Gaps_to_fasta.py issue

[yangyxt]

From my understanding that this python script is used to parse the gaps.fa file into many contigs with skip_length=10(default) between each contig. Which creates a new fasta file.

In this for loop command, I realize it only writes the sequence to the new file when encountering the next in gaps.fa file. In my case, I only have one contig, which leads to an empty output file. And it seems in this way, we'll always skip the last contig in gaps.fa file.

Pls let me know your thoughts. Thanks!

[jeremiek]

Dear Yangyxt,

You may be working with an old version. Have you tried pulling more recently? There should be another sequence following the for loop to handle that case.

Thank you

[yangyxt]

Dear jeremiek,

Thanks for the info!

I just checked the gaps_to_fasta.py in the latest release, and it seems the same for this part

I actually change it to while loop and readline() for my own usage and it works. Thanks!