Lositan

I made some minor modifications to the Lositan installation scripts that update urls to required java libraries. Hopefully this will help people install and run the program locally on their machines.

Installation:

I successfully performed the installation on a computer running Ubuntu 14.04 LTS, Python 2.7.6, and Java 1.8.0_91. No other systems have been tested.

To install, clone this repository and cd into the lositan directory. Execute the installation scripts in the following order: ./getLibs.sh

./prepareLibs.sh

./prepareLocalExec.sh

Running the program

Execute the runLocal.sh script to run Lositan. You will likely see a bunch of warnings printed to your terminal window, but the program ran fine for me.

./runLocal.sh

Content below this line comes from the original README file.

Lositan/Mcheza

Selection detection workbenches

Web page Lositan: http://popgen.net/soft/lositan

Web page Mcheza: http://popgen.net/soft/mcheza

Paper Lositan: http://www.biomedcentral.com/1471-2105/9/323/

Paper Mcheza: http://bioinformatics.oxfordjournals.org/content/27/12/1717.abstract