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add contrasts property to reneeDataSet #17

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kelly-sovacool opened this issue Dec 29, 2023 · 1 comment

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kelly-sovacool commented Dec 29, 2023 •

edited by sync-by-unito bot

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Property to store contrasts as model formulae for DESeq2.
Also need to let users specify which factor level should be first for each column (e.g. wildtype before knockout).

kelly-sovacool added the enhancement label

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kelly-sovacool commented Apr 19, 2024

look into how DESeq2 handles the design: https://github.com/thelovelab/DESeq2/blob/4497a51ab22e86513ebaec930de3825b45fc89a4/R/AllClasses.R#L25-L59

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