/mixs true MIXS:0000660 {text};{float} {unit} emulsions
encoded_traits beta-lactamase class A for plasmid: antibiotic resistance; for phage: converting genes Should include key traits like antibiotic resistance or xenobiotic degradation phenotypes for plasmids, converting genes for phage https://w3id.org/mixs nucleic acid sequence source MIXS:0000034 {text} encoded traits
enrichment_protocol BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria ^{PMID}|{DOI}|{URL}|{text}$ The microbiological workflow or protocol followed to test for the presence or enumeration of the target microbial analyte(s). Please provide a PubMed or DOI reference for published protocols https://w3id.org/mixs enrichment|protocol ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001177 enrichment protocol
env_broad_scale rangeland biome [ENVO:01000247] ^{termLabel} \[{termID}\]$ Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS https://w3id.org/mixs environment context|environmental ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string true MIXS:0000012 broad-scale environmental context
env_local_scale hillside [ENVO:01000333] Environmental entities having causal influences upon the entity at time of sampling Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS https://w3id.org/mixs environment context|environmental true MIXS:0000013 {termLabel} [{termID}] local environmental context
env_medium bluegrass field soil [ENVO:00005789] ^{termLabel} \[{termID}\]$ Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top) https://w3id.org/mixs environment environmental ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string true MIXS:0000014 environmental medium
env_monitoring_zone Zone 1 ENVO An environmental monitoring zone is a formal designation as part of an environmental monitoring program, in which areas of a food production facility are categorized, commonly as zones 1-4, based on likelihood or risk of foodborne pathogen contamination. This field accepts terms listed under food production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO). Please add a term to indicate the environmental monitoring zone the sample was taken from https://w3id.org/mixs environmental|food|production MIXS:0001254 {text} food production environmental monitoring zone
escalator 4 The number of escalators within the built structure https://w3id.org/mixs count integer MIXS:0000800 escalator count
estimated_size 300000 bp number of base pairs The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period https://w3id.org/mixs nucleic acid sequence source size MIXS:0000024 {integer} bp estimated size
ethnicity native american text recommend from Wikipedia list A category of people who identify with each other, usually on the basis of presumed similarities such as a common language, ancestry, history, society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups https://w3id.org/mixs true MIXS:0000895 {text} ethnicity
ethylbenzene ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of ethylbenzene in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000155 ethylbenzene
exp_duct ^{scientific_float}( *- *{scientific_float})? *{text}$ square meter The amount of exposed ductwork in the room https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000144 exposed ductwork
exp_pipe ^{integer} {text}$ The number of exposed pipes in the room https://w3id.org/mixs pipes ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000220 exposed pipes
experimental_factor time series design [EFO:0001779] text or EFO and/or OBI Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI) https://w3id.org/mixs investigation experimental|factor true ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$ string MIXS:0000008 {termLabel} [{termID}]|{text} experimental factor
ext_door The number of exterior doors in the built structure https://w3id.org/mixs count|door|exterior integer MIXS:0000170 exterior door count
ext_wall_orient northwest The orientation of the exterior wall https://w3id.org/mixs exterior|wall CompassDirections8Enum MIXS:0000817 orientations of exterior wall
ext_window_orient southwest The compass direction the exterior window of the room is facing https://w3id.org/mixs exterior|window CompassDirections8Enum MIXS:0000818 orientations of exterior window
extr_weather_event hail Unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order https://w3id.org/mixs event|extreme|weather true ExtrWeatherEventEnum MIXS:0001141 extreme weather event
extrachrom_elements 5 Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids (borrelia has 15+ plasmids) https://w3id.org/mixs nucleic acid sequence source integer MIXS:0000023 extrachromosomal elements
extreme_event Unusual physical events that may have affected microbial populations https://w3id.org/mixs event|history datetime MIXS:0000320 history/extreme events
facility_type manufacturing-processing Establishment details about the type of facility where the sample was taken. This is independent of the specific product(s) within the facility https://w3id.org/mixs facility|type true FacilityTypeEnum MIXS:0001252 facility type
fao_class Luvisols Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups https://w3id.org/mixs classification FaoClassEnum MIXS:0001083 soil_taxonomic/FAO classification
farm_equip combine harvester [AGRO:00000473] ^{termLabel} \[{termID}\]$ List of equipment used for planting, fertilization, harvesting, irrigation, land levelling, residue management, weeding or transplanting during the growing season. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated by pipes https://w3id.org/mixs equipment|farm|use true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001126 farm equipment used
farm_equip_san hot water pressure wash, hypochlorite solution, 50 parts per million text or commercial name of sanitizer or class of sanitizer or active ingredient in sanitizer parts per million Method used to sanitize growing and harvesting equipment. This can including type and concentration of sanitizing solution. Multiple terms can be separated by one or more pipes https://w3id.org/mixs equipment|farm true MIXS:0001124 {text} {float} {unit} farm equipment sanitization
farm_equip_san_freq Biweekly The number of times farm equipment is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually https://w3id.org/mixs equipment|farm|frequency string MIXS:0001125 farm equipment sanitization frequency
farm_equip_shared combine harvester [AGRO:00000473] ^{termLabel} \[{termID}\]$ List of planting, growing or harvesting equipment shared with other farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated by pipes https://w3id.org/mixs equipment|farm true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001123 equipment shared with other farms
farm_water_source well Source of water used on the farm for irrigation of crops or watering of livestock https://w3id.org/mixs farm|source|water FarmWaterSourceEnum true MIXS:0001110 farm watering water source
feat_pred Prodigal;2.6.3;default parameters ^{software};{version};{parameters}$ Method used to predict UViGs features such as ORFs, integration site, etc https://w3id.org/mixs sequencing feature|predict ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000061 feature prediction
ferm_chem_add salt chemical ingredient Any chemicals that are added to the fermentation process to achieve the desired final product https://w3id.org/mixs fermentation true true MIXS:0001185 {float} {unit} fermentation chemical additives
ferm_chem_add_perc 0.01 percentage The amount of chemical added to the fermentation process https://w3id.org/mixs fermentation|percent true float true MIXS:0001186 fermentation chemical additives percentage
ferm_headspace_oxy 0.05 percentage The amount of headspace oxygen in a fermentation vessel https://w3id.org/mixs fermentation|oxygen float true MIXS:0001187 fermentation headspace oxygen
ferm_medium molasses The growth medium used for the fermented food fermentation process, which supplies the required nutrients. Usually this includes a carbon and nitrogen source, water, micronutrients and chemical additives https://w3id.org/mixs fermentation string true MIXS:0001188 fermentation medium
ferm_pH 4.5 The pH of the fermented food fermentation process https://w3id.org/mixs fermentation|ph float true MIXS:0001189 fermentation pH
ferm_rel_humidity 95% ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage percent or float? The relative humidity of the fermented food fermentation process https://w3id.org/mixs fermentation|humidity|relative ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0001190 fermentation relative humidity
ferm_temp 22 degrees Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius The temperature of the fermented food fermentation process https://w3id.org/mixs fermentation|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0001191 fermentation temperature
ferm_time P10D ^{duration}$ days The time duration of the fermented food fermentation process https://w3id.org/mixs fermentation|time ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string true MIXS:0001192 fermentation time
ferm_vessel steel drum The type of vessel used for containment of the fermentation https://w3id.org/mixs fermentation string true MIXS:0001193 fermentation vessel
fertilizer_admin fish emulsion [AGRO:00000082] ^{termLabel} \[{termID}\]$ Type of fertilizer or amendment added to the soil or water for the purpose of improving substrate health and quality for plant growth. This field accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). Multiple terms may apply and can be separated by pipes, listing in reverse chronological order https://w3id.org/mixs administration ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001127 fertilizer administration
fertilizer_date 2018-05-11T10:00:00+01:00 Date of administration of soil amendment or fertilizer. Multiple terms may apply and can be separated by pipes, listing in reverse chronological order https://w3id.org/mixs administration|date datetime MIXS:0001128 fertilizer administration date
fertilizer_regm urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M fertilizer name;fertilizer amount;treatment interval and duration gram, mole per liter, milligram per liter Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens https://w3id.org/mixs regimen true MIXS:0000556 {text};{float} {unit};{Rn/start_time/end_time/duration} fertilizer regimen
field Name of the hydrocarbon field (e.g. Albacora) https://w3id.org/mixs string true MIXS:0000291 field name
filter_type HEPA A device which removes solid particulates or airborne molecular contaminants https://w3id.org/mixs filter|type true FilterTypeEnum true MIXS:0000765 filter type
fire Historical and/or physical evidence of fire https://w3id.org/mixs history datetime MIXS:0001086 history/fire
fireplace_type wood burning A firebox with chimney https://w3id.org/mixs type FireplaceTypeEnum MIXS:0000802 fireplace type
flooding Historical and/or physical evidence of flooding https://w3id.org/mixs history datetime MIXS:0000319 history/flooding
floor_age ^{scientific_float}( *- *{scientific_float})? *{text}$ years, weeks, days The time period since installment of the carpet or flooring https://w3id.org/mixs age|floor ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000164 floor age
floor_area ^{scientific_float}( *- *{scientific_float})? *{text}$ square meter The area of the floor space within the room https://w3id.org/mixs area|floor ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000165 floor area
floor_cond new The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas https://w3id.org/mixs condition|floor DamagedEnum MIXS:0000803 floor condition
floor_count The number of floors in the building, including basements and mechanical penthouse https://w3id.org/mixs count|floor integer MIXS:0000225 floor count
floor_finish_mat carpet enumeration The floor covering type; the finished surface that is walked on https://w3id.org/mixs floor|material MIXS:0000804 [tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify unfinished|sealed|clear finish|paint] floor finish material
floor_struc concrete Refers to the structural elements and subfloor upon which the finish flooring is installed https://w3id.org/mixs floor FloorStrucEnum MIXS:0000806 floor structure
floor_thermal_mass ^{scientific_float}( *- *{scientific_float})? *{text}$ joule per degree Celsius The ability of the floor to provide inertia against temperature fluctuations https://w3id.org/mixs floor|mass ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000166 floor thermal mass
floor_water_mold ceiling discoloration Signs of the presence of mold or mildew in a room https://w3id.org/mixs floor FloorWaterMoldEnum MIXS:0000805 floor signs of water/mold
fluor 2.5 volts ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram chlorophyll a per cubic meter, volts Raw or converted fluorescence of water https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000704 fluorescence
foetal_health_stat Specification of foetal health status, should also include abortion https://w3id.org/mixs status string MIXS:0000275 amniotic fluid/foetal health status
food_additive xanthan gum [FOODON:03413321] FOODON:03412972 A substance or substances added to food to maintain or improve safety and freshness, to improve or maintain nutritional value, or improve taste, texture and appearance. This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972). Multiple terms can be separated by one or more pipes, but please consider limiting this list to the top 5 ingredients listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors https://w3id.org/mixs food true MIXS:0001200 {text}|{termLabel} [{termID}] food additive
food_allergen_label food allergen labelling about crustaceans and products thereof [FOODON:03510215] FOODON:03510213 A label indication that the product contains a recognized allergen. This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213) https://w3id.org/mixs food true MIXS:0001201 {text}|{termLabel} [{termID}] food allergen labeling
food_clean_proc rinsed with water|scrubbed with brush The process of cleaning food to separate other environmental materials from the food source. Multiple terms can be separated by pipes https://w3id.org/mixs food|process FoodCleanProcEnum MIXS:0001182 food cleaning process
food_contact_surf cellulose acetate [FOODON:03500034] FOODON:03500010 The specific container or coating materials in direct contact with the food. Multiple values can be assigned. This field accepts terms listed under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010) https://w3id.org/mixs food|surface true MIXS:0001131 {text}|{termLabel} [{termID}] food contact surface
food_contain_wrap Plastic shrink-pack [FOODON:03490137] FOODON:03490100 Type of container or wrapping defined by the main container material, the container form, and the material of the liner lids or ends. Also type of container or wrapping by form; prefer description by material first, then by form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100) https://w3id.org/mixs food MIXS:0001132 {text}|{termLabel} [{termID}] food container or wrapping
food_cooking_proc food blanching [FOODON:03470175] FOODON:03450002 The transformation of raw food by the application of heat. This field accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002) https://w3id.org/mixs food|process true MIXS:0001202 {text}|{termLabel} [{termID}] food cooking process
food_dis_point USA: Delmarva, Peninsula ^{text}: {text}, {text}$ A reference to a place on the Earth, by its name or by its geographical location that refers to a distribution point along the food chain. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012 https://w3id.org/mixs food|geographic|location true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001203 food distribution point geographic location
food_dis_point_city Atlanta[GAZ:00004445] GAZ:00000448 A reference to a place on the Earth, by its name or by its geographical location that refers to a distribution point along the food chain. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012 https://w3id.org/mixs food|geographic|location true MIXS:0001204 {text}|{termLabel} [{termID}] food distribution point geographic location (city)
food_harvest_proc hand-picked A harvesting process is a process which takes in some food material from an individual or community of plant or animal organisms in a given context and time, and outputs a precursor or consumable food product. This may include a part of an organism or the whole, and may involve killing the organism https://w3id.org/mixs food|process true string MIXS:0001133 Food harvesting process
