Re-released on 09/03/2024 following #122 (disabled snpEff logging - no changes in functionality)
Added
- Added new subworkflow for
snpEff
variant annotation - Added
Quicksnp
module which creates a neighbor-joining tree with SNP distances on branches
Fixed
- Corrected an issue with downsampling read count calculations
Dependencies
- N/A
Deprecated
- Removed
rate
parameter to usecoverage
instead
TODO
- Update file naming for snpEff mutations file