diff --git a/docs/src/installing/index.rst b/docs/src/installing/index.rst index 5140e65..fa45725 100644 --- a/docs/src/installing/index.rst +++ b/docs/src/installing/index.rst @@ -119,12 +119,29 @@ GTDB-Tk reference data GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived: +For full package: + .. code-block:: bash - wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz - wget https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz (or, mirror) + wget https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz + wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz ( mirror for Australia) tar xvzf gtdbtk_data.tar.gz +For split package: + +To create an archive from the GTDB-Tk release data parts: + +1. Ensure all parts of the GTDB-Tk release data are in the same directory. +2. Open a terminal or command prompt. +3. Navigate to the directory containing the parts of the GTDB-Tk release data. +4. Use the following command to concatenate all parts into a single archive: + cat gtdbtk_r220_data.tar.gz.part_* > gtdbtk_r220_data.tar.gz + +5. Once the command finishes executing, you will have a single archive file named 'gtdbtk_r220_data.tar.gz' in the same directory. + +You can find the gtdbtk_r220_data.tar.gz.part_* files under: +https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/auxillary_files/gtdbtk_package/split_package/gtdbtk_r220_data.tar.gz.part_aa + .. note:: Note that different versions of the GTDB release data may not run on all versions of GTDB-Tk, check the supported versions! @@ -137,7 +154,7 @@ GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchiv - Minimum version - Maximum version - MD5 - * - `R220 `_ + * - `R220 `_ - 2.4.0 - Current - 5aafa1b9c27ceda003d75adf238ed9e0