food_ingredient bean (whole) [FOODON:00002753] FOODON In this field, please list individual ingredients for multi-component food [FOODON:00002501] and simple foods that is not captured in food_type. Please use terms that are present in FoodOn. Multiple terms can be separated by one or more pipes |, but please consider limiting this list to the top 5 ingredients listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors https://w3id.org/mixs food|ingredient true MIXS:0001205 {text}|{termLabel} [{termID}] food ingredient
food_name_status protected geographic indication [FOODON:03530256] ^{termLabel} \[{termID}\]$ A datum indicating that use of a food product name is regulated in some legal jurisdiction. This field accepts terms listed under food product name legal status (http://purl.obolibrary.org/obo/FOODON_03530087) https://w3id.org/mixs food|product|status ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001206 food product name legal status
food_origin USA: Delmarva, Peninsula ^{text}: {text}, {text}$ A reference to a place on the Earth, by its name or by its geographical location that describes the origin of the food commodity, either in terms of its cultivation or production. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448) https://w3id.org/mixs food|geographic|location|product ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001207 food product origin geographic location
food_pack_capacity 454 grams ^{scientific_float}( *- *{scientific_float})? *{text}$ grams The maximum number of product units within a package https://w3id.org/mixs food|package ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001208 food package capacity
food_pack_integrity food packing medium compromised [FOODON:00002517] FOODON:03530218 A term label and term id to describe the state of the packing material and text to explain the exact condition. This field accepts terms listed under food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218) https://w3id.org/mixs food true MIXS:0001209 {text}|{termLabel} [{termID}] food packing medium integrity
food_pack_medium FOODON:03480020 The medium in which the food is packed for preservation and handling or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. The packing medium may provide a controlled environment for the food. It may also serve to improve palatability and consumer appeal. This includes edible packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), vacuum packed, or packed with aerosol propellant. This field accepts terms under food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple terms may apply and can be separated by pipes https://w3id.org/mixs food true MIXS:0001134 {text}|{termLabel} [{termID}] food packing medium
food_preserv_proc food slow freezing [FOODON:03470128] FOODON:03470107 The methods contributing to the prevention or retardation of microbial, enzymatic or oxidative spoilage and thus to the extension of shelf life. This field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107) https://w3id.org/mixs food|process true MIXS:0001135 {text}|{termLabel} [{termID}] food preservation process
food_prior_contact processed in stainless steel container [FOODON:03530081] FOODON:03530077 The material the food contacted (e.g., was processed in) prior to packaging. This field accepts terms listed under material of contact prior to food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper descriptor is not listed please use text to describe the material of contact prior to food packaging https://w3id.org/mixs food|material|prior true MIXS:0001210 {text}|{termLabel} [{termID}] material of contact prior to food packaging
food_prod organic plant cultivation [FOODON:03530253] ^{termLabel} \[{termID}\]$ Descriptors of the food production system or of the agricultural environment and growing conditions related to the farm production system, such as wild caught, organic, free-range, industrial, dairy, beef, domestic or cultivated food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206). Multiple terms may apply and can be separated by pipes https://w3id.org/mixs food|production true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001211 food production system characteristics
food_prod_char wild caught Descriptors of the food production system such as wild caught, free-range, organic, free-range, industrial, dairy, beef https://w3id.org/mixs food|production true string MIXS:0001136 food production characteristics
food_prod_synonym pinot gris Other names by which the food product is known by (e.g., regional or non-English names) https://w3id.org/mixs food|product true string MIXS:0001212 food product synonym
food_product_qual raw [FOODON:03311126] ^{termLabel} \[{termID}\]$ "Descriptors for describing food visually or via other senses, which is useful for tasks like food inspection where little prior knowledge of how the food came to be is available. Some terms like ""food (frozen)"" are both a quality descriptor and the output of a process. This field accepts terms listed under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454)" https://w3id.org/mixs food|product|quality ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001213 food product by quality
food_product_type FOODON:00001002 or FOODON:03309997 A food product type is a class of food products that is differentiated by its food composition (e.g., single- or multi-ingredient), processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories. This field accepts terms under food product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes https://w3id.org/mixs food|product|type MIXS:0001184 {text}|{termLabel} [{termID}] food product type
food_quality_date best by 2020-05-24 enumeration, date "The date recommended for the use of the product while at peak quality, this date is not a reflection of safety unless used on infant formula this date is not a reflection of safety and is typically labeled on a food product as ""best if used by,"" best by,"" ""use by,"" or ""freeze by.""" https://w3id.org/mixs date|food|quality MIXS:0001178 [best by|best if used by|freeze by|use by]; date food quality date
food_source FOODON term Type of plant or animal from which the food product or its major ingredient is derived or a chemical food source [FDA CFSAN 1995] https://w3id.org/mixs food|source MIXS:0001139 {termLabel} [{termID}] food source
food_source_age 6 months ^{scientific_float}( *- *{scientific_float})? *{text}$ days ISO 8601 period or measurement value? The age of the food source host organim. Depending on the type of host organism, age may be more appropriate to report in days, weeks, or years https://w3id.org/mixs age|food|source ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001251 food source age
food_trace_list tropical tree fruits The FDA is proposing to establish additional traceability recordkeeping requirements (beyond what is already required in existing regulations) for persons who manufacture, process, pack, or hold foods the Agency has designated for inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies the foods for which the additional traceability records described in the proposed rule would be required. The term Food Traceability List (FTL) refers not only to the foods specifically listed (https://www.fda.gov/media/142303/download), but also to any foods that contain listed foods as ingredients https://w3id.org/mixs food FoodTraceListEnum MIXS:0001214 food traceability list category
food_trav_mode train travel [GENEPIO:0001060] ^{termLabel} \[{termID}\]$ A descriptor for the method of movement of food commodity along the food distribution system. This field accepts terms listed under travel mode (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes https://w3id.org/mixs food|method|transport true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001137 food shipping transportation method
food_trav_vehic aircraft [ENVO:01001488]|car [ENVO:01000605] ENVO:01000604 A descriptor for the mobile machine which is used to transport food commodities along the food distribution system. This field accepts terms listed under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes https://w3id.org/mixs food|transport true MIXS:0001138 {text}|{termLabel} [{termID}] food shipping transportation vehicle
food_treat_proc gluten removal process [FOODON:03460750] FOODON:03460111 Used to specifically characterize a food product based on the treatment or processes applied to the product or any indexed ingredient. The processes include adding, substituting or removing components or modifying the food or component, e.g., through fermentation. Multiple values can be assigned. This fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111) https://w3id.org/mixs food|process|treatment true MIXS:0001140 {text}|{termLabel} [{termID}] food treatment process
freq_clean Daily The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually https://w3id.org/mixs frequency FreqCleanEnum MIXS:0000226 frequency of cleaning
freq_cook ^{integer} {text}$ The number of times a meal is cooked per week https://w3id.org/mixs frequency ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000227 frequency of cooking
fungicide_regm bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M gram, mole per liter, milligram per liter Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens https://w3id.org/mixs regimen true string MIXS:0000557 fungicide regimen
furniture chair The types of furniture present in the sampled room https://w3id.org/mixs FurnitureEnum MIXS:0000807 furniture
gaseous_environment nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M micromole per liter Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens https://w3id.org/mixs environment true string MIXS:0000558 gaseous environment
gaseous_substances gaseous substance name;measurement value micromole per liter Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances https://w3id.org/mixs true MIXS:0000661 {text};{float} {unit} gaseous substances
gastrointest_disord History of gastrointestinal tract disorders; can include multiple disorders. History of blood disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77) https://w3id.org/mixs disorder true string MIXS:0000280 gastrointestinal tract disorder
gender_restroom male The gender type of the restroom https://w3id.org/mixs GenderRestroomEnum MIXS:0000808 gender of restroom
genetic_mod aox1A transgenic PMID, DOI, URL or text Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection https://w3id.org/mixs MIXS:0000859 {PMID}|{DOI}|{URL} genetic modification
geo_loc_name USA: Maryland, Bethesda ^{text}: {text}, {text}$ The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ) https://w3id.org/mixs environment geographic|location ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000010 geographic location (country and/or sea,region)
gestation_state Specification of the gestation state https://w3id.org/mixs string MIXS:0000272 amniotic fluid/gestation state
glucosidase_act 5 mol per liter per hour ^{scientific_float}( *- *{scientific_float})? *{text}$ mol per liter per hour Measurement of glucosidase activity https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000137 glucosidase activity
gravidity yes;due date:2018-05-11 Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used https://w3id.org/mixs MIXS:0000875 {boolean};{timestamp} gravidity
gravity 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M gravity factor value;treatment interval and duration meter per square second, g Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments https://w3id.org/mixs true MIXS:0000559 {float} {unit};{Rn/start_time/end_time/duration} gravity
growth_facil Growth chamber [CO_715:0000189] free text or CO Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research https://w3id.org/mixs facility|growth MIXS:0001043 {text}|{termLabel} [{termID}] growth facility
growth_habit spreading Characteristic shape, appearance or growth form of a plant species https://w3id.org/mixs growth GrowthHabitEnum MIXS:0001044 growth habit
growth_hormone_regm abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M growth hormone name;growth hormone amount;treatment interval and duration gram, mole per liter, milligram per liter Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens https://w3id.org/mixs growth|regimen true MIXS:0000560 {text};{float} {unit};{Rn/start_time/end_time/duration} growth hormone regimen
growth_medium LB broth A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). The name of the medium used to grow the microorganism https://w3id.org/mixs growth string MIXS:0001108 growth medium
gynecologic_disord History of gynecological disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, female reproductive system disease (https://disease-ontology.org/?id=DOID:229) https://w3id.org/mixs disorder true string MIXS:0000288 gynecological disorder
hall_count The total count of hallways and cooridors in the built structure https://w3id.org/mixs corridor|count|hallway integer MIXS:0000228 hallway/corridor count
handidness right handedness The handidness of the individual sampled https://w3id.org/mixs HandidnessEnum MIXS:0000809 handidness
hc_produced Gas "Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs hydrocarbon|type HcProducedEnum true MIXS:0000989 hydrocarbon type produced
hcr Oil Sand "Main Hydrocarbon Resource type. The term ""Hydrocarbon Resource"" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs hydrocarbon|resource|type HcrEnum true MIXS:0000988 hydrocarbon resource type
hcr_fw_salinity ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS https://w3id.org/mixs salinity|water ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000406 formation water salinity
hcr_geol_age Silurian "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs age|hydrocarbon|resource GeolAgeEnum true MIXS:0000993 hydrocarbon resource geological age
hcr_pressure ^{float} *- *{float} {unit}$ atmosphere, kilopascal Original pressure of the hydrocarbon resource https://w3id.org/mixs hydrocarbon|pressure|resource ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000395 hydrocarbon resource original pressure
hcr_temp 150-295 degree Celsius ^{float} *- *{float} {unit}$ degree Celsius Original temperature of the hydrocarbon resource https://w3id.org/mixs hydrocarbon|resource|temperature ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000393 hydrocarbon resource original temperature
heat_cool_type heat pump Methods of conditioning or heating a room or building https://w3id.org/mixs type true HeatCoolTypeEnum true MIXS:0000766 heating and cooling system type
heat_deliv_loc north The location of heat delivery within the room https://w3id.org/mixs delivery|location|locations CompassDirections8Enum MIXS:0000810 heating delivery locations
heat_sys_deliv_meth radiant The method by which the heat is delivered through the system https://w3id.org/mixs delivery|method HeatSysDelivMethEnum MIXS:0000812 heating system delivery method
heat_system_id The heating system identifier https://w3id.org/mixs identifier integer MIXS:0000833 heating system identifier
heavy_metals mercury;0.09 micrograms per gram heavy metal name;measurement value unit microgram per gram Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field https://w3id.org/mixs extreme|properties|unusual true MIXS:0000652 {text};{float} {unit} extreme_unusual_properties/heavy metals
heavy_metals_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in determining heavy metals https://w3id.org/mixs extreme|method|properties|unusual ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000343 extreme_unusual_properties/heavy metals method
height_carper_fiber ^{scientific_float}( *- *{scientific_float})? *{text}$ centimeter The average carpet fiber height in the indoor environment https://w3id.org/mixs height ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000167 height carpet fiber mat
herbicide_regm atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M gram, mole per liter, milligram per liter Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens https://w3id.org/mixs regimen true string MIXS:0000561 herbicide regimen
horizon_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in determining the horizon https://w3id.org/mixs horizon|method ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000321 horizon method
host_age ^{scientific_float}( *- *{scientific_float})? *{text}$ year, day, hour Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees https://w3id.org/mixs age|host|host. ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000255 host age
host_body_habitat Original body habitat where the sample was obtained from https://w3id.org/mixs body|habitat|host|host. string MIXS:0000866 host body habitat
host_body_mass_index 22 kilogram per square meter ^{scientific_float}( *- *{scientific_float})? *{text}$ kilogram per square meter Body mass index, calculated as weight/(height)squared https://w3id.org/mixs host|host. ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000317 host body-mass index
