From ed4be06ed651cadfac941f0e9defb86b97ae72aa Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:21:40 +1000
Subject: [PATCH 01/27] Moving to local action

---
 .github/actions/compile/action.yaml   | 12 +++++
 .github/actions/configure/action.yaml | 77 +++++++++++++++++++++++++++
 .github/actions/install/action.yaml   | 36 +++++++++++++
 .github/workflows/test.yml            | 12 +++--
 4 files changed, 132 insertions(+), 5 deletions(-)
 create mode 100644 .github/actions/compile/action.yaml
 create mode 100644 .github/actions/configure/action.yaml
 create mode 100644 .github/actions/install/action.yaml

diff --git a/.github/actions/compile/action.yaml b/.github/actions/compile/action.yaml
new file mode 100644
index 000000000..042533616
--- /dev/null
+++ b/.github/actions/compile/action.yaml
@@ -0,0 +1,12 @@
+name: 'TCLB Test'
+description: 'This action tests TCLB'
+inputs:
+  model:
+    description: model to compile
+    default: d2q9
+runs:
+  using: 'composite'
+  steps:
+    - shell: bash
+      id: compile
+      run: cd TCLB && make ${{ inputs.model }}
diff --git a/.github/actions/configure/action.yaml b/.github/actions/configure/action.yaml
new file mode 100644
index 000000000..ff77d16df
--- /dev/null
+++ b/.github/actions/configure/action.yaml
@@ -0,0 +1,77 @@
+name: 'TCLB Test'
+description: 'This action tests TCLB'
+inputs:
+  gpu:
+    description: compile a GPU version
+    default: false
+  cuda_arch:
+    description: CUDA arch (sm_) to use
+    default: sm_50
+  precision:
+    description: compute precision to use
+    default: double
+  rinside:
+    description: compute precision to use
+    default: false
+  marklines:
+    description: compute precision to use
+    default: true
+  coverage:
+    description: compute precision to use
+    default: false
+  paranoid:
+    description: compute precision to use
+    default: true
+  python:
+    description: compute precision to use
+    default: true
+  options:
+    description: other configure options
+    default: ''
+runs:
+  using: 'composite'
+  steps:
+    - shell: bash
+      id: compile
+      run: |
+        cd TCLB
+        make configure
+        CONFOPT=""
+        case "${{ inputs.gpu }}" in
+          true) CONFOPT="$CONFOPT --enable-cuda --with-cuda-arch=${{ inputs.cuda_arch }}" ;;
+          false) CONFOPT="$CONFOPT --disable-cuda" ;;
+          *) echo "Wrong 'gpu' input in configure action"; exit -1
+        esac
+        case "${{ inputs.precision }}" in
+          double) CONFOPT="$CONFOPT --enable-double" ;;
+          float) CONFOPT="$CONFOPT --disable-double" ;;
+          *) echo "Wrong 'precision' input in configure action"; exit -1
+        esac
+        case "${{ inputs.rinside }}" in
+          true) CONFOPT="$CONFOPT --enable-rinside" ;;
+          false) CONFOPT="$CONFOPT --disable-rinside" ;;
+          *) echo "Wrong 'rinside' input in configure action"; exit -1
+        esac
+        case "${{ inputs.marklines }}" in
+          true) CONFOPT="$CONFOPT --enable-marklines" ;;
+          false) CONFOPT="$CONFOPT --disable-marklines" ;;
+          *) echo "Wrong 'marklines' input in configure action"; exit -1
+        esac
+        case "${{ inputs.coverage }}" in
+          true) CONFOPT="$CONFOPT --enable-coverage" ;;
+          false) CONFOPT="$CONFOPT --disable-coverage" ;;
+          *) echo "Wrong 'coverage' input in configure action"; exit -1
+        esac
+        case "${{ inputs.paranoid }}" in
+          true) CONFOPT="$CONFOPT --enable-paranoid" ;;
+          false) CONFOPT="$CONFOPT --disable-paranoid" ;;
+          *) echo "Wrong 'paranoid' input in configure action"; exit -1
+        esac
+        case "${{ inputs.python }}" in
+          true) CONFOPT="$CONFOPT --with-python" ;;
+          false) CONFOPT="$CONFOPT --without-python" ;;
+          *) echo "Wrong 'python' input in configure action"; exit -1
+        esac
+        CONFOPT="$CONFOPT ${{ inputs.options }}"
+        echo "Configure options:$CONFOPT"
+        ./configure $CONFOPT
diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
new file mode 100644
index 000000000..f6aaf24a8
--- /dev/null
+++ b/.github/actions/install/action.yaml
@@ -0,0 +1,36 @@
+name: 'TCLB Install'
+description: 'This action installes TCLB dependencies'
+inputs:
+  R:
+    description: install R
+    default: true
+  essentials:
+    description: install essentials
+    default: false
+  MPI:
+    description: install MPI (openmpi)
+    default: openmpi
+  python_dev:
+    description: install python-dev
+    default: false
+  rdep:
+    description: install python-dev
+    default: true
+runs:
+  using: 'composite'
+  steps:
+    - if: inputs.essentials == true
+      shell: bash
+      run: cd TCLB && tools/install.sh --sudo essentials
+    - if: inputs.R == true
+      shell: bash
+      run: cd TCLB && tools/install.sh --sudo r
+    - if: inputs.MPI == openmpi
+      shell: bash
+      run: cd TCLB && tools/install.sh --sudo openmpi
+    - if: inputs.python_dev == true
+      shell: bash
+      run: cd TCLB && tools/install.sh --sudo python-dev
+    - if: inputs.rdep == true
+      shell: bash
+      run: cd TCLB && tools/install.sh --sudo rdep
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 8ecb6d28a..52f9d83dd 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -1,4 +1,4 @@
-name: Testing the test
+name: Testing models
 
 on: [ push, pull_request ]
 
@@ -10,9 +10,11 @@ jobs:
       matrix:
         model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
     steps:
-    - uses: CFD-GO/action_TCLB_test@master
+    - uses: actions/checkout@v3
+      with:
+        path: 'TCLB'
+    - uses: ./.github/actions/install
+    - uses: ./.github/actions/configure
+    - uses: ./.github/actions/compile
       with:
-        repository: ${{ github.repository }}
         model: ${{ matrix.model }}
-        ref: ${{ github.ref }}
-        install: true

From b6bb419d23b6d816b4fd419d3d78065c9ff846e1 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:24:37 +1000
Subject: [PATCH 02/27] updating actions

