From 114059f7eb7864cf0caddc61c9712242e47fddd9 Mon Sep 17 00:00:00 2001 From: Darryl Nousome Date: Thu, 8 Feb 2024 14:26:27 -0500 Subject: [PATCH] fix: htslib error --- docker/logan_base/Dockerfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docker/logan_base/Dockerfile b/docker/logan_base/Dockerfile index 181d2c1..21d0932 100644 --- a/docker/logan_base/Dockerfile +++ b/docker/logan_base/Dockerfile @@ -27,11 +27,11 @@ RUN apt-get update \ # bwa/0.7.17-4 bowtie/1.2.3 bowtie2/2.3.5.1 # bedtools/2.27.1 bedops/2.4.37 samtools/1.10 # bcftools/1.10.2 vcftools/0.1.16 -# Previous tools already installed tabix/1.10.2 ##trimmomatic/0.39 +# Previous tools already installed tabix/1.10.2 trimmomatic/0.39 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y \ - tabix - #\ - #trimmomatic + tabix \ + libhts-dev + # Install BWA-MEM2 v2.2.1 RUN wget https://github.com/bwa-mem2/bwa-mem2/releases/download/v2.2.1/bwa-mem2-2.2.1_x64-linux.tar.bz2 \