host_body_product mucus [FMA:66938] FMA or UBERON Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. Use terms from the foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) https://w3id.org/mixs body|host|host.|product MIXS:0000888 {termLabel} [{termID}] host body product
host_body_site FMA or UBERON Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) https://w3id.org/mixs body|host|site MIXS:0000867 {termLabel} [{termID}] host body site
host_body_temp ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Core body temperature of the host when sample was collected https://w3id.org/mixs body|host|host.|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000274 host body temperature
host_cellular_loc extracellular The localization of the symbiotic host organism within the host from which it was sampled: e.g. intracellular if the symbiotic host organism is localized within the cells or extracellular if the symbiotic host organism is localized outside of cells https://w3id.org/mixs host|host.|location HostCellularLocEnum true MIXS:0001313 host cellular location
host_color The color of host https://w3id.org/mixs host|host. string MIXS:0000260 host color
host_common_name Common name of the host https://w3id.org/mixs host|host. string MIXS:0000248 host common name
host_dependence obligate Type of host dependence for the symbiotic host organism to its host https://w3id.org/mixs host|host. HostDependenceEnum true MIXS:0001315 host dependence
host_diet Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types https://w3id.org/mixs diet|host|host. true string MIXS:0000869 host diet
host_disease_stat disease name or Disease Ontology term List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text https://w3id.org/mixs nucleic acid sequence source disease|host|host.|status MIXS:0000031 {termLabel} [{termID}]|{text} host disease status
host_dry_mass 500 gram ^{scientific_float}( *- *{scientific_float})? *{text}$ kilogram, gram Measurement of dry mass https://w3id.org/mixs dry|host|host.|mass ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000257 host dry mass
host_fam_rel relationship type;arbitrary identifier Relationships to other hosts in the same study; can include multiple relationships https://w3id.org/mixs family|host|host.|relationship true MIXS:0000872 {text};{text} host family relationship
host_genotype Observed genotype https://w3id.org/mixs host|host. string MIXS:0000365 host genotype
host_growth_cond https://academic.oup.com/icesjms/article/68/2/349/617247 ^{PMID}|{DOI}|{URL}|{text}$ Literature reference giving growth conditions of the host https://w3id.org/mixs condition|growth|host|host. ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000871 host growth conditions
host_height ^{scientific_float}( *- *{scientific_float})? *{text}$ centimeter, millimeter, meter The height of subject https://w3id.org/mixs height|host|host. ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000264 host height
host_hiv_stat yes;yes HIV status;HAART initiation status HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO] https://w3id.org/mixs host|host.|status MIXS:0000265 {boolean};{boolean} host HIV status
host_infra_spec_name Taxonomic information about the host below subspecies level https://w3id.org/mixs host|host. string MIXS:0000253 host infra-specific name
host_infra_spec_rank Taxonomic rank information about the host below subspecies level, such as variety, form, rank etc https://w3id.org/mixs host|host.|rank string MIXS:0000254 host infra-specific rank
host_last_meal content;duration Content of last meal and time since feeding; can include multiple values https://w3id.org/mixs host|host. true MIXS:0000870 {text};{duration} host last meal
host_length 1 meter ^{scientific_float}( *- *{scientific_float})? *{text}$ centimeter, millimeter, meter The length of subject https://w3id.org/mixs host|host.|length ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000256 host length
host_life_stage stage Description of life stage of host https://w3id.org/mixs host|host.|life MIXS:0000251 {text} host life stage
host_number 3 count Number of symbiotic host individuals pooled at the time of collection https://w3id.org/mixs host|host.|number MIXS:0001305 {float} m host number individual
host_occupation veterinary Couldn't convert host_occupation with value veterinary to integer|almost all host_occupation values in the NCBI biosample_set are strings, not integers Most frequent job performed by subject https://w3id.org/mixs host|host. string MIXS:0000896 host occupation
host_of_host_coinf Maritrema novaezealandense species name of coinfecting organism(s) The taxonomic name of any coinfecting organism observed in a symbiotic relationship with the host of the sampled host organism. e.g. where a sample collected from a host trematode species (A) which was collected from a host_of_host fish (B) that was also infected with a nematode (C), the value here would be (C) the nematode {species name} or {common name}. Multiple co-infecting species may be added in a comma-separated list. For listing symbiotic organisms associated with the host (A) use the term Observed host symbiont https://w3id.org/mixs host|host.|observed|organism MIXS:0001310 {text} observed coinfecting organisms in host of host
host_of_host_disease rabies [DOID:11260] disease name or Disease Ontology term List of diseases with which the host of the symbiotic host organism has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text https://w3id.org/mixs disease|host|host.|status|symbiosis true MIXS:0001319 {termLabel} [{termID}]|{text} host of the symbiotic host disease status
host_of_host_env_loc small intestine[uberon:0002108] UBERON term(s), multiple values can be separated by pipes For a symbiotic host organism the local anatomical environment within its host may have causal influences. Report the anatomical entity(s) which are in the direct environment of the symbiotic host organism being sampled and which you believe have significant causal influences on your sample or specimen. For example, if the symbiotic host organism being sampled is an intestinal worm, its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/) https://w3id.org/mixs context|environmental|host|host.|symbiosis true MIXS:0001325 small intestine [UBERON:0002108] host of the symbiotic host local environmental context
host_of_host_env_med feces[uberon:0001988] An ontology term for a material such as a tissue type or excreted substance Report the environmental material(s) immediately surrounding the symbiotic host organism at the time of sampling. This usually will be a tissue or substance type from the host, but may be another material if the symbiont is external to the host. We recommend using classes from the UBERON ontology, but subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483) may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. intestines, heart) https://w3id.org/mixs environmental|host|host.|symbiosis MIXS:0001326 {termLabel} [{termID}] host of the symbiotic host environemental medium
host_of_host_fam_rel relationship type;arbitrary identifier Familial relationship of the host of the symbiotic host organisms to other hosts of symbiotic host organism in the same study; can include multiple relationships https://w3id.org/mixs family|host|host.|relationship|symbiosis true MIXS:0001328 {text};{text} host of the symbiotic host family relationship
host_of_host_geno Observed genotype of the host of the symbiotic host organism https://w3id.org/mixs host|host.|symbiosis string MIXS:0001331 host of the symbiotic host genotype
host_of_host_gravid gravidity status;timestamp Whether or not the host of the symbiotic host organism is gravid, and if yes date due or date post-conception, specifying which is used https://w3id.org/mixs host|host.|symbiosis MIXS:0001333 {boolean};{timestamp} host of the symbiotic host gravidity
host_of_host_infname Taxonomic name information of the host of the symbiotic host organism below subspecies level https://w3id.org/mixs host|host.|symbiosis string MIXS:0001329 host of the symbiotic host infra-specific name
host_of_host_infrank Taxonomic rank information about the host of the symbiotic host organism below subspecies level, such as variety, form, rank etc https://w3id.org/mixs host|host.|rank|symbiosis string MIXS:0001330 host of the symbiotic host infra-specific rank
host_of_host_name snail Common name of the host of the symbiotic host organism https://w3id.org/mixs host|host.|symbiosis string MIXS:0001324 host of the symbiotic host common name
host_of_host_pheno phenotype of the host of the symbiotic organism; PATO Phenotype of the host of the symbiotic host organism. For phenotypic quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato https://w3id.org/mixs host|host.|symbiosis MIXS:0001332 {term} host of the symbiotic host phenotype
host_of_host_sub_id H3 A unique identifier by which each host of the symbiotic host organism subject can be referred to, de-identified, e.g. #H14 https://w3id.org/mixs host|host.|identifier|symbiosis string MIXS:0001327 host of the symbiotic host subject id
host_of_host_taxid 145637 NCBI taxon identifier of the host of the symbiotic taxon organism NCBI taxon id of the host of the symbiotic host organism https://w3id.org/mixs host|host.|identifier|symbiosis|taxon MIXS:0001306 {integer} host of the symbiotic host taxon id
host_of_host_totmass ^{scientific_float}( *- *{scientific_float})? *{text}$ Total mass of the host of the symbiotic host organism at collection, the unit depends on the host https://w3id.org/mixs host|host.|mass|symbiosis|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001334 host of the symbiotic host total mass
host_phenotype PATO or HP Phenotype of human or other host. Use terms from the phenotypic quality ontology (pato) or the Human Phenotype Ontology (HP) https://w3id.org/mixs host|host. MIXS:0000874 {termLabel} [{termID}] host phenotype
host_pred_appr CRISPR spacer match Tool or approach used for host prediction https://w3id.org/mixs sequencing host|host.|predict HostPredApprEnum MIXS:0000088 host prediction approach
host_pred_est_acc CRISPR spacer match: 0 or 1 mismatches, estimated 8% FDR at the host genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048) For each tool or approach used for host prediction, estimated false discovery rates should be included, either computed de novo or from the literature https://w3id.org/mixs sequencing host|host.|predict string MIXS:0000089 host prediction estimated accuracy
host_pulse 65 beats per minute ^{scientific_float}( *- *{scientific_float})? *{text}$ beats per minute Resting pulse, measured as beats per minute https://w3id.org/mixs host|host. ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000333 host pulse
host_sex enumeration example of non-binary from Excel sheets does not match any of the enumerated values Gender or physical sex of the host https://w3id.org/mixs host|host. MIXS:0000811 "[female|hermaphrodite|non-binary|male|transgender|transgender (female to male)|transgender (male to female)
|undeclared]" host sex
host_shape round Morphological shape of host https://w3id.org/mixs host|host. string MIXS:0000261 host shape
host_spec_range 9606 NCBI taxid The range and diversity of host species that an organism is capable of infecting, defined by NCBI taxonomy identifier https://w3id.org/mixs nucleic acid sequence source host|host.|range true MIXS:0000030 {integer} host specificity or range
host_specificity species-specific Level of specificity of symbiont-host interaction: e.g. generalist (symbiont able to establish associations with distantly related hosts) or species-specific https://w3id.org/mixs host|host. HostSpecificityEnum true MIXS:0001308 host specificity
host_subject_id A unique identifier by which each subject can be referred to, de-identified https://w3id.org/mixs host|host.|identifier string MIXS:0000861 host subject id
host_subspecf_genlin serovar:Newport, variety:glabrum, cultivar: Red Delicious Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123 https://w3id.org/mixs host|host.|lineage true MIXS:0001318 {rank name}:{text} host subspecific genetic lineage
host_substrate rock The growth substrate of the host https://w3id.org/mixs host|host. string MIXS:0000252 host substrate
host_symbiont species name or common name The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont can have its own symbionts. For example, parasites may have hyperparasites (=parasites of the parasite) https://w3id.org/mixs host|host.|observed|symbiosis true MIXS:0001298 {text} observed host symbionts
host_taxid NCBI taxon identifier NCBI taxon id of the host, e.g. 9606 https://w3id.org/mixs host|host.|taxon MIXS:0000250 host taxid
host_tot_mass ^{scientific_float}( *- *{scientific_float})? *{text}$ kilogram, gram Total mass of the host at collection, the unit depends on host https://w3id.org/mixs host|host.|mass|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000263 host total mass
host_wet_mass 1500 gram ^{scientific_float}( *- *{scientific_float})? *{text}$ kilogram, gram Measurement of wet mass https://w3id.org/mixs host|host.|mass|wet ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000567 host wet mass
hrt 2013-03-25T12:42:31+01:00 Whether subject had hormone replacement theraphy, and if yes start date https://w3id.org/mixs datetime MIXS:0000969 HRT
humidity ^{scientific_float}( *- *{scientific_float})? *{text}$ Amount of water vapour in the air, at the time of sampling https://w3id.org/mixs humidity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000100 humidity
humidity_regm 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M humidity value;treatment interval and duration gram per cubic meter Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens https://w3id.org/mixs humidity|regimen true MIXS:0000568 {float} {unit};{Rn/start_time/end_time/duration} humidity regimen
hygienic_area Low Hygiene Area Expected value The subdivision of areas within a food production facility according to hygienic requirements. This field accepts terms listed under hygienic food production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that most accurately indicates the hygienic area your sample was taken from according to the definitions provided https://w3id.org/mixs area|food|production MIXS:0001253 {text} hygienic food production area
hysterectomy no Specification of whether hysterectomy was performed https://w3id.org/mixs boolean MIXS:0000287 hysterectomy
ihmc_medication_code 810 Can include multiple medication codes https://w3id.org/mixs code true integer MIXS:0000884 IHMC medication code
indoor_space foyer A distinguishable space within a structure, the purpose for which discrete areas of a building is used https://w3id.org/mixs indoor IndoorSpaceEnum true MIXS:0000763 indoor space
indoor_surf wall Type of indoor surface https://w3id.org/mixs indoor|surface IndoorSurfEnum MIXS:0000764 indoor surface
indust_eff_percent ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage Percentage of industrial effluents received by wastewater treatment plant https://w3id.org/mixs percent ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000662 industrial effluent percent
inorg_particles inorganic particle name;measurement value mole per liter, milligram per liter Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles https://w3id.org/mixs inorganic|particle true MIXS:0000664 {text};{float} {unit} inorganic particles
inside_lux ^{scientific_float}( *- *{scientific_float})? *{text}$ kilowatt per square metre The recorded value at sampling time (power density) https://w3id.org/mixs inside|light ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000168 inside lux light
int_wall_cond damaged The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas https://w3id.org/mixs condition|interior|wall DamagedEnum MIXS:0000813 interior wall condition
intended_consumer 9606 o rsenior as food consumer [FOODON:03510254] FOODON_03510136 or NCBI taxid Food consumer type, human or animal, for which the food product is produced and marketed. This field accepts terms listed under food consumer group (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid https://w3id.org/mixs consumer true MIXS:0001144 {integer}|{termLabel} [{termID}] intended consumer
isol_growth_condt doi:10.1016/j.syapm.2018.01.009 ^{PMID}|{DOI}|{URL}$ Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material https://w3id.org/mixs nucleic acid sequence source condition|growth|isolation ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000003 isolation and growth condition