---
 .github/actions/compile/action.yaml   |  2 +-
 .github/actions/configure/action.yaml |  1 -
 .github/actions/install/action.yaml   | 10 +++++-----
 .github/workflows/test.yml            |  2 --
 4 files changed, 6 insertions(+), 9 deletions(-)

diff --git a/.github/actions/compile/action.yaml b/.github/actions/compile/action.yaml
index 042533616..f9f1a59e2 100644
--- a/.github/actions/compile/action.yaml
+++ b/.github/actions/compile/action.yaml
@@ -9,4 +9,4 @@ runs:
   steps:
     - shell: bash
       id: compile
-      run: cd TCLB && make ${{ inputs.model }}
+      run: make ${{ inputs.model }}
diff --git a/.github/actions/configure/action.yaml b/.github/actions/configure/action.yaml
index ff77d16df..a35850e2e 100644
--- a/.github/actions/configure/action.yaml
+++ b/.github/actions/configure/action.yaml
@@ -34,7 +34,6 @@ runs:
     - shell: bash
       id: compile
       run: |
-        cd TCLB
         make configure
         CONFOPT=""
         case "${{ inputs.gpu }}" in
diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index f6aaf24a8..115ab9aab 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -21,16 +21,16 @@ runs:
   steps:
     - if: inputs.essentials == true
       shell: bash
-      run: cd TCLB && tools/install.sh --sudo essentials
+      run: tools/install.sh --sudo essentials
     - if: inputs.R == true
       shell: bash
-      run: cd TCLB && tools/install.sh --sudo r
+      run: tools/install.sh --sudo r
     - if: inputs.MPI == openmpi
       shell: bash
-      run: cd TCLB && tools/install.sh --sudo openmpi
+      run: tools/install.sh --sudo openmpi
     - if: inputs.python_dev == true
       shell: bash
-      run: cd TCLB && tools/install.sh --sudo python-dev
+      run: tools/install.sh --sudo python-dev
     - if: inputs.rdep == true
       shell: bash
-      run: cd TCLB && tools/install.sh --sudo rdep
+      run: tools/install.sh --sudo rdep
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 52f9d83dd..1ed5e06b5 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -11,8 +11,6 @@ jobs:
         model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
     steps:
     - uses: actions/checkout@v3
-      with:
-        path: 'TCLB'
     - uses: ./.github/actions/install
     - uses: ./.github/actions/configure
     - uses: ./.github/actions/compile

From ccaa52166c309e81edafd9357940038ff46efcae Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:27:18 +1000
Subject: [PATCH 03/27] correcting values in action

---
 .github/actions/test/action.yaml | 55 ++++++++++++++++++++++++++++++++
 1 file changed, 55 insertions(+)
 create mode 100644 .github/actions/test/action.yaml

diff --git a/.github/actions/test/action.yaml b/.github/actions/test/action.yaml
new file mode 100644
index 000000000..201c13d6a
--- /dev/null
+++ b/.github/actions/test/action.yaml
@@ -0,0 +1,55 @@
+name: 'TCLB Test'
+description: 'This action tests TCLB'
+inputs:
+  repository:
+    description: 'Repository name with owner. For example, actions/checkout'
+    default: ${{ github.repository }}
+  ref:
+    description: branch or tag to test
+    default: master
+  install:
+    description: install dependencies
+    default: false
+  configureoptions:
+    description: options for configure
+    default: --disable-cuda
+  model:
+    description: model to compile
+    default: d2q9
+  cluster:
+    description: use TCLB_cluster
+    default: ""
+runs:
+  using: 'composite'
+  steps:
+    - uses: actions/checkout@v3
+      with:
+        repository: ${{ inputs.repository }}
+        ref: ${{ inputs.ref }}
+        path: 'TCLB'
+    - shell: bash
+      id: compile
+      run: |
+        DIR="TCLB"
+        INSTALL="$(test "${{ inputs.install }}" == "true" && echo true || echo false)"
+        CLUSTER="${{ inputs.cluster }}"
+        cd "$DIR"
+        if $INSTALL
+        then
+          tools/install.sh --sudo essentials
+          tools/install.sh --sudo r
+          tools/install.sh --sudo openmpi
+          # tools/install.sh --sudo python-dev
+        fi
+        if test -z "$CLUSTER"
+        then
+          source tools/env.sh # needed only on macos
+          tools/install.sh rdep
+          make configure
+          ./configure ${{ inputs.configureoptions }}
+          make ${{ inputs.model }}
+        else
+          git clone --depth 1 --branch "$CLUSTER" "https://github.com/CFD-GO/TCLB_cluster.git" "p"
+          p/config -y
+          p/make ${{ inputs.model }}
+        fi

From 4ad799205ce0803fa29f3a4f716de07f9f16a218 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:29:31 +1000
Subject: [PATCH 04/27] correcting values in actions

---
 .github/actions/compile/action.yaml   |  2 +-
 .github/actions/configure/action.yaml |  4 ++--
 .github/actions/install/action.yaml   | 12 ++++++------
 3 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/actions/compile/action.yaml b/.github/actions/compile/action.yaml
index f9f1a59e2..8cec417ac 100644
--- a/.github/actions/compile/action.yaml
+++ b/.github/actions/compile/action.yaml
@@ -3,7 +3,7 @@ description: 'This action tests TCLB'
 inputs:
   model:
     description: model to compile
-    default: d2q9
+    default: 'd2q9'
 runs:
   using: 'composite'
   steps:
diff --git a/.github/actions/configure/action.yaml b/.github/actions/configure/action.yaml
index a35850e2e..dd394f931 100644
--- a/.github/actions/configure/action.yaml
+++ b/.github/actions/configure/action.yaml
@@ -6,10 +6,10 @@ inputs:
     default: false
   cuda_arch:
     description: CUDA arch (sm_) to use
-    default: sm_50
+    default: 'sm_50'
   precision:
     description: compute precision to use
-    default: double
+    default: 'double'
   rinside:
     description: compute precision to use
     default: false
diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index 115ab9aab..654d8242d 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -9,7 +9,7 @@ inputs:
     default: false
   MPI:
     description: install MPI (openmpi)
-    default: openmpi
+    default: 'openmpi'
   python_dev:
     description: install python-dev
     default: false
@@ -19,18 +19,18 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - if: inputs.essentials == true
+    - if: inputs.essentials
       shell: bash
       run: tools/install.sh --sudo essentials
-    - if: inputs.R == true
+    - if: inputs.R
       shell: bash
       run: tools/install.sh --sudo r
-    - if: inputs.MPI == openmpi
+    - if: inputs.MPI == 'openmpi'
       shell: bash
       run: tools/install.sh --sudo openmpi
-    - if: inputs.python_dev == true
+    - if: inputs.python_dev
       shell: bash
       run: tools/install.sh --sudo python-dev
-    - if: inputs.rdep == true
+    - if: inputs.rdep
       shell: bash
       run: tools/install.sh --sudo rdep

