diff --git a/ArrayList.pm b/ArrayList.pm index 24de2c3..a37719b 100755 --- a/ArrayList.pm +++ b/ArrayList.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) ArrayList.pm diff --git a/ArrayListIterator.pm b/ArrayListIterator.pm index 4d5dea0..7a003bc 100755 --- a/ArrayListIterator.pm +++ b/ArrayListIterator.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) ArrayListIterator.pm diff --git a/CrossmatchSearchEngine.pm b/CrossmatchSearchEngine.pm index 171939b..f5a7604 100755 --- a/CrossmatchSearchEngine.pm +++ b/CrossmatchSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) CrossmatchSearchEngine.pm diff --git a/DFAM.pm b/DFAM.pm index ee72eb0..9ecc763 100755 --- a/DFAM.pm +++ b/DFAM.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) DFAM.pm diff --git a/DFAMRecord.pm b/DFAMRecord.pm index 4fdb2a9..50b3c14 100755 --- a/DFAMRecord.pm +++ b/DFAMRecord.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) DFAMRecord.pm diff --git a/DateRepeats b/DateRepeats index a07a8a1..2f989e5 100755 --- a/DateRepeats +++ b/DateRepeats @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) DateRepeats diff --git a/DeCypherSearchEngine.pm b/DeCypherSearchEngine.pm index 7f5d319..265eb8d 100755 --- a/DeCypherSearchEngine.pm +++ b/DeCypherSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) DeCypherSearchEngine.pm diff --git a/DupMasker b/DupMasker index b67e1e2..fdbd81c 100755 --- a/DupMasker +++ b/DupMasker @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) DupMasker diff --git a/EMBL.pm b/EMBL.pm index 452c234..8a1d9ac 100755 --- a/EMBL.pm +++ b/EMBL.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) EMBL.pm diff --git a/FastaDB.pm b/FastaDB.pm index ac7ca70..435a052 100755 --- a/FastaDB.pm +++ b/FastaDB.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) FastaDB.pm diff --git a/HMMERSearchEngine.pm b/HMMERSearchEngine.pm index 755bef2..3469b5d 100755 --- a/HMMERSearchEngine.pm +++ b/HMMERSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) HMMERSearchEngine.pm diff --git a/LibraryUtils.pm b/LibraryUtils.pm index 29d4063..e94c1d3 100755 --- a/LibraryUtils.pm +++ b/LibraryUtils.pm @@ -1,4 +1,4 @@ -#!/u1/local/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) LibraryUtils.pm diff --git a/Matrix.pm b/Matrix.pm index 50488c2..4d95d14 100755 --- a/Matrix.pm +++ b/Matrix.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) Matrix.pm diff --git a/NCBIBlastSearchEngine.pm b/NCBIBlastSearchEngine.pm index 743e67f..80b9d20 100755 --- a/NCBIBlastSearchEngine.pm +++ b/NCBIBlastSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) NCBIBlastSearchEngine.pm diff --git a/NCBIBlastXSearchEngine.pm b/NCBIBlastXSearchEngine.pm index 7aee88d..982ecb0 100755 --- a/NCBIBlastXSearchEngine.pm +++ b/NCBIBlastXSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) NCBIBlastXSearchEngine.pm diff --git a/PRSearchResult.pm b/PRSearchResult.pm index 3013c31..50754f2 100755 --- a/PRSearchResult.pm +++ b/PRSearchResult.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) PRSearchResult.pm diff --git a/ProcessRepeats b/ProcessRepeats index 5ae705f..ede7b5e 100755 --- a/ProcessRepeats +++ b/ProcessRepeats @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) ProcessRepeats diff --git a/PubRef.pm b/PubRef.pm index d156fbb..c4b14cf 100755 --- a/PubRef.pm +++ b/PubRef.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) PubRef.pm diff --git a/RepbaseEMBL.pm b/RepbaseEMBL.pm index 7507e15..72ada4f 100755 --- a/RepbaseEMBL.pm +++ b/RepbaseEMBL.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepbaseEMBL.pm diff --git a/RepbaseRecord.pm b/RepbaseRecord.pm index ea52806..228e64a 100755 --- a/RepbaseRecord.pm +++ b/RepbaseRecord.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepbaseRecord.pm diff --git a/RepeatMasker b/RepeatMasker index ea64ef7..dd477df 100755 --- a/RepeatMasker +++ b/RepeatMasker @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepeatMasker diff --git a/RepeatMaskerConfig.tmpl b/RepeatMaskerConfig.tmpl index b7f4a28..8bd1337 100755 --- a/RepeatMaskerConfig.tmpl +++ b/RepeatMaskerConfig.tmpl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepeatMaskerConfig.pm diff --git a/RepeatProteinMask b/RepeatProteinMask index 9c5e5f7..5640e58 100755 --- a/RepeatProteinMask +++ b/RepeatProteinMask @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepeatProteinMask diff --git a/RepeatRecord.pm b/RepeatRecord.pm index a79331b..687599e 100755 --- a/RepeatRecord.pm +++ b/RepeatRecord.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) RepeatRecord.pm diff --git a/SearchEngineI.pm b/SearchEngineI.pm index 3a84072..3d40533 100755 --- a/SearchEngineI.pm +++ b/SearchEngineI.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) SearchEngineI.pm diff --git a/SearchResult.pm b/SearchResult.pm index 08592c6..e089324 100755 --- a/SearchResult.pm +++ b/SearchResult.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) SearchResult.pm diff --git a/SearchResultCollection.pm b/SearchResultCollection.pm index effb101..c5efa3d 100755 --- a/SearchResultCollection.pm +++ b/SearchResultCollection.