iw_bt_date_well 2013-03-25T12:42:31+01:00 Injection water breakthrough date per well following a secondary and/or tertiary recovery https://w3id.org/mixs date|water datetime MIXS:0001010 injection water breakthrough date of specific well
iwf 0.79 ^{scientific_float}( *- *{scientific_float})? *{text}$ percent "pattern was ""[0-9]*\\.?[0-9]+ ?%""|percent or float?" Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%) https://w3id.org/mixs fraction|water ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float true MIXS:0000455 injection water fraction
kidney_disord History of kidney disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, kidney disease (https://disease-ontology.org/?id=DOID:557) https://w3id.org/mixs disorder true string MIXS:0000277 urine/kidney disorder
last_clean 2013-03-25T12:42:31+01:00 The last time the floor was cleaned (swept, mopped, vacuumed) https://w3id.org/mixs time datetime MIXS:0000814 last time swept/mopped/vacuumed
lat_lon 50.586825 6.408977 ^{lat} {lon}$ decimal degrees, limit to 8 decimal points The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system https://w3id.org/mixs environment geographic|location ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$ true MIXS:0000009 {float} {float} geographic location (latitude and longitude)
lib_layout paired Specify whether to expect single, paired, or other configuration of reads https://w3id.org/mixs sequencing library LibLayoutEnum MIXS:0000041 library layout
lib_reads_seqd 20 Total number of clones sequenced from the library https://w3id.org/mixs sequencing library integer MIXS:0000040 library reads sequenced
lib_screen enriched, screened, normalized screening strategy name Specific enrichment or screening methods applied before and/or after creating libraries https://w3id.org/mixs sequencing library MIXS:0000043 {text} library screening strategy
lib_size 50 Total number of clones in the library prepared for the project https://w3id.org/mixs sequencing library|size integer MIXS:0000039 library size
lib_vector Bacteriophage P1 vector Cloning vector type(s) used in construction of libraries https://w3id.org/mixs sequencing library MIXS:0000042 {text} library vector
library_prep_kit name of library preparation kit Packaged kits (containing adapters, indexes, enzymes, buffers etc.), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids https://w3id.org/mixs kit|library|preparation MIXS:0001145 {text} library preparation kit
light_intensity 0.3 lux ^{scientific_float}( *- *{scientific_float})? *{text}$ lux Measurement of light intensity https://w3id.org/mixs intensity|light ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000706 light intensity
light_regm incandescant light;10 lux;450 nanometer exposure type;light intensity;light quality lux; micrometer, nanometer, angstrom Information about treatment(s) involving exposure to light, including both light intensity and quality https://w3id.org/mixs light|regimen MIXS:0000569 {text};{float} {unit};{float} {unit} light regimen
light_type desk lamp Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light https://w3id.org/mixs light|type true LightTypeEnum true MIXS:0000769 light type
link_addit_analys ^{PMID}|{DOI}|{URL}$ Link to additional analysis results performed on the sample https://w3id.org/mixs link ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000340 links to additional analysis
link_class_info PMID,DOI or url Link to digitized soil maps or other soil classification information https://w3id.org/mixs classification|information|link MIXS:0000329 {termLabel} [{termID}] link to classification information
link_climate_info ^{PMID}|{DOI}|{URL}$ Link to climate resource https://w3id.org/mixs information|link ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000328 link to climate information
lithology Volcanic "Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs lithology LithologyEnum true MIXS:0000990 lithology
liver_disord History of liver disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, liver disease (https://disease-ontology.org/?id=DOID:409) https://w3id.org/mixs disorder true string MIXS:0000282 liver disorder
local_class local classification name Soil classification based on local soil classification system https://w3id.org/mixs classification MIXS:0000330 {text} soil_taxonomic/local classification
local_class_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in determining the local soil classification https://w3id.org/mixs classification|method ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000331 soil_taxonomic/local classification method
lot_number 1239ABC01A, split Cornish hens lot number, item A distinctive alpha-numeric identification code assigned by the manufacturer or distributor to a specific quantity of manufactured material or product within a batch. Synonym: Batch Number. The submitter should provide lot number of the item followed by the item name for which the lot number was provided https://w3id.org/mixs number true MIXS:0001147 {integer}, {text} lot number
mag_cov_software bbmap Tool(s) used to determine the genome coverage if coverage is used as a binning parameter in the extraction of genomes from metagenomic datasets https://w3id.org/mixs sequencing software MagCovSoftwareEnum MIXS:0000080 MAG coverage software
magnesium 52.8 micromole per kilogram ^{scientific_float}( *- *{scientific_float})? *{text}$ mole per liter, milligram per liter, parts per million, micromole per kilogram Concentration of magnesium in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000431 magnesium
maternal_health_stat Specification of the maternal health status https://w3id.org/mixs status string MIXS:0000273 amniotic fluid/maternal health status
max_occup ^{integer} {text}$ The maximum amount of people allowed in the indoor environment https://w3id.org/mixs maximum ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000229 maximum occupancy
mean_frict_vel 0.5 meter per second ^{scientific_float}( *- *{scientific_float})? *{text}$ meter per second Measurement of mean friction velocity https://w3id.org/mixs mean|velocity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000498 mean friction velocity
mean_peak_frict_vel 1 meter per second ^{scientific_float}( *- *{scientific_float})? *{text}$ meter per second Measurement of mean peak friction velocity https://w3id.org/mixs mean|peak|velocity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000502 mean peak friction velocity
mech_struc elevator mechanical structure: a moving structure https://w3id.org/mixs MechStrucEnum MIXS:0000815 mechanical structure
mechanical_damage pruning;bark damage type;body site Information about any mechanical damage exerted on the plant; can include multiple damages and sites https://w3id.org/mixs true MIXS:0001052 {text};{text} mechanical damage
medic_hist_perform 1 Whether full medical history was collected https://w3id.org/mixs history boolean MIXS:0000897 medical history performed
menarche 2013-03-25T12:42:31+01:00 Date of most recent menstruation https://w3id.org/mixs datetime MIXS:0000965 menarche
menopause 2013-03-25T12:42:31+01:00 Date of onset of menopause https://w3id.org/mixs datetime MIXS:0000968 menopause
methane ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, parts per billion, parts per million Methane (gas) amount or concentration at the time of sampling https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000101 methane
micro_biomass_meth http://dx.doi.org/10.1016/j.soilbio.2005.01.021 ^{PMID}|{DOI}|{URL}$ slot name/scn was microbial_biomass_meth Reference or method used in determining microbial biomass https://w3id.org/mixs biomass|method|microbial ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000339 microbial biomass method
microb_cult_med brain heart infusion agar [MICRO:0000566] ^{text}|({termLabel} \[{termID}\])$ A culture medium used to select for, grow, and maintain prokaryotic microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar) forms. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the culture medium https://w3id.org/mixs culture|microbiological ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ string MIXS:0001216 microbiological culture medium
microb_start starter cultures [FOODON:03544454] FOODON:03544453 Any type of microorganisms used in food production. This field accepts terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453) https://w3id.org/mixs microbial MIXS:0001217 {term label} [{termID}]|{text} microbial starter
microb_start_count total prokaryotes;3.5e9 colony forming units per milliliter;spread plate organism name; measurement value; enumeration colony forming units per milliliter; colony forming units per gram of dry weight Total cell count of starter culture per gram, volume or area of sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per ml; qPCR) https://w3id.org/mixs count|microbial|organism MIXS:0001218 {text};{float} {unit};[ATP|MPN|qPCR|spread plate|other] microbial starter organism count
microb_start_inoc 100 milligrams ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram or gram The amount of starter culture used to inoculate a new batch https://w3id.org/mixs microbial ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001219 microbial starter inoculation
microb_start_prep liquid starter culture, propagated 3 cycles in milk prior to inoculation Information about the protocol or method used to prepare the starter inoculum https://w3id.org/mixs microbial|preparation string MIXS:0001220 microbial starter preparation
microb_start_source backslopped, GetCulture The source from which the microbial starter culture was sourced. If commercially supplied, list supplier https://w3id.org/mixs microbial|source string MIXS:0001221 microbial starter source
microb_start_taxID Lactobacillus rhamnosus [NCIT:C123495] ^({termLabel} \[{termID}\])|{integer}$ Please include Genus species and strain ID, if known of microorganisms used in food production. For complex communities, pipes can be used to separate two or more microbes https://w3id.org/mixs identifier|microbial|ncbi|taxon ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ string MIXS:0001222 microbial starter NCBI taxonomy ID
microbial_biomass ^{scientific_float}( *- *{scientific_float})? *{text}$ ton, kilogram, gram per kilogram soil The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units https://w3id.org/mixs biomass|microbial ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000650 microbial biomass
mid GTGAATAT ^{ambiguous_nucleotides}$ Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters https://w3id.org/mixs sequencing identifier ^[ACGTRKSYMWBHDVN]+$ string MIXS:0000047 multiplex identifiers
mineral_nutr_regm potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M mineral nutrient name;mineral nutrient amount;treatment interval and duration gram, mole per liter, milligram per liter Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens https://w3id.org/mixs mineral|nutrient|regimen true MIXS:0000570 {text};{float} {unit};{Rn/start_time/end_time/duration} mineral nutrient regimen
misc_param Bicarbonate ion concentration;2075 micromole per kilogram parameter name;measurement value Any other measurement performed or parameter collected, that is not listed here https://w3id.org/mixs parameter true MIXS:0000752 {text};{float} {unit} miscellaneous parameter
mode_transmission horizontal:castrator The process through which the symbiotic host organism entered the host from which it was sampled https://w3id.org/mixs ModeTransmissionEnum true MIXS:0001312 mode of transmission
n_alkanes n-hexadecane;100 milligram per liter n-alkane name;measurement value Concentration of n-alkanes; can include multiple n-alkanes https://w3id.org/mixs true MIXS:0000503 {text};{float} {unit} n-alkanes
neg_cont_type enumeration or text The substance or equipment used as a negative control in an investigation https://w3id.org/mixs investigation type NegContTypeEnum true MIXS:0001321 negative control type
nitrate 65 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of nitrate in the sample https://w3id.org/mixs nitrate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000425 nitrate
nitrite 0.5 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of nitrite in the sample https://w3id.org/mixs nitrite ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000426 nitrite
nitro 4.2 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Concentration of nitrogen (total) https://w3id.org/mixs nitrogen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000504 nitrogen
non_min_nutr_regm https://phylogenomics.me/protocols/16s-pcr-protocol/ gram, mole per liter, milligram per liter Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens https://w3id.org/mixs non-mineral|nutrient|regimen true string MIXS:0000571 non-mineral nutrient regimen
nose_mouth_teeth_throat_disord History of nose/mouth/teeth/throat disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091), or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974) https://w3id.org/mixs disorder true string MIXS:0000283 nose/mouth/teeth/throat disorder
nose_throat_disord History of nose-throat disorders; can include multiple disorders, The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974) https://w3id.org/mixs disorder true string MIXS:0000270 nose throat disorder
nucl_acid_amp https://phylogenomics.me/protocols/16s-pcr-protocol/ ^{PMID}|{DOI}|{URL}$ A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids https://w3id.org/mixs sequencing ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000038 nucleic acid amplification
nucl_acid_ext https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf ^{PMID}|{DOI}|{URL}$ A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample https://w3id.org/mixs sequencing ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000037 nucleic acid extraction
nucl_acid_ext_kit Qiagen PowerSoil Kit The name of an extraction kit The name of the extraction kit used to recover the nucleic acid fraction of an input material is performed https://w3id.org/mixs kit true MIXS:0001223 {text} nucleic acid extraction kit
num_replicons 2 for eukaryotes and bacteria: chromosomes (haploid count); for viruses: segments Reports the number of replicons in a nuclear genome of eukaryotes, in the genome of a bacterium or archaea or the number of segments in a segmented virus. Always applied to the haploid chromosome count of a eukaryote https://w3id.org/mixs nucleic acid sequence source number integer MIXS:0000022 {integer} number of replicons
num_samp_collect 116 samples ^{scientific_float}( *- *{scientific_float})? *{text}$ The number of samples collected during the current sampling event https://w3id.org/mixs number|sample ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001224 number of samples collected
number_contig 40 Total number of contigs in the cleaned/submitted assembly that makes up a given genome, SAG, MAG, or UViG https://w3id.org/mixs sequencing number integer MIXS:0000060 number of contigs
number_pets ^{integer} {text}$ The number of pets residing in the sampled space https://w3id.org/mixs number ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000231 number of pets
number_plants ^{integer} {text}$ The number of plant(s) in the sampling space https://w3id.org/mixs number ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000230 number of houseplants
number_resident ^{integer} {text}$ The number of individuals currently occupying in the sampling location https://w3id.org/mixs number ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000232 number of residents
occup_density_samp 0.1 Average number of occupants at time of sampling per square footage https://w3id.org/mixs density float true MIXS:0000217 occupant density at sampling
occup_document estimate The type of documentation of occupancy https://w3id.org/mixs documentation OccupDocumentEnum MIXS:0000816 occupancy documentation
occup_samp 10 ^{integer} {text}$ Number of occupants present at time of sample within the given space https://w3id.org/mixs ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float true MIXS:0000772 occupancy at sampling
org_carb 1.5 microgram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Concentration of organic carbon https://w3id.org/mixs carbon|organic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000508 organic carbon
org_count_qpcr_info gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles number of cells per gram (or ml or cm^2) If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles) https://w3id.org/mixs count|information|organism MIXS:0000099 {text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles organism count qPCR information
org_matter 1.75 milligram per cubic meter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter Concentration of organic matter https://w3id.org/mixs organic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000204 organic matter
