README.md

Python client to CollaboratorDB

Minimum working example:

import collaboratordb as cdb
obj = cdb.fetch_object("scRNAseq:ZeiselBrainData@2023-08-08")
## Class SummarizedExperiment with 20006 features and 3005 samples
##   assays: ['counts']
##   row_data: ['featureType']
##   col_data: ['tissue', 'group #', 'total mRNA mol', 'well', 'sex', 'age', 'diameter', 'cell_id', 'level1class', 'level2class']

Note

This project has been set up using PyScaffold 4.5. For details and usage information on PyScaffold see https://pyscaffold.org/.