From f545f2c676e8658959aef4c7112e7e9c97fd330a Mon Sep 17 00:00:00 2001
From: gamorosino <gamorosino@gmail.com>
Date: Thu, 6 Oct 2022 17:07:29 +0200
Subject: [PATCH] minor changes

---
 README.md | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 30a80f9..ecc1554 100644
--- a/README.md
+++ b/README.md
@@ -77,6 +77,8 @@ To avoid using the config file, you can input directly the fullpath of the files
 main.sh <t1.ext> <mask.ext> [<outputdir>]
 ```
 
+If you want to avoid performing the histogram matching on the reference image, you can specify the ```--no-histmatch``` option
+
 #### Script Dependecies
 
 The App needs   `singularity` to run.
@@ -149,4 +151,4 @@ or with local softwares installed:
 run_test_local.sh <download_dir> <output_dir>
 ```
 The script performs the automatic download of the published testset (using [`brainlife CLI`](https://brainlife.io/docs/cli/install/)) of the DBB benchmark (https://doi.org/10.25663/brainlife.pub.24) in the folder ```<download_dir>```. Then, the script predicts the segmentation volume for each subject and stores the results in ```<output_dir>```. 
-Finally, the script computes the dice score between the predicted segmentation and the test set ground-truth, and create the final _csv_ file, named _average_dice_score.csv_ (stored in ```<output_dir>```), reporting the average dice score across the subjects for each label of the segmented volumes.
\ No newline at end of file
+Finally, the script computes the dice score between the predicted segmentation and the test set ground-truth, and create the final _csv_ file, named _average_dice_score.csv_ (stored in ```<output_dir>```), reporting the average dice score across the subjects for each label of the segmented volumes.