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1.10.1 (2023-04-13)

Bug Fixes

  • build: Fix incorrect classifiers and poetry not installing docs correctly. (ca5ec52)

1.10.0 (2023-04-13)

Features

  • db: Add interface to GTDB common DB. (0fc4c46)

1.9.0 (2023-03-03)

Features

  • added run_bash() to execute.py as this can be useful for complicated shell commands (a87761e)

1.8.0 (2023-01-12)

Features

  • moved over BioLib functionality required by the GTDB Species Cluster pipeline; predominately extensions to handle Greengenes-style taxonomy strings (df9e1fe)

1.7.0 (2023-01-07)

Features

  • added execute.py and method for checking accession versions in accession.py. (eb7bd16)

1.6.0 (2022-12-19)

Bug Fixes

  • bootstrap_merge: Fix a bug where taxa labels would be replaced each iteration. (a500f4e)
  • cli: Update bootstrap_merge method to contain CPU argument. (7f53d98)
  • cli: Update bootstrap_merge method to contain CPU argument. (17bd594)

Features

  • bootstrap_merge: Updated to multiprocess on individual trees, not across multiple trees. (2c6046a)
  • convert_accession: Add CLI and method to convert accessions within a tree to canonical form. (504154f)

1.5.0 (2022-12-15)

Bug Fixes

  • typer: Fix minimum version of Typer for rich support. (afa2000)

Features

  • bootstrap_merge: Improve performance of method by 30% using numpy. (cb1b03d)
  • bootstrap_merge: Improve performance of method by 33% using numpy. (c0d0265)
  • bootstrap_merge: Improve performance of method by 33% using numpy. (b24b3dc)

1.4.0 (2022-12-13)

Bug Fixes

  • cli: Add CLI entrypoint to setup.py (5d471bc)

Features

  • bootstrap_merge: Add multiprocessing option. (4aea129)

1.3.0 (2022-12-13)

Features

  • cli: Add CLI and tree manipulation methods. (298954e)
  • cli: Add CLI and tree manipulation methods. (263c2dd)
  • cli: Add CLI and tree manipulation methods. (f7c04a1)

1.2.0 (2022-11-02)

Features

  • change checksum to filemgmt: doc refactoring (25e9042)

1.1.1 (2022-10-21)

Bug Fixes

  • ci: Fix an issue where version was not being applied to PyPI package. (6e4add8)

1.1.0 (2022-10-21)

Features

  • docs/taxon: Add docs and an example of taxon/taxonomy. (a010c48)
  • iTOL: File wrappers for iTOL. (43bd118)
  • iTOL: File wrappers for iTOL. (92740b4)
  • Tools implementation: Add first set of tools (9cc2464)

1.0.1 (2022-10-07)

Bug Fixes

  • license: Incorrect PyPI license. (9cc7c24)

1.0.0 (2022-10-07)

Features