EVA-3669 New job for deprecating SVE variants by reading accessions of variants from file #1020

	name: Run tests

	on:
	push:
	branches: [ master ]
	pull_request:
	# Temporarily run tests on the feature branch until merged to master
	branches: [ master, feature/ws-contig-alias-integration ]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	mongodb-version: [4.0.18]
	java-version: [1.8]
	python-version: [3.7]

	steps:
	- uses: actions/checkout@v2
	- name: Setup Java JDK
	uses: actions/[email protected]
	# The Java version to make available on the path. Takes a whole or semver Java version, or 1.x syntax (e.g. 1.8 => Java 8.x). Early access versions can be specified in the form of e.g. 14-ea, 14.0.0-ea, or 14.0.0-ea.28
	with:
	java-version: ${{ matrix.java-version }}
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install numpy pandas psycopg2-binary pgpasslib
	- name: Install and Start MongoDB
	run: \|
	wget http://fastdl.mongodb.org/linux/mongodb-linux-x86_64-${{ matrix.mongodb-version }}.tgz
	tar xfz mongodb-linux-x86_64-${{ matrix.mongodb-version }}.tgz
	export PATH=`pwd`/mongodb-linux-x86_64-${{ matrix.mongodb-version }}/bin:$PATH
	mkdir -p data/db
	mongod --dbpath=data/db &
	mongod --version
	- name: Run Maven tests
	run: mvn test
	- name: Run Python tests
	run: \|
	cd eva-accession-import-automation
	python -m tests.test_generate_custom_assembly_report -v

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