From 82eed91f8dde8cbafb0c7b3059ae74c579cc8173 Mon Sep 17 00:00:00 2001 From: "alida.avola@icloud.com" Date: Wed, 25 Sep 2024 15:22:33 +0100 Subject: [PATCH] Update NSForestMarkersSource.tsv --- src/markers/NSForestMarkersSource.tsv | 30 ++++++++++++++++++++------- 1 file changed, 23 insertions(+), 7 deletions(-) diff --git a/src/markers/NSForestMarkersSource.tsv b/src/markers/NSForestMarkersSource.tsv index 3cd0ee3..c3d98aa 100644 --- a/src/markers/NSForestMarkersSource.tsv +++ b/src/markers/NSForestMarkersSource.tsv @@ -1,7 +1,23 @@ -class Cell_type Marker_set Minimal_markers Minimal_markers_label Organ Species Species_abbv Organ_region Parent FBeta_confidence_score Marker_set_xref CL_agreed -CL:4028006 alveolar type 2 fibroblast cell CL:4037001 ensembl:ENSG00000168079|ensembl:ENSG00000174807 SCARA5|CD248 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.85 https://doi.org/10.5281/zenodo.11165918 True -CL:4028004 alveolar type 1 fibroblast cell CL:4037002 ensembl:ENSG00000131471|ensembl:ENSG00000139329 AOC3|LUM Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.7 https://doi.org/10.5281/zenodo.11165918 True -CL:0000583 alveolar macrophage CL:4037003 ensembl:ENSG00000038945|ensembl:ENSG00000170323 MSR1|FABP4 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.8 https://doi.org/10.5281/zenodo.11165918 True -CL:4033041 CCL3-positive alveolar macrophage CL:4037004 ensembl:ENSG00000050730|ensembl:ENSG00000163735 TNIP3|CXCL5 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.67 https://doi.org/10.5281/zenodo.11165918 True -CL:4033042 metallothionein-positive alveolar macrophage CL:4037005 ensembl:ENSG00000100292|ensembl:ENSG00000164120 HMOX1|HPGD Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.41 https://doi.org/10.5281/zenodo.11165918 True -CL:0000000 cell CL:4037006 ensembl:ENSG00000166803|ensembl:ENSG00000171848|ensembl:ENSG00000175063|ensembl:ENSG00000137804 PCLAF|RRM2|UBE2C|NUSAP1 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.26 https://doi.org/10.5281/zenodo.11165918 False \ No newline at end of file +class Cell_type Marker_set Minimal_markers Minimal_markers_label Organ Species Species_abbv Organ_region Parent FBeta_confidence_score Marker_set_xref CL_agreed +CL:4028006 alveolar type 2 fibroblast cell CL:4037001 ensembl:ENSG00000168079|ensembl:ENSG00000174807 SCARA5|CD248 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.85 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4028004 alveolar type 1 fibroblast cell CL:4037002 ensembl:ENSG00000131471|ensembl:ENSG00000139329 AOC3|LUM Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.7 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:0000583 alveolar macrophage CL:4037003 ensembl:ENSG00000038945|ensembl:ENSG00000170323 MSR1|FABP4 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.8 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4033041 CCL3-positive alveolar macrophage CL:4037004 ensembl:ENSG00000050730|ensembl:ENSG00000163735 TNIP3|CXCL5 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.67 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4033042 metallothionein-positive alveolar macrophage CL:4037005 ensembl:ENSG00000100292|ensembl:ENSG00000164120 HMOX1|HPGD Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.41 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:0000000 cell CL:4037006 ensembl:ENSG00000166803|ensembl:ENSG00000171848|ensembl:ENSG00000175063|ensembl:ENSG00000137804 PCLAF|RRM2|UBE2C|NUSAP1 Lung NCBITaxon:9606 Human UBERON:0002048 SO:0001260 0.26 https://doi.org/10.5281/zenodo.11165918 FALSE +CL:0002605 astrocyte of the cerebral cortex CL:4037007 OBI1-AS1 Brain NCBITaxon:9606 Human UBERON:0000956 0.95 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4023036 chandelier pvalb GABAergic cortical interneuron CL:4037008 GPR149|CA8 Brain NCBITaxon:9606 Human UBERON:0000956 0.79 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:0000115 endothelial cell CL:4037009 FLT1|ABCG2 Brain NCBITaxon:9606 Human UBERON:0000956 0.92 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030059 L2/3 intratelencephalic projecting glutamatergic neuron CL:4037010 ONECUT2|COL5A2 Brain NCBITaxon:9606 Human UBERON:0000956 0.67 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030063 L4 intratelencephalic projecting glutamatergic neuron CL:4037011 RORB|ST8SIA4 Brain NCBITaxon:9606 Human UBERON:0000956 0.72 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4023041 L5 extratelencephalic projecting glutamatergic cortical neuron CL:4037012 CHST8|POU3F1 Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030064 L5 intratelencephalic projecting glutamatergic neuron CL:4037013 ARSJ|RORB|KCNK2 Brain NCBITaxon:9606 Human UBERON:0000956 0.76 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030067 L5/6 near-projecting glutamatergic neuron CL:4037014 NPSR1-AS1|TLL1 Brain NCBITaxon:9606 Human UBERON:0000956 0.89 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4023042 L6 corticothalamic-projecting glutamatergic cortical neuron CL:4037015 SEMA5B|ADAMTSL1|SULF1 Brain NCBITaxon:9606 Human UBERON:0000956 0.63 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030065 L6 intratelencephalic projecting glutamatergic neuron CL:4037016 LINC00507|THEMIS Brain NCBITaxon:9606 Human UBERON:0000956 0.64 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4030068 L6 intratelencephalic projecting Car3 glutamatergic neuron CL:4037017 SMYD1|THEMIS Brain NCBITaxon:9606 Human UBERON:0000956 0.87 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4023046 L6b glutamatergic neuron of the primary motor cortex CL:4037018 CCN2|ROS1 Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4023011 lamp5 GABAergic cortical interneuron CL:4037019 LINC00298|KIT Brain NCBITaxon:9606 Human UBERON:0000956 0.81 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:4042013 Lamp5 Lhx6 neuron CL:4037020 CHST9|LAMP5 Brain NCBITaxon:9606 Human UBERON:0000956 0.82 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:0000881 | CL:0000129 perivascular macrophage |microglial cell CL:4037021 APBB1IP|DOCK8 Brain NCBITaxon:9606 Human UBERON:0000956 0.95 https://doi.org/10.5281/zenodo.11165918 TRUE +CL:0002453 oligodendrocyte precursor cell CL:4037022 FERMT1 Brain NCBITaxon:9606 Human UBERON:0000956 0.74 https://doi.org/10.5281/zenodo.11165918 TRUE \ No newline at end of file