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spooker: method for determining pipeline version is unreliable #13

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kelly-sovacool opened this issue Sep 19, 2024 · 1 comment

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bug

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kelly-sovacool commented Sep 19, 2024

assumes the user had the pipeline available in the path and used that version, but that's not always the case

Tools/scripts/spooker

Lines 43 to 44 in dcf9687

    
           PIPELINE_PATH=$(which $PIPELINE_NAME_LOWER) 
        
           PIPELINE_VERSION=$($PIPELINE_NAME_LOWER --version 2>/dev/null | tail -n1 | awk '{print $NF}' || echo "UNKNOWN")

kelly-sovacool added the bug label

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kelly-sovacool commented Nov 25, 2024

nextflow pipelines can pass along the manifest.version -- see CCBR/CHAMPAGNE#213

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