From 296bc5e9a5436110d6a0fc906f0b95b1fe87026d Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:36:53 +1000
Subject: [PATCH 05/27] moving to python3 in python-dev installation

---
 tools/install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/install.sh b/tools/install.sh
index ecdb11245..b70dbee76 100755
--- a/tools/install.sh
+++ b/tools/install.sh
@@ -371,7 +371,7 @@ do
 			try "Installing sympy from yum" $SUDO yum install -y sympy
 			;;
 		apt-get)
-			try "Installing python-dev from APT" $SUDO apt-get install -qq python-dev python-numpy python-sympy
+			try "Installing python-dev from APT" $SUDO apt-get install -qq python3-dev python3-numpy python3-sympy
 			;;
 		brew)
 			try "Installing Python from brew (this should install headers as well)" brew install python

From e49f90862997f363f9153d76f76d8cb43ef5327f Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:37:16 +1000
Subject: [PATCH 06/27] Adding model testing

---
 .github/actions/configure/action.yaml |  2 +-
 .github/actions/test/action.yaml      | 48 ++-------------------------
 .github/workflows/test.yml            | 11 ++++++
 3 files changed, 14 insertions(+), 47 deletions(-)

diff --git a/.github/actions/configure/action.yaml b/.github/actions/configure/action.yaml
index dd394f931..bdb1c2ed4 100644
--- a/.github/actions/configure/action.yaml
+++ b/.github/actions/configure/action.yaml
@@ -24,7 +24,7 @@ inputs:
     default: true
   python:
     description: compute precision to use
-    default: true
+    default: false
   options:
     description: other configure options
     default: ''
diff --git a/.github/actions/test/action.yaml b/.github/actions/test/action.yaml
index 201c13d6a..f93007f53 100644
--- a/.github/actions/test/action.yaml
+++ b/.github/actions/test/action.yaml
@@ -1,55 +1,11 @@
 name: 'TCLB Test'
 description: 'This action tests TCLB'
 inputs:
-  repository:
-    description: 'Repository name with owner. For example, actions/checkout'
-    default: ${{ github.repository }}
-  ref:
-    description: branch or tag to test
-    default: master
-  install:
-    description: install dependencies
-    default: false
-  configureoptions:
-    description: options for configure
-    default: --disable-cuda
   model:
     description: model to compile
-    default: d2q9
-  cluster:
-    description: use TCLB_cluster
-    default: ""
+    default: 'd2q9'
 runs:
   using: 'composite'
   steps:
-    - uses: actions/checkout@v3
-      with:
-        repository: ${{ inputs.repository }}
-        ref: ${{ inputs.ref }}
-        path: 'TCLB'
     - shell: bash
-      id: compile
-      run: |
-        DIR="TCLB"
-        INSTALL="$(test "${{ inputs.install }}" == "true" && echo true || echo false)"
-        CLUSTER="${{ inputs.cluster }}"
-        cd "$DIR"
-        if $INSTALL
-        then
-          tools/install.sh --sudo essentials
-          tools/install.sh --sudo r
-          tools/install.sh --sudo openmpi
-          # tools/install.sh --sudo python-dev
-        fi
-        if test -z "$CLUSTER"
-        then
-          source tools/env.sh # needed only on macos
-          tools/install.sh rdep
-          make configure
-          ./configure ${{ inputs.configureoptions }}
-          make ${{ inputs.model }}
-        else
-          git clone --depth 1 --branch "$CLUSTER" "https://github.com/CFD-GO/TCLB_cluster.git" "p"
-          p/config -y
-          p/make ${{ inputs.model }}
-        fi
+      run: tools/test.sh ${{ inputs.model }}
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 1ed5e06b5..0d4f10449 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -12,7 +12,18 @@ jobs:
     steps:
     - uses: actions/checkout@v3
     - uses: ./.github/actions/install
+      with:
+        python-dev: true
+        rinside: true
     - uses: ./.github/actions/configure
+      with:
+        gpu: false
+        python: true
+        paranoid: true
+        coverage: true
     - uses: ./.github/actions/compile
       with:
         model: ${{ matrix.model }}
+    - uses: ./.github/actions/test
+      with:
+        model: ${{ matrix.model }}

From 987fb0cab8c344097802ad4a02bef8ac891c2ecd Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:37:39 +1000
Subject: [PATCH 07/27] Adding model testing

---
 .github/actions/test/action.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/actions/test/action.yaml b/.github/actions/test/action.yaml
index f93007f53..ccf35ba90 100644
--- a/.github/actions/test/action.yaml
+++ b/.github/actions/test/action.yaml
@@ -8,4 +8,4 @@ runs:
   using: 'composite'
   steps:
     - shell: bash
-      run: tools/test.sh ${{ inputs.model }}
+      run: tools/tests.sh ${{ inputs.model }}

From 4391923797a2fb5b89e8c86a6b7df039c1a2bf7a Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 10:46:23 +1000
Subject: [PATCH 08/27] Moving to python3 in configure

---
 src/configure.ac | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/configure.ac b/src/configure.ac
index 3b99d3f32..fd91a339d 100644
--- a/src/configure.ac
+++ b/src/configure.ac
@@ -445,9 +445,8 @@ fi
 
 if  test "x${with_python}" == "xyes"; then
    
-    AC_CHECK_PROG(python_config,"${with_python_config}","${with_python_config}",python-config)
-    AC_CHECK_PROG(python_bin,"${with_python_bin}","${with_python_bin}",python)
-    
+    AC_CHECK_PROG(python_bin,"${with_python_bin}","${with_python_bin}",python3)
+    AC_CHECK_PROG(python_config,"${with_python_config}","${with_python_config}",${python_bin}-config)
 
     AC_MSG_NOTICE([python config: ${python_config}])
     AC_MSG_NOTICE([python: ${python_bin}])