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) SearchResultCollection.pm diff --git a/SeqDBI.pm b/SeqDBI.pm index 9a70670..1bde749 100755 --- a/SeqDBI.pm +++ b/SeqDBI.pm @@ -1,4 +1,4 @@ -#!/tools/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) SeqDBI.pm diff --git a/SimpleBatcher.pm b/SimpleBatcher.pm index c1adb1a..6969fc5 100755 --- a/SimpleBatcher.pm +++ b/SimpleBatcher.pm @@ -1,4 +1,4 @@ -#!/tools/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) SimpleBatcher.pm diff --git a/TRF.pm b/TRF.pm index bd8f597..d5fb632 100755 --- a/TRF.pm +++ b/TRF.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) TRF.pm diff --git a/TRFResult.pm b/TRFResult.pm index 0658583..ebf00a9 100755 --- a/TRFResult.pm +++ b/TRFResult.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) TRFResult.pm diff --git a/TRFSearchResult.pm b/TRFSearchResult.pm index 4982667..1403eca 100755 --- a/TRFSearchResult.pm +++ b/TRFSearchResult.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) TRFTRFSearchResult.pm diff --git a/Taxonomy.pm b/Taxonomy.pm index ef6d1af..af3d697 100755 --- a/Taxonomy.pm +++ b/Taxonomy.pm @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) Taxonomy.pm diff --git a/WUBlastSearchEngine.pm b/WUBlastSearchEngine.pm index 01aaccd..7996959 100755 --- a/WUBlastSearchEngine.pm +++ b/WUBlastSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) WUBlastSearchEngine.pm diff --git a/WUBlastXSearchEngine.pm b/WUBlastXSearchEngine.pm index 81e5e8a..7aef7a4 100755 --- a/WUBlastXSearchEngine.pm +++ b/WUBlastXSearchEngine.pm @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) WUBlastXSearchEngine.pm diff --git a/t/TEST b/t/TEST index 44698a3..532e62f 100755 --- a/t/TEST +++ b/t/TEST @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl +#!/usr/bin/env perl use strict; diff --git a/util/buildRMLibFromEMBL.pl b/util/buildRMLibFromEMBL.pl index d7feb37..582fa32 100755 --- a/util/buildRMLibFromEMBL.pl +++ b/util/buildRMLibFromEMBL.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) buildRMLibFromEMBL.pl diff --git a/util/buildSummary.pl b/util/buildSummary.pl index 2ffff3e..ef1d57d 100755 --- a/util/buildSummary.pl +++ b/util/buildSummary.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) buildSummary diff --git a/util/calcDivergenceFromAlign.pl b/util/calcDivergenceFromAlign.pl index 0cce9d6..5e4c613 100755 --- a/util/calcDivergenceFromAlign.pl +++ b/util/calcDivergenceFromAlign.pl @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) calcDivergenceFromAlign.pl diff --git a/util/createRepeatLandscape.pl b/util/createRepeatLandscape.pl index e397a16..b6c7c20 100755 --- a/util/createRepeatLandscape.pl +++ b/util/createRepeatLandscape.pl @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) createRepeatLandscape.pl diff --git a/util/dupliconToSVG.pl b/util/dupliconToSVG.pl index e525168..512d06a 100755 --- a/util/dupliconToSVG.pl +++ b/util/dupliconToSVG.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl -w +#!/usr/bin/env perl -w ##---------------------------------------------------------------------------## ## File: ## @(#) dupliconToSVG.pl diff --git a/util/getRepeatMaskerBatch.pl b/util/getRepeatMaskerBatch.pl index ca845f3..961c3d2 100755 --- a/util/getRepeatMaskerBatch.pl +++ b/util/getRepeatMaskerBatch.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) getRepeatMaskerBatch.pl diff --git a/util/queryRepeatDatabase.pl b/util/queryRepeatDatabase.pl index 3527ec2..2babb5a 100755 --- a/util/queryRepeatDatabase.pl +++ b/util/queryRepeatDatabase.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) queryRepeatDatabase.pl diff --git a/util/queryTaxonomyDatabase.pl b/util/queryTaxonomyDatabase.pl index a580a9a..f2d87e3 100755 --- a/util/queryTaxonomyDatabase.pl +++ b/util/queryTaxonomyDatabase.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) queryTaxonomyDatabase.pl diff --git a/util/rmOut2Fasta.pl b/util/rmOut2Fasta.pl index 5871ba6..d89be5b 100755 --- a/util/rmOut2Fasta.pl +++ b/util/rmOut2Fasta.pl @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) rmOut2Fasta.pl diff --git a/util/rmOutToGFF3.pl b/util/rmOutToGFF3.pl index 33655a5..f7c6142 100755 --- a/util/rmOutToGFF3.pl +++ b/util/rmOutToGFF3.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) rmOutToGFF3.pl diff --git a/util/rmToUCSCTables.pl b/util/rmToUCSCTables.pl index df20ec7..d89330c 100755 --- a/util/rmToUCSCTables.pl +++ b/util/rmToUCSCTables.pl @@ -1,4 +1,4 @@ -#!/usr/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) rmToUCSCTables.pl diff --git a/util/trfMask b/util/trfMask index 8855d8a..cd968a9 100755 --- a/util/trfMask +++ b/util/trfMask @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) trfMask diff --git a/util/wublastToCrossmatch.pl b/util/wublastToCrossmatch.pl index 1022109..39a22c3 100755 --- a/util/wublastToCrossmatch.pl +++ b/util/wublastToCrossmatch.pl @@ -1,4 +1,4 @@ -#!/usr/local/bin/perl +#!/usr/bin/env perl ##---------------------------------------------------------------------------## ## File: ## @(#) wublastToCrossmatch.pl