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Add salmon to base image #32

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kopardev opened this issue Jul 29, 2024 · 0 comments · Fixed by #35
Closed

Add salmon to base image #32

kopardev opened this issue Jul 29, 2024 · 0 comments · Fixed by #35
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enhancement New feature or request
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@kopardev
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something like this

# Set the Salmon version
ENV SALMON_VERSION=1.10.1

# Download and install Salmon
RUN wget https://github.com/COMBINE-lab/salmon/releases/download/v$SALMON_VERSION/salmon-$SALMON_VERSION_linux_x86_64.tar.gz && \
    tar -xzf salmon-$SALMON_VERSION_linux_x86_64.tar.gz && \
    mv salmon-$SALMON_VERSION_linux_x86_64 /usr/local/salmon && \
    ln -s /usr/local/salmon/bin/salmon /usr/local/bin/salmon && \
    rm salmon-$SALMON_VERSION_linux_x86_64.tar.gz
@kopardev kopardev added the enhancement New feature or request label Jul 29, 2024
@kopardev kopardev added this to the 2024-07 milestone Jul 29, 2024
@kopardev kopardev self-assigned this Jul 29, 2024
@kelly-sovacool kelly-sovacool self-assigned this Oct 23, 2024
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