pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

# minimal required information

[project]
name = "wezel"
version = "0.1.2"
dependencies = [
  "PySide2",
  "dbdicom",
  "matplotlib", # for plotting curves and creating colormaps
  "numpy",
  "pandas",
  "openpyxl", # required for pandas export to excel
  "importlib-resources>=1.1.0", # for icon inventory

  # Using only dilate and erode functions - replace by skimage
  # "opencv-python<=4.5.3.56", # previous hack to fix a bug in building executable
  # Consider removing limit on open-cvversion number 
  # -> creates installation issues (wheel no longer up to date)
  "opencv-python",

  # restricting to the latest stable release for now due to a bug
  # introduced in 0.20.0 that causes executables to crash. The bug is known
  # and a fix will presumably be included in upcoming releases
  # in which case this restriction can be removed.
  # https://github.com/scikit-image/scikit-image/issues/6784
  # https://github.com/scientific-python/lazy_loader/pull/39
  # Note on pyton 3.11 scikit image must be installed as
  # pip install --pre scikit-image<=0.19.0 
  # until a new version is released (0.21.0)
  "scikit-image<=0.19.0",
  
  # This has become part of wezel - package includes api's to create executables
  # package manager module needs extending though
  'pyinstaller', 

  "scipy", # currently only used in surface display and the shift function in mask_filter (can be replaced)
]

# optional information

description = "Prototyping medical imaging applications"
readme = "README.md"
authors = [
  { name = "Steven Sourbron", email = "s.sourbron@sheffield.ac.uk" },
  { name = "Steve Shillitoe", email = "s.shillitoe@sheffield.ac.uk" },
  { name = "Joao Almeida e Sousa", email = "j.g.sousa@sheffield.ac.uk" }, 
  ]
license = { file = "LICENSE" }
classifiers = [
  # How mature is this project? Common values are
  #   3 - Alpha
  #   4 - Beta
  #   5 - Production/Stable
  'Development Status :: 3 - Alpha',

  # Indicate who your project is intended for
  'Intended Audience :: Developers',
  'Intended Audience :: Science/Research',
  'Topic :: Scientific/Engineering',
  'Environment :: Console',
  'Operating System :: OS Independent',

  'License :: OSI Approved :: Apache Software License',
  "Programming Language :: Python",
  "Programming Language :: Python :: 3"
]
keywords = ['python', "medical imaging", "Graphical User Interface"]

# Excluding 3.11 for now as some packages don't have wheels yet
# Example scikit-image (coming in the next version)
requires-python = ">=3.7, <3.11" 

[project.urls]
"Homepage" = "https://github.com/QIB-Sheffield/wezel"


[tool.setuptools]
# ...
# By default, include-package-data is true in pyproject.toml, so you do
# NOT have to specify this line.
include-package-data = true


[tool.setuptools.packages.find]
where = ["src"]

[project.optional-dependencies]

docs = [
    "sphinx",
    "sphinx_rtd_theme",
    "myst-parser", 
    "sphinx-copybutton",
    "sphinx-remove-toctrees",
]
plugins = [
  "dipy",
  "SimpleITK",
  "itk-elastix",
  "scikit-learn",
  "pyvista", 
  "pyvistaqt", 
]