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Not using 10um stpt for the mouse ccf #1335

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PolarBean opened this issue Jun 1, 2023 · 0 comments
Open

Not using 10um stpt for the mouse ccf #1335

PolarBean opened this issue Jun 1, 2023 · 0 comments
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@PolarBean
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I noticed in the info file siibra uses for the mouse stpt volume it doesnt include the 10um volume.
https://neuroglancer.humanbrainproject.eu/precomputed/AMBA/templates/v3/stpt/info
The 10um stpt alongside the 10um annotations are much smoother and would look cool in siibra.

The 10um template can be found here: https://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/average_template/
and the 10um annotations (for 2017) can be found here: https://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2017/
alongiside 2015: https://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2015/
@xgui3783 xgui3783 mentioned this issue Nov 5, 2024
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AhmetNSimsek added a commit to FZJ-INM1-BDA/siibra-configurations that referenced this issue Nov 6, 2024
@AhmetNSimsek
Add citation to allen mouse template
d990358 
Note: the publication is the main publication but the existing data is older. See FZJ-INM1-BDA/siibra-explorer#1335
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@xgui3783 @PolarBean