From 4441fe6590d7e4f8a013a141e233c80789ac3d14 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 11:42:05 +1000
Subject: [PATCH 09/27] Temprorary switch off checking sprint overflow

---
 src/configure.ac | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/configure.ac b/src/configure.ac
index fd91a339d..732c1ca19 100644
--- a/src/configure.ac
+++ b/src/configure.ac
@@ -815,7 +815,7 @@ fi
 
 if test "x${enable_paranoid}" == "xyes"
 then
-	CPP_OPT="${CPP_OPT} -Wall -Werror -Wno-unused-but-set-variable -Wno-unused-variable"
+	CPP_OPT="${CPP_OPT} -Wall -Werror -Wno-unused-but-set-variable -Wno-unused-variable -Wno-format-overflow"
 fi
 
 if test "x${enable_profiling}" == "xyes"

From 108477129c13735a1c67ac2cdfdee044a3475408 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 11:42:27 +1000
Subject: [PATCH 10/27] Making FTabs trivialy copyable

---
 src/Global.h.Rt | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/src/Global.h.Rt b/src/Global.h.Rt
index 90ce0c46f..0b36f0f51 100644
--- a/src/Global.h.Rt
+++ b/src/Global.h.Rt
@@ -69,13 +69,6 @@ for (m in Margin) { ?>
         void Clear(int,int,int);
         void PreAlloc(int,int,int);
         void Free();
-/// Assign operator (no alloc)
-        inline FTabs & operator=(const FTabs & in) { <?R
-    for (m in NonEmptyMargin) { ?>
-            <?%s m$name ?> = in. <?%s m$name ?>; <?R
-    } ?>
-	    return *this;
-        }
     };
 
 #define INFO_H 1

From 8de5012d8afa46a5a942cad79cd99ee12899613a Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 11:44:07 +1000
Subject: [PATCH 11/27] Checkout submodules for tests

---
 .github/workflows/test.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 0d4f10449..e17e77818 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -11,6 +11,8 @@ jobs:
         model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
     steps:
     - uses: actions/checkout@v3
+      with:
+        submodules: true
     - uses: ./.github/actions/install
       with:
         python-dev: true

From 1cf5512073cce93e9c26a65a54ca172e09703196 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 13:04:39 +1000
Subject: [PATCH 12/27] Updating tests

---
 tests | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests b/tests
index d1ec9250f..8abd63974 160000
--- a/tests
+++ b/tests
@@ -1 +1 @@
-Subproject commit d1ec9250f4f08aeff5d06aa18e9ccaf90296e441
+Subproject commit 8abd639747207824355bb3376b2180da99d705f6

From 43ed021571456841fd61e469f72f2df44889702a Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 13:34:30 +1000
Subject: [PATCH 13/27] moving test workflow

---
 .github/workflows/{test.yml => cpu_test.yml} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename .github/workflows/{test.yml => cpu_test.yml} (100%)

diff --git a/.github/workflows/test.yml b/.github/workflows/cpu_test.yml
similarity index 100%
rename from .github/workflows/test.yml
rename to .github/workflows/cpu_test.yml

From 5c7c28e3c5904041062b8ca50695ebbea6a1bbcf Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 13:37:00 +1000
Subject: [PATCH 14/27] correcting minor things and adding codecov

---
 .github/actions/install/action.yaml | 6 ++++++
 .github/workflows/cpu_test.yml      | 3 ++-
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index 654d8242d..65977c0ad 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -16,6 +16,9 @@ inputs:
   rdep:
     description: install python-dev
     default: true
+  rinside:
+    description: install python-dev
+    default: true
 runs:
   using: 'composite'
   steps:
@@ -25,6 +28,9 @@ runs:
     - if: inputs.R
       shell: bash
       run: tools/install.sh --sudo r
+    - if: inputs.rinside
+      shell: bash
+      run: tools/install.sh --sudo rinside
     - if: inputs.MPI == 'openmpi'
       shell: bash
       run: tools/install.sh --sudo openmpi
diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index e17e77818..7c4d4f55e 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -15,7 +15,7 @@ jobs:
         submodules: true
     - uses: ./.github/actions/install
       with:
-        python-dev: true
+        python_dev: true
         rinside: true
     - uses: ./.github/actions/configure
       with:
@@ -29,3 +29,4 @@ jobs:
     - uses: ./.github/actions/test
       with:
         model: ${{ matrix.model }}
+    - uses: codecov/codecov-action@v3

From 0711dca1c85ca7cdc0cca42b13f2dc83e9e9a5e3 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 14:36:09 +1000
Subject: [PATCH 15/27] Adding lcov coverage generation

---
 .github/actions/coverage/action.yaml | 14 ++++++++++++++
 .github/workflows/cpu_test.yml       |  4 ++++
 2 files changed, 18 insertions(+)
 create mode 100644 .github/actions/coverage/action.yaml

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
new file mode 100644
index 000000000..30b4296fe
--- /dev/null
+++ b/.github/actions/coverage/action.yaml
@@ -0,0 +1,14 @@
+name: 'TCLB Test'
+description: 'This action tests TCLB'
+inputs:
+  model:
+    description: model to compile
+    default: 'd2q9'
+runs:
+  using: 'composite'
+  steps:
+    - shell: bash
+      run: |
+        lcov --capture --directory . --output-file coverage.info
+        lcov --remove coverage.info '/usr/*' --output-file coverage.info
+        lcov --list coverage.info
diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index 7c4d4f55e..f4840eefe 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -29,4 +29,8 @@ jobs:
     - uses: ./.github/actions/test
       with:
         model: ${{ matrix.model }}
+    - uses: ./.github/actions/coverage
     - uses: codecov/codecov-action@v3
+      with:
+        files: coverage.info
+        flags: ${{ matrix.model }}
\ No newline at end of file

From d5436100854c44c9cd14186dba0b014906e3fd24 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 14:59:03 +1000
Subject: [PATCH 16/27] Improving the install action and installing lcov in
 test

