From 8cf3d048bba0a8f27c80bf29b9106dc5bcb123ec Mon Sep 17 00:00:00 2001
From: costero-e <orildsaga@gmail.com>
Date: Tue, 19 Nov 2024 11:24:51 +0100
Subject: [PATCH] applying filters to individuals of variants

---
 beacon/connections/mongo/g_variants.py | 2 +-
 docker-compose.yml                     | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/beacon/connections/mongo/g_variants.py b/beacon/connections/mongo/g_variants.py
index 4b1873b..c6fdb11 100644
--- a/beacon/connections/mongo/g_variants.py
+++ b/beacon/connections/mongo/g_variants.py
@@ -220,7 +220,7 @@ def get_individuals_of_variant(self, entry_id: Optional[str], qparams: RequestPa
         query_parameters={}# pragma: no cover
     else:
         query=query_parameters
-    query = apply_filters(self, query, qparams.query.filters, collection,query_parameters, dataset)
+    collection='individuals'
     HGVSIds = client.beacon.genomicVariations \
         .find(query, {"identifiers.genomicHGVSId": 1, "datasetId": 1, "_id": 0})
     HGVSIds=list(HGVSIds)
diff --git a/docker-compose.yml b/docker-compose.yml
index 42926c9..cb9270a 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -78,6 +78,7 @@ services:
       MONGO_INITDB_DATABASE: beacon
     volumes:
       - ./beacon/connections/mongo/mongo-init/:/docker-entrypoint-initdb.d/:ro
+      - ./beacon/connections/mongo/data/:/data
     networks:
       - pub
     #command: --verbose