diff --git a/src/ontology/components/subclasses.owl b/src/ontology/components/subclasses.owl index 7afb2ec0..279b4d01 100644 --- a/src/ontology/components/subclasses.owl +++ b/src/ontology/components/subclasses.owl @@ -664,6 +664,22 @@ + + + + + + + + + + + + + + + + @@ -39221,6 +39237,12 @@ + + + + + + diff --git a/src/ontology/imports/oba_bot.owl b/src/ontology/imports/oba_bot.owl index d96c3844..f075c1dc 100644 --- a/src/ontology/imports/oba_bot.owl +++ b/src/ontology/imports/oba_bot.owl @@ -26945,6 +26945,46 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A gamma-amino acid that is cyclohexane substituted at position 1 by aminomethyl and carboxymethyl groups. Used for treatment of neuropathic pain and restless legs syndrome. + gabapentin + + + + @@ -331620,6 +331660,16 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + microcephaly + + + + @@ -347562,6 +347612,32 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + + + + + + + + + + + + + + + + + isolated dystonia + + + + @@ -351706,6 +351782,15 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + has an isolated presentation + + + + @@ -357692,6 +357777,52 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + isolated microcephaly + + + + @@ -359460,6 +359591,27 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + + + + + + + + + + + + Mendelian neurodevelopmental disorder + + + + @@ -359668,6 +359820,15 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + neurodevelopmental disorder + + + + @@ -852719,6 +852880,147 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A trait that affects the response to a stimulus with gabapentin. + https://orcid.org/0000-0001-6757-4744 + response to gabapentin trait + trait in response to gabapentin + + + + + + + + + + + + + + + + + + + + + + + + + + The age at which isolated dystonia manifestations first appear. + age at onset of isolated dystonia + age isolated dystonia symptoms begin + age of onset of isolated dystonia + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The amount of a apolipoprotein(a) when measured in blood. + https://orcid.org/0000-0001-6757-4744 + PMID:36959364 + blood apolipoprotein(a) amount + amount of apolipoprotein(a) in blood + + + + + The amount of a apolipoprotein(a) when measured in blood. + AUTO:patterns/patterns/entity_attribute_location + + + + + blood apolipoprotein(a) amount + AUTO:patterns/patterns/entity_attribute_location + + + + @@ -948507,6 +948809,28 @@ See https://github.com/pato-ontology/pato/issues/331. + + + + + + + + + + + + + + + + + Category=gene. + apolipoprotein(a) + + + + @@ -1062842,6 +1063166,28 @@ See https://github.com/pato-ontology/pato/issues/331. + + + + + + + + + + + + + + + + + Category=organism-gene. + apolipoprotein(a) (human) + + + + diff --git a/src/ontology/imports/oba_import.owl b/src/ontology/imports/oba_import.owl index d588b108..7edd5c70 100644 --- a/src/ontology/imports/oba_import.owl +++ b/src/ontology/imports/oba_import.owl @@ -376,6 +376,15 @@ + + + + A gamma-amino acid that is cyclohexane substituted at position 1 by aminomethyl and carboxymethyl groups. Used for treatment of neuropathic pain and restless legs syndrome. + gabapentin + + + + @@ -817,6 +826,14 @@ + + + + isolated dystonia + + + + @@ -163712,6 +163729,99 @@ + + + + A trait that affects the response to a stimulus with gabapentin. + https://orcid.org/0000-0001-6757-4744 + response to gabapentin trait + trait in response to gabapentin + + + + + + + + + + + + + + + + + + + + + + + + + + The age at which isolated dystonia manifestations first appear. + age at onset of isolated dystonia + age isolated dystonia symptoms begin + age of onset of isolated dystonia + + + + + + + + + The amount of a apolipoprotein(a) when measured in blood. + https://orcid.org/0000-0001-6757-4744 + PMID:36959364 + blood apolipoprotein(a) amount + amount of apolipoprotein(a) in