DESCRIPTION

Package: MOSim
Title: Multi-Omics Simulation (MOSim)
Version: 2.1.0
Authors@R: c(person("Carolina", "Monzó", email = "carolmonzoc@gmail.com", role = c("aut")), person("Carlos", "Martínez", email = "cmarmir@gmail.com", role = "aut"), person("Sonia", "Tarazona", email = "sotacam@gmail.com", role = c("cre", "aut")))
Description: MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
Encoding: UTF-8
Depends:
    R (>= 4.2.0)
License: GPL-3
LazyData: false
biocViews: Software, TimeCourse, ExperimentalDesign, RNASeq
BugReports: https://github.com/ConesaLab/MOSim/issues
URL: https://github.com/ConesaLab/MOSim
Imports:
    HiddenMarkov,
    zoo,
    IRanges,
    S4Vectors,
    dplyr,
    ggplot2,
    lazyeval,
    matrixStats,
    methods,
    rlang,
    stringi,
    stringr,
    scran,
    Seurat,
    Signac,
    edgeR,
    Rcpp
Suggests:
    testthat,
    knitr,
    rmarkdown,
    codetools,
    BiocStyle,
    stats,
    utils,
    purrr,
    scales,
    tibble,
    tidyr,
    Biobase,
    scater,
    SingleCellExperiment,
    decor,
    markdown,
    Rsamtools,
    igraph,
    leiden,
    bluster
Collate:
    'AllClass.R'
    'AllGeneric.R'
    'Simulator.R'
    'SimulatorRegion.R'
    'ChIP-seq.R'
    'DNase-seq.R'
    'MOSim-package.R'
    'functions.R'
    'Simulation.R'
    'MOSim.R'
    'RNA-seq.R'
    'data.R'
    'simulate_WGBS_functions.R'
    'methyl-seq.R'
    'miRNA-seq.R'
    'sc_MOSim.R'
    'sc_coexpression.R'
    'sparsim_functions.R'
    'zzz.R'
RoxygenNote: 7.3.2
VignetteBuilder: knitr
LinkingTo: 
    cpp11,
    Rcpp