add JOSS badge #819
Workflow file for this run
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| jobs: | |
| formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: psf/black@stable | |
| with: | |
| src: "./regional_mom6 ./tests" | |
| testing: | |
| needs: formatting | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/cosima/regional-test-env:updated | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| environment-file: environment-ci.yml | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install from source | |
| run: | | |
| python -m pip install . | |
| - name: Install pytest | |
| run: | | |
| python -m pip install pytest pytest-cov nbval | |
| - name: Test with pytest | |
| run: | | |
| if [[ "${{ matrix.python-version }}" == "3.10" ]]; then | |
| python -m pytest -v --doctest-modules --cov=regional_mom6 --cov-report=xml tests/ regional_mom6/ | |
| else | |
| python -m pytest -v --doctest-modules tests/ regional_mom6/ | |
| fi | |
| - name: Test the example notebook | |
| run: | | |
| ln -s /data demos/PATH_TO_GLORYS_DATA | |
| ln -s /data demos/PATH_TO_GEBCO_FILE | |
| ln -s /build/FRE-NCtools/tools demos/PATH_TO_FRE_TOOLS | |
| python -m pytest --nbval demos/reanalysis-forced.ipynb --nbval-current-env --cov=regional_mom6 --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| if: ${{ matrix.python-version == '3.10' }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./coverage/reports/ | |
| env_vars: OS,PYTHON | |
| files: ./coverage.xml | |
| name: codecov-umbrella |