Python pipeline for neuroimaging data. Documentation at https://clpipe.readthedocs.io/en/latest/index.html
This pipeline is now in an initial release. If you run into issues, find bugs, or have feature requests, please create an issue in this repository. If you have longer questions about the pipeline, or specific questions about the design choices, please get in contact with the creator of this pipeline, Teague Henry ([email protected])
If you use clpipe to process data for a publication, please cite the Zenodo repository linked above. A manuscript describing clpipe is being prepared, and once published, will be the citation for the pipeline.
- Open a Longleaf terminal session
- Switch to python 3.6.6 using
module add python/3.6.6 - Install clpipe from GitHub with
pip3 install --user --upgrade git+git://github.com/CohenLabUNC/clpipe.git
All necessary dependencies should install to your local Python library, and the console commands should be immediately useable.