diff --git a/docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv b/docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv index bee8903..0b40aa3 100644 --- a/docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv +++ b/docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv @@ -1,1459 +1,2726 @@ domain_id,institution_id,driving_source_id,driving_experiment_id,driving_variant_label,source_id,version_realization,frequency,variable_id,version,filename -PARIS-3,CSIRO,ERA5,evaluation,r1i1p1f1,CCAM-v2401-SN,v1-fpsurbrcc-s0r1,fx,sftlf,v20231206,sftlf_PARIS-3_ERA5_evaluation_r1i1p1f1_CSIRO_CCAM-v2401-SN_v1-fpsurbrcc-s0r1.nc -PARIS-3,CSIRO,ERA5,evaluation,r1i1p1f1,CCAM-v2401-SN,v1-fpsurbrcc-s0r1,fx,orog,v20231206,orog_PARIS-3_ERA5_evaluation_r1i1p1f1_CSIRO_CCAM-v2401-SN_v1-fpsurbrcc-s0r1.nc -PARIS-3,CSIRO,ERA5,evaluation,r1i1p1f1,CCAM-v2401-SN,v1-fpsurbrcc-s0r1,fx,mrsofc,v20231206,mrsofc_PARIS-3_ERA5_evaluation_r1i1p1f1_CSIRO_CCAM-v2401-SN_v1-fpsurbrcc-s0r1.nc 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fullpath="${file}" + + # Fixes + filename=${filename//ICTP-RegCM5/ICTP_RegCM5} + filename=${filename//CLMcom-CMCC-ICONCLM2-6-6/CLMcom-CMCC_ICONCLM2-6-6} + filename=${filename//r1.nc/r1_fx.nc} + filename=${filename//r3.nc/r3_fx.nc} + + filename=${filename//.nc/} + IFS="_" read -r variable_id domain_id driving_source_id driving_experiment_id driving_variant_label institution_id source_id version_realization frequency dates <<< "$filename" + + # Get the file modification time and format it as vYYYYMMDD + mod_time=$(stat -c %y "${fullpath}" | cut -d' ' -f1 | tr -d '-') + formatted_version="v${mod_time}" + + target_dir="$OUTPUT_DIR/CORDEX/CMIP6/FPS-URB-RCC/${domain_id}/${institution_id}/${driving_source_id}/${driving_experiment_id}/${driving_variant_label}/${source_id}/${version_realization}/${frequency}/${variable_id}/${formatted_version}" + + mkdir -p "$target_dir" + ln -s "$fullpath" "$target_dir/${filename}.nc" +done + +echo "Files have been organized into the CORDEX DRS hierarchy." + diff --git a/show_variables.py b/show_variables.py index f5abd7a..87edeea 100644 --- a/show_variables.py +++ b/show_variables.py @@ -26,7 +26,7 @@ def list_all_files(base_path, has_version = True): """ all_files = [] - for dirpath, _, filenames in os.walk(base_path): + for dirpath, _, filenames in os.walk(base_path):#, followlinks = True): for file in filenames: full_path = os.path.join(dirpath, file) if 'delete' in full_path: @@ -34,14 +34,7 @@ def list_all_files(base_path, has_version = True): if not '.nc' in full_path: continue components = full_path.split(os.sep) - if has_version: - if not len(components) == 15: - continue - - else: - if not len(components) == 14: - continue - all_files.append(components[4:]) + all_files.append(components[7:]) facets = ['domain_id', 'institution_id', 'driving_source_id', 'driving_experiment_id', 'driving_variant_label', 'source_id', 'version_realization', 'frequency', 'variable_id', 'version', 'filename'] @@ -51,6 +44,7 @@ def list_all_files(base_path, has_version = True): return df base_path = "/work/bg1369/FPS-URB-RCC/PARIS-3" +base_path = "/work/bg1369/b382580_jfernandez/CORDEX/CMIP6/FPS-URB-RCC/PARIS-3" df = list_all_files(base_path, has_version = version) df.to_csv('docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv', index = False) @@ -61,7 +55,7 @@ def list_all_files(base_path, has_version = True): data = pd.read_csv('docs/CORDEX_FPSURBRCC_DKRZ_all_variables.csv', usecols=['variable_id', 'frequency', 'source_id', 'version_realization', 'institution_id']) data['source_institution'] = data['source_id'] + '_' + data['version_realization'].str.replace('fpsurbrcc-s0', '') + ' (' + data['institution_id'] + ')' data.drop(columns = ['source_id', 'institution_id', 'version_realization'], inplace = True) -# Drop minthly data (for the sake of brevity) +# Drop monthly data (for the sake of brevity) data.query('frequency != "mon"', inplace = True) # Avoid showing different subdaily frequencies #data['frequency'] = data['frequency'].replace('.hr', 'xhr', regex = True) @@ -70,7 +64,7 @@ def list_all_files(base_path, has_version = True): matrix = data.pivot_table(index='source_institution', columns=['frequency', 'variable_id'], aggfunc='size', fill_value=0) matrix = matrix.replace(0, np.nan) # Plot as heatmap (make sure to show all ticks and labels) -plt.figure(figsize=(30,23)) +plt.figure(figsize=(40,30)) ax = sns.heatmap(matrix, cmap='YlGnBu_r', annot=False, cbar=False, linewidths=1, linecolor='lightgray') ax.set_xticks(0.5+np.arange(len(matrix.columns))) xticklabels = [f'{v} ({f})' for f,v in matrix.columns]