org_nitro 4 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Concentration of organic nitrogen https://w3id.org/mixs nitrogen|organic ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000205 organic nitrogen
org_particles particle name;measurement value gram per liter Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc https://w3id.org/mixs organic|particle true MIXS:0000665 {text};{float} {unit} organic particles
organism_count organism name;measurement value;enumeration Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr) https://w3id.org/mixs count|organism true MIXS:0000103 {text};{float} {unit};[ATP|MPN|qPCR|other] organism count
otu_class_appr 95% ANI;85% AF; greedy incremental clustering cutoffs and method used Cutoffs and approach used when clustering species-level OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUS defined from another set of thresholds, even if the latter are the ones primarily used during the analysis https://w3id.org/mixs sequencing classification|otu MIXS:0000085 {ANI cutoff};{AF cutoff};{clustering method} OTU classification approach
otu_db NCBI Viral RefSeq;83 database and version "Reference database (i.e. sequences not generated as part of the current study) used to cluster new genomes in ""species-level"" OTUs, if any" https://w3id.org/mixs sequencing database|otu MIXS:0000087 {database};{version} OTU database
otu_seq_comp_appr blastn;2.6.0+;e-value cutoff: 0.001 software name, version and relevant parameters "Tool and thresholds used to compare sequences when computing ""species-level"" OTUs" https://w3id.org/mixs sequencing otu MIXS:0000086 {software};{version};{parameters} OTU sequence comparison approach
owc_tvdss ^{scientific_float}( *- *{scientific_float})? *{text}$ meter Depth of the original oil water contact (OWC) zone (average) (m TVDSS) https://w3id.org/mixs depth|oil|water ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000405 oil water contact depth
oxy_stat_samp aerobic Oxygenation status of sample https://w3id.org/mixs oxygen|sample|status OxyStatSampEnum MIXS:0000753 oxygenation status of sample
oxygen 600 parts per million ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Oxygen (gas) amount or concentration at the time of sampling https://w3id.org/mixs oxygen ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000104 oxygen
part_org_carb 1.92 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ Concentration of particulate organic carbon https://w3id.org/mixs carbon|organic|particle|particulate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000515 particulate organic carbon
part_org_nitro 0.3 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, micromole per liter Concentration of particulate organic nitrogen https://w3id.org/mixs nitrogen|organic|particle|particulate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000719 particulate organic nitrogen
part_plant_animal chuck [FOODON:03530021] FOODON:03420116 The anatomical part of the organism being involved in food production or consumption; e.g., a carrot is the root of the plant (root vegetable). This field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116) https://w3id.org/mixs animal|plant true MIXS:0001149 {text}|{termLabel} [{termID}] part of plant or animal
particle_class particle name;measurement value micrometer Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values https://w3id.org/mixs classification|particle true MIXS:0000206 {text};{float} {unit} particle classification
pathogenicity human, animal, plant, fungi, bacteria names of organisms that the entity is pathogenic to To what is the entity pathogenic https://w3id.org/mixs nucleic acid sequence source MIXS:0000027 {text} known pathogenicity
pcr_cond initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...' https://w3id.org/mixs sequencing condition|pcr MIXS:0000049 initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles pcr conditions
pcr_primers FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT FWD: forward primer sequence;REV:reverse primer sequence PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters https://w3id.org/mixs sequencing pcr MIXS:0000046 FWD:{dna};REV:{dna} pcr primers
permeability measurement value range mD Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences)) https://w3id.org/mixs MIXS:0000404 {integer} - {integer} {unit} permeability
perturbation antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M perturbation type name;perturbation interval and duration Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types https://w3id.org/mixs perturbation true MIXS:0000754 {text};{Rn/start_time/end_time/duration} perturbation
pesticide_regm pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M gram, mole per liter, milligram per liter Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens https://w3id.org/mixs regimen true string MIXS:0000573 pesticide regimen
pet_farm_animal yes; 5 cats presence status;type of animal or pet Specification of presence of pets or farm animals in the environment of subject, if yes the animals should be specified; can include multiple animals present https://w3id.org/mixs animal|farm|presence true MIXS:0000267 {boolean};{text} presence of pets or farm animals
petroleum_hydrocarb 0.05 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Concentration of petroleum hydrocarbon https://w3id.org/mixs hydrocarbon|petroleum ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000516 petroleum hydrocarbon
ph 7.2 Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid https://w3id.org/mixs ph float MIXS:0001001 pH
ph_meth https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf ^{PMID}|{DOI}|{URL}$ Reference or method used in determining pH https://w3id.org/mixs method|ph ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0001106 pH method
ph_regm 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen https://w3id.org/mixs ph|regimen true string MIXS:0001056 pH regimen
phaeopigments 2.5 milligram per cubic meter phaeopigment name;measurement value milligram per cubic meter Concentration of phaeopigments; can include multiple phaeopigments https://w3id.org/mixs true MIXS:0000180 {text};{float} {unit} phaeopigments
phosphate 0.7 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Concentration of phosphate https://w3id.org/mixs phosphate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000505 phosphate
phosplipid_fatt_acid 2.98 milligram per liter phospholipid fatty acid name;measurement value Concentration of phospholipid fatty acids; can include multiple values https://w3id.org/mixs true MIXS:0000181 {text};{float} {unit} phospholipid fatty acid
photon_flux 3.926 micromole photons per second per square meter ^{scientific_float}( *- *{scientific_float})? *{text}$ number of photons per second per unit area Measurement of photon flux https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000725 photon flux
photosynt_activ 0.1 mol CO2 m-2 s-1 ^{scientific_float}( *- *{scientific_float})? *{text}$ mol m-2 s-1 Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll fluorescence emissions / reflectance / transpiration) Please also include the term method term detailing the method of activity measurement https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0001296 photosynthetic activity
photosynt_activ_meth ^{PMID}|{DOI}|{URL}|{text}$ Reference or method used in measurement of photosythetic activity https://w3id.org/mixs method true ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0001336 photosynthetic activity method
plant_growth_med EO or enumeration Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary https://w3id.org/mixs growth|plant MIXS:0001057 {termLabel} [{termID}] or [husk|other artificial liquid medium|other artificial solid medium|peat moss|perlite|pumice|sand|soil|vermiculite|water] plant growth medium
plant_part_maturity ripe or mature [FOODON:03530052] FOODON:03530050 A description of the stage of development of a plant or plant part based on maturity or ripeness. This field accepts terms listed under degree of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050) https://w3id.org/mixs degree|plant MIXS:0001120 {term label}{term ID} degree of plant part maturity
plant_product xylem sap [PO:0025539] product name Substance produced by the plant, where the sample was obtained from https://w3id.org/mixs plant|product MIXS:0001058 {text} plant product
plant_reprod_crop seedling Plant reproductive part used in the field during planting to start the crop https://w3id.org/mixs plant true PlantReprodCropEnum MIXS:0001150 plant reproductive part
plant_sex Hermaphroditic Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite https://w3id.org/mixs plant PlantSexEnum MIXS:0001059 plant sex
plant_struc epidermis [PO:0005679] ^{termLabel} \[{termID}\]$ Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here https://w3id.org/mixs plant ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001060 plant structure
plant_water_method drip irrigation process [AGRO:00000056] ^{termLabel} \[{termID}\]$ Description of the equipment or method used to distribute water to crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). Multiple terms can be separated by pipes https://w3id.org/mixs delivery|method|plant|water ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string true MIXS:0001111 plant water delivery method
ploidy allopolyploidy [PATO:0001379] ^{termLabel} \[{termID}\]$ The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer to http://purl.bioontology.org/ontology/PATO https://w3id.org/mixs nucleic acid sequence source ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0000021 ploidy
pollutants lead;0.15 microgram per cubic meter pollutant name;measurement value gram, mole per liter, milligram per liter, microgram per cubic meter Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant https://w3id.org/mixs true MIXS:0000107 {text};{float} {unit} pollutants
pool_dna_extracts yes, 5 pooling status;number of pooled extracts gram, milliliter, microliter Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given https://w3id.org/mixs dna|pooling MIXS:0000325 pooling of DNA extracts (if done)
porosity measurement value or range percentage Porosity of deposited sediment is volume of voids divided by the total volume of sample https://w3id.org/mixs porosity MIXS:0000211 {float} - {float} {unit} porosity
pos_cont_type The substance, mixture, product, or apparatus used to verify that a process which is part of an investigation delivers a true positive https://w3id.org/mixs investigation type true MIXS:0001322 {term} or {text} positive control type
potassium 463 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of potassium in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000430 potassium
pour_point ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point) https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000127 pour point
pre_treatment pre-treatment type The process of pre-treatment removes materials that can be easily collected from the raw wastewater https://w3id.org/mixs MIXS:0000348 {text} pre-treatment
pred_genome_struc non-segmented Expected structure of the viral genome https://w3id.org/mixs sequencing predict PredGenomeStrucEnum MIXS:0000083 predicted genome structure
pred_genome_type dsDNA enumeration Type of genome predicted for the UViG https://w3id.org/mixs sequencing predict|type MIXS:0000082 [DNA|dsDNA|ssDNA|RNA|dsRNA|ssRNA|ssRNA (+)|ssRNA (-)|mixed|uncharacterized] predicted genome type
pregnancy 2013-03-25T12:42:31+01:00 Date due of pregnancy https://w3id.org/mixs datetime MIXS:0000966 pregnancy
pres_animal_insect cat;5 enumeration;count The type and number of animals or insects present in the sampling space https://w3id.org/mixs animal|presence MIXS:0000819 [cat|dog|rodent|snake|other];{integer} presence of pets, animals, or insects
pressure 50 atmosphere ^{scientific_float}( *- *{scientific_float})? *{text}$ atmosphere Pressure to which the sample is subject to, in atmospheres https://w3id.org/mixs pressure ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000412 pressure
prev_land_use_meth ^{PMID}|{DOI}|{URL}$ Reference or method used in determining previous land use and dates https://w3id.org/mixs history|land|method|use ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000316 history/previous land use method
previous_land_use fallow; 2018-05-11:T14:30Z land use name;date Previous land use and dates https://w3id.org/mixs history|land|use MIXS:0000315 {text};{timestamp} history/previous land use
primary_prod 100 milligram per cubic meter per day ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per cubic meter per day, gram per square meter per day Measurement of primary production, generally measured as isotope uptake https://w3id.org/mixs primary|production ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000728 primary production
primary_treatment primary treatment type The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed https://w3id.org/mixs primary|treatment MIXS:0000349 {text} primary treatment
prod_label_claims free range "Labeling claims containing descriptors such as wild caught, free-range, organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can include more than one term, separated by "";""" https://w3id.org/mixs production true string MIXS:prod_label_claims production labeling claims
prod_rate ^{scientific_float}( *- *{scientific_float})? *{text}$ cubic meter per day Oil and/or gas production rates per well (e.g. 524 m3 / day) https://w3id.org/mixs production|rate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000452 production rate
prod_start_date 2013-03-25T12:42:31+01:00 Date of field's first production https://w3id.org/mixs date|production|start datetime true MIXS:0001008 production start date
profile_position summit Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas https://w3id.org/mixs ProfilePositionEnum MIXS:0001084 profile position
project_name Forest soil metagenome Name of the project within which the sequencing was organized https://w3id.org/mixs investigation project string true MIXS:0000092 project name
propagation lytic for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid: incompatibility group; for eukaryote: asexual, sexual; other more specific values (e.g., incompatibility group) are allowed The type of reproduction from the parent stock. Values for this field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual https://w3id.org/mixs nucleic acid sequence source MIXS:0000033 {text} propagation
pulmonary_disord History of pulmonary disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850) https://w3id.org/mixs disorder true string MIXS:0000269 lung/pulmonary disorder
quad_pos West side The quadrant position of the sampling room within the building https://w3id.org/mixs QuadPosEnum MIXS:0000820 quadrant position
radiation_regm gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M radiation type name;radiation amount;treatment interval and duration rad, gray Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens https://w3id.org/mixs regimen true MIXS:0000575 {text};{float} {unit};{Rn/start_time/end_time/duration} radiation regimen
rainfall_regm 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M measurement value;treatment interval and duration millimeter Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens https://w3id.org/mixs rain|regimen true MIXS:0000576 {float} {unit};{Rn/start_time/end_time/duration} rainfall regimen
reactor_type reactor type name Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage https://w3id.org/mixs type MIXS:0000350 {text} reactor type
reassembly_bin no Has an assembly been performed on a genome bin extracted from a metagenomic assembly? https://w3id.org/mixs sequencing post boolean MIXS:0000079 reassembly post binning
redox_potential 300 millivolt ^{scientific_float}( *- *{scientific_float})? *{text}$ millivolt Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000182 redox potential
ref_biomaterial doi:10.1016/j.syapm.2018.01.009 ^{PMID}|{DOI}|{URL}$ Primary publication if isolated before genome publication; otherwise, primary genome report https://w3id.org/mixs nucleic acid sequence source ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000025 reference for biomaterial
ref_db pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 doi:10.1093/nar/gkw975 names, versions, and references of databases List of database(s) used for ORF annotation, along with version number and reference to website or publication https://w3id.org/mixs sequencing database MIXS:0000062 {database};{version};{reference} reference database(s)
rel_air_humidity 0.8 ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage percent or float? Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air https://w3id.org/mixs air|humidity|relative ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float true MIXS:0000121 relative air humidity