---
 .github/actions/install/action.yaml | 80 +++++++++++++++++++++++------
 .github/workflows/cpu_test.yml      |  6 ++-
 2 files changed, 69 insertions(+), 17 deletions(-)

diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index 65977c0ad..eafc97d6c 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -1,42 +1,90 @@
 name: 'TCLB Install'
 description: 'This action installes TCLB dependencies'
 inputs:
-  R:
-    description: install R
-    default: true
   essentials:
     description: install essentials
     default: false
-  MPI:
-    description: install MPI (openmpi)
-    default: 'openmpi'
-  python_dev:
-    description: install python-dev
-    default: false
+  r:
+    description: install r
+    default: true
   rdep:
-    description: install python-dev
+    description: install rdep
     default: true
+  rpython:
+    description: install rpython
+    default: false
+  reticulate:
+    description: install reticulate
+    default: false
   rinside:
-    description: install python-dev
+    description: install rinside
+    default: false
+  cuda:
+    description: install cuda
+    default: false
+  openmpi:
+    description: install openmpi
     default: true
+  lcov:
+    description: install lcov
+    default: false
+  submodules:
+    description: install submodules
+    default: false
+  gitdep:
+    description: install gitdep
+    default: false
+  python-dev:
+    description: install python-dev
+    default: false
+  module:
+    description: install module
+    default: false
+  tapenade:
+    description: install tapenade
+    default: false
 runs:
   using: 'composite'
   steps:
     - if: inputs.essentials
       shell: bash
       run: tools/install.sh --sudo essentials
-    - if: inputs.R
+    - if: inputs.r
       shell: bash
       run: tools/install.sh --sudo r
+    - if: inputs.rdep
+      shell: bash
+      run: tools/install.sh --sudo rdep
+    - if: inputs.rpython
+      shell: bash
+      run: tools/install.sh --sudo rpython
+    - if: inputs.reticulate
+      shell: bash
+      run: tools/install.sh --sudo reticulate
     - if: inputs.rinside
       shell: bash
       run: tools/install.sh --sudo rinside
-    - if: inputs.MPI == 'openmpi'
+    - if: inputs.cuda
+      shell: bash
+      run: tools/install.sh --sudo cuda
+    - if: inputs.openmpi
       shell: bash
       run: tools/install.sh --sudo openmpi
-    - if: inputs.python_dev
+    - if: inputs.lcov
+      shell: bash
+      run: tools/install.sh --sudo lcov
+    - if: inputs.submodules
+      shell: bash
+      run: tools/install.sh --sudo submodules
+    - if: inputs.gitdep
+      shell: bash
+      run: tools/install.sh --sudo gitdep
+    - if: inputs.python-dev
       shell: bash
       run: tools/install.sh --sudo python-dev
-    - if: inputs.rdep
+    - if: inputs.module
       shell: bash
-      run: tools/install.sh --sudo rdep
+      run: tools/install.sh --sudo module
+    - if: inputs.tapenade
+      shell: bash
+      run: tools/install.sh --sudo tapenade
diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index f4840eefe..47e94bdf0 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -15,8 +15,12 @@ jobs:
         submodules: true
     - uses: ./.github/actions/install
       with:
-        python_dev: true
+        r: true
+        rdep: true
+        openmpi: true
+        python-dev: true
         rinside: true
+        lcov: true
     - uses: ./.github/actions/configure
       with:
         gpu: false

From 354c505390130607aed109528c19ca7843a9fe00 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 15:15:52 +1000
Subject: [PATCH 17/27] Improving the install action

---
 .github/actions/install/action.yaml | 30 ++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index eafc97d6c..ec5c27ebc 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -46,45 +46,45 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - if: inputs.essentials
+    - if: inputs.essentials != 'false'
       shell: bash
       run: tools/install.sh --sudo essentials
-    - if: inputs.r
+    - if: inputs.r != 'false'
       shell: bash
       run: tools/install.sh --sudo r
-    - if: inputs.rdep
+    - if: inputs.rdep != 'false'
       shell: bash
       run: tools/install.sh --sudo rdep
-    - if: inputs.rpython
+    - if: inputs.rpython != 'false'
       shell: bash
       run: tools/install.sh --sudo rpython
-    - if: inputs.reticulate
+    - if: inputs.reticulate != 'false'
       shell: bash
       run: tools/install.sh --sudo reticulate
-    - if: inputs.rinside
+    - if: inputs.rinside != 'false'
       shell: bash
       run: tools/install.sh --sudo rinside
-    - if: inputs.cuda
+    - if: inputs.cuda != 'false'
       shell: bash
-      run: tools/install.sh --sudo cuda
-    - if: inputs.openmpi
+      run: tools/install.sh --sudo cuda ${{ inputs.cuda }}
+    - if: inputs.openmpi != 'false'
       shell: bash
       run: tools/install.sh --sudo openmpi
-    - if: inputs.lcov
+    - if: inputs.lcov != 'false'
       shell: bash
       run: tools/install.sh --sudo lcov
-    - if: inputs.submodules
+    - if: inputs.submodules != 'false'
       shell: bash
       run: tools/install.sh --sudo submodules
-    - if: inputs.gitdep
+    - if: inputs.gitdep != 'false'
       shell: bash
       run: tools/install.sh --sudo gitdep
-    - if: inputs.python-dev
+    - if: inputs.python-dev != 'false'
       shell: bash
       run: tools/install.sh --sudo python-dev
-    - if: inputs.module
+    - if: inputs.module != 'false'
       shell: bash
       run: tools/install.sh --sudo module
-    - if: inputs.tapenade
+    - if: inputs.tapenade != 'false'
       shell: bash
       run: tools/install.sh --sudo tapenade

From e95b02cd3f7d9b8c2230c0159d6a66e28e380a1e Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 15:48:41 +1000
Subject: [PATCH 18/27] Correcting CUDA installation script and adding GPU
 compilation workflow

---
 .github/actions/coverage/action.yaml |  4 ++--
 .github/workflows/gpu_comp.yml       | 30 ++++++++++++++++++++++++++++
 tools/install.sh                     | 13 ++++++++++--
 3 files changed, 43 insertions(+), 4 deletions(-)
 create mode 100644 .github/workflows/gpu_comp.yml