blood + + + + + The amount of a apolipoprotein(a) when measured in blood. + AUTO:patterns/patterns/entity_attribute_location + + + + + blood apolipoprotein(a) amount + AUTO:patterns/patterns/entity_attribute_location + + + + + + + + + + + + + + The shape of a heart. + shape of heart + heart shape trait + + + + + The shape of a heart. + AUTO:patterns/patterns/entity_attribute + + + + + shape of heart + AUTO:patterns/patterns/entity_attribute + + + + @@ -187896,6 +188006,16 @@ + + + + + Category=gene. + apolipoprotein(a) + + + + diff --git a/src/ontology/imports/oba_terms.txt b/src/ontology/imports/oba_terms.txt index 9a9510a7..4a38b6c6 100644 --- a/src/ontology/imports/oba_terms.txt +++ b/src/ontology/imports/oba_terms.txt @@ -30,6 +30,7 @@ http://purl.obolibrary.org/obo/CHEBI_36080 http://purl.obolibrary.org/obo/CHEBI_3732 http://purl.obolibrary.org/obo/CHEBI_37812 http://purl.obolibrary.org/obo/CHEBI_42025 +http://purl.obolibrary.org/obo/CHEBI_42797 http://purl.obolibrary.org/obo/CHEBI_42977 http://purl.obolibrary.org/obo/CHEBI_45863 http://purl.obolibrary.org/obo/CHEBI_52649 @@ -85,6 +86,7 @@ http://purl.obolibrary.org/obo/MONDO_0005575 http://purl.obolibrary.org/obo/MONDO_0007079 http://purl.obolibrary.org/obo/MONDO_0007182 http://purl.obolibrary.org/obo/MONDO_0007739 +http://purl.obolibrary.org/obo/MONDO_0015494 http://purl.obolibrary.org/obo/MONDO_0016158 http://purl.obolibrary.org/obo/MONDO_0017276 http://purl.obolibrary.org/obo/MONDO_0018177 @@ -6775,6 +6777,10 @@ http://purl.obolibrary.org/obo/OBA_2051959 http://purl.obolibrary.org/obo/OBA_2051960 http://purl.obolibrary.org/obo/OBA_2051961 http://purl.obolibrary.org/obo/OBA_2051962 +http://purl.obolibrary.org/obo/OBA_2051963 +http://purl.obolibrary.org/obo/OBA_2051964 +http://purl.obolibrary.org/obo/OBA_2051965 +http://purl.obolibrary.org/obo/OBA_VT0000277 http://purl.obolibrary.org/obo/OBA_VT0008631 http://purl.obolibrary.org/obo/OBA_VT0010487 http://purl.obolibrary.org/obo/PATO_0000070 @@ -9191,6 +9197,7 @@ http://purl.obolibrary.org/obo/PR_000009878 http://purl.obolibrary.org/obo/PR_000009880 http://purl.obolibrary.org/obo/PR_000009885 http://purl.obolibrary.org/obo/PR_000009886 +http://purl.obolibrary.org/obo/PR_000009888 http://purl.obolibrary.org/obo/PR_000009891 http://purl.obolibrary.org/obo/PR_000009894 http://purl.obolibrary.org/obo/PR_000009897 diff --git a/src/ontology/iri_dependencies/oba_terms.txt b/src/ontology/iri_dependencies/oba_terms.txt index 21196ead..715ef4f3 100644 --- a/src/ontology/iri_dependencies/oba_terms.txt +++ b/src/ontology/iri_dependencies/oba_terms.txt @@ -13242,3 +13242,10 @@ http://purl.obolibrary.org/obo/PR_Q8WXW3 http://purl.obolibrary.org/obo/PR_000012896 http://purl.obolibrary.org/obo/PATO_0000070 http://purl.obolibrary.org/obo/CHEBI_36080 +http://purl.obolibrary.org/obo/OBA_VT0000277 +http://purl.obolibrary.org/obo/OBA_2051963 +http://purl.obolibrary.org/obo/CHEBI_42797 +http://purl.obolibrary.org/obo/OBA_2051964 +http://purl.obolibrary.org/obo/MONDO_0015494 +http://purl.obolibrary.org/obo/OBA_2051965 +http://purl.obolibrary.org/obo/PR_000009888 diff --git a/src/ontology/reports/class-count-by-prefix.tsv b/src/ontology/reports/class-count-by-prefix.tsv index de6cccbf..e3551bdf 100644 --- a/src/ontology/reports/class-count-by-prefix.tsv +++ b/src/ontology/reports/class-count-by-prefix.tsv @@ -9,7 +9,7 @@ "ZEA" 1 "ZFA" 34 "PO" 215 -"PR" 5569 +"PR" 5570 "BTO" 74 "MP" 3 "HP" 1885 @@ -33,5 +33,5 @@ "" 24381 "GO" 724 "EO" 43 -"OBA" 6686 +"OBA" 6690 "PATO" 34 diff --git a/src/templates/subclasses.csv b/src/templates/subclasses.csv index b19d8d8a..185dcbe7 100644 --- a/src/templates/subclasses.csv +++ b/src/templates/subclasses.csv @@ -4887,3 +4887,5 @@ OBA:2050418,BFO:0000019 OBA:2050420,EFO:0005533 OBA:2050421,GO:0046677 HP:0009800,EFO:0000352 +OBA:VT0000277,EFO:0000651 +OBA:2051963,GO:0036277