DESCRIPTION

Package: HoloFoodR
Type: Package
Version: 1.1.1
Authors@R:
    c(
    person(
        given = "Tuomas", family = "Borman", role = c("aut", "cre"),
        email = "tuomas.v.borman@utu.fi",
        comment = c(ORCID = "0000-0002-8563-8884")
        ),
    person(
        given = "Artur", family = "Sannikov", role = c("aut"),
        email = "arsann@utu.fi",
        comment = c(ORCID = "0000-0001-7765-123X")
        ),
    person(
        given = "Leo", family = "Lahti", role = c("aut"),
        email = "leo.lahti@iki.fi",
        comment = c(ORCID = "0000-0001-5537-637X")
        )
    )
Title: R interface to EBI HoloFood resource
Description:
    Utility package to facilitate integration and analysis of EBI HoloFood data
    in R. This package streamlines access to the resource, allowing for direct
    loading of data into formats optimized for downstream analytics.
biocViews: Software, Infrastructure, DataImport
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
Depends:
    R(>= 4.4.0),
    MultiAssayExperiment,
    TreeSummarizedExperiment
Imports:
    dplyr,
    httr2,
    jsonlite,
    S4Vectors,
    stats,
    utils
Suggests:
    BiocStyle,
    DT,
    ggh4x,
    ggsignif,
    knitr,
    MGnifyR,
    mia,
    miaViz,
    MOFA2,
    patchwork,
    reticulate,
    rmarkdown,
    scater,
    shadowtext,
    testthat,
    UpSetR
URL: https://github.com/EBI-Metagenomics/HoloFoodR
BugReports: https://github.com/EBI-Metagenomics/HoloFoodR/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2