diff --git a/cime_config/config_component.xml b/cime_config/config_component.xml
index 27d22db..7e1061d 100644
--- a/cime_config/config_component.xml
+++ b/cime_config/config_component.xml
@@ -73,6 +73,7 @@
zstar_75L,zstar_65L,hycom1,sigma_shelf_zstar
zstar_65L
+ hycom1
hycom1
sigma_shelf_zstar
diff --git a/param_templates/MOM_input.yaml b/param_templates/MOM_input.yaml
index ffe71d6..f83a64c 100644
--- a/param_templates/MOM_input.yaml
+++ b/param_templates/MOM_input.yaml
@@ -115,16 +115,6 @@ Global:
units: Boolean
value:
$OCN_GRID == "tx2_3v2": False
- DIABATIC_FIRST:
- description: |
- "[Boolean] default = False
- If true, apply diabatic and thermodynamic processes,
- including buoyancy forcing and mass gain or loss,
- before stepping the dynamics forward."
- datatype: logical
- units: Boolean
- value:
- $OCN_GRID == "tx2_3v2": True
USE_REGRIDDING:
description: |
"[Boolean] default = False
@@ -615,6 +605,16 @@ Global:
PQM_IH6IH5 (5th-order accurate)"
datatype: string
value: "PPM_CW"
+ REMAP_VEL_CONSERVE_KE:
+ description: |
+ "[Boolean] default = False
+ If true, a correction is applied to the baroclinic component of velocity after
+ remapping so that total KE is conserved. KE may not be conserved when
+ (CS%BBL_h_vel_mask > 0.0) .and. (CS%h_vel_mask > 0.0)"
+ datatype: logical
+ units: Boolean
+ value:
+ $OCN_GRID == "tx2_3v2": False
INIT_LAYERS_FROM_Z_FILE:
description: |
"[Boolean] default = False
@@ -662,6 +662,15 @@ Global:
datatype: logical
units: Boolean
value: False
+ Z_INIT_REMAP_GENERAL:
+ description: |
+ "[Boolean] default = False
+ If false, only initializes to z* coordinates. If true, allows initialization
+ directly to general coordinates."
+ datatype: logical
+ units: Boolean
+ value:
+ $MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID in ["tx2_3v2"]: True
USE_VARIABLE_MIXING:
description: |
"[Boolean] default = False
@@ -913,7 +922,7 @@ Global:
datatype: real
units: not defined
value:
- $MOM6_VERTICAL_GRID == "hycom1": 0.01
+ $MOM6_VERTICAL_GRID == "hycom1": 0.0
MAXIMUM_INT_DEPTH_CONFIG:
description: |
"default = 'NONE'
@@ -943,7 +952,9 @@ Global:
The list of maximum thickness for each layer."
datatype: string
value:
- $MOM6_VERTICAL_GRID == "hycom1": '"FNC1:400,31000.0,0.1,.01"'
+ $MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID in ["tx2_3v2"]: |
+ '"FILE:${DIN_LOC_ROOT}/ocn/mom/grid_indpt/dz_max_90th_quantile.nc,dz"'
+ else: '"FNC1:400,31000.0,0.1,.01"'
BOUND_CORIOLIS:
description: |
"[Boolean] default = False
@@ -1366,6 +1377,24 @@ Global:
value:
$OCN_GRID == "tx2_3v2": 0.0
$OCN_GRID == "MISOMIP": 0.0
+ KHTH_MIN:
+ description: |
+ "[m2 s-1] default = 0.0
+ The minimum horizontal thickness diffusivity"
+ datatype: real
+ units: m2 s-1
+ value:
+ $OCN_GRID == "tx2_3v2": 50.0
+ FULL_DEPTH_KHTH_MIN:
+ description: |
+ "[Boolean] default = False
+ KHTH_MIN is enforced throughout the whole water column. Otherwise,
+ KHTH_MIN is only enforced at the surface. This parameter is only available
+ when KHTH_USE_EBT_STRUCT=True and KHTH_MIN>0."