rel_humidity_out 12 per kilogram of air ^{scientific_float}( *- *{scientific_float})? *{text}$ gram of air, kilogram of air The recorded outside relative humidity value at the time of sampling https://w3id.org/mixs humidity|relative ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000188 outside relative humidity
rel_location furrow Location of sampled soil to other parts of the farm e.g. under crop plant, near irrigation ditch, from the dirt road https://w3id.org/mixs location|relative|sample string MIXS:0001161 relative location of sample
rel_samp_loc center of car The sampling location within the train car https://w3id.org/mixs location|relative RelSampLocEnum MIXS:0000821 relative sampling location
rel_to_oxygen aerobe Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments https://w3id.org/mixs nucleic acid sequence source oxygen|relationship RelToOxygenEnum MIXS:0000015 relationship to oxygen
repository_name FDA CFSAN Microbiology Laboratories Institution "The name of the institution where the sample or DNA extract is held or ""sample not available"" if the sample was used in its entirety for analysis or otherwise not retained" https://w3id.org/mixs true MIXS:0001152 {text} repository name
reservoir Name of the reservoir (e.g. Carapebus) https://w3id.org/mixs string true MIXS:0000303 reservoir name
resins_pc ^{name};{float} {unit}$ percent Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) https://w3id.org/mixs ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000134 resins wt%
room_air_exch_rate ^{scientific_float}( *- *{scientific_float})? *{text}$ liter per hour The rate at which outside air replaces indoor air in a given space https://w3id.org/mixs air|rate|room ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000169 room air exchange rate
room_architec_elem The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure https://w3id.org/mixs room string MIXS:0000233 room architectural elements
room_condt new The condition of the room at the time of sampling https://w3id.org/mixs condition|room RoomCondtEnum MIXS:0000822 room condition
room_connected office List of rooms connected to the sampling room by a doorway https://w3id.org/mixs doorway|room RoomConnectedEnum MIXS:0000826 rooms connected by a doorway
room_count The total count of rooms in the built structure including all room types https://w3id.org/mixs count|room integer MIXS:0000234 room count
room_dim 4 meter x 4 meter x 4 meter measurement value meter The length, width and height of sampling room https://w3id.org/mixs dimensions|room MIXS:0000192 {integer} {unit} x {integer} {unit} x {integer} {unit} room dimensions
room_door_dist ^{integer} {text}$ meter Distance between doors (meters) in the hallway between the sampling room and adjacent rooms https://w3id.org/mixs distance|door|room ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000193 room door distance
room_door_share ^{room_name};{room_number}$ List of room(s) (room number, room name) sharing a door with the sampling room https://w3id.org/mixs door|room ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ string MIXS:0000242 rooms that share a door with sampling room
room_hallway ^{room_name};{room_number}$ List of room(s) (room number, room name) located in the same hallway as sampling room https://w3id.org/mixs hallway|room ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ string MIXS:0000238 rooms that are on the same hallway
room_loc interior room The position of the room within the building https://w3id.org/mixs location|room RoomLocEnum MIXS:0000823 room location in building
room_moist_dam_hist The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed https://w3id.org/mixs history|moisture|room integer MIXS:0000235 room moisture damage or mold history
room_net_area ^{integer} {text}$ square feet, square meter The net floor area of sampling room. Net area excludes wall thicknesses https://w3id.org/mixs area|room ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000194 room net area
room_occup ^{integer} {text}$ Count of room occupancy at time of sampling https://w3id.org/mixs room ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000236 room occupancy
room_samp_pos south corner The horizontal sampling position in the room relative to architectural elements https://w3id.org/mixs room RoomSampPosEnum MIXS:0000824 room sampling position
room_type bathroom enumeration The main purpose or activity of the sampling room. A room is any distinguishable space within a structure https://w3id.org/mixs room|type MIXS:0000825 [attic|bathroom|closet|conference room|elevator|examining room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse] room type
room_vol ^{integer} {text}$ cubic feet, cubic meter Volume of sampling room https://w3id.org/mixs room|volume ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000195 room volume
room_wall_share ^{room_name};{room_number}$ List of room(s) (room number, room name) sharing a wall with the sampling room https://w3id.org/mixs room|wall ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ string MIXS:0000243 rooms that share a wall with sampling room
room_window_count Number of windows in the room https://w3id.org/mixs count|room|window integer MIXS:0000237 room window count
root_cond http://himedialabs.com/TD/PT158.pdf ^{PMID}|{DOI}|{URL}|{text}$ Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container https://w3id.org/mixs condition ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001061 rooting conditions
root_med_carbon sucrose carbon source name;measurement value milligram per liter Source of organic carbon in the culture rooting medium; e.g. sucrose https://w3id.org/mixs carbon MIXS:0000577 {text};{float} {unit} rooting medium carbon
root_med_macronutr KH2PO4;170 milligram per liter macronutrient name;measurement value milligram per liter Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170 mg/L) https://w3id.org/mixs macronutrients MIXS:0000578 {text};{float} {unit} rooting medium macronutrients
root_med_micronutr H3BO3;6.2 milligram per liter micronutrient name;measurement value milligram per liter Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L) https://w3id.org/mixs micronutrients MIXS:0000579 {text};{float} {unit} rooting medium micronutrients
root_med_ph 7.5 pH measurement of the culture rooting medium; e.g. 5.5 https://w3id.org/mixs ph float MIXS:0001062 rooting medium pH
root_med_regl abscisic acid;0.75 milligram per liter regulator name;measurement value milligram per liter Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA https://w3id.org/mixs MIXS:0000581 {text};{float} {unit} rooting medium regulators
root_med_solid agar Specification of the solidifying agent in the culture rooting medium; e.g. agar https://w3id.org/mixs string MIXS:0001063 rooting medium solidifier
root_med_suppl nicotinic acid;0.5 milligram per liter supplement name;measurement value milligram per liter Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5 mg/L) https://w3id.org/mixs organic MIXS:0000580 {text};{float} {unit} rooting medium organic supplements
route_transmission Description of path taken by the symbiotic host organism being sampled in order to establish a symbiotic relationship with the host (with which it was observed at the time of sampling) via a mode of transmission (specified in mode_transmission) https://w3id.org/mixs route RouteTransmissionEnum MIXS:0001316 route of transmission
salinity 25 practical salinity unit ^{scientific_float}( *- *{scientific_float})? *{text}$ practical salinity unit, percentage The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater https://w3id.org/mixs salinity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000183 salinity
salt_regm NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M gram, microgram, mole per liter, gram per liter Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens https://w3id.org/mixs regimen|salt true string MIXS:0000582 salt regimen
samp_capt_status farm sample Reason for the sample https://w3id.org/mixs sample|status SampCaptStatusEnum MIXS:0000860 sample capture status
samp_collect_device device name The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094) https://w3id.org/mixs nucleic acid sequence source device|sample MIXS:0000002 {termLabel} [{termID}]|{text} sample collection device
samp_collect_method ^{PMID}|{DOI}|{URL}|{text}$ The method employed for collecting the sample https://w3id.org/mixs nucleic acid sequence source method|sample ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001225 sample collection method
samp_collect_point well "Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs sample SampCollectPointEnum true MIXS:0001015 sample collection point
samp_dis_stage infection Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen https://w3id.org/mixs disease|sample SampDisStageEnum MIXS:0000249 sample disease stage
samp_floor 4th floor enumeration The floor of the building, where the sampling room is located https://w3id.org/mixs floor MIXS:0000828 [1st floor|2nd floor|{integer} floor|basement|lobby] sampling floor
samp_loc_condition new The condition of the sample location at the time of sampling https://w3id.org/mixs condition|location|sample SampLocConditionEnum MIXS:0001257 sample location condition
samp_loc_corr_rate ^{float} *- *{float} {unit}$ millimeter per year Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays https://w3id.org/mixs location|rate|sample ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000136 corrosion rate at sample location
samp_mat_process filtering of seawater, storing samples in ethanol A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed https://w3id.org/mixs nucleic acid sequence source material|process|sample string MIXS:0000016 sample material processing
samp_md 1534 meter;MSL measurement value;enumeration meter "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs depth|measurement|sample MIXS:0000413 {float} {unit};[GL|DF|RT|KB|MSL|other] sample measured depth
samp_name ISDsoil1 A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name https://w3id.org/mixs investigation sample string true MIXS:0001107 sample name
samp_pooling 5uL of extracted genomic DNA from 5 leaves were pooled Physical combination of several instances of like material, e.g. RNA extracted from samples or dishes of cell cultures into one big aliquot of cells. Please provide a short description of the samples that were pooled https://w3id.org/mixs pooling|sample true string MIXS:0001153 sample pooling
samp_preserv ^{name};{float} {unit}$ milliliter Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) https://w3id.org/mixs sample ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000463 preservative added to sample
samp_purpose field trial enumeration or {text} The reason that the sample was collected https://w3id.org/mixs purpose MIXS:0001151 [active surveillance in response to an outbreak|active surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental assessment|farm sample|field trial|for cause|industry internal investigation|market sample|passive surveillance|population based studies|research|research and development] or {text} purpose of sampling
samp_rep_biol 6 replicates ^{scientific_float}( *- *{scientific_float})? *{text}$ Measurements of biologically distinct samples that show biological variation https://w3id.org/mixs sample ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001226 biological sample replicate
samp_rep_tech 10 replicates ^{scientific_float}( *- *{scientific_float})? *{text}$ Repeated measurements of the same sample that show independent measures of the noise associated with the equipment and the protocols https://w3id.org/mixs sample ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001227 technical sample replicate
samp_room_id Sampling room number. This ID should be consistent with the designations on the building floor plans https://w3id.org/mixs identifier|room integer MIXS:0000244 sampling room ID or name
samp_size 5 liter ^{scientific_float}( *- *{scientific_float})? *{text}$ The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected https://w3id.org/mixs nucleic acid sequence source sample|size ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000001 amount or size of sample collected
samp_sort_meth Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor https://w3id.org/mixs method|sample|size true string MIXS:0000216 sample size sorting method
samp_source_mat_cat environmental (swab or sampling) [GENEPIO:0001732] GENEPIO:0001237 This is the scientific role or category that the subject organism or material has with respect to an investigation. This field accepts terms listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 or http://purl.obolibrary.org/obo/OBI_0100051) https://w3id.org/mixs material|sample|source MIXS:0001154 {termLabel} [{termID}] sample source material category
samp_stor_device Whirl Pak sampling bag [GENEPIO:0002122] NCIT:C4318 The container used to store the sample. This field accepts terms listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the proper descriptor is not listed please use text to describe the storage device https://w3id.org/mixs device|sample|storage MIXS:0001228 {text}|{termLabel} [{termID}] sample storage device
samp_stor_media peptone water medium [MICRO:0000548] ^{text}|({termLabel} \[{termID}\])$ The liquid that is added to the sample collection device prior to sampling. If the sample is pre-hydrated, indicate the liquid media the sample is pre-hydrated with for storage purposes. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the sample storage media https://w3id.org/mixs sample|storage ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ string MIXS:0001229 sample storage media
samp_store_dur P1Y6M ^{duration}$ Duration for which the sample was stored. Indicate the duration for which the sample was stored written in ISO 8601 format https://w3id.org/mixs duration|period|sample|storage ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0000116 sample storage duration
samp_store_loc Freezer no:5 location name Location at which sample was stored, usually name of a specific freezer/room https://w3id.org/mixs location|sample|storage MIXS:0000755 {text} sample storage location
samp_store_sol 5% ethanol solution name Solution within which sample was stored, if any https://w3id.org/mixs sample|storage MIXS:0001317 {text} sample storage solution
samp_store_temp -80 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature at which sample was stored, e.g. -80 degree Celsius https://w3id.org/mixs sample|storage|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000110 sample storage temperature
samp_subtype biofilm "Name of sample sub-type. For example if ""sample type"" is ""Produced Water"" then subtype could be ""Oil Phase"" or ""Water Phase"". If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs sample SampSubtypeEnum true MIXS:0000999 sample subtype
samp_surf_moisture submerged Degree of water held on a sampled surface. If present, user can state the degree of water held on surface (intermittent moisture, submerged). If no surface moisture is present indicate not present https://w3id.org/mixs moisture|sample|surface true SampSurfMoistureEnum MIXS:0001256 sample surface moisture
samp_taxon_id Gut Metagenome [NCBITaxon:749906] ^{text} \[{NCBItaxon_id}\]$ NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls https://w3id.org/mixs investigation dna|identifier|sample|taxon ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$ string true MIXS:0001320 taxonomy ID of DNA sample
samp_time_out time hour The recent and long term history of outside sampling https://w3id.org/mixs time MIXS:0000196 {float} sampling time outside
samp_transport_cond 5 days;-20 degree Celsius measurement value;measurement value days;degree Celsius Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 C) https://w3id.org/mixs condition|sample|transport MIXS:0000410 {float} {unit};{float} {unit} sample transport conditions
samp_transport_cont cooler Conatiner in which the sample was stored during transport. Indicate the location name https://w3id.org/mixs sample|transport SampTransportContEnum MIXS:0001230 sample transport container
samp_transport_dur P10D ^{duration}$ days The duration of time from when the sample was collected until processed. Indicate the duration for which the sample was stored written in ISO 8601 format https://w3id.org/mixs duration|period|sample|transport ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0001231 sample transport duration
samp_transport_temp 4 degree Celsius text or measurement value degree Celsius Temperature at which sample was transported, e.g. -20 or 4 degree Celsius https://w3id.org/mixs sample|temperature|transport MIXS:0001232 {float} {unit} {text} sample transport temperature
