diff --git a/rmgpy/yml.py b/rmgpy/yml.py index bd41c45d25f..b30dd7ec4bc 100644 --- a/rmgpy/yml.py +++ b/rmgpy/yml.py @@ -99,7 +99,7 @@ def get_mech_dict(spcs, rxns, solvent='solvent', solvent_data=None): def get_radicals(spc): - if spc.molecule[0].to_smiles() == "[O][O]": # treat oxygen as stable to improve radical analysis + if spc.molecule[0].smiles == "[O][O]": # treat oxygen as stable to improve radical analysis return 0 else: return spc.molecule[0].multiplicity-1 @@ -112,7 +112,7 @@ def obj_to_dict(obj, spcs, names=None, label="solvent"): result_dict["type"] = "Species" if obj.contains_surface_site(): result_dict["adjlist"] = obj.molecule[0].to_adjacency_list() - result_dict["smiles"] = obj.molecule[0].to_smiles() + result_dict["smiles"] = obj.molecule[0].smiles result_dict["thermo"] = obj_to_dict(obj.thermo, spcs) result_dict["radicalelectrons"] = get_radicals(obj) if obj.liquid_volumetric_mass_transfer_coefficient_data: