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mkdocs.yml
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mkdocs.yml
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site_name: Genotype Imputation
site_author: Genomics Aotearoa
site_dir: public
site_url: "https://genomicsaotearoa.github.io/Imputation-workshop/"
#Repository information
repo_name: GenomicsAotearoa/Imputation-workshop
repo_url: https://github.com/GenomicsAotearoa/Imputation-workshop
theme:
name: material
logo: ../theme_figures/nesi_ga.png
favicon: ../theme_figures/nesi_ga.png
# 404 page
static_templates:
- 404.html
palette:
# Palette toggle for automatic mode
- media: "(prefers-color-scheme)"
toggle:
icon: material/brightness-auto
name: Switch to light mode
primary: custom
# Palette toggle for light mode
- media: "(prefers-color-scheme: light)"
scheme: default
primary: custom
toggle:
icon: material/brightness-7
name: Switch to dark mode
# Palette toggle for dark mode
- media: "(prefers-color-scheme: dark)"
scheme: slate
toggle:
icon: material/brightness-4
name: Switch to system preference
primary: custom
features:
- navigation.tracking
- navigation.sections
- navigation.expand
- navigation.top
- navigation.footer
- content.code.copy
- content.code.annotate
# Necessary for search to work properly
include_search_page: false
search_index_only: true
# Default values, taken from mkdocs_theme.yml
language: en
font:
text: Mukta
code: Roboto Mono
markdown_extensions:
- abbr
- admonition
- attr_list
- def_list
- footnotes
- meta
- md_in_html
- toc:
permalink: true
- pymdownx.arithmatex:
generic: true
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.details
- pymdownx.emoji:
emoji_generator: !!python/name:materialx.emoji.to_svg
emoji_index: !!python/name:materialx.emoji.twemoji
- pymdownx.highlight:
anchor_linenums: true
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink:
repo_url_shorthand: true
user: squidfunk
repo: mkdocs-material
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:pymdownx.superfences.fence_code_format
- pymdownx.tabbed:
alternate_style: true
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
- pymdownx.snippets
- pymdownx.pathconverter
extra_javascript:
- javascripts/mathjax.js
- https://polyfill.io/v3/polyfill.min.js?features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
plugins:
- glightbox:
effect: zoom
zoomable: true
- search:
lang: en
- minify:
minify_html: true
minify_js: true
minify_css: true
copyright : Imputation workshop material is licensed under a <a rel="noopener" target="_blank" href="https://www.apache.org/licenses/LICENSE-2.0">APACHE LICENSE, VERSION 2.0</a>
extra_css:
- stylesheets/extra.css
extra_javascript:
- javascripts/mathjax.js
- https://polyfill.io/v3/polyfill.min.js?features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js