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How to deal with controls in sdb #37

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jovinden opened this issue Jul 13, 2022 · 1 comment

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enhancement inhouse

jovinden commented Jul 13, 2022 •

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We need to figure out how to deal with controls in sdb.

Need to touch base with Eric who had worked on a plan with Seve, not sure if there were any decisions.

(sample org task force meeting notes) had some info on this

https://docs.google.com/document/d/15wYZr3baEjtTeez2zWdI4cnL5MSDNDEu52YwBfNC138/edit

jovinden added the enhancement label

jovinden mentioned this issue

Add tags feature for projects (and maybe controls?) #40

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ghost added the inhouse label

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jovinden commented Jul 20, 2022

@eneubauer29 @bgreenhouse meeting notes

PLASMA controls (first step)

In sampleDB, all naive serum can go under study = MNP. all positive controls (KPS, Uganda blood bank donor) go under study = MEP.
Separately, have a file where StudySubjectUID is linked to all metadata (age, sex). Add this to the EPPIstudies sheet @jovinden will get this file together

DNA controls (first step)

Study = cultured parasite controls (need short code)
Separately, have file with metadata: strains, percentages, date collected, date extracted. @eneubauer29 to put this metadata sheet together.

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