pyproject.toml

[build-system] # Require setuptool version due to https://github.com/pypa/setuptools/issues/2938
requires = ["setuptools>=61.0.0", "wheel"]

[project]
name = "simcardems2"
version = "0.0.5"
description = "Library to run cardiac EP simulations"
authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}, {name = "Lena Myklebust", email="lenam@simula.no"}]
license = {text = "MIT"}
readme = "README.md"
requires-python = ">=3.8"
keywords = ["cardiac", "electro-mechanics"]
dependencies = [
    "numpy<2.0",
    "gotranx",
    "fenics-beat",
    "fenics-pulse",
    "toml"
]

[project.urls]
Homepage = "https://computationalphysiology.github.io/simcardems2"
Documentation = "https://computationalphysiology.github.io/simcardems2"
Source = "https://github.com/computationalphysiology/simcardems2"
Tracker = "https://github.com/computationalphysiology/simcardems2/issues"

[project.optional-dependencies]
test = [
    "pytest",
    "pytest-cov",
    "gotranx",
    "numba"
]
dev = [
    "pdbpp",
    "ipython",
    "bump2version",
    "pre-commit",
]
pypi = [
    "twine",
    "build"
]

all = [
   "fenics-beat[test]",
   "fenics-beat[docs]",
   "fenics-beat[pypi]",
   "fenics-beat[dev]",
   "fenics-beat[demos]"
]


[tool.setuptools]
license-files = [
    "LICENSE",
]


[tool.pytest.ini_options]
markers = [
    "skip_in_parallel: Skip test when running in parallel",
]

[tool.ruff]

# Exclude a variety of commonly ignored directories.
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
    "demos",
]

# Same as Black.
line-length = 100

# Allow unused variables when underscore-prefixed.

# Assume Python 3.10.
target-version = "py310"


[tool.ruff.lint]
# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
select = ["E", "F"]
ignore = ["E402", "E741", "E743", "E731"]

# Allow autofix for all enabled rules (when `--fix`) is provided.
fixable = ["A", "B", "C", "D", "E", "F"]
unfixable = []

dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

[tool.ruff.lint.mccabe]
# Unlike Flake8, default to a complexity level of 10.
max-complexity = 10


[tool.mypy]
files = ["src/simcardems2", "tests"]
ignore_missing_imports = true
exclude = [
    "demos"
]