+ datatype: logical
+ units: Boolean
+ value:
+ $OCN_GRID == "tx2_3v2": True
KHTH_MAX_CFL:
description: |
"[nondimensional] default = 0.8
@@ -2001,7 +2030,18 @@ Global:
datatype: integer
value:
$OCN_GRID == "tx0.25v1": 3
- $OCN_GRID == "tx2_3v2": 3
+ $OCN_GRID == "tx2_3v2": 2
+ OPACITY_SCHEME:
+ description: |
+ "default = 'MANIZZA_05'
+ This character string specifies how chlorophyll concentrations are translated
+ into opacities. Currently valid options include:
+ MANIZZA_05 - Use Manizza et al., GRL, 2005.
+ MOREL_88 - Use Morel, JGR, 1988.
+ OHLMANN_03 - Use Ohlmann, J Clim, 2003."
+ datatype: string
+ value:
+ $OCN_GRID == "tx2_3v2": "OHLMANN_03"
TRACER_ADVECTION_SCHEME:
description: |
"default = 'PLM'
@@ -2037,6 +2077,16 @@ Global:
units: m2 s-1
value:
$OCN_GRID == "tx2_3v2": 50.0
+ FULL_DEPTH_KHTR_MIN:
+ description: |
+ "[Boolean] default = False
+ KHTR_MIN is enforced throughout the whole water column. Otherwise,
+ KHTR_MIN is only enforced at the surface. This parameter is only available
+ when KHTR_USE_EBT_STRUCT=True and KHTR_MIN>0."
+ datatype: logical
+ units: Boolean
+ value:
+ $OCN_GRID == "tx2_3v2": True
DEBUG:
description: |
"If true, write out verbose debugging data."
diff --git a/param_templates/json/MOM_input.json b/param_templates/json/MOM_input.json
index 4e4039d..ea5463d 100644
--- a/param_templates/json/MOM_input.json
+++ b/param_templates/json/MOM_input.json
@@ -68,14 +68,6 @@
"$OCN_GRID == \"tx2_3v2\"": false
}
},
- "DIABATIC_FIRST": {
- "description": "\"[Boolean] default = False\nIf true, apply diabatic and thermodynamic processes,\nincluding buoyancy forcing and mass gain or loss,\nbefore stepping the dynamics forward.\"\n",
- "datatype": "logical",
- "units": "Boolean",
- "value": {
- "$OCN_GRID == \"tx2_3v2\"": true
- }
- },
"USE_REGRIDDING": {
"description": "\"[Boolean] default = False\nIf True, use the ALE algorithm (regridding/remapping).\nIf False, use the layered isopycnal algorithm.\"\n",
"datatype": "logical",
@@ -467,6 +459,14 @@
"datatype": "string",
"value": "PPM_CW"
},
+ "REMAP_VEL_CONSERVE_KE": {
+ "description": "\"[Boolean] default = False\nIf true, a correction is applied to the baroclinic component of velocity after\nremapping so that total KE is conserved. KE may not be conserved when\n(CS%BBL_h_vel_mask > 0.0) .and. (CS%h_vel_mask > 0.0)\"\n",
+ "datatype": "logical",
+ "units": "Boolean",
+ "value": {
+ "$OCN_GRID == \"tx2_3v2\"": false
+ }
+ },
"INIT_LAYERS_FROM_Z_FILE": {
"description": "\"[Boolean] default = False\nIf true, intialize the layer thicknesses, temperatures,\nand salnities from a Z-space file on a latitude-\nlongitude grid.\"\n",
"datatype": "logical",
@@ -505,6 +505,14 @@
"units": "Boolean",
"value": false
},
+ "Z_INIT_REMAP_GENERAL": {
+ "description": "\"[Boolean] default = False\nIf false, only initializes to z* coordinates. If true, allows initialization\ndirectly to general coordinates.\"\n",
+ "datatype": "logical",
+ "units": "Boolean",
+ "value": {
+ "$MOM6_VERTICAL_GRID == \"hycom1\" and $OCN_GRID in [\"tx2_3v2\"]": true
+ }
+ },
"USE_VARIABLE_MIXING": {
"description": "\"[Boolean] default = False\nIf true, the variable mixing code will be called. This\nallows diagnostics to be created even if the scheme is\nnot used. If KHTR_SLOPE_CFF>0 or KhTh_Slope_Cff>0,\nthis is set to true regardless of what is in the\nparameter file.\"\n",