samp_tvdss measurement value or measurement value range meter Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m https://w3id.org/mixs depth|sample true MIXS:0000409 {float}-{float} {unit} sample true vertical depth subsea
samp_type built environment sample [GENEPIO:0001248] ^{termLabel} \[{termID}\]$ The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246) https://w3id.org/mixs sample|type ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string true MIXS:0000998 sample type
samp_vol_we_dna_ext 1500 milliliter ^{scientific_float}( *- *{scientific_float})? *{text}$ milliliter, gram, milligram, square centimeter Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001) https://w3id.org/mixs nucleic acid sequence source dna|sample|volume|weight ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000111 sample volume or weight for DNA extraction
samp_weather foggy The weather on the sampling day https://w3id.org/mixs day|weather SampWeatherEnum MIXS:0000827 sampling day weather
samp_well_name Name of the well (e.g. BXA1123) where sample was taken https://w3id.org/mixs sample string true MIXS:0000296 sample well name
saturates_pc ^{name};{float} {unit}$ percent Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) https://w3id.org/mixs ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000131 saturates wt%
sc_lysis_approach enzymatic Method used to free DNA from interior of the cell(s) or particle(s) https://w3id.org/mixs sequencing particle|single ScLysisApproachEnum MIXS:0000076 single cell or viral particle lysis approach
sc_lysis_method ambion single cell lysis kit kit, protocol name Name of the kit or standard protocol used for cell(s) or particle(s) lysis https://w3id.org/mixs sequencing kit|particle|protocol|single MIXS:0000054 {text} single cell or viral particle lysis kit protocol
season autumn [NCIT:C94733] autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], winter [NCIT:C94730] autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$|would require ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\]$ The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) https://w3id.org/mixs season ^\S+.*\S+ \[[a-zA-Z]{2,}:[a-zA-Z0-9]+\]$ string MIXS:0000829 {termLabel} [{termID}] season
season_environment rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment https://w3id.org/mixs environment|season true string MIXS:0001068 seasonal environment
season_humidity 0.25 ^{scientific_float}( *- *{scientific_float})? *{text}$ percent or float? Average humidity of the region throughout the growing season https://w3id.org/mixs humidity|mean|season ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float MIXS:0001148 mean seasonal humidity
season_precpt 75 millimeters ^{scientific_float}( *- *{scientific_float})? *{text}$ millimeter The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps https://w3id.org/mixs mean|season ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000645 mean seasonal precipitation
season_temp 18 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Mean seasonal temperature https://w3id.org/mixs mean|season|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000643 mean seasonal temperature
season_use Winter The seasons the space is occupied https://w3id.org/mixs season|use SeasonUseEnum MIXS:0000830 seasonal use
secondary_treatment secondary treatment type The process for substantially degrading the biological content of the sewage https://w3id.org/mixs secondary|treatment MIXS:0000351 {text} secondary treatment
sediment_type biogenous Information about the sediment type based on major constituents https://w3id.org/mixs sediment|type SedimentTypeEnum MIXS:0001078 sediment type
seq_meth 454 Genome Sequencer FLX [OBI:0000702] ^{text}|({termLabel} \[{termID}\])$ Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103) https://w3id.org/mixs sequencing method ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ string true MIXS:0000050 sequencing method
seq_quality_check none none or manually edited Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA https://w3id.org/mixs sequencing quality SeqQualityCheckEnum MIXS:0000051 sequence quality check
sequencing_kit NextSeq 500/550 High Output Kit v2.5 (75 Cycles) name of sequencing kit used Pre-filled, ready-to-use reagent cartridges. Used to produce improved chemistry, cluster density and read length as well as improve quality (Q) scores. Reagent components are encoded to interact with the sequencing system to validate compatibility with user-defined applications. Indicate name of the sequencing kit https://w3id.org/mixs kit MIXS:0001155 {text} sequencing kit
sequencing_location University of Maryland Genomics Resource Center The location the sequencing run was performed. Indicate the name of the lab or core facility where samples were sequenced https://w3id.org/mixs location string MIXS:0001156 sequencing location
serovar_or_serotype Escherichia coli strain O157:H7 [NCIT:C86883] ^({termLabel} \[{termID}\])|{integer}$ A characterization of a cell or microorganism based on the antigenic properties of the molecules on its surface. Indicate the name of a serovar or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy https://w3id.org/mixs true ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ string MIXS:0001157 serovar or serotype
sewage_type sewage type name Type of wastewater treatment plant as municipial or industrial https://w3id.org/mixs type MIXS:0000215 {text} sewage type
sexual_act partner sex;frequency Current sexual partner and frequency of sex https://w3id.org/mixs MIXS:0000285 {text} sexual activity
shad_dev_water_mold no presence of mold visible Signs of the presence of mold or mildew on the shading device https://w3id.org/mixs device MoldVisibilityEnum MIXS:0000834 shading device signs of water/mold
shading_device_cond new The physical condition of the shading device at the time of sampling https://w3id.org/mixs condition|device DamagedRupturedEnum MIXS:0000831 shading device condition
shading_device_loc exterior The location of the shading device in relation to the built structure https://w3id.org/mixs device|location ShadingDeviceLocEnum MIXS:0000832 shading device location
shading_device_mat material name The material the shading device is composed of https://w3id.org/mixs device|material MIXS:0000245 {text} shading device material
shading_device_type slatted aluminum The type of shading device https://w3id.org/mixs device|type ShadingDeviceTypeEnum MIXS:0000835 shading device type
sieving design name and/or size;amount Collection design of pooled samples and/or sieve size and amount of sample sieved https://w3id.org/mixs MIXS:0000322 {text};{float} {unit} sieving
silicate 0.05 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter Concentration of silicate https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000184 silicate
sim_search_meth HMMER3;3.1b2;hmmsearch, cutoff of 50 on score ^{software};{version};{parameters}$ Tool used to compare ORFs with database, along with version and cutoffs used https://w3id.org/mixs sequencing method ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000063 similarity search method
size_frac 0-0.22 micrometer filter size value range Filtering pore size used in sample preparation https://w3id.org/mixs nucleic acid sequence source fraction|size MIXS:0000017 {float}-{float} {unit} size fraction selected
size_frac_low 0.2 micrometer ^{scientific_float}( *- *{scientific_float})? *{text}$ micrometer Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample https://w3id.org/mixs lower ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000735 size-fraction lower threshold
size_frac_up 20 micrometer ^{scientific_float}( *- *{scientific_float})? *{text}$ micrometer Mesh or pore size of the device used to retain the sample. Materials smaller than the size threshold are excluded from the sample https://w3id.org/mixs upper ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000736 size-fraction upper threshold
slope_aspect ^{scientific_float}( *- *{scientific_float})? *{text}$ degree The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration https://w3id.org/mixs slope ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000647 slope aspect
slope_gradient ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer https://w3id.org/mixs slope ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000646 slope gradient
sludge_retent_time ^{scientific_float}( *- *{scientific_float})? *{text}$ hours The time activated sludge remains in reactor https://w3id.org/mixs time ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000669 sludge retention time
smoker yes Specification of smoking status https://w3id.org/mixs boolean MIXS:0000262 smoker
sodium 10.5 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Sodium concentration in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000428 sodium
soil_conductivity 10 milliSiemens per centimeter ^{scientific_float}( *- *{scientific_float})? *{text}$ milliSiemens per centimeter https://w3id.org/mixs soil ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001158 soil conductivity
soil_cover bare soil [ENVO01001616] subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483 Material covering the sampled soil. This field accepts terms under ENVO:00010483, environmental material https://w3id.org/mixs soil MIXS:0001159 bare soil [ENVO:01001616] soil cover
soil_horizon A horizon Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath https://w3id.org/mixs horizon|soil SoilHorizonEnum MIXS:0001082 soil horizon
soil_pH 7.2 https://w3id.org/mixs ph|soil float MIXS:0001160 soil pH
soil_porosity 0.2 percent porosity percentage Porosity of soil or deposited sediment is volume of voids divided by the total volume of sample https://w3id.org/mixs porosity|sediment|soil MIXS:0001162 {percentage} soil sediment porosity
soil_temp 25 degrees Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature of soil at the time of sampling https://w3id.org/mixs soil|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001163 soil temperature
soil_texture ^{scientific_float}( *- *{scientific_float})? *{text}$ The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional https://w3id.org/mixs soil|texture ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000335 soil texture
soil_texture_class silty clay loam One of the 12 soil texture classes use to describe soil texture based on the relative proportion of different grain sizes of mineral particles [sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil https://w3id.org/mixs classification|soil|texture SoilTextureClassEnum MIXS:0001164 soil texture classification
soil_texture_meth https://uwlab.soils.wisc.edu/wp-content/uploads/sites/17/2015/09/particle_size.pdf ^{PMID}|{DOI}|{URL}$ Reference or method used in determining soil texture https://w3id.org/mixs method|soil|texture ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000336 soil texture method
soil_type plinthosol [ENVO:00002250] ENVO:00001998 Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes https://w3id.org/mixs soil|type MIXS:0000332 soil type
soil_type_meth https://www.lrh.usace.army.mil/Portals/38/docs/PR/BluestoneSFEIS/Appendix%20K-Soil%20Descriptions.pdf ^{PMID}|{DOI}|{URL}$ Reference or method used in determining soil series name or other lower-level classification https://w3id.org/mixs method|soil|type ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000334 soil type method
solar_irradiance 1.36 kilowatts per square meter per day ^{scientific_float}( *- *{scientific_float})? *{text}$ kilowatts per square meter per day, ergs per square centimeter per second The amount of solar energy that arrives at a specific area of a surface during a specific time interval https://w3id.org/mixs true ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000112 solar irradiance
soluble_inorg_mat soluble inorganic material name;measurement value gram, microgram, mole per liter, gram per liter, parts per million Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc https://w3id.org/mixs inorganic|material|soluble true MIXS:0000672 {text};{float} {unit} soluble inorganic material
soluble_org_mat soluble organic material name;measurement value gram, microgram, mole per liter, gram per liter, parts per million Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc https://w3id.org/mixs material|organic|soluble true MIXS:0000673 {text};{float} {unit} soluble organic material
soluble_react_phosp 0.1 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of soluble reactive phosphorus https://w3id.org/mixs phosphorus|soluble ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000738 soluble reactive phosphorus
sop http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/ reference to SOP Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences https://w3id.org/mixs sequencing procedures true MIXS:0000090 {PMID}|{DOI}|{URL} relevant standard operating procedures
sort_tech optical manipulation Method used to sort/isolate cells or particles of interest https://w3id.org/mixs sequencing SortTechEnum MIXS:0000075 sorting technology
source_mat_id MPI012345 for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2) https://w3id.org/mixs nucleic acid sequence source identifier|material|source true MIXS:0000026 {text} source material identifiers
source_uvig viral fraction metagenome (virome) enumeration Type of dataset from which the UViG was obtained https://w3id.org/mixs nucleic acid sequence source source MIXS:0000035 [metagenome (not viral targeted)|viral fraction metagenome (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate microbial genome|other] source of UViGs
space_typ_state typically occupied Customary or normal state of the space https://w3id.org/mixs SpaceTypStateEnum true MIXS:0000770 space typical state
spec_intended_cons senior as food consumer [FOODON:03510254] ^{termLabel} \[{termID}\]$ Food consumer type, human or animal, for which the food product is produced and marketed. This field accepts terms listed under food consumer group (http://purl.obolibrary.org/obo/FOODON_03510136) https://w3id.org/mixs consumer true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ string MIXS:0001234 specific intended consumer
special_diet other:vegan enumeration Specification of special diet; can include multiple special diets https://w3id.org/mixs diet true MIXS:0000905 [low carb|reduced calorie|vegetarian|other(to be specified)] special diet
specific construction The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents https://w3id.org/mixs SpecificEnum MIXS:0000836 specifications
specific_host Homo sapiens and/or 9606 host scientific name, taxonomy ID Report the host's taxonomic name and/or NCBI taxonomy ID https://w3id.org/mixs nucleic acid sequence source host|host. MIXS:0000029 {text}|{NCBI taxid} host scientific name
specific_humidity 15 per kilogram of air ^{scientific_float}( *- *{scientific_float})? *{text}$ gram of air, kilogram of air The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound https://w3id.org/mixs humidity ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000214 specific humidity
spikein_AMR wild type [ARO:3004432] measurement value ARO:3004299 Qualitative description of a microbial response to antimicrobial agents. Bacteria may be susceptible or resistant to a broad range of antibiotic drugs or drug classes, with several intermediate states or phases. This field accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299) https://w3id.org/mixs antimicrobial|spike true MIXS:0001235 {float} {unit};{termLabel} [{termID}] antimicrobial phenotype of spike-in bacteria
spikein_antibiotic Tetracycline at 5 mg/ml drug name; concentration Antimicrobials used in research study to assess effects of exposure on microbiome of a specific site. Please list antimicrobial, common name and/or class and concentration used for spike-in https://w3id.org/mixs spike true MIXS:0001171 {text} {integer} spike-in with antibiotics
spikein_count total prokaryotes;3.5e7 colony forming units per milliliter;qPCR organism name;measurement value;enumeration colony forming units per milliliter; colony forming units per gram of dry weight Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR) https://w3id.org/mixs count|organism|spike MIXS:0001335 {text};{float} {unit};[ATP|MPN|qPCR|other] spike-in organism count
spikein_growth_med LB broth [MCO:0000036] ^{text}|({termLabel} \[{termID}\])$ A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). A growth medium is a culture medium which has the disposition to encourage growth of particular bacteria to the exclusion of others in the same growth environment. In this case, list the culture medium used to propagate the spike-in bacteria during preparation of spike-in inoculum. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the spike in growth media https://w3id.org/mixs growth|spike true ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ string MIXS:0001169 spike-in growth medium
