add cluster selection example

FertigLab · Jul 22, 2024 · 394efac · 394efac
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diff --git a/R/plot_fxns.R b/R/plot_fxns.R
@@ -766,6 +766,8 @@ cor_scatter <- function(dom, tf, rec, remove_rec_dropout = TRUE, ...) {
 #' cols = c("red", "orange", "green")
 #' names(cols) = dom_clusters(pbmc_dom_built_tiny)
 #' circos_ligand_receptor(pbmc_dom_built_tiny, receptor = "CXCR3", cell_colors = cols)
+#' # plot a subset of clusters
+#' circos_ligand_receptor(pbmc_dom_built_tiny, receptor = "CXCR3", cell_idents = c("CD14_monocyte", "CD8_T_cell"))
 #' 
 circos_ligand_receptor <- function(
     dom, receptor, ligand_expression_threshold = 0.01, cell_idents = NULL,

diff --git a/man/circos_ligand_receptor.Rd b/man/circos_ligand_receptor.Rd