Data Visualization #37
Replies: 23 comments 12 replies
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Sean Gaynor: isotope ratio vs. isotope ratio, even for isobaric interference and fractionation metrics. |
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Ryan Ickert: scaling can be a problem. Original Tripoli sticks max and min at top and bottom. Need a way to see bigger picture. |
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Noah: one idea is to add a text output for how fast a beam is growing or decaying. Nicole: SHRIMP software has this and color-codes by beam decay rate. |
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Sometimes I like to zoom in too! Maybe graphical way to scale axes so you can zoom in and out on the fly? |
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Great idea about the zooming. |
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Provide a graphical sense of scale on time series data - for example error bars based on counting stats (+/- on peak Johnson noise), or a static error bar on the side that indicates a sense of scale (e.g., 0.01%, 0.1%, 1% stacked error bars). |
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Clarification: this is for isotope ratio data time series. |
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I'll take it for signal intensities too... |
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Ok on second thought, DEFINITELY on signal intensities. If I have a stable beam sometimes it's hard to tell if I'm just looking at shot noise or the beam has gone haywire, and putting error bars on them corresponding to counting stats +/- JN would let me know that things are good/bad. |
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This is kind of what I mean. This is peak-hopping Daly data from a mixed U-Pu run and I added the error bars myself (based on shot noise, ignoring interpolation complexities). |
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Graham: visualization that includes real-time outlier identification. Recalculate after new data come in. |
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The crowd appreciates the ability to synchronize data rejection across all measurements. |
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For consistency, relates to: #34 (comment) |
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Scott: provide some statistical help/test in figuring out when an isobaric interference exists or is gone. |
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One quick idea would be to have the notes input in Tripoli read by Redux, so that information you noted during the ratio reduction could be easily visible from Redux. |
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Add annotations... as a time series (capture the analysis time) or assigned to a particular output stream -- intensity, isotope ratio, etc. |
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Have a pre-fabricated visualization organization, which can be saved and opened, and tied to a particular method. |
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Ryan and Sean: Maintain OG Tripoli functionality for visualization as well. Drag and drop gets you plots and results. |
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Histogram plot type. Ability to visualize certain blocks/groups of data and look at distributions at certain time windows or entire run. |
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Drag and select a subset of data and see a histogram for that data. |
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@ryanickert : plot everything in a simplex |
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@bowring : need virtual reality goggle interface, GUI |
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Add a text box for numerical outputs, that sits beside the other boxes for e.g. time series and any2 plots. |
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Scott: plot up the residuals to look for time dependence, etc. |
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Warren: having run tables handy is really helpful, and seeing statistics on the run tables. Inspired by Ludwig's HobbsCalc. |
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Have a way to easily pop up the peak shape images while reducing data. |
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Tracking/plotting peak centers, shoulders & baselines for each block. |
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Some way to vizualize the baselines/backgrounds. |
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Visualizations with an x-axis of mass: peak tails. Ryan: peak tails. Visualization of isobaric interference abundances. Your own run. |
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Visualize ion beam intensities and interferences in mass vs. intensity |
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Warren: have. a big scale bar on intensity time series to show absolute value of beam growth/decay. |
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Barrel-level visualizations of on beam-decay, total ions, ionization efficiency. |
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Ryan: "barrel-level" stats like ionization efficiency, signal levels, etc. |
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This thread is for ideas about mass spectrometer data (and metadata) visualization. How do you want to see and interact with mass spectrometer data?
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