"datatype": "logical",
@@ -694,7 +702,7 @@
"datatype": "real",
"units": "not defined",
"value": {
- "$MOM6_VERTICAL_GRID == \"hycom1\"": 0.01
+ "$MOM6_VERTICAL_GRID == \"hycom1\"": 0.0
}
},
"MAXIMUM_INT_DEPTH_CONFIG": {
@@ -708,7 +716,8 @@
"description": "\"default = 'NONE'\nDetermines how to specify the maximum layer thicknesses.\nValid options are:\nNONE - there are no maximum layer thicknesses\nPARAM - use the vector-parameter MAX_LAYER_THICKNESS\nFILE:string - read from a file. The string specifies\nthe filename and variable name, separated\nby a comma or space, e.g. FILE:lev.nc,Z\nFNC1:string - FNC1:dz_min,H_total,power,precision\nThe list of maximum thickness for each layer.\"\n",
"datatype": "string",
"value": {
- "$MOM6_VERTICAL_GRID == \"hycom1\"": "\"FNC1:400,31000.0,0.1,.01\""
+ "$MOM6_VERTICAL_GRID == \"hycom1\" and $OCN_GRID in [\"tx2_3v2\"]": "'\"FILE:${DIN_LOC_ROOT}/ocn/mom/grid_indpt/dz_max_90th_quantile.nc,dz\"'\n",
+ "else": "\"FNC1:400,31000.0,0.1,.01\""
}
},
"BOUND_CORIOLIS": {
@@ -1021,6 +1030,22 @@
"$OCN_GRID == \"MISOMIP\"": 0.0
}
},
+ "KHTH_MIN": {
+ "description": "\"[m2 s-1] default = 0.0\nThe minimum horizontal thickness diffusivity\"\n",
+ "datatype": "real",
+ "units": "m2 s-1",
+ "value": {
+ "$OCN_GRID == \"tx2_3v2\"": 50.0
+ }
+ },
+ "FULL_DEPTH_KHTH_MIN": {
+ "description": "\"[Boolean] default = False\nKHTH_MIN is enforced throughout the whole water column. Otherwise,\nKHTH_MIN is only enforced at the surface. This parameter is only available\nwhen KHTH_USE_EBT_STRUCT=True and KHTH_MIN>0.\"\n",
+ "datatype": "logical",
+ "units": "Boolean",
+ "value": {
+ "$OCN_GRID == \"tx2_3v2\"": true
+ }
+ },
"KHTH_MAX_CFL": {
"description": "\"[nondimensional] default = 0.8\nThe maximum value of the local diffusive CFL ratio that\nis permitted for the thickness diffusivity. 1.0 is the\nmarginally unstable value in a pure layered model, but\nmuch smaller numbers (e.g. 0.1) seem to work better for\nALE-based models.\"\n",
"datatype": "real",
@@ -1557,7 +1582,14 @@
"datatype": "integer",
"value": {
"$OCN_GRID == \"tx0.25v1\"": 3,
- "$OCN_GRID == \"tx2_3v2\"": 3
+ "$OCN_GRID == \"tx2_3v2\"": 2
+ }
+ },
+ "OPACITY_SCHEME": {
+ "description": "\"default = 'MANIZZA_05'\nThis character string specifies how chlorophyll concentrations are translated\ninto opacities. Currently valid options include:\n MANIZZA_05 - Use Manizza et al., GRL, 2005.\n MOREL_88 - Use Morel, JGR, 1988.\n OHLMANN_03 - Use Ohlmann, J Clim, 2003.\"\n",
+ "datatype": "string",
+ "value": {
+ "$OCN_GRID == \"tx2_3v2\"": "OHLMANN_03"
}
},
"TRACER_ADVECTION_SCHEME": {
@@ -1592,6 +1624,14 @@
"$OCN_GRID == \"tx2_3v2\"": 50.0
}
},
+ "FULL_DEPTH_KHTR_MIN": {
+ "description": "\"[Boolean] default = False\nKHTR_MIN is enforced throughout the whole water column. Otherwise,\nKHTR_MIN is only enforced at the surface. This parameter is only available\nwhen KHTR_USE_EBT_STRUCT=True and KHTR_MIN>0.\"\n",
+ "datatype": "logical",
+ "units": "Boolean",
+ "value": {
+ "$OCN_GRID == \"tx2_3v2\"": true
+ }
+ },
"DEBUG": {
"description": "\"If true, write out verbose debugging data.\"\n",
"datatype": "logical",