Informal phylofisher related scripts
$ prep_new_db.py -h
usage: prep_new_db.py [-h] -t TAXA_LIST -d MASTER_DB -o OUT_DIR
Prepares files for input for Phylofisher's build_database.py for the creation of a custom database from a subset of taxa in a larger Phylofisher database
optional arguments:
-h, --help show this help message and exit
required arguments:
-t TAXA_LIST, --taxa_list TAXA_LIST
List of taxa as unique IDs to include in new database
-d MASTER_DB, --master_db MASTER_DB
Path to master phylofisher database
-o OUT_DIR, --out_dir OUT_DIR
Path to location where output directory for new
database files will be made
optional arguments:
-z {yes,no}, --compress {yes,no}
Create tar.gz compressed output instead of
uncompressed