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
index 30b4296fe..9ffea96d9 100644
--- a/.github/actions/coverage/action.yaml
+++ b/.github/actions/coverage/action.yaml
@@ -10,5 +10,5 @@ runs:
     - shell: bash
       run: |
         lcov --capture --directory . --output-file coverage.info
-        lcov --remove coverage.info '/usr/*' --output-file coverage.info
-        lcov --list coverage.info
+        test -s coverage.info && lcov --remove coverage.info '/usr/*' --output-file coverage.info
+        test -s coverage.info && lcov --list coverage.info
diff --git a/.github/workflows/gpu_comp.yml b/.github/workflows/gpu_comp.yml
new file mode 100644
index 000000000..5672abd48
--- /dev/null
+++ b/.github/workflows/gpu_comp.yml
@@ -0,0 +1,30 @@
+name: Testing models
+
+on: [ push, pull_request ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        submodules: true
+    - uses: ./.github/actions/install
+      with:
+        r: true
+        rdep: true
+        openmpi: true
+        rinside: true
+        cuda: 10.2
+    - uses: ./.github/actions/configure
+      with:
+        gpu: true
+        cuda_arch: sm_60
+        paranoid: true
+    - uses: ./.github/actions/compile
+      with:
+        model: ${{ matrix.model }}
diff --git a/tools/install.sh b/tools/install.sh
index b70dbee76..a7b90769a 100755
--- a/tools/install.sh
+++ b/tools/install.sh
@@ -300,8 +300,17 @@ do
 		
 		case "$PMS" in
 		apt-get)
-			try "Downloading CUDA dist" wget $WGETOPT http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1204/x86_64/cuda-repo-ubuntu1204_${CUDA}_amd64.deb
-			try "Installing CUDA dist" dpkg -i cuda-repo-ubuntu1204_${CUDA}_amd64.deb
+			OS=ubuntu1204
+			if test "$(lsb_release -si)" == "Ubuntu"
+			then
+				OS="ubuntu$(lsb_release -sr | sed 's/[.]//g')"
+			fi
+			KEYRINGVER='1.0-1'
+			PINFILE="cuda-${OS}.pin"
+			try "Downloading CUDA pin file" wget $WGETOPT http://developer.download.nvidia.com/compute/cuda/repos/${OS}/x86_64/${PINFILE} -O tmp.pinfile
+			try "Downloading CUDA pin file" wget $WGETOPT http://developer.download.nvidia.com/compute/cuda/repos/${OS}/x86_64/cuda-keyring_${KEYRINGVER}_all.deb -O tmp.keyring.deb
+			try "Installing CUDA dist" $SUDO dpkg -i tmp.keyring.deb
+			try "Planting pin file" $SUDO mv tmp.pinfile /etc/apt/preferences.d/cuda-repository-pin-600
 			try "Updating APT" $SUDO apt-get update -qq
 			CUDA_APT=${CUDA%-*}
 			CUDA_APT=${CUDA_APT/./-}

From c00d49d9d480fd9574eaabfe6814113ae6336761 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 16:05:38 +1000
Subject: [PATCH 19/27] Correcting coverage export and cuda installation

---
 .github/actions/coverage/action.yaml | 7 +++++--
 tools/install.sh                     | 2 +-
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
index 9ffea96d9..1379d1225 100644
--- a/.github/actions/coverage/action.yaml
+++ b/.github/actions/coverage/action.yaml
@@ -10,5 +10,8 @@ runs:
     - shell: bash
       run: |
         lcov --capture --directory . --output-file coverage.info
-        test -s coverage.info && lcov --remove coverage.info '/usr/*' --output-file coverage.info
-        test -s coverage.info && lcov --list coverage.info
+        if test -s coverage.info
+        then
+          lcov --remove coverage.info '/usr/*' --output-file coverage.info
+          lcov --list coverage.info
+        fi
diff --git a/tools/install.sh b/tools/install.sh
index a7b90769a..4a0db4db9 100755
--- a/tools/install.sh
+++ b/tools/install.sh
@@ -314,7 +314,7 @@ do
 			try "Updating APT" $SUDO apt-get update -qq
 			CUDA_APT=${CUDA%-*}
 			CUDA_APT=${CUDA_APT/./-}
-			try "Installing CUDA form APT" $SUDO apt-get install -y cuda-drivers cuda-core-${CUDA_APT} cuda-cudart-dev-${CUDA_APT}
+			try "Installing CUDA form APT" $SUDO apt-get install -y cuda-${CUDA_APT}
 			try "Clean APT" $SUDO apt-get clean
 			;;
 		*)

From 52b10b7e5e0d5103964d753a51f4616a1bf8882d Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 16:10:51 +1000
Subject: [PATCH 20/27] Changed CUDA version in test

---
 .github/workflows/gpu_comp.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/gpu_comp.yml b/.github/workflows/gpu_comp.yml
index 5672abd48..6581af5dc 100644
--- a/.github/workflows/gpu_comp.yml
+++ b/.github/workflows/gpu_comp.yml
@@ -19,7 +19,7 @@ jobs:
         rdep: true
         openmpi: true
         rinside: true
-        cuda: 10.2
+        cuda: 11.7
     - uses: ./.github/actions/configure
       with:
         gpu: true

From 4482fbdff5b2451e2d20df53fa7a4c59417f8920 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 16:38:15 +1000
Subject: [PATCH 21/27] Changed CUDA version in test

---
 tools/install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/install.sh b/tools/install.sh
index 4a0db4db9..34c0427a7 100755
--- a/tools/install.sh
+++ b/tools/install.sh
@@ -314,7 +314,7 @@ do
 			try "Updating APT" $SUDO apt-get update -qq
 			CUDA_APT=${CUDA%-*}
 			CUDA_APT=${CUDA_APT/./-}
-			try "Installing CUDA form APT" $SUDO apt-get install -y cuda-${CUDA_APT}
+			try "Installing CUDA form APT" $SUDO apt-get install -y cuda-compiler-${CUDA_APT} cuda-libraries-${CUDA_APT} cuda-libraries-dev-${CUDA_APT}
 			try "Clean APT" $SUDO apt-get clean
 			;;
 		*)

From c4904cfca587560e5bb0074bb8afb5cab6bcc42e Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 16:54:22 +1000
Subject: [PATCH 22/27] Switching to external CUDA installer

---
 .github/workflows/gpu_comp.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/gpu_comp.yml b/.github/workflows/gpu_comp.yml
index 6581af5dc..b86cb2b72 100644
--- a/.github/workflows/gpu_comp.yml
+++ b/.github/workflows/gpu_comp.yml
@@ -19,7 +19,8 @@ jobs:
         rdep: true
         openmpi: true
         rinside: true
-        cuda: 11.7
+    - uses: Jimver/cuda-toolkit@v0.2.8
+      id: cuda-install
     - uses: ./.github/actions/configure
       with:
         gpu: true

From 8078672cd877920e2c9baaafae6d821d03b42cd4 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 16:57:51 +1000
Subject: [PATCH 23/27] Omitting codecov upload when empty report

