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Cannot Find exs.sabdab and exs.scalop Modules #12

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clear1111 opened this issue Nov 21, 2024 · 1 comment
Open

Cannot Find exs.sabdab and exs.scalop Modules #12

clear1111 opened this issue Nov 21, 2024 · 1 comment

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@clear1111
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Hi, great work! I have questions about the code!
I am currently trying to run the script generate_data.py and generate_data_summary.py located in the directory src/abodybuilder3/stages/data/. However, I am encountering an issue where the module exs.sabdab, exs.scalop and some other modules cannot be found. Could you kindly provide some guidance on how to resolve this issue?

@henrykenlay
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henrykenlay commented Nov 22, 2024

Thanks @clear1111! Unfortunately, this code would need some refactoring to work. Data from Sabdab with IMGT numbering can be downloaded from https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabdab. Similarly, a version of SCALOP can be found here https://github.com/oxpig/SCALOP (alternatively, it can be removed from the code as it's not too important).

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