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config.yaml
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config.yaml
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# PBS configuration
# If submitting to a different project to your default, uncomment line below
# and change project code as appropriate; also set shortpath below
# project: v45
# Force payu to always find, and save, files in this scratch project directory
# (you may need to add the corresponding PBS -l storage flag in sync_data.sh)
# shortpath: /scratch/v45
queue: normal
walltime: 5:00:00
jobname: 025deg_jra55_iaf
# Model configuration
name: common
model: access-om2
input: /g/data/ik11/inputs/access-om2/input_20230515_025deg_topog/common_025deg_jra55
submodels:
- name: atmosphere
model: yatm
exe: /g/data/ik11/inputs/access-om2/bin/yatm_d750b4b.exe
input:
- /g/data/ik11/inputs/access-om2/input_20230515_025deg_topog/yatm_025deg
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/rsds/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/rlds/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/prra/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/prsn/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/psl/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/land/day/friver/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/tas/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/huss/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/uas/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hrPt/vas/gr/v20190429
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/landIce/day/licalvf/gr/v20190429
ncpus: 1
- name: ocean
model: mom
exe: /g/data/ik11/inputs/access-om2/bin/fms_ACCESS-OM_730f0bf_libaccessom2_d750b4b.x
input: /g/data/ik11/inputs/access-om2/input_20230515_025deg_topog/mom_025deg
ncpus: 1456
- name: ice
model: cice5
exe: /g/data/ik11/inputs/access-om2/bin/cice_auscom_1440x1080_480p_edcfa6f_libaccessom2_d750b4b.exe
input: /g/data/ik11/inputs/access-om2/input_20230515_025deg_topog/cice_025deg
ncpus: 361
# Collation
collate:
restart: true
mpi: true
walltime: 1:00:00
mem: 16GB
ncpus: 4
queue: normal
exe: /g/data/ik11/inputs/access-om2/bin/mppnccombine-fast
# Misc
runlog: true
stacksize: unlimited
restart_freq: 1 # use tidy_restarts.py instead
mpirun: --mca io ompio --mca io_ompio_num_aggregators 1
qsub_flags: -W umask=027
env:
UCX_LOG_LEVEL: 'error'
# set number of cores per node (28 for normalbw, 48 for normal on gadi)
platform:
nodesize: 48
# sweep and resubmit on specific errors - see https://github.com/payu-org/payu/issues/241#issuecomment-610739771
userscripts:
error: resub.sh
run: rm -f resubmit.count
# DANGER! Do not uncomment this without checking the script is syncing to the correct location!
# postscript: sync_data.sh