---
 .github/actions/coverage/action.yaml | 3 +++
 .github/workflows/cpu_test.yml       | 4 +++-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
index 1379d1225..a6dde530d 100644
--- a/.github/actions/coverage/action.yaml
+++ b/.github/actions/coverage/action.yaml
@@ -14,4 +14,7 @@ runs:
         then
           lcov --remove coverage.info '/usr/*' --output-file coverage.info
           lcov --list coverage.info
+          echo "empty=true" >> $GITHUB_OUTPUT
+        else
+          echo "empty=false" >> $GITHUB_OUTPUT
         fi
diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index 47e94bdf0..edf261049 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -34,7 +34,9 @@ jobs:
       with:
         model: ${{ matrix.model }}
     - uses: ./.github/actions/coverage
+      id: coverage
     - uses: codecov/codecov-action@v3
+      if: steps.coverage.outputs.empty != 'true'
       with:
         files: coverage.info
-        flags: ${{ matrix.model }}
\ No newline at end of file
+        flags: ${{ matrix.model }}

From e91e43151818937e73c973cf31b2e011578a5788 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Wed, 9 Nov 2022 17:37:06 +1000
Subject: [PATCH 24/27] Omitting codecov upload when empty report

---
 .github/actions/coverage/action.yaml | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
index a6dde530d..cfde99f5b 100644
--- a/.github/actions/coverage/action.yaml
+++ b/.github/actions/coverage/action.yaml
@@ -1,13 +1,14 @@
-name: 'TCLB Test'
-description: 'This action tests TCLB'
-inputs:
-  model:
-    description: model to compile
-    default: 'd2q9'
+name: 'TCLB Coverage'
+description: 'This action gatheres coverage data for TCLB'
+outputs:
+  empty:
+    description: "Is the report empty"
+    value: ${{ steps.gather.outputs.empty }}
 runs:
   using: 'composite'
   steps:
     - shell: bash
+      id: gather
       run: |
         lcov --capture --directory . --output-file coverage.info
         if test -s coverage.info

From e051428957c48c9fa404f18f07a3707afa6e3be5 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Thu, 10 Nov 2022 09:54:26 +1000
Subject: [PATCH 25/27] Switching back to own CUDA installation

---
 .github/actions/install/action.yaml | 7 ++++++-
 .github/workflows/gpu_comp.yml      | 3 +--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/.github/actions/install/action.yaml b/.github/actions/install/action.yaml
index ec5c27ebc..c6a365741 100644
--- a/.github/actions/install/action.yaml
+++ b/.github/actions/install/action.yaml
@@ -66,7 +66,12 @@ runs:
       run: tools/install.sh --sudo rinside
     - if: inputs.cuda != 'false'
       shell: bash
-      run: tools/install.sh --sudo cuda ${{ inputs.cuda }}
+      run: |
+        tools/install.sh --sudo cuda ${{ inputs.cuda }}
+        CUDA_PATH=/usr/local/cuda-${{ inputs.cuda }}
+        echo "$CUDA_PATH/bin" >>$GITHUB_PATH
+        echo "LD_LIBRARY_PATH=$CUDA_PATH/lib64:$LD_LIBRARY_PATH" >>$GITHUB_ENV
+        echo "CUDA_PATH=$CUDA_PATH" >>$GITHUB_OUTPUT
     - if: inputs.openmpi != 'false'
       shell: bash
       run: tools/install.sh --sudo openmpi
diff --git a/.github/workflows/gpu_comp.yml b/.github/workflows/gpu_comp.yml
index b86cb2b72..6581af5dc 100644
--- a/.github/workflows/gpu_comp.yml
+++ b/.github/workflows/gpu_comp.yml
@@ -19,8 +19,7 @@ jobs:
         rdep: true
         openmpi: true
         rinside: true
-    - uses: Jimver/cuda-toolkit@v0.2.8
-      id: cuda-install
+        cuda: 11.7
     - uses: ./.github/actions/configure
       with:
         gpu: true

From cc826b5ebffa46f5eab08758b8d29a81aa80f67b Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Thu, 10 Nov 2022 09:56:41 +1000
Subject: [PATCH 26/27] Moving to a different variable setup for coverage
 reports

---
 .github/actions/coverage/action.yaml | 10 +++++-----
 .github/workflows/cpu_test.yml       |  4 ++--
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/actions/coverage/action.yaml b/.github/actions/coverage/action.yaml
index cfde99f5b..8d7fc3615 100644
--- a/.github/actions/coverage/action.yaml
+++ b/.github/actions/coverage/action.yaml
@@ -1,9 +1,9 @@
 name: 'TCLB Coverage'
 description: 'This action gatheres coverage data for TCLB'
 outputs:
-  empty:
-    description: "Is the report empty"
-    value: ${{ steps.gather.outputs.empty }}
+  reports:
+    description: "Report files"
+    value: ${{ steps.gather.outputs.reports }}
 runs:
   using: 'composite'
   steps:
@@ -15,7 +15,7 @@ runs:
         then
           lcov --remove coverage.info '/usr/*' --output-file coverage.info
           lcov --list coverage.info
-          echo "empty=true" >> $GITHUB_OUTPUT
+          echo "reports=coverage.info" >> $GITHUB_OUTPUT
         else
-          echo "empty=false" >> $GITHUB_OUTPUT
+          echo "reports=" >> $GITHUB_OUTPUT
         fi
diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index edf261049..57398646f 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -36,7 +36,7 @@ jobs:
     - uses: ./.github/actions/coverage
       id: coverage
     - uses: codecov/codecov-action@v3
-      if: steps.coverage.outputs.empty != 'true'
+      if: steps.coverage.outputs.reports != ''
       with:
-        files: coverage.info
+        files: ${{ steps.coverage.outputs.reports }}
         flags: ${{ matrix.model }}

From b19c1da251d6399d29722ca20d2f9c5256f213b8 Mon Sep 17 00:00:00 2001
From: L Laniewski-Wollk <uqllanie@uq.edu.au>
Date: Thu, 10 Nov 2022 10:35:52 +1000
Subject: [PATCH 27/27] Nice names and badges

---
 .github/workflows/cpu_test.yml | 23 +++++++++++++++--------
 .github/workflows/gpu_comp.yml | 14 +++++++++-----
 README.md                      |  6 ++++--
 3 files changed, 28 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/cpu_test.yml b/.github/workflows/cpu_test.yml
index 57398646f..f5b11310c 100644
--- a/.github/workflows/cpu_test.yml
+++ b/.github/workflows/cpu_test.yml
@@ -1,4 +1,4 @@
-name: Testing models
+name: CPU
 
 on: [ push, pull_request ]
 