spikein_metal Cd at 20 ppm heavy metal name or chemical symbol; concentration Heavy metals used in research study to assess effects of exposure on microbiome of a specific site. Please list heavy metals and concentration used for spike-in https://w3id.org/mixs heavy|spike true MIXS:0001172 {text} {integer} spike-in with heavy metals
spikein_org Listeria monocytogenes [NCIT:C86502]|28901 ^({termLabel} \[{termID}\])|{integer}$ Taxonomic information about the spike-in organism(s). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes https://w3id.org/mixs organism|spike true ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ string MIXS:0001167 spike in organism
spikein_serovar Escherichia coli strain O157:H7 [NCIT:C86883]|83334 NCIT:C14250 or antigenic formula or serovar name Taxonomic information about the spike-in organism(s) at the serovar or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes https://w3id.org/mixs spike true MIXS:0001168 {termLabel} [{termID}]|{integer} spike-in bacterial serovar or serotype
spikein_strain 169963 NCIT:C14250 or NCBI taxid or text Taxonomic information about the spike-in organism(s) at the strain level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes https://w3id.org/mixs microbial|spike true MIXS:0001170 {termLabel} [{termID}]|{integer} spike-in microbial strain
sr_dep_env Marine "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs environment|source SrDepEnvEnum MIXS:0000996 source rock depositional environment
sr_geol_age Silurian "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs age|source GeolAgeEnum MIXS:0000997 source rock geological age
sr_kerog_type Type IV "Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs source|type SrKerogTypeEnum MIXS:0000994 source rock kerogen type
sr_lithology Coal "Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If ""other"" is specified, please propose entry in ""additional info"" field" https://w3id.org/mixs lithology|source SrLithologyEnum MIXS:0000995 source rock lithology
standing_water_regm standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens https://w3id.org/mixs regimen|water true string MIXS:0001069 standing water regimen
ster_meth_samp_room ultraviolet radiation [ENVO:21001216]|infrared radiation [ENVO:21001214] ENVO:01001026 The method used to sterilize the sampling room. This field accepts terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026). If the proper descriptor is not listed, please use text to describe the sampling room sterilization method. Multiple terms can be separated by pipes https://w3id.org/mixs method|room true MIXS:0001259 {text}|{termLabel} [{termID}] sampling room sterilization method
store_cond -20 degree Celsius freezer;P2Y10D storage condition type;duration Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other) https://w3id.org/mixs condition|storage MIXS:0000327 {text};{period} storage conditions
study_complt_stat no;non-compliance YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow up (4)other-specify Specification of study completion status, if no the reason should be specified https://w3id.org/mixs status MIXS:0000898 {boolean};[adverse event|non-compliance|lost to follow up|other-specify] study completion status
study_design in vitro design [OBI:0001285] OBI:0500000 A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. This field accepts terms under study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor is not listed please use text to describe the study design. Multiple terms can be separated by pipes https://w3id.org/mixs true MIXS:0001236 {text}|{termLabel} [{termID}] study design
study_inc_dur PT24H ^{duration}$ hours or days Sample incubation duration if unpublished or unvalidated method is used. Indicate the timepoint written in ISO 8601 format https://w3id.org/mixs duration|incubation|period ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0001237 study incubation duration
study_inc_temp 37 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Sample incubation temperature if unpublished or unvalidated method is used https://w3id.org/mixs incubation|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001238 study incubation temperature
study_timecourse 2 days post inoculation ^{scientific_float}( *- *{scientific_float})? *{text}$ dpi For time-course research studies involving samples of the food commodity, indicate the total duration of the time-course study https://w3id.org/mixs duration|period|time ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001239 time-course duration
study_tmnt Factor A|spike-in|levels high, medium, low MCO:0000866 A process in which the act is intended to modify or alter some other material entity. From the study design, each treatment is comprised of one level of one or multiple factors. This field accepts terms listed under treatment (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not listed please use text to describe the study treatment. Multiple terms can be separated by one or more pipes https://w3id.org/mixs treatment true MIXS:0001240 {text}|{termLabel} [{termID}] study treatment
subspecf_gen_lin serovar:Newport Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123 https://w3id.org/mixs nucleic acid sequence source lineage MIXS:0000020 {rank name}:{text} subspecific genetic lineage
substructure_type basement The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level https://w3id.org/mixs type true SubstructureTypeEnum MIXS:0000767 substructure type
sulfate 5 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of sulfate in the sample https://w3id.org/mixs sulfate ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000423 sulfate
sulfate_fw ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Original sulfate concentration in the hydrocarbon resource https://w3id.org/mixs sulfate|water ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000407 sulfate in formation water
sulfide 2 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Concentration of sulfide in the sample https://w3id.org/mixs sulfide ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000424 sulfide
surf_air_cont radon Contaminant identified on surface https://w3id.org/mixs true SurfAirContEnum true MIXS:0000759 surface-air contaminant
surf_humidity 0.1 ^{scientific_float}( *- *{scientific_float})? *{text}$ percentage percent or float? Surfaces: water activity as a function of air and material moisture https://w3id.org/mixs humidity|surface ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ float true MIXS:0000123 surface humidity
surf_material wood Surface materials at the point of sampling https://w3id.org/mixs material|surface SurfMaterialEnum MIXS:0000758 surface material
surf_moisture 0.01 gram per square meter ^{scientific_float}( *- *{scientific_float})? *{text}$ parts per million, gram per cubic meter, gram per square meter Water held on a surface https://w3id.org/mixs moisture|surface ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000128 surface moisture
surf_moisture_ph 7 ph measurement of surface https://w3id.org/mixs moisture|ph|surface float true MIXS:0000760 surface moisture pH
surf_temp 15 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature of the surface at the time of sampling https://w3id.org/mixs surface|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000125 surface temperature
suspend_part_matter 0.5 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Concentration of suspended particulate matter https://w3id.org/mixs particle|particulate|suspended ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000741 suspended particulate matter
suspend_solids suspended solid name;measurement value gram, microgram, milligram per liter, mole per liter, gram per liter, part per million Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances https://w3id.org/mixs solids|suspended true MIXS:0000150 {text};{float} {unit} suspended solids
sym_life_cycle_type complex life cycle type of life cycle of the symbiotic organism (host of the samples) Type of life cycle of the symbiotic host species (the thing being sampled). Simple life cycles occur within a single host, complex ones within multiple different hosts over the course of their normal life cycle https://w3id.org/mixs host|host.|life|organism|symbiosis|type SymLifeCycleTypeEnum true MIXS:0001300 symbiotic host organism life cycle type
symbiont_host_role intermediate Role of the host in the life cycle of the symbiotic organism https://w3id.org/mixs host|host.|symbiosis SymbiontHostRoleEnum true MIXS:0001303 host of the symbiont role
tan ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number) https://w3id.org/mixs number|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000120 total acid number
target_gene 16S rRNA, 18S rRNA, nif, amoA, rpo Targeted gene or locus name for marker gene studies https://w3id.org/mixs sequencing target string MIXS:0000044 target gene
target_subfragment V6, V9, ITS Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA https://w3id.org/mixs sequencing target string MIXS:0000045 target subfragment
tax_class vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, default parameters) Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes https://w3id.org/mixs sequencing classification|taxon string MIXS:0000064 taxonomic classification
tax_ident other The phylogenetic marker(s) used to assign an organism name to the SAG or MAG https://w3id.org/mixs sequencing identifier|marker|taxon TaxIdentEnum MIXS:0000053 taxonomic identity marker
temp 25 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius Temperature of the sample at the time of sampling https://w3id.org/mixs environment temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000113 temperature
temp_out 5 degree Celsius ^{scientific_float}( *- *{scientific_float})? *{text}$ degree Celsius The recorded temperature value at sampling time outside https://w3id.org/mixs house|temperature ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000197 temperature outside house
tertiary_treatment tertiary treatment type The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment https://w3id.org/mixs treatment MIXS:0000352 {text} tertiary treatment
tidal_stage high tide Stage of tide https://w3id.org/mixs TidalStageEnum MIXS:0000750 tidal stage
tillage chisel Note method(s) used for tilling https://w3id.org/mixs history true TillageEnum MIXS:0001081 history/tillage
time_last_toothbrush PT2H45M ^{duration}$ P2H45M does not match ^P(?!$)(\\d+Y)?(\\d+M)?(\\d+W)?(\\d+D)?(T(?=\\d+[HMS])(\\d+H)?(\\d+M)?(\\d+S)?)?$|problematic ISO 8601 period validation Specification of the time since last toothbrushing https://w3id.org/mixs time ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0000924 time since last toothbrushing
time_since_last_wash P1D ^{duration}$ Specification of the time since last wash https://w3id.org/mixs time ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0000943 time since last wash
timepoint PT24H ^{duration}$ hours or days Time point at which a sample or observation is made or taken from a biomaterial as measured from some reference point. Indicate the timepoint written in ISO 8601 format https://w3id.org/mixs time ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ string MIXS:0001173 timepoint
tiss_cult_growth_med https://link.springer.com/content/pdf/10.1007/BF02796489.pdf ^{PMID}|{DOI}|{URL}|{text}$ Description of plant tissue culture growth media used https://w3id.org/mixs culture|growth ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0001070 tissue culture growth media
toluene ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of toluene in the sample https://w3id.org/mixs ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000154 toluene
tot_carb ^{scientific_float}( *- *{scientific_float})? *{text}$ Total carbon content https://w3id.org/mixs carbon|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000525 total carbon
tot_depth_water_col 500 meter ^{scientific_float}( *- *{scientific_float})? *{text}$ meter Measurement of total depth of water column https://w3id.org/mixs depth|total|water ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000634 total depth of water column
tot_diss_nitro 40 microgram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen https://w3id.org/mixs dissolved|nitrogen|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000744 total dissolved nitrogen
tot_inorg_nitro 40 microgram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter Total inorganic nitrogen content https://w3id.org/mixs inorganic|nitrogen|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000745 total inorganic nitrogen
tot_iron ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, milligram per kilogram Concentration of total iron in the sample https://w3id.org/mixs total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000105 total iron
tot_nitro 50 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, micromole per liter, milligram per liter Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen https://w3id.org/mixs concentration|nitrogen|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000102 total nitrogen concentration
tot_nitro_cont_meth https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/0471142913.fab0102s00 ^{PMID}|{DOI}|{URL}$ Reference or method used in determining the total nitrogen https://w3id.org/mixs content|method|nitrogen|total ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000338 total nitrogen content method
tot_nitro_content 35 milligrams Nitrogen per kilogram of soil ^{scientific_float}( *- *{scientific_float})? *{text}$ Total nitrogen content of the sample https://w3id.org/mixs content|nitrogen|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000530 total nitrogen content
tot_org_c_meth https://www.epa.gov/sites/production/files/2015-12/documents/9060a.pdf ^{PMID}|{DOI}|{URL}$ Reference or method used in determining total organic carbon https://w3id.org/mixs carbon|method|organic|total ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ string MIXS:0000337 total organic carbon method
tot_org_carb 0.02 ^{scientific_float}( *- *{scientific_float})? *{text}$ gram Carbon per kilogram sample material Total organic carbon content https://w3id.org/mixs carbon|organic|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000533 total organic carbon
tot_part_carb 35 micromole per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, micromole per liter Total particulate carbon content https://w3id.org/mixs carbon|particle|particulate|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000747 total particulate carbon
tot_phosp 0.03 milligram per liter ^{scientific_float}( *- *{scientific_float})? *{text}$ micromole per liter, milligram per liter, parts per million Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus https://w3id.org/mixs phosphorus|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000117 total phosphorus
tot_phosphate ^{scientific_float}( *- *{scientific_float})? *{text}$ microgram per liter, micromole per liter Total amount or concentration of phosphate https://w3id.org/mixs phosphate|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000689 total phosphate
tot_sulfur ^{scientific_float}( *- *{scientific_float})? *{text}$ milligram per liter, parts per million Concentration of total sulfur in the sample https://w3id.org/mixs sulfur|total ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string true MIXS:0000419 total sulfur
train_line red The subway line name https://w3id.org/mixs train TrainLineEnum MIXS:0000837 train line
train_stat_loc forest hills The train station collection location https://w3id.org/mixs location|train TrainStatLocEnum MIXS:0000838 train station collection location
train_stop_loc end The train stop collection location https://w3id.org/mixs location|stop|train TrainStopLocEnum MIXS:0000839 train stop collection location
travel_out_six_month country name Specification of the countries travelled in the last six months; can include multiple travels https://w3id.org/mixs months true MIXS:0000268 {text} travel outside the country in last six months
trna_ext_software infernal;v2;default parameters ^{software};{version};{parameters}$ Tools used for tRNA identification https://w3id.org/mixs sequencing software ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ string MIXS:0000068 tRNA extraction software
trnas 18 value from 0-21 The total number of tRNAs identified from the SAG or MAG https://w3id.org/mixs sequencing number MIXS:0000067 {integer} number of standard tRNAs extracted