PASSION for Dermatology

This repository contains the code to reproduce all evaluations in the paper "PASSION for Dermatology: Bridging the Diversity Gap with Pigmented Skin Images from Sub-Saharan Africa".

Usage

Run make for a list of possible targets.

Installation

Run this command for installation make install

Reproducibility of the Paper

To reproduce our experiments, we list the detailed comments needed for replicating each experiment below. Note that our experiments were run on a DGX Workstation 1. If less computational power is available, this would require adaptations of the configuration file.

Experiment: Differential Diagnosis and Detecting Impetigo (Table 2 and 3)

python -m src.evaluate_experiments --config_path configs/default.yaml --exp1 --exp2

Experiment: Generalization across Collection Centers and Age Groups (Sec. 5, Paragraph 2 and 3)

python -m src.evaluate_experiments --config_path configs/default.yaml --exp3 --exp4

Code and test conventions

• black for code style
• isort for import sorting
• docstring style: sphinx
• pytest for running tests

Development installation and configurations

To set up your dev environment run:

pip install -r requirements.txt
# install pre-commit hooks
pre-commit install