@@ -10,10 +10,12 @@ jobs:
       matrix:
         model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
     steps:
-    - uses: actions/checkout@v3
+    - name: Git checkout
+      uses: actions/checkout@v3
       with:
         submodules: true
-    - uses: ./.github/actions/install
+    - name: Install dependencies
+      uses: ./.github/actions/install
       with:
         r: true
         rdep: true
@@ -21,21 +23,26 @@ jobs:
         python-dev: true
         rinside: true
         lcov: true
-    - uses: ./.github/actions/configure
+    - name: Configure
+      uses: ./.github/actions/configure
       with:
         gpu: false
         python: true
         paranoid: true
         coverage: true
-    - uses: ./.github/actions/compile
+    - name: Compile
+      uses: ./.github/actions/compile
       with:
         model: ${{ matrix.model }}
-    - uses: ./.github/actions/test
+    - name: Run tests
+      uses: ./.github/actions/test
       with:
         model: ${{ matrix.model }}
-    - uses: ./.github/actions/coverage
+    - name: Gather coverage data
+      uses: ./.github/actions/coverage
       id: coverage
-    - uses: codecov/codecov-action@v3
+    - name: Send coverage data
+      uses: codecov/codecov-action@v3
       if: steps.coverage.outputs.reports != ''
       with:
         files: ${{ steps.coverage.outputs.reports }}
diff --git a/.github/workflows/gpu_comp.yml b/.github/workflows/gpu_comp.yml
index 6581af5dc..173eb4394 100644
--- a/.github/workflows/gpu_comp.yml
+++ b/.github/workflows/gpu_comp.yml
@@ -1,4 +1,4 @@
-name: Testing models
+name: GPU
 
 on: [ push, pull_request ]
 
@@ -10,21 +10,25 @@ jobs:
       matrix:
         model: [d2q9_npe_guo, d2q9_bc, d2q9, d2q9_SRT, d2q9_thin_film, d3q19, d3q19_les, d3q19_heat, d2q9_kuper, d2q9_pf, d2q9_pf_fd, d3q27, d3q27_cumulant, d3q27_cumulant_AVG_IB_SMAG]
     steps:
-    - uses: actions/checkout@v3
+    - name: Git checkout
+      uses: actions/checkout@v3
       with:
         submodules: true
-    - uses: ./.github/actions/install
+    - name: Install dependencies
+      uses: ./.github/actions/install
       with:
         r: true
         rdep: true
         openmpi: true
         rinside: true
         cuda: 11.7
-    - uses: ./.github/actions/configure
+    - name: Configure
+      uses: ./.github/actions/configure
       with:
         gpu: true
         cuda_arch: sm_60
         paranoid: true
-    - uses: ./.github/actions/compile
+    - name: Compile
+      uses: ./.github/actions/compile
       with:
         model: ${{ matrix.model }}
diff --git a/README.md b/README.md
index 6a343bce9..6952b1f39 100644
--- a/README.md
+++ b/README.md
@@ -5,8 +5,10 @@ TCLB Solver [![ZENADO DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3550331.s
 TCLB is a MPI+CUDA or MPI+CPU high-performance Computational Fluid Dynamics simulation code, based on the Lattice Boltzmann Method.
 It provides a clear interface for calculation of complex physics, and the implementation of new models.
 
-- Stable release [(`master` branch)](https://github.com/CFD-GO/TCLB/tree/master):<br/>[![Build Status](https://travis-ci.org/CFD-GO/TCLB.svg?branch=master)](https://travis-ci.org/CFD-GO/TCLB) [![codecov](https://codecov.io/gh/CFD-GO/TCLB/branch/master/graph/badge.svg)](https://codecov.io/gh/CFD-GO/TCLB) [![documentation](https://raw.githubusercontent.com/CFD-GO/documents/master/assets/documentation.svg?sanitize=true)](https://docs.tclb.io/) 
-- Current release [(`develop` branch)](https://github.com/CFD-GO/TCLB/tree/develop):<br/>[![Build Status](https://travis-ci.org/CFD-GO/TCLB.svg?branch=develop)](https://travis-ci.org/CFD-GO/TCLB) [![codecov](https://codecov.io/gh/CFD-GO/TCLB/branch/develop/graph/badge.svg)](https://codecov.io/gh/CFD-GO/TCLB) [![documentation](https://raw.githubusercontent.com/CFD-GO/documents/master/assets/documentation.svg?sanitize=true)](https://develop.docs.tclb.io/)
+- Stable release [(`master` branch)](https://github.com/CFD-GO/TCLB/tree/master):<br/>[![CPU build status](https://github.com/CFD-GO/TCLB/actions/workflows/cpu_test.yml/badge.svg?branch=master)](https://github.com/CFD-GO/TCLB/actions/workflows/cpu_test.yml) [![GPU build status](https://github.com/CFD-GO/TCLB/actions/workflows/gpu_comp.yml/badge.svg?branch=master)](https://github.com/CFD-GO/TCLB/actions/workflows/gpu_comp.yml) [![codecov](https://codecov.io/gh/CFD-GO/TCLB/branch/master/graph/badge.svg)](https://codecov.io/gh/CFD-GO/TCLB) [![documentation](https://raw.githubusercontent.com/CFD-GO/documents/master/assets/documentation.svg?sanitize=true)](https://docs.tclb.io/) 
+
+
+- Current release [(`develop` branch)](https://github.com/CFD-GO/TCLB/tree/develop):<br/>[![CPU build status](https://github.com/CFD-GO/TCLB/actions/workflows/cpu_test.yml/badge.svg?branch=develop)](https://github.com/CFD-GO/TCLB/actions/workflows/cpu_test.yml) [![GPU build status](https://github.com/CFD-GO/TCLB/actions/workflows/gpu_comp.yml/badge.svg?branch=develop)](https://github.com/CFD-GO/TCLB/actions/workflows/gpu_comp.yml) [![codecov](https://codecov.io/gh/CFD-GO/TCLB/branch/develop/graph/badge.svg)](https://codecov.io/gh/CFD-GO/TCLB) [![documentation](https://raw.githubusercontent.com/CFD-GO/documents/master/assets/documentation.svg?sanitize=true)](https://develop.docs.tclb.io/)
 
 ## How to use it