From ec8033638825b39d6fefafb7edd395e3ca0988da Mon Sep 17 00:00:00 2001
From: Daniel Nilsson <daniel.k.nilsson@gmail.com>
Date: Tue, 2 Jul 2024 09:23:07 +0200
Subject: [PATCH] Add a test for trgt uninformative MCs

---
 tests/cli/test_cli.py                      |   5 +++++
 tests/conftest.py                          |   5 +++++
 tests/fixtures/HG002_Revio.sort.vcf.gz     | Bin 0 -> 1131 bytes
 tests/fixtures/HG002_Revio.sort.vcf.gz.tbi | Bin 0 -> 513 bytes
 4 files changed, 10 insertions(+)
 create mode 100644 tests/fixtures/HG002_Revio.sort.vcf.gz
 create mode 100644 tests/fixtures/HG002_Revio.sort.vcf.gz.tbi

diff --git a/tests/cli/test_cli.py b/tests/cli/test_cli.py
index bf58d4e..a043b1e 100644
--- a/tests/cli/test_cli.py
+++ b/tests/cli/test_cli.py
@@ -19,3 +19,8 @@ def test_stranger_cli_zipped(vcf_zipped_path):
     runner = CliRunner()
     result = runner.invoke(cli, [vcf_zipped_path])
     assert result.exit_code == 0
+
+def test_stranger_trgt_dot_mc(vcf_trgt_path_dot_mc):
+    runner = CliRunner()
+    result = runner.invoke(cli, ["--trgt", vcf_trgt_path_dot_mc])
+    assert result.exit_code == 0
diff --git a/tests/conftest.py b/tests/conftest.py
index 79c5889..f62de16 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -15,6 +15,11 @@ def vcf_zipped_path():
     return "tests/fixtures/643594.clinical.str.vcf.gz"
 
 
+@pytest.fixture()
+def vcf_trgt_path_dot_mc():
+    return "tests/fixtures/HG002_Revio.sort.vcf.gz"
+
 @pytest.fixture()
 def repeats_file_handle():
     return open(repeats_path, "r")
+
diff --git a/tests/fixtures/HG002_Revio.sort.vcf.gz b/tests/fixtures/HG002_Revio.sort.vcf.gz
new file mode 100644
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GIT binary patch
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diff --git a/tests/fixtures/HG002_Revio.sort.vcf.gz.tbi b/tests/fixtures/HG002_Revio.sort.vcf.gz.tbi
new file mode 100644
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GIT binary patch
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literal 0
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