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<div id="forecasting-webpage" class="section level1">
<h1>Forecasting Webpage</h1>
<p>This is a webpage for the Fish Forecasting lectures and labs. To use is as a template for a specific course, see notes below on how to copy into another repository.</p>
<div id="lecture-slides" class="section level2">
<h2>Lecture slides</h2>
<p>This is based on Mark’s slide templates (present) for presentations written in R Markdown using <strong><a href="https://github.com/yihui/xaringan">xaringan</a></strong>, an R package for creating slideshows with <strong><a href="http://remarkjs.com">remark.js</a></strong>.</p>
<p>Put external (meaning not produced by R within the Rmarkdown file) figures and pictures in directory ‘figs’.</p>
<p>The internally made figures will be put automatically in ‘template_files/figure-html’.</p>
<p>See template.Rmd for examples of formatting slides.</p>
<p>Click ‘knit’ in RStudio to create the html file. To print to pdf, use Chrome.</p>
</div>
<div id="using-this-as-a-template-for-a-course-website" class="section level2">
<h2>Using this as a template for a course website</h2>
<p>If you use GitHub Desktop, clone the repository or fork and clone your fork.</p>
<p>This website was built using RStudio ‘Build Website’ which issues the code</p>
<pre><code>rmarkdown::render_site(encoding = 'UTF-8')</code></pre>
<p>This makes all the html files. You only need to change the Rmd files. For the navigation bar at the top edit <code>_site.yml</code>. To change style, edit <code>style.css</code> and <code>my-theme.css</code>. Once the website it built, push to GitHub. If you have enabled GitHub Pages then you’ll see the website.</p>
</div>
<div id="git-instructions" class="section level2">
<h2>Git instructions</h2>
<p>To clone this for another course. Do this once.</p>
<ol style="list-style-type: decimal">
<li>Create the repo New-Repo (or whatever you want to name) on GitHub</li>
<li>Open terminal and run these commands which will</li>
</ol>
<ul>
<li>copy the ‘master repo’ to a new repo for your course</li>
<li>set the remote, called origin’ for your new repo</li>
<li>add a second remote called ‘upstream’ that points to the ‘master repo’. You need this to push changes from upstream into New-Repo later</li>
<li>push the local master branch to the remote called origin</li>
</ul>
<pre><code>git clone https://github.com/Fish-Forecast/Fish-Forecast-Webpage New-Repo
cd New-Repo
git remote set-url origin https://github.com/Fish-Forecast/New-Repo
git remote add upstream https://github.com/Fish-Forecast/Fish-Forecast-Webpage
git push origin master</code></pre>
</div>
<div id="updating-new-repo-when-fish-forecast-webpage-changes" class="section level2">
<h2>Updating New-Repo when Fish-Forecast-Webpage changes</h2>
<p>If you make changes in the master repo and want to push to the copy run this code. This assumes the changes in master are on github so pushed from local.</p>
<pre><code># make sure at New-Repo
cd New-Repo
git pull upstream master</code></pre>
<p>Updating just one file, file1, from upstream. Something like this might work.</p>
<pre><code>cd New-Repo
git fetch upstream
git checkout -m upstream/master -- file1
git add file1
git commit -m "my message"
git push origin master</code></pre>
</div>
<div id="merge-changes-from-new-repo-back-into-the-original" class="section level2">
<h2>Merge changes from New-Repo back into the original</h2>
<p>If you make changes in New-Repo and want to merge into Fish-Forecast-Webpage… Oh dear, that’s probably a recipe for a slew of merge conflicts but here’s the code.</p>
<p>Push everything into upstream. Make sure that is what you really want to do.</p>
<pre><code># make sure at New-Repo
cd New-Repo
git push upstream master</code></pre>
<p>Or just a file or two. Use <code>git status</code> to double-check what is going to be pushed.</p>
<pre><code>cd New-Repo
git status
git add file1
git commit file1 -m "my message"
git status
git push upstream</code></pre>
</div